Query 032748
Match_columns 134
No_of_seqs 150 out of 1033
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 08:26:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032748.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032748hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 64.9 0.95 6.9E-05 25.4 0.8 26 33-58 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 48.9 9.2 0.00067 20.5 3.1 25 47-71 7-31 (52)
3 d2v9va1 a.4.5.35 (A:377-437) C 29.8 17 0.0012 19.3 2.1 22 36-57 5-27 (61)
4 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 22.7 26 0.0019 22.4 2.5 30 33-63 68-97 (146)
5 d2g7la2 a.121.1.1 (A:87-230) P 18.0 53 0.0039 19.7 3.3 41 4-44 6-51 (144)
6 d1ppjg_ f.23.13.1 (G:) Ubiquin 17.4 87 0.0063 17.6 3.9 29 83-111 32-60 (75)
7 d2g7ga2 a.121.1.1 (A:74-205) P 15.0 61 0.0044 19.0 2.9 40 4-43 6-50 (132)
8 d1yvwa1 a.204.1.4 (A:4-95) Pho 13.9 1.1E+02 0.0081 17.7 3.8 28 106-133 64-91 (92)
9 d2a7wa1 a.204.1.4 (A:4-94) Pho 13.3 1.2E+02 0.0089 17.4 3.9 25 107-131 66-90 (91)
10 d2ca5a1 a.2.20.1 (A:20-78) Mxi 12.7 96 0.007 16.5 2.9 25 7-31 26-50 (59)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=64.93 E-value=0.95 Score=25.37 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=19.8
Q ss_pred HHHHHHHHhH-hcCCcchHHHHHHHHH
Q 032748 33 GCSDAIAQKI-SGVKKLQLTRLLLLMF 58 (134)
Q Consensus 33 ~~gD~laQ~~-~~~~~~D~~Rt~r~~~ 58 (134)
.+-|++||.- .....++..|++++.+
T Consensus 22 ~ledilaqfeis~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 4679999973 3346799999999865
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=48.85 E-value=9.2 Score=20.48 Aligned_cols=25 Identities=12% Similarity=-0.010 Sum_probs=17.8
Q ss_pred cchHHHHHHHHHHhhhccchhHhHH
Q 032748 47 KLQLTRLLLLMFYGFAYGGPFGHFL 71 (134)
Q Consensus 47 ~~D~~Rt~r~~~~G~~~~gP~~h~w 71 (134)
-+|++|++.-.....+.-+-..|+-
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999876666666666666665
No 3
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=29.75 E-value=17 Score=19.28 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=16.0
Q ss_pred HHHHHhH-hcCCcchHHHHHHHH
Q 032748 36 DAIAQKI-SGVKKLQLTRLLLLM 57 (134)
Q Consensus 36 D~laQ~~-~~~~~~D~~Rt~r~~ 57 (134)
.++||.+ |.+..+||.....-+
T Consensus 5 kilaqiiqehregldwqeaatra 27 (61)
T d2v9va1 5 KILAQIIQEHREGLDWQEAATRA 27 (61)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHh
Confidence 4789998 567889998665433
No 4
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=22.68 E-value=26 Score=22.42 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=20.5
Q ss_pred HHHHHHHHhHhcCCcchHHHHHHHHHHhhhc
Q 032748 33 GCSDAIAQKISGVKKLQLTRLLLLMFYGFAY 63 (134)
Q Consensus 33 ~~gD~laQ~~~~~~~~D~~Rt~r~~~~G~~~ 63 (134)
..+.+..+.++ +...||.|.+.+..+|+.+
T Consensus 68 ~f~~V~~elF~-DG~~NWGRIVaLfaFg~~l 97 (146)
T d1k3ka_ 68 QLGLSMLQVSG-DGNMNWGRALAILTFGSFV 97 (146)
T ss_dssp HHHTHHHHHCS-SCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHH
Confidence 34555555443 3557999999999998753
No 5
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=18.05 E-value=53 Score=19.71 Aligned_cols=41 Identities=10% Similarity=0.167 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHH-----HHHHHHHHHHHhHhc
Q 032748 4 VAKEAWRKYLIQLQVHPLRTKAITAG-----ILAGCSDAIAQKISG 44 (134)
Q Consensus 4 ~~~~l~~~Y~~~l~~~Pl~t~~~ts~-----~l~~~gD~laQ~~~~ 44 (134)
-++.+...|.+.+.+||.+...+.+. .....-|-+.+.+.+
T Consensus 6 ~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~ 51 (144)
T d2g7la2 6 QLRAVLTSYTLVLFAHPQLARSALVARPSGENYLRLVERVLELLAR 51 (144)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHHHHHHHHHHHHH
Confidence 46778889999999999988876543 234455666666643
No 6
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.45 E-value=87 Score=17.56 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=22.2
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 032748 83 KDKKTVAKKVLLEQLTSSPWNNFLFMMYY 111 (134)
Q Consensus 83 ~~~~~~~~Kvl~DQ~i~~P~~~~~f~~~~ 111 (134)
.+..++++++--+-+..+|-++..|+.+.
