Query 032750
Match_columns 134
No_of_seqs 157 out of 1345
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0537 Cytochrome b5 [Energy 100.0 5.5E-33 1.2E-37 195.9 4.1 86 4-89 3-88 (124)
2 PF00173 Cyt-b5: Cytochrome b5 99.9 3.7E-25 8E-30 142.6 4.6 75 7-81 1-76 (76)
3 KOG0536 Flavohemoprotein b5+b5 99.9 2.8E-24 6.1E-29 151.4 5.4 76 7-82 69-144 (145)
4 PLN03199 delta6-acyl-lipid des 99.8 3.1E-21 6.8E-26 162.4 8.3 79 4-85 22-100 (485)
5 PLN03198 delta6-acyl-lipid des 99.8 1.7E-21 3.7E-26 165.2 5.3 76 6-83 104-179 (526)
6 COG5274 CYB5 Cytochrome b invo 99.8 2.1E-20 4.5E-25 136.5 5.3 79 5-83 49-127 (164)
7 PLN02252 nitrate reductase [NA 99.8 3.3E-20 7.2E-25 165.0 6.7 81 5-86 517-597 (888)
8 KOG4232 Delta 6-fatty acid des 99.6 6.4E-16 1.4E-20 126.7 6.7 78 5-84 7-86 (430)
9 KOG4576 Sulfite oxidase, heme- 99.6 4E-16 8.7E-21 110.7 2.3 81 5-87 79-163 (167)
10 COG4892 Predicted heme/steroid 99.0 9.6E-10 2.1E-14 69.9 4.9 74 6-82 2-77 (81)
11 KOG1110 Putative steroid membr 98.1 6.1E-06 1.3E-10 61.4 4.5 54 5-60 55-112 (183)
12 KOG1108 Predicted heme/steroid 97.5 0.00011 2.4E-09 56.9 3.5 56 4-61 58-117 (281)
13 PF14901 Jiv90: Cleavage induc 90.0 0.19 4.1E-06 33.8 1.5 14 25-38 60-73 (94)
14 KOG0720 Molecular chaperone (D 72.7 1.5 3.3E-05 37.4 0.7 16 22-37 379-394 (490)
15 PHA02131 hypothetical protein 60.1 6.7 0.00014 24.1 1.6 15 21-35 30-45 (70)
16 PF11698 V-ATPase_H_C: V-ATPas 57.2 0.86 1.9E-05 32.0 -3.1 27 30-56 65-91 (119)
17 PRK14758 hypothetical protein; 49.2 36 0.00078 17.5 3.0 19 113-131 8-26 (27)
18 cd00256 VATPase_H VATPase_H, r 43.9 5 0.00011 34.0 -1.1 35 20-56 367-401 (429)
19 PF12955 DUF3844: Domain of un 42.9 50 0.0011 22.6 3.9 31 99-131 60-90 (103)
20 COG3424 BcsA Predicted naringe 42.8 9.4 0.0002 31.3 0.4 14 39-52 276-289 (356)
21 PRK10920 putative uroporphyrin 39.8 46 0.001 27.9 4.0 15 117-131 44-58 (390)
22 PF01708 Gemini_mov: Geminivir 38.8 23 0.00049 23.7 1.6 29 102-130 28-58 (91)
23 PRK06549 acetyl-CoA carboxylas 38.1 24 0.00052 25.0 1.8 13 22-34 5-17 (130)
24 PF15086 UPF0542: Uncharacteri 37.9 79 0.0017 20.3 3.9 25 105-129 20-44 (74)
25 TIGR03068 srtB_sig_NPQTN sorta 34.2 51 0.0011 17.8 2.3 18 113-130 12-29 (33)
26 PF02797 Chal_sti_synt_C: Chal 31.8 20 0.00043 25.9 0.6 16 36-51 62-77 (151)
27 COG3197 FixS Uncharacterized p 31.3 52 0.0011 20.2 2.2 16 113-128 5-20 (58)
28 PF04375 HemX: HemX; InterPro 31.1 1.4E+02 0.0031 24.5 5.6 10 121-130 41-50 (372)
29 PF09813 Coiled-coil_56: Coile 30.6 73 0.0016 21.7 3.1 20 112-131 50-69 (100)
30 TIGR03063 srtB_target sortase 29.8 86 0.0019 16.5 2.7 8 113-120 12-19 (29)
31 TIGR00847 ccoS cytochrome oxid 29.6 1E+02 0.0022 18.3 3.2 16 112-127 4-19 (51)
32 PF02046 COX6A: Cytochrome c o 27.2 1.9E+02 0.0042 20.0 4.9 26 102-127 39-65 (116)
33 PF04415 DUF515: Protein of un 27.0 1.3E+02 0.0029 25.5 4.7 17 115-131 38-54 (416)
34 PF12669 P12: Virus attachment 27.0 41 0.0009 20.3 1.3 8 115-122 3-10 (58)
35 PF05521 Phage_H_T_join: Phage 26.8 74 0.0016 19.7 2.6 17 21-37 66-82 (95)
36 COG4858 Uncharacterized membra 24.2 65 0.0014 24.7 2.1 14 120-133 201-214 (226)
37 PF03597 CcoS: Cytochrome oxid 23.3 1.4E+02 0.003 17.2 3.0 10 113-122 4-13 (45)
38 PF14283 DUF4366: Domain of un 23.0 58 0.0013 25.1 1.8 6 126-131 175-180 (218)
39 TIGR00261 traB pheromone shutd 22.5 1.4E+02 0.003 25.0 4.0 24 108-131 238-261 (380)
40 PF06692 MNSV_P7B: Melon necro 22.5 99 0.0021 18.9 2.3 12 113-124 12-23 (61)
41 PRK14578 elongation factor P; 22.4 83 0.0018 23.7 2.4 23 21-43 10-32 (187)
42 TIGR02148 Fibro_Slime fibro-sl 21.9 74 0.0016 21.2 1.9 21 15-35 23-44 (90)
43 TIGR00037 eIF_5A translation i 21.6 63 0.0014 22.7 1.6 42 8-55 7-50 (130)
44 PF00957 Synaptobrevin: Synapt 21.6 2.2E+02 0.0047 18.1 4.1 18 107-124 62-79 (89)
45 KOG2759 Vacuolar H+-ATPase V1 21.5 23 0.00049 30.2 -0.8 43 20-66 380-422 (442)
46 PRK03999 translation initiatio 21.2 59 0.0013 22.8 1.4 33 6-43 4-36 (129)
