Query 032748
Match_columns 134
No_of_seqs 150 out of 1033
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 08:26:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 50.6 4.8 0.00016 26.0 0.8 27 33-59 31-58 (118)
2 1xrd_A LH-1, light-harvesting 39.5 33 0.0011 19.6 3.1 30 47-76 7-42 (52)
3 2cmx_A ORF F-112, F112, hypoth 15.4 41 0.0014 21.9 0.4 25 34-58 32-57 (118)
4 1p58_D Envelope protein M; fla 14.8 2.2E+02 0.0075 17.2 4.1 32 10-42 30-61 (75)
5 2kua_A BCL-2-like protein 10; 13.1 1.3E+02 0.0044 20.9 2.6 18 46-63 88-105 (170)
6 2ksd_A Aerobic respiration con 12.7 12 0.00041 25.0 -2.8 67 8-75 7-76 (115)
7 2np0_B Synaptotagmin-2; botuli 10.8 84 0.0029 14.9 0.7 13 121-133 5-17 (26)
8 1p94_A Plasmid partition prote 10.2 1.2E+02 0.004 18.3 1.4 20 114-133 54-73 (76)
9 3cx5_I Cytochrome B-C1 complex 9.9 2.5E+02 0.0087 16.4 2.8 22 10-31 4-25 (65)
10 2a7w_A PRA-PH, phosphoribosyl- 9.3 4E+02 0.014 17.4 3.8 28 105-132 67-94 (116)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=50.64 E-value=4.8 Score=25.99 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=20.4
Q ss_pred HHHHHHHHh-HhcCCcchHHHHHHHHHH
Q 032748 33 GCSDAIAQK-ISGVKKLQLTRLLLLMFY 59 (134)
Q Consensus 33 ~~gD~laQ~-~~~~~~~D~~Rt~r~~~~ 59 (134)
.+-|++||. +.....|+..|++++.+-
T Consensus 31 sledilaqfeis~~sayniqr~l~~ice 58 (118)
T 2vqc_A 31 TLEDILAQFEISVPSAYNIQRALKAICE 58 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHHh
Confidence 467999997 333467999999998754
No 2
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=39.46 E-value=33 Score=19.56 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=20.7
Q ss_pred cchHHHHHHHHHHhhhccchhHhHH------HHHHH
Q 032748 47 KLQLTRLLLLMFYGFAYGGPFGHFL------HKLMD 76 (134)
Q Consensus 47 ~~D~~Rt~r~~~~G~~~~gP~~h~w------y~~L~ 76 (134)
-+|++|++--.....+..+-..|+- |++||
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~ 42 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 4799999876666656667777765 55555
No 3
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=15.37 E-value=41 Score=21.94 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=15.4
Q ss_pred HHHHHHHh-HhcCCcchHHHHHHHHH
Q 032748 34 CSDAIAQK-ISGVKKLQLTRLLLLMF 58 (134)
Q Consensus 34 ~gD~laQ~-~~~~~~~D~~Rt~r~~~ 58 (134)
+-|++||. ++....++..|++|+.+
T Consensus 32 ~eDIlaqfeIS~s~Ay~I~~~lk~iC 57 (118)
T 2cmx_A 32 LEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhHHHHHHHHHH
Confidence 45777776 33344566667776654
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=14.76 E-value=2.2e+02 Score=17.17 Aligned_cols=32 Identities=13% Similarity=0.000 Sum_probs=26.0
Q ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHhH
Q 032748 10 RKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI 42 (134)
Q Consensus 10 ~~Y~~~l~~~Pl~t~~~ts~~l~~~gD~laQ~~ 42 (134)
.+-++..-|||..+-++. .+.+.+|+-..|++
T Consensus 30 ~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 30 QRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred HHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 445667778999988877 88889999998885
No 5
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=13.07 E-value=1.3e+02 Score=20.91 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=14.6
Q ss_pred CcchHHHHHHHHHHhhhc
Q 032748 46 KKLQLTRLLLLMFYGFAY 63 (134)
Q Consensus 46 ~~~D~~Rt~r~~~~G~~~ 63 (134)
..++|.|.+.+..+|+.+
T Consensus 88 g~iNWGRIVaLfaF~g~L 105 (170)
T 2kua_A 88 QDFSWSQLVMLLAFAGTL 105 (170)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 379999999998888753
No 6
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=12.67 E-value=12 Score=24.95 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHHhHh---cCCcchHHHHHHHHHHhhhccchhHhHHHHHH
Q 032748 8 AWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKIS---GVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLM 75 (134)
Q Consensus 8 l~~~Y~~~l~~~Pl~t~~~ts~~l~~~gD~laQ~~~---~~~~~D~~Rt~r~~~~G~~~~gP~~h~wy~~L 75 (134)
....|-++..|--...-++..+.+..+-+++.|..- -..+.++.=..|..++|. +.+|+.-|.+..+
T Consensus 7 ~aq~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgl-i~aP~viYFls~v 76 (115)
T 2ksd_A 7 LAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGL-LITPWAVYFLSVV 76 (115)
T ss_dssp --------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCSTTTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445566667776666667777777888888888763 234555555666677786 5789988888755
No 7
>2np0_B Synaptotagmin-2; botulinum, neurotoxin, synaptotagamin, receptor, hydrolase; 2.62A {Mus musculus}
Probab=10.76 E-value=84 Score=14.94 Aligned_cols=13 Identities=15% Similarity=-0.008 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhhc
Q 032748 121 RFNFVGKIMEFSQ 133 (134)
Q Consensus 121 ~~~~~~~~~~f~~ 133 (134)
++.+.+.+.+|+.
T Consensus 5 ~d~~~~~k~kf~n 17 (26)
T 2np0_B 5 EDMFAKLKEKFFN 17 (26)
T ss_pred chHHHHHHHHHHH
Confidence 4445556666653
No 8
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=10.19 E-value=1.2e+02 Score=18.31 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=15.5
Q ss_pred HhCCCCHHHHHHHHHhhhhc
Q 032748 114 VVEGVAVRFNFVGKIMEFSQ 133 (134)
Q Consensus 114 ~leg~~~~~~~~~~~~~f~~ 133 (134)
.-+|.|..+...+.+.++.+
T Consensus 54 a~~g~Smsdvvreli~~~L~ 73 (76)
T 1p94_A 54 ARKGTSITDVVNQLVDNWLK 73 (76)
T ss_dssp HHHTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 56788888888888877653
No 9
>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*
Probab=9.92 E-value=2.5e+02 Score=16.39 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=14.3
Q ss_pred HHHHHHHhhCcHHHHHHHHHHH
Q 032748 10 RKYLIQLQVHPLRTKAITAGIL 31 (134)
Q Consensus 10 ~~Y~~~l~~~Pl~t~~~ts~~l 31 (134)
..|+..++|+....-.+..|+.
T Consensus 4 ~iY~~~fkRnSty~~~I~~gaf 25 (65)
T 3cx5_I 4 SLYKTFFKRNAVFVGTIFAGAF 25 (65)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 4688889988855544444443
No 10
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=9.25 E-value=4e+02 Score=17.38 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHhhhh
Q 032748 105 FLFMMYYGLVVEGVAVRFNFVGKIMEFS 132 (134)
Q Consensus 105 ~~f~~~~~~~leg~~~~~~~~~~~~~f~ 132 (134)
.+|...+-+.-.|-+++++++++..++-
T Consensus 67 LlYHllVlL~~~gv~l~dV~~eL~~R~~ 94 (116)
T 2a7w_A 67 LWFHTMVLLTYHGLRPEDVVMELHRREG 94 (116)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4444444437789999999999988864
Done!