T Consensus 32 ~gi~N~~RR~~~~~l~v~PPfi~~Y~iy~ 60 (75)
T d1ppjg_ 32 KGIPNVLRRTRACILRVAPPFVAFYLVYT 60 (75)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHhHHhceEEcCHHHHHHHHHH
Confidence 56788888888666677888888887663
No 7
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=14.95 E-value=61 Score=19.04 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhCcHHHHHHHHH-----HHHHHHHHHHHhHh
Q 032748 4 VAKEAWRKYLIQLQVHPLRTKAITAG-----ILAGCSDAIAQKIS 43 (134)
Q Consensus 4 ~~~~l~~~Y~~~l~~~Pl~t~~~ts~-----~l~~~gD~laQ~~~ 43 (134)
-++.+...|.+.+.+||.+...+.+. .....-|-+-+.+.
T Consensus 6 ~lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~ 50 (132)
T d2g7ga2 6 AFSEWARSYRAAFSRHPTAIRLLATETVRDPGSLSVYHSAAAGLR 50 (132)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHhhcCCCCChhHHHHHHHHHHHHH
Confidence 35678889999999999988876653 23445555555553
No 8
>d1yvwa1 a.204.1.4 (A:4-95) Phosphoribosyl-ATP pyrophosphatase HisE {Bacillus cereus [TaxId: 1396]}
Probab=13.92 E-value=1.1e+02 Score=17.65 Aligned_cols=28 Identities=7% Similarity=0.020 Sum_probs=20.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhhhc
Q 032748 106 LFMMYYGLVVEGVAVRFNFVGKIMEFSQ 133 (134)
Q Consensus 106 ~f~~~~~~~leg~~~~~~~~~~~~~f~~ 133 (134)
+|...+-+.-.|-+++++++++..++-|
T Consensus 64 lyHllVll~~~gi~~~dV~~eL~~R~gk 91 (92)
T d1yvwa1 64 FYHCFVLLAEKNIALEDVMREVKERNGK 91 (92)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHcCC
Confidence 3444434366899999999999988743
No 9
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=13.29 E-value=1.2e+02 Score=17.37 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhh
Q 032748 107 FMMYYGLVVEGVAVRFNFVGKIMEF 131 (134)
Q Consensus 107 f~~~~~~~leg~~~~~~~~~~~~~f 131 (134)
|...+.+.-.|-+++++++++..+|
T Consensus 66 yHllVlL~~~gi~~~dV~~eL~~R~ 90 (91)
T d2a7wa1 66 FHTMVLLTYHGLRPEDVVMELHRRE 90 (91)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhcC
Confidence 4333333668999999999988765
No 10
>d2ca5a1 a.2.20.1 (A:20-78) MxiH needle protein {Shigella flexneri [TaxId: 623]}
Probab=12.73 E-value=96 Score=16.55 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhCcHHHHHHHHHHH
Q 032748 7 EAWRKYLIQLQVHPLRTKAITAGIL 31 (134)
Q Consensus 7 ~l~~~Y~~~l~~~Pl~t~~~ts~~l 31 (134)
.+++.|+.-|..|-+..|+=++.+-
T Consensus 26 ~~LA~YQ~klsEYnlyRNAQSstVK 50 (59)
T d2ca5a1 26 QLLAEYQSKLSEYTLYRNAQSNTVK 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 5788999999999999888777665
Done!