47 PHA03029 hypothetical protein; 21.0 2.1E+02 0.0046 18.6 3.8 15 109-123 56-70 (92)
48 PF08207 EFP_N: Elongation fac 20.8 1E+02 0.0022 18.3 2.2 23 21-43 8-30 (58)
49 PF10618 Tail_tube: Phage tail 20.7 86 0.0019 21.7 2.1 25 20-44 7-31 (119)
No 1
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=99.97 E-value=5.5e-33 Score=195.93 Aligned_cols=86 Identities=56% Similarity=1.066 Sum_probs=80.9
Q ss_pred CCCccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCHHHHhccccceeeeecCC
Q 032750 4 EGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 83 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~~a~~~l~~~~VG~l~~~ 83 (134)
..+.||.+||++||+.++|||+|+|+|||||+|+++||||.++|+.+||+|+|+.|++.+||..|++||++|+||.+..+
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~ 82 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTT 82 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCC
Q 032750 84 TVPTKT 89 (134)
Q Consensus 84 ~~~~~~ 89 (134)
..+...
T Consensus 83 ~~~~~~ 88 (124)
T KOG0537|consen 83 ARPVVW 88 (124)
T ss_pred Ccccee
Confidence 665443
No 2
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.91 E-value=3.7e-25 Score=142.58 Aligned_cols=75 Identities=52% Similarity=0.947 Sum_probs=69.6
Q ss_pred ccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCHHHHhcccc-ceeeeec
Q 032750 7 VYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDE-FYVGDID 81 (134)
Q Consensus 7 ~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~~a~~~l~~-~~VG~l~ 81 (134)
+||++||++|++++++||+|+|+|||||+|+..||||..++..++|+|+|..|....|+..+.++|++ |+||+|+
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 48999999999999999999999999999999999999999999999999999445699999999988 9999984
No 3
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.90 E-value=2.8e-24 Score=151.41 Aligned_cols=76 Identities=37% Similarity=0.692 Sum_probs=73.2
Q ss_pred ccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCHHHHhccccceeeeecC
Q 032750 7 VYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDS 82 (134)
Q Consensus 7 ~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~~a~~~l~~~~VG~l~~ 82 (134)
.+|.+||++|++.+|||++|+|+|||||.|++.||||.+.|+.++|+|+|..|+.+|.+.+..++|+.++||.+.+
T Consensus 69 ~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 69 PVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred ccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 6899999999999999999999999999999999999999999999999999999988999999999999998864
No 4
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.84 E-value=3.1e-21 Score=162.37 Aligned_cols=79 Identities=37% Similarity=0.750 Sum_probs=72.6
Q ss_pred CCCccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCHHHHhccccceeeeecCC
Q 032750 4 EGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 83 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~~a~~~l~~~~VG~l~~~ 83 (134)
..+.+|++||++|+++++||++|+|+|||||+|. .||||. +|..++|+|+|+.|+.+ |+..++++|++|+||++.++
T Consensus 22 ~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~iG~l~~~ 98 (485)
T PLN03199 22 KPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAF-HAPGSQALMKKFYIGDLIPE 98 (485)
T ss_pred cCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHh-cCHHHHHHHHhccccccccc
Confidence 3578999999999999999999999999999997 899998 78899999999999997 89999999999999999765
Q ss_pred CC
Q 032750 84 TV 85 (134)
Q Consensus 84 ~~ 85 (134)
+.
T Consensus 99 ~~ 100 (485)
T PLN03199 99 ST 100 (485)
T ss_pred cc
Confidence 43
No 5
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.84 E-value=1.7e-21 Score=165.21 Aligned_cols=76 Identities=43% Similarity=0.911 Sum_probs=71.9
Q ss_pred CccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCHHHHhccccceeeeecCC
Q 032750 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 83 (134)
Q Consensus 6 ~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~~a~~~l~~~~VG~l~~~ 83 (134)
+.+|++|+++|+++++|||+|+|+|||||+|++.||||. +|..++|+|+|+.|+.+ |+..+.++|++|+||+++..
