BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032750
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 58/76 (76%)
Query: 8 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSS 67
Y L EV+ N K+ WL+I G+VYDVT+FL++HPGG+EVLL G DA++ FEDVGHSS
Sbjct: 12 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSD 71
Query: 68 AKAMMDEFYVGDIDSS 83
A+ M+ ++Y+GDI S
Sbjct: 72 AREMLKQYYIGDIHPS 87
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 96.3 bits (238), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K W+II KVYD+T+FL +HPGG+EVLL G DAT+ FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
A+ M+ F +G++
Sbjct: 63 PDAREMLKTFIIGEL 77
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 55/73 (75%)
Query: 8 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSS 67
Y L EV+ N ++ W++I G+VYD+T+FL +HPGG+EVLL G DAT+ FEDVGHS
Sbjct: 5 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPD 64
Query: 68 AKAMMDEFYVGDI 80
A+ M+ ++Y+GD+
Sbjct: 65 AREMLKQYYIGDV 77
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 55/73 (75%)
Query: 8 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSS 67
Y L EV+ N ++ W++I G+VYD+T+FL +HPGG+EVLL G DAT+ FEDVGHS
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPD 66
Query: 68 AKAMMDEFYVGDI 80
A+ M+ ++Y+GD+
Sbjct: 67 AREMLKQYYIGDV 79
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 55/73 (75%)
Query: 8 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSS 67
Y L EV+ N ++ W++I G+VYD+T+FL +HPGG+E+LL G DAT+ FED+GHS
Sbjct: 7 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFEDIGHSPD 66
Query: 68 AKAMMDEFYVGDI 80
A+ M+ ++Y+GD+
Sbjct: 67 AREMLKQYYIGDV 79
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN K WLI+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ M F +G++
Sbjct: 70 TDAREMSKTFIIGEL 84
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 55/75 (73%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K +T AEV+ +N + W II VYDVT FL++HPGG+EVL+ GKDAT+ FEDVGHS
Sbjct: 7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66
Query: 66 SSAKAMMDEFYVGDI 80
S A+ MM ++ VG++
Sbjct: 67 SDAREMMKQYKVGEL 81
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 1 MGGEGK-----VYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDA 55
M G+G Y L EV+ HN + W+++ G+VYD+T+FL +HPGG+EVL G DA
Sbjct: 1 MNGQGSDPAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADA 60
Query: 56 TDDFEDVGHSSSAKAMMDEFYVGDI 80
T+ FEDVGHS A+ M ++Y+GD+
Sbjct: 61 TESFEDVGHSPDAREMSKQYYIGDV 85
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 55/75 (73%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 69 TDARELSKTFIIGEL 83
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 55/75 (73%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 65 TDARELSKTFIIGEL 79
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 54/73 (73%)
Query: 8 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSS 67
Y L EV+ N ++ W++I G+VYD+T+FL +HPGG+EVL G DAT+ FEDVGHS
Sbjct: 7 YRLEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPD 66
Query: 68 AKAMMDEFYVGDI 80
A+ M+ ++Y+GD+
Sbjct: 67 AREMLKQYYIGDV 79
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 55/73 (75%)
Query: 8 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSS 67
Y L EV+ N ++ W++I G+VYD+T+FL +HPGG+E+LL G DAT+ FED+GHS
Sbjct: 12 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPD 71
Query: 68 AKAMMDEFYVGDI 80
A+ M+ ++Y+GD+
Sbjct: 72 AREMLKQYYIGDV 84
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 55/75 (73%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized
Microsomal Rabbit Cytochrome B5
Length = 104
Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN K WLI+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 70 TDARELSKTFIIGEL 84
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN K WLI+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 5 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 65 TDARELSKTFIIGEL 79
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+EVL G DAT+++EDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TK+L++HPGG+EVL G DAT++FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+EVL G DAT+++EDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 53/73 (72%)
Query: 8 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSS 67
Y L EV+ N ++ W+++ G+VYD+T+FL +HPGG+EVL G DAT+ FEDVGHS
Sbjct: 12 YRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPD 71
Query: 68 AKAMMDEFYVGDI 80
A+ M ++Y+GD+
Sbjct: 72 AREMSKQYYIGDV 84
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+E L G DAT++FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+E L G DAT++FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+E L G DAT++FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+EVL G DAT++FED GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+EVL G DAT++FED GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ H D K W+I+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + + +G++
Sbjct: 70 TDARELSKTYIIGEL 84
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ H D K W+I+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 9 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + + +G++
Sbjct: 69 TDARELSKTYIIGEL 83
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ H D K W+I+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + + +G++
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+EVL + G DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ H D K W+I+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + + +G++