T Consensus 104 ~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~IG~l~~~ 179 (526)
T PLN03198 104 KSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSF-HAASTWKILQDFYIGDVDNV 179 (526)
T ss_pred CcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHh-cCHHHHHHHhhCcceecCCc
Confidence 589999999999999999999999999999999999998 88999999999999997 88888899999999999754
No 6
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.81 E-value=2.1e-20 Score=136.52 Aligned_cols=79 Identities=42% Similarity=0.853 Sum_probs=75.2
Q ss_pred CCccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCHHHHhccccceeeeecCC
Q 032750 5 GKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 83 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~~a~~~l~~~~VG~l~~~ 83 (134)
.+.++.+|+.+|+++++|||+|+|+|||||.|+.+||||.++|+.++|+|+|..|...+|+..+.++++.++||.+...
T Consensus 49 ~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 49 PKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred cccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeecccCc
Confidence 3679999999999999999999999999999999999999999999999999999999999999999999999998754
No 7
>PLN02252 nitrate reductase [NADPH]
Probab=99.81 E-value=3.3e-20 Score=165.03 Aligned_cols=81 Identities=40% Similarity=0.919 Sum_probs=76.2
Q ss_pred CCccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCHHHHhccccceeeeecCCC
Q 032750 5 GKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 84 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~~a~~~l~~~~VG~l~~~~ 84 (134)
.+.||++||++|++.++||++|+|+|||+|+|++.||||.++|+.++|+|+|+.|+.+ |+..|+++|++|+||.+....
T Consensus 517 ~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~-Hs~~a~~~L~~~~IG~l~~~~ 595 (888)
T PLN02252 517 SKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELVTTG 595 (888)
T ss_pred cceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhh-hhHHHHHHHHhCcCCcccccc
Confidence 5789999999999999999999999999999999999999999999999999999987 999999999999999998665
Q ss_pred CC
Q 032750 85 VP 86 (134)
Q Consensus 85 ~~ 86 (134)
..
T Consensus 596 ~~ 597 (888)
T PLN02252 596 AA 597 (888)
T ss_pred cc
Confidence 43
No 8
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.62 E-value=6.4e-16 Score=126.69 Aligned_cols=78 Identities=29% Similarity=0.684 Sum_probs=70.3
Q ss_pred CCccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCHH--HHhccccceeeeecC
Q 032750 5 GKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSS--AKAMMDEFYVGDIDS 82 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~~--a~~~l~~~~VG~l~~ 82 (134)
.+.+|++++.+|++.++.|++|+| |||+|+|+..||||+.+|.+++|+|+|++|+++ |... +...++...+|...+
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~Af-H~~~~~~~~~l~~l~~~~~~p 84 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAF-HPGTAFAYKHLKPLLIGELSP 84 (430)
T ss_pred ceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHh-CCChHHHHHHHHHHHcCCcCc
Confidence 358999999999999999999999 999999999999999999999999999999997 5544 677889899998876
Q ss_pred CC
Q 032750 83 ST 84 (134)
Q Consensus 83 ~~ 84 (134)
+.
T Consensus 85 e~ 86 (430)
T KOG4232|consen 85 EI 86 (430)
T ss_pred cc
Confidence 53
No 9
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.59 E-value=4e-16 Score=110.68 Aligned_cols=81 Identities=36% Similarity=0.657 Sum_probs=67.0
Q ss_pred CCccCHHHHhccCCCC-CeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhh---cCCCHHHHhccccceeeee
Q 032750 5 GKVYTLAEVSGHNDRK-DCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFED---VGHSSSAKAMMDEFYVGDI 80 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~-~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~---~~hs~~a~~~l~~~~VG~l 80 (134)
++.|+.+||++|+++. ..||.+...|||||+|++.||||+++++.+ |. +-+.|+. .|....+.++|..|+||++
T Consensus 79 l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillAA-G~-a~dPFWalY~qHnt~eVlElLegyrIG~L 156 (167)
T KOG4576|consen 79 LHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLAA-GG-ALDPFWALYAQHNTSEVLELLEGYRIGEL 156 (167)
T ss_pred ccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeeeec-CC-CcCcHHHHHHHhhHHHHHHHHhhcccccC
Confidence 6799999999999665 799999999999999999999999877755 43 3344554 4667789999999999999
Q ss_pred cCCCCCC
Q 032750 81 DSSTVPT 87 (134)
Q Consensus 81 ~~~~~~~ 87 (134)
++.+.+.
T Consensus 157 ~~~dv~~ 163 (167)
T KOG4576|consen 157 NPEDVVA 163 (167)
T ss_pred Chhhccc
Confidence 9876554
No 10
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.98 E-value=9.6e-10 Score=69.94 Aligned_cols=74 Identities=26% Similarity=0.411 Sum_probs=55.9
Q ss_pred CccCHHHHhccCCC-CCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhc-CCCHHHHhccccceeeeecC
Q 032750 6 KVYTLAEVSGHNDR-KDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDV-GHSSSAKAMMDEFYVGDIDS 82 (134)
Q Consensus 6 ~~~t~~ev~~h~~~-~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~-~hs~~a~~~l~~~~VG~l~~ 82 (134)
++||.+||.+.|.+ +..+|+++|+||||+.-. ..-+|...-.+-+|+|+|++|++. .|-....+-++ .||.+..
T Consensus 2 refTLEELs~ynG~nGpaYiA~~G~VYDvS~s~-~W~dGtHqglhsaG~DLs~~~~~~aphg~eil~~~P--vVG~L~k 77 (81)
T COG4892 2 REFTLEELSKYNGENGPAYIAVNGTVYDVSLSP-SWGDGTHQGLHSAGKDLSSEFNSCAPHGMEILTSLP--VVGALIK 77 (81)
T ss_pred ceecHHHHHhhcCCCCCeEEEECCEEEeeccCc-ccCCCccccccccchhHHHHHhhcCCchhHHHhcCc--hhheeec
Confidence 67999999999955 479999999999998632 244566666678999999999964 45555555554 6787754
No 11
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=98.05 E-value=6.1e-06 Score=61.38 Aligned_cols=54 Identities=33% Similarity=0.434 Sum_probs=43.1
Q ss_pred CCccCHHHHhccCCCC---CeEEEEcCEEeeccc-ccccCCCchhHhhhccCCCCchhhh
Q 032750 5 GKVYTLAEVSGHNDRK---DCWLIIEGKVYDVTK-FLDDHPGGDEVLLSATGKDATDDFE 60 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~---~~wv~i~g~VYDvt~-f~~~HPGG~~~l~~~aGkD~T~~f~ 60 (134)
.+.||.+||++.+... ..+++|+|+|||||. -.-.-|||. .-.+||+||+..+.
T Consensus 55 ~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~Gp--Y~~fAG~DASR~La 112 (183)
T KOG1110|consen 55 VRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGP--YSLFAGKDASRGLA 112 (183)
T ss_pred ccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCC--chhhcccchHHHHH
Confidence 3479999999998443 688999999999996 223578887 56789999998754
No 12
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=97.48 E-value=0.00011 Score=56.87 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=43.8
Q ss_pred CCCccCHHHHhccCCCC---CeEEEEcCEEeeccccc-ccCCCchhHhhhccCCCCchhhhh
Q 032750 4 EGKVYTLAEVSGHNDRK---DCWLIIEGKVYDVTKFL-DDHPGGDEVLLSATGKDATDDFED 61 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~---~~wv~i~g~VYDvt~f~-~~HPGG~~~l~~~aGkD~T~~f~~ 61 (134)
+...||++||+..|... ..++.|-|.||||+.=. ..-||+. ..+|+|+|+|.+|-.
T Consensus 58 ~k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~s--YnhFaGRDASrAFvs 117 (281)
T KOG1108|consen 58 DKILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGCS--YNHFAGRDASRAFVS 117 (281)
T ss_pred CceeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCCC--cccccccccchheec
Confidence 34589999999998433 58889999999998732 3445554 789999999999853
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=89.97 E-value=0.19 Score=33.84 Aligned_cols=14 Identities=43% Similarity=0.928 Sum_probs=12.0
Q ss_pred EEcCEEeecccccc
Q 032750 25 IIEGKVYDVTKFLD 38 (134)
Q Consensus 25 ~i~g~VYDvt~f~~ 38 (134)
..+|+|||+|+|+.
T Consensus 60 c~~g~VyDiTeWA~ 73 (94)
T PF14901_consen 60 CMDGKVYDITEWAT 73 (94)
T ss_pred EcCceEEehhhhhh
Confidence 56999999999873
No 14
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=72.65 E-value=1.5 Score=37.37 Aligned_cols=16 Identities=38% Similarity=0.862 Sum_probs=13.5
Q ss_pred eEEEEcCEEeeccccc
Q 032750 22 CWLIIEGKVYDVTKFL 37 (134)
Q Consensus 22 ~wv~i~g~VYDvt~f~ 37 (134)
.+++-+|+|||+|+|.
T Consensus 379 yy~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 379 YYACMDGKVYDITEWA 394 (490)
T ss_pred eeeecCCceEeehhhh
Confidence 4456799999999998
No 15
>PHA02131 hypothetical protein
Probab=60.13 E-value=6.7 Score=24.10 Aligned_cols=15 Identities=33% Similarity=0.924 Sum_probs=12.7
Q ss_pred CeEEEE-cCEEeeccc
Q 032750 21 DCWLII-EGKVYDVTK 35 (134)
Q Consensus 21 ~~wv~i-~g~VYDvt~ 35 (134)
.||+.+ +|+|-|+|=
T Consensus 30 ~c~imfk~~~v~dctf 45 (70)
T PHA02131 30 SCWIMFKNDQVIDCTF 45 (70)
T ss_pred EEEEEEcCCCEEEeee
Confidence 699987 889999973
No 16
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.20 E-value=0.86 Score=31.97 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=22.3
Q ss_pred EeecccccccCCCchhHhhhccCCCCc
Q 032750 30 VYDVTKFLDDHPGGDEVLLSATGKDAT 56 (134)
Q Consensus 30 VYDvt~f~~~HPGG~~~l~~~aGkD~T 56 (134)
-+|+..|+..||.|..++....+|+.-
T Consensus 65 c~Dig~~vr~~p~gr~ii~~lg~K~~v 91 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNIIEKLGAKERV 91 (119)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHSHHHHH
T ss_pred hcchHHHHHHChhHHHHHHhcChHHHH
Confidence 379999999999999999888877654
No 17
>PRK14758 hypothetical protein; Provisional
Probab=49.21 E-value=36 Score=17.50 Aligned_cols=19 Identities=37% Similarity=0.739 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032750 113 QFLVPLLILGLAVGIRFYT 131 (134)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~ 131 (134)
..++.++|+.+.++.++|.