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 53/75 (70%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+ VL G DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 89.0 bits (219), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++H GG+EVL G DAT++FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro
Cytochrome B5, A Conformation, Ensemble Of 20
Structures
Length = 94
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 54/75 (72%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ H D K W+I+ KVYD+TK+L++HPGG+EVL G DAT++FEDVGHS
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + + +G++
Sbjct: 65 TDARELSKTYIIGEL 79
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF
Cytochrome B5
Length = 82
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+ VL + G DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 53/75 (70%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ H D K W+I+ KVYD+TKFL++HPGG+EVL G DAT++FEDVGHS
Sbjct: 5 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 SSAKAMMDEFYVGDI 80
+ + + + +G++
Sbjct: 65 TDVRELSKTYIIGEL 79
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 53/75 (70%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHS 65
K YTL E+ HN+ K WLI+ KVYD+TKFL++HPGG+ VL + G DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 66 SSAKAMMDEFYVGDI 80
+ A+ + F +G++
Sbjct: 63 TDARELSKTFIIGEL 77
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 4/82 (4%)
Query: 7 VYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVG--- 63
V+TL +V+ H+ DCW+ I GKVYD+T ++ +HPG ++L G+++T+ +E
Sbjct: 9 VFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGE 68
Query: 64 -HSSSAKAMMDEFYVGDIDSST 84
HSS A ++ + +G ++ T
Sbjct: 69 PHSSLAARLLQRYLIGTLEEIT 90
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 9 TLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSA 68
+ AEV+ HN DCW++I G VYD+T+FL +HPGG +V+ GKD T FE + H+ +
Sbjct: 7 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAPNV 65
Query: 69 --KAMMDEFYVGDIDSS 83
K + E +G + S
Sbjct: 66 IDKYIAPEKKLGPLQGS 82
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%)
Query: 9 TLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSA 68
T E+ HN + DCW+ I G VY+V+ +++ HPGG++ L+ A G D T+ F+ V +
Sbjct: 9 TEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNY 68
Query: 69 KAMMDEFYVGDI 80
++M+ E VG +
Sbjct: 69 ESMLKECLVGRM 80
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 11 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFE 60
AEV+ HN DCW++I G VYD+T+FL +HPGG +V+ GKD T FE
Sbjct: 9 AEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 58
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 11 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFE 60
AEV+ HN DCW++I G VYD+T+FL +HPGG +V+ GKD T FE
Sbjct: 14 AEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4
Angstroms Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 11 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFE 60
AEV+ HN DCW++I G VYD+T+FL +HPGG +V+ GKD T FE
Sbjct: 14 AEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 11 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFE 60
AEV+ HN DCW++I G VYD+T+FL +HPGG +V+ GKD T FE
Sbjct: 14 AEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 11 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFE 60
AEV+ HN DCW++I G VYD+T+FL +HPGG +V+ GKD T FE
Sbjct: 14 AEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate
Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 11 AEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFE 60
AEV+ HN DCW++I G VYD+T+FL +HPGG +V+ GKD T FE
Sbjct: 14 AEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFE 63
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVG-H 64
K YT EV+ HN + D W+I +G+V+D+T F +HPGG +V+L+ G+DAT + + H
Sbjct: 4 KKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPH 62
Query: 65 SSSAKAMMDEF 75
+A +M +
Sbjct: 63 VKAADVVMKKL 73
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain
Of Human Sulfite Oxidase
Length = 82
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 7 VYTLAEVSGHNDRKD-CWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFE--DVG 63
+YT EVS H + W+ + +V+DVT+F+D HPGG L+ A G + V
Sbjct: 6 IYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVH 65
Query: 64 HSSSAKAMMDEFYVGDI 80
+ S + ++ ++ +G++
Sbjct: 66 NQSHVRELLAQYKIGEL 82
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 8 YTLAEVSGHNDRKD-CWLIIEGKVYDVTKFLDDHPGG-DEVLLSATG 52
YT EV H ++ W+ V+DVT F++ HPGG D++LL+A G
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG 53
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 8 YTLAEVSGHNDRKD-CWLIIEGKVYDVTKFLDDHPGG-DEVLLSATG 52
YT EV H ++ W+ V+DVT F++ HPGG D++LL+A G
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG 53
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 8 YTLAEVSGHNDRKD-CWLIIEGKVYDVTKFLDDHPGG-DEVLLSATG 52
YT EV H ++ W+ V+DVT F++ HPGG D++LL+A G
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG 53
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 8 YTLAEVSGHNDRKD-CWLIIEGKVYDVTKFLDDHPGG-DEVLLSATG 52
YT EV H ++ W+ V+DVT F++ HPGG D++LL+A G
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG 53
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 8 YTLAEVSGHNDRKD-CWLIIEGKVYDVTKFLDDHPGG-DEVLLSATG 52
YT EV H ++ W+ V+DVT F++ HPGG D++LL+A G
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG 53
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 8 YTLAEVSGHNDRKD-CWLIIEGKVYDVTKFLDDHPGG-DEVLLSATG 52
YT EV H ++ W+ V+DVT F++ HPGG D++LL+A G
Sbjct: 7 YTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGG 53
>pdb|2KEO|A Chain A, Solution Nmr Structure Of Human Protein Hs00059,
Cytochrome-B5-Like Domain Of The Herc2 E3 Ligase.