T Consensus 8 EliLivlIlCalia~~fy~ 26 (27)
T PRK14758 8 EFILIILILCALIAARFYL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3444555666667888775
No 18
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=43.89 E-value=5 Score=34.02 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=28.5
Q ss_pred CCeEEEEcCEEeecccccccCCCchhHhhhccCCCCc
Q 032750 20 KDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDAT 56 (134)
Q Consensus 20 ~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T 56 (134)
+..+++|- -+|+..|+..||.|..++....||+..
T Consensus 367 d~~~laVA--c~Dige~vr~~P~gr~i~~~lg~K~~v 401 (429)
T cd00256 367 DPIILAVA--CHDIGEYVRHYPRGKDVVEQLGGKQRV 401 (429)
T ss_pred Ccceeehh--hhhHHHHHHHCccHHHHHHHcCcHHHH
Confidence 44566554 489999999999999999999888764
No 19
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=42.93 E-value=50 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=17.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032750 99 YNQDKTPEFIIKLLQFLVPLLILGLAVGIRFYT 131 (134)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (134)
+++|-+.++|. ..|...++++++++++.+++
T Consensus 60 qKkDvS~~F~L--~~~~ti~lv~~~~~~I~lL~ 90 (103)
T PF12955_consen 60 QKKDVSVPFWL--FAGFTIALVVLVAGAIGLLF 90 (103)
T ss_pred ccccccchhhH--HHHHHHHHHHHHHHHHHHHH
Confidence 45566677774 44555555566666666443
No 20
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.75 E-value=9.4 Score=31.32 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=12.0
Q ss_pred cCCCchhHhhhccC
Q 032750 39 DHPGGDEVLLSATG 52 (134)
Q Consensus 39 ~HPGG~~~l~~~aG 52 (134)
.||||.++|..+.+
T Consensus 276 ~HPGG~KVida~~~ 289 (356)
T COG3424 276 VHPGGPKVIDAYEE 289 (356)
T ss_pred eCCCCchHHHHHHH
Confidence 69999999988765
No 21
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=39.80 E-value=46 Score=27.89 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHh
Q 032750 117 PLLILGLAVGIRFYT 131 (134)
Q Consensus 117 ~~~~~~~~~~~~~~~ 131 (134)
.+++++++-|+|||.
T Consensus 44 ili~la~g~g~y~~~ 58 (390)
T PRK10920 44 IAIALAAGAGLYYHG 58 (390)
T ss_pred HHHHHHHhhHHHHHH
Confidence 333556666777764
No 22
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=38.76 E-value=23 Score=23.69 Aligned_cols=29 Identities=7% Similarity=0.092 Sum_probs=15.9
Q ss_pred CCCchHHHHHHHHHHHHH--HHHHHHHHHHH
Q 032750 102 DKTPEFIIKLLQFLVPLL--ILGLAVGIRFY 130 (134)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 130 (134)
+.+.-+|++++..++.++ +++++++|..+
T Consensus 28 ~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~f 58 (91)
T PF01708_consen 28 SSSGLPWSRVVEVAIFTLVAVGCLYLAYTWF 58 (91)
T ss_pred CCCCCcceeEeeeeehHHHHHHHHHHHHHHH
Confidence 344556777766544444 34455555544
No 23
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=38.09 E-value=24 Score=24.99 Aligned_cols=13 Identities=38% Similarity=0.504 Sum_probs=11.2
Q ss_pred eEEEEcCEEeecc
Q 032750 22 CWLIIEGKVYDVT 34 (134)
Q Consensus 22 ~wv~i~g~VYDvt 34 (134)
.-|.+||++|||+
T Consensus 5 ~~itvng~~y~V~ 17 (130)
T PRK06549 5 FKITIDGKEYLVE 17 (130)
T ss_pred EEEEECCEEEEEE
Confidence 4578999999996
No 24
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=37.92 E-value=79 Score=20.29 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 032750 105 PEFIIKLLQFLVPLLILGLAVGIRF 129 (134)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (134)
-++...+.-.+.|+.|+++++.+++
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkL 44 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKL 44 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444455667888888888887764
No 25
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=34.21 E-value=51 Score=17.80 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032750 113 QFLVPLLILGLAVGIRFY 130 (134)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~ 130 (134)
-++||++.+++.+....+
T Consensus 12 ~y~Ip~v~lflL~~~~i~ 29 (33)
T TIGR03068 12 IYAIPVASLALLIAITLF 29 (33)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 467777664443333333
No 26
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=31.81 E-value=20 Score=25.88 Aligned_cols=16 Identities=38% Similarity=0.729 Sum_probs=11.2
Q ss_pred ccccCCCchhHhhhcc
Q 032750 36 FLDDHPGGDEVLLSAT 51 (134)
Q Consensus 36 f~~~HPGG~~~l~~~a 51 (134)
|..-||||.++|....
T Consensus 62 ~wavHPGG~~ILd~v~ 77 (151)
T PF02797_consen 62 FWAVHPGGRKILDAVE 77 (151)
T ss_dssp EEEEE-SSHHHHHHHH
T ss_pred eeeecCChHHHHHHHH
Confidence 3446999999987665
No 27
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=31.25 E-value=52 Score=20.17 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 032750 113 QFLVPLLILGLAVGIR 128 (134)
Q Consensus 113 ~~~~~~~~~~~~~~~~ 128 (134)
++++|+.++++++++.
T Consensus 5 ~~Lipvsi~l~~v~l~ 20 (58)
T COG3197 5 YILIPVSILLGAVGLG 20 (58)
T ss_pred eeHHHHHHHHHHHHHH
Confidence 4778888655544444
No 28
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=31.09 E-value=1.4e+02 Score=24.55 Aligned_cols=10 Identities=30% Similarity=0.627 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 032750 121 LGLAVGIRFY 130 (134)
Q Consensus 121 ~~~~~~~~~~ 130 (134)
++++.+++||
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 4455555555
No 29
>PF09813 Coiled-coil_56: Coiled-coil domain-containing protein 56; InterPro: IPR018628 Members of this family of proteins have no known function.
Probab=30.56 E-value=73 Score=21.66 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 032750 112 LQFLVPLLILGLAVGIRFYT 131 (134)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~ 131 (134)
...++.+.++++++++|.|+
T Consensus 50 rN~~Tgl~L~~~v~gIY~YT 69 (100)
T PF09813_consen 50 RNLLTGLALGAFVVGIYAYT 69 (100)
T ss_pred hhHHHHHHHHHHHHHHHhhe
Confidence 34677777888888888775
No 30
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=29.84 E-value=86 Score=16.46 Aligned_cols=8 Identities=25% Similarity=0.206 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 032750 113 QFLVPLLI 120 (134)
Q Consensus 113 ~~~~~~~~ 120 (134)
-|++++++
T Consensus 12 ly~~l~~~ 19 (29)
T TIGR03063 12 LYAVLFLG 19 (29)
T ss_pred HHHHHHHH
Confidence 35555443
No 31
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=29.56 E-value=1e+02 Score=18.34 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 032750 112 LQFLVPLLILGLAVGI 127 (134)
Q Consensus 112 ~~~~~~~~~~~~~~~~ 127 (134)
..+++|+.++.+++++
T Consensus 4 l~~LIpiSl~l~~~~l 19 (51)
T TIGR00847 4 LTILIPISLLLGGVGL 19 (51)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578888854433333
No 32
>PF02046 COX6A: Cytochrome c oxidase subunit VIa; InterPro: IPR001349 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as VIa in vertebrates and fungi. Mammals have two tissue-specific isoforms of VIa, a liver and a heart form. Only one form is found in fish [].; GO: 0004129 cytochrome-c oxidase activity, 0005743 mitochondrial inner membrane, 0005751 mitochondrial respiratory chain complex IV; PDB: 2DYR_G 2EIM_G 2Y69_T 1OCC_G 3AG4_G 3AG2_G 3ASN_G 3ABL_G 1V55_T 2EIJ_T ....
Probab=27.24 E-value=1.9e+02 Score=19.98 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=16.2
Q ss_pred CCCchHHHHHHHH-HHHHHHHHHHHHH
Q 032750 102 DKTPEFIIKLLQF-LVPLLILGLAVGI 127 (134)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~~~~~~ 127 (134)
...+..|.++..+ .+|.++++.+-+|
T Consensus 39 ~~~~~~Wk~iS~~v~iP~i~l~~~n~~ 65 (116)
T PF02046_consen 39 EETAKLWKKISFFVAIPAIALCMLNAY 65 (116)
T ss_dssp SSSHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557789888764 5676665554333
No 33
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=27.02 E-value=1.3e+02 Score=25.53 Aligned_cols=17 Identities=12% Similarity=0.422 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032750 115 LVPLLILGLAVGIRFYT 131 (134)
Q Consensus 115 ~~~~~~~~~~~~~~~~~ 131 (134)
++.+++++++++.|+|.