Northeast Structural Genomics Consortium (Nesg) Target
Ht98a
Length = 112
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%)
Query: 10 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAK 69
+A++ HN+ W +I+GKVYD+ F + +L G+D E +
Sbjct: 28 IADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTR 87
Query: 70 AMMDEFYVG 78
M F VG
Sbjct: 88 ESMHAFCVG 96
>pdb|1Q32|A Chain A, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|B Chain B, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|C Chain C, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
pdb|1Q32|D Chain D, Crystal Structure Analysis Of The Yeast Tyrosyl-Dna
Phosphodiesterase
Length = 544
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 10 LAEVSGHNDRKDCWLIIEGKVYDVT 34
+A V+ +ND DC ++ E K+ D+T
Sbjct: 37 MAPVNSNNDSDDCVIVSESKIIDLT 61
>pdb|1J03|A Chain A, Solution Structure Of A Putative Steroid-Binding Protein
From Arabidopsis
Length = 102
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 10 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDH-PGGDEVLLSATGKDAT 56
L++ +G ++ K ++ I+G+V+DVT + GGD + + GKDA+
Sbjct: 10 LSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFA--GKDAS 55
>pdb|1T0G|A Chain A, Hypothetical Protein At2g24940.1 From Arabidopsis
Thaliana Has A Cytochrome B5 Like Fold
Length = 109
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 10 LAEVSGHNDRKDCWLIIEGKVYDVTKFLDDH-PGGDEVLLSATGKDAT 56
L++ +G ++ K ++ I+G+V+DVT + GGD + + GKDA+
Sbjct: 17 LSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFA--GKDAS 62
>pdb|1VF5|D Chain D, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|1VF5|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex From
M.Laminosus
pdb|2D2C|D Chain D, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
pdb|2D2C|Q Chain Q, Crystal Structure Of Cytochrome B6f Complex With Dbmib
From M. Laminosus
Length = 179
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 28 GKVYDVTKFLDDHPGGDEVLLSATGKDAT 56
G V+KFL+ H GD VL+ D T
Sbjct: 61 GNNVKVSKFLESHNAGDRVLVQGLKGDPT 89
>pdb|2E74|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
M.Laminosus
pdb|2E75|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
2-nonyl-4- Hydroxyquinoline N-oxide (nqno) From
M.laminosus
pdb|2E76|D Chain D, Crystal Structure Of The Cytochrome B6f Complex With
Tridecyl- Stigmatellin (Tds) From M.Laminosus
pdb|4H0L|D Chain D, Cytochrome B6f Complex Crystal Structure From
Mastigocladus Laminosus With N-side Inhibitor Nqno
pdb|4H13|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From
Mastigocladus Laminosus With Tds
Length = 179
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 28 GKVYDVTKFLDDHPGGDEVLLSATGKDAT 56
G V+KFL+ H GD VL+ D T
Sbjct: 61 GNNVKVSKFLESHNAGDRVLVQGLKGDPT 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,052,725
Number of Sequences: 62578
Number of extensions: 149431
Number of successful extensions: 286
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 61
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)