T Consensus 38 Vl~iIii~~~~~~Y~~~ 54 (416)
T PF04415_consen 38 VLIIIIIFIVYNIYYFL 54 (416)
T ss_pred hHhHHHHHHHHHHHHHh
Confidence 34444555555555543
No 34
>PF12669 P12: Virus attachment protein p12 family
Probab=26.99 E-value=41 Score=20.34 Aligned_cols=8 Identities=25% Similarity=0.766 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 032750 115 LVPLLILG 122 (134)
Q Consensus 115 ~~~~~~~~ 122 (134)
+|.+++++
T Consensus 3 II~~Ii~~ 10 (58)
T PF12669_consen 3 IIGIIILA 10 (58)
T ss_pred eHHHHHHH
Confidence 34444333
No 35
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=26.81 E-value=74 Score=19.68 Aligned_cols=17 Identities=29% Similarity=0.558 Sum_probs=12.0
Q ss_pred CeEEEEcCEEeeccccc
Q 032750 21 DCWLIIEGKVYDVTKFL 37 (134)
Q Consensus 21 ~~wv~i~g~VYDvt~f~ 37 (134)
+..|.++|++|++....
T Consensus 66 ~~ri~~~g~~y~I~~i~ 82 (95)
T PF05521_consen 66 DMRIKYDGKVYNIKSID 82 (95)
T ss_dssp TEEEEECTEEEEE-S--
T ss_pred ceEEEECCEEEEEEEEC
Confidence 45678999999999843
No 36
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=24.21 E-value=65 Score=24.70 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhcC
Q 032750 120 ILGLAVGIRFYTKS 133 (134)
Q Consensus 120 ~~~~~~~~~~~~~~ 133 (134)
+.+++||+|||.++
T Consensus 201 iGav~lalRfylkk 214 (226)
T COG4858 201 IGAVILALRFYLKK 214 (226)
T ss_pred HHHHHHHHHHHHHH
Confidence 56788899988754
No 37
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=23.33 E-value=1.4e+02 Score=17.17 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=6.3
Q ss_pred HHHHHHHHHH
Q 032750 113 QFLVPLLILG 122 (134)
Q Consensus 113 ~~~~~~~~~~ 122 (134)
.+++|+.++.
T Consensus 4 ~~lip~sl~l 13 (45)
T PF03597_consen 4 YILIPVSLIL 13 (45)
T ss_pred hHHHHHHHHH
Confidence 5677877433
No 38
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=23.04 E-value=58 Score=25.10 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=2.8
Q ss_pred HHHHHh
Q 032750 126 GIRFYT 131 (134)
Q Consensus 126 ~~~~~~ 131 (134)
|.+||+
T Consensus 175 Ga~yYf 180 (218)
T PF14283_consen 175 GAYYYF 180 (218)
T ss_pred ceEEEE
Confidence 444444
No 39
>TIGR00261 traB pheromone shutdown-related protein TraB. traB is a plasmid encoded gene that functions in the shutdown of the peptide sex pheromone cPD1 which is produced by the plasmid free recipient cell prior to conjugative transfer in Enterococcus faecalis. Once the recipient acquires the plasmid, production of cPD1 is shut down. The gene product may play another role in the other species in the family.
Probab=22.55 E-value=1.4e+02 Score=25.02 Aligned_cols=24 Identities=38% Similarity=0.596 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 032750 108 IIKLLQFLVPLLILGLAVGIRFYT 131 (134)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~ 131 (134)
+.|+.-|++|++++++...+-+|.
T Consensus 238 ~~k~~~~~i~~~i~~~~~~~~~~~ 261 (380)
T TIGR00261 238 FSKVLSYLIAISIILLFVMISFYL 261 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 347888999999877754344543
No 40
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=22.45 E-value=99 Score=18.85 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 032750 113 QFLVPLLILGLA 124 (134)
Q Consensus 113 ~~~~~~~~~~~~ 124 (134)
++..|++++.+.
T Consensus 12 d~~~~lLiliis 23 (61)
T PF06692_consen 12 DYSGPLLILIIS 23 (61)
T ss_pred cchhHHHHHHHH
Confidence 355666644433
No 41
>PRK14578 elongation factor P; Provisional
Probab=22.36 E-value=83 Score=23.67 Aligned_cols=23 Identities=9% Similarity=0.101 Sum_probs=19.9
Q ss_pred CeEEEEcCEEeecccccccCCCc
Q 032750 21 DCWLIIEGKVYDVTKFLDDHPGG 43 (134)
Q Consensus 21 ~~wv~i~g~VYDvt~f~~~HPGG 43 (134)
..++.++|..|-|.+|....||+
T Consensus 10 G~~i~~dg~~~~V~~~~~~kpg~ 32 (187)
T PRK14578 10 GLVIQLDGAPCLLLDVTFQSPSA 32 (187)
T ss_pred CCEEEECCEEEEEEEEEEEcCCC
Confidence 57889999999999998778964
No 42
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=21.85 E-value=74 Score=21.20 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=15.5
Q ss_pred ccCCCCCeEEEEcCE-Eeeccc
Q 032750 15 GHNDRKDCWLIIEGK-VYDVTK 35 (134)
Q Consensus 15 ~h~~~~~~wv~i~g~-VYDvt~ 35 (134)
.-..++|.||-|+|+ |.|+-.
T Consensus 23 ~F~GDDDvWVFIn~kLv~DlGG 44 (90)
T TIGR02148 23 EFRGDDDVWVFINNKLVVDIGG 44 (90)
T ss_pred EEEcCCeEEEEECCEEEEEccC
Confidence 345788999999886 566644
No 43
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=21.64 E-value=63 Score=22.73 Aligned_cols=42 Identities=12% Similarity=0.323 Sum_probs=29.0
Q ss_pred cCHHHHhccCCCCCeEEEEcCEEeecccccccCCC--chhHhhhccCCCC
Q 032750 8 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPG--GDEVLLSATGKDA 55 (134)
Q Consensus 8 ~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPG--G~~~l~~~aGkD~ 55 (134)
.+.++|++ ...+.++|..|-|.++....|| |.. +.+..++|+
T Consensus 7 ~~~~~irk-----G~~i~~~g~p~~V~e~~~~kpGkhG~A-~vr~k~knl 50 (130)
T TIGR00037 7 VQVSALRV-----GGYVVIDGRPCKIVDISTSKPGKHGHA-KARVVAIGI 50 (130)
T ss_pred ccHHHccC-----CCEEEECCEEEEEEEEEecCCCCCCcE-EEEEEEEEC
Confidence 55566655 4678899999999999877798 443 334444443
No 44
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.58 E-value=2.2e+02 Score=18.06 Aligned_cols=18 Identities=6% Similarity=0.257 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032750 107 FIIKLLQFLVPLLILGLA 124 (134)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~ 124 (134)
+|.+.-.+++.++++++.
T Consensus 62 ~~~~~k~~~i~~~iv~~~ 79 (89)
T PF00957_consen 62 WWRNYKLYIIIIIIVIII 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhhhhhh
Confidence 444333333333333333
No 45
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=21.50 E-value=23 Score=30.15 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=31.2
Q ss_pred CCeEEEEcCEEeecccccccCCCchhHhhhccCCCCchhhhhcCCCH
Q 032750 20 KDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSS 66 (134)
Q Consensus 20 ~~~wv~i~g~VYDvt~f~~~HPGG~~~l~~~aGkD~T~~f~~~~hs~ 66 (134)
+..|+++. -.|++.|+..||.|..++.++.||..- |+-.+|..
T Consensus 380 Dp~iL~VA--c~DIge~Vr~yP~gk~vv~k~ggKe~v--M~Llnh~d 422 (442)
T KOG2759|consen 380 DPIILCVA--CHDIGEYVRHYPEGKAVVEKYGGKERV--MNLLNHED 422 (442)
T ss_pred CCceeehh--hhhHHHHHHhCchHhHHHHHhchHHHH--HHHhcCCC
Confidence 35666553 369999999999999999999998532 44344543
No 46
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=21.23 E-value=59 Score=22.83 Aligned_cols=33 Identities=18% Similarity=0.479 Sum_probs=24.5
Q ss_pred CccCHHHHhccCCCCCeEEEEcCEEeecccccccCCCc
Q 032750 6 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGG 43 (134)
Q Consensus 6 ~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG 43 (134)
+..+.+++++ ...|.++|..|=|.++....||.
T Consensus 4 ~~~~~~~lrk-----G~~i~~~g~p~~V~~~~~~kpGk 36 (129)
T PRK03999 4 KQVEVGELKE-----GSYVVIDGEPCKIVEISKSKPGK 36 (129)
T ss_pred ccccHHHccC-----CCEEEECCEEEEEEEEEeecCCC
Confidence 4455566655 35678899999999998777883
No 47
>PHA03029 hypothetical protein; Provisional
Probab=21.04 E-value=2.1e+02 Score=18.56 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHH
Q 032750 109 IKLLQFLVPLLILGL 123 (134)
Q Consensus 109 ~~~~~~~~~~~~~~~ 123 (134)
.....|++|+.++|+
T Consensus 56 lnf~fwllp~al~a~ 70 (92)
T PHA03029 56 LNFLFWLLPFALAAA 70 (92)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345668888876554
No 48
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors. ; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.
Probab=20.75 E-value=1e+02 Score=18.33 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=18.9
Q ss_pred CeEEEEcCEEeecccccccCCCc
Q 032750 21 DCWLIIEGKVYDVTKFLDDHPGG 43 (134)
Q Consensus 21 ~~wv~i~g~VYDvt~f~~~HPGG 43 (134)
...+.++|..|=|.++...+||.
T Consensus 8 G~~i~~~g~~~~V~~~~~~k~gk 30 (58)
T PF08207_consen 8 GMVIEIDGEPYVVLDFQHVKPGK 30 (58)
T ss_dssp TSEEEETTEEEEEEEEEEECCTT
T ss_pred CCEEEECCEEEEEEEEEEECCCC
Confidence 45678899999999997777774
No 49
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=20.72 E-value=86 Score=21.68 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCeEEEEcCEEeecccccccCCCch
Q 032750 20 KDCWLIIEGKVYDVTKFLDDHPGGD 44 (134)
Q Consensus 20 ~~~wv~i~g~VYDvt~f~~~HPGG~ 44 (134)
+.++|.++|+-|++.+=....|||.
T Consensus 7 G~a~i~vdG~~l~~~~g~~~~~gg~ 31 (119)
T PF10618_consen 7 GTAYIRVDGQQLPVKGGATYNPGGV 31 (119)
T ss_pred EEEEEEECCEEEEccCCeEECCCCe
Confidence 5689999999999998777888885
Done!