BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032751
         (134 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IBV|B Chain B, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase Bound With Histidine Methyl Ester At-170
          C
 pdb|1IBV|D Chain D, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase Bound With Histidine Methyl Ester At-170
          C
 pdb|1IBV|F Chain F, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase Bound With Histidine Methyl Ester At-170
          C
 pdb|1IBW|B Chain B, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase Bound With Histidine Methyl Ester At 25 C
 pdb|1IBW|D Chain D, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase Bound With Histidine Methyl Ester At 25 C
 pdb|1IBW|F Chain F, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase Bound With Histidine Methyl Ester At 25 C
          Length = 228

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 45 RDTPAPFSCVYCGNSGVTQVRSK 67
          R  PAP S + C N GVT  R K
Sbjct: 59 RHYPAPGSFIVCANKGVTAERPK 81


>pdb|1HQ6|B Chain B, Structure Of Pyruvoyl-dependent Histidine Decarboxylase
          At Ph 8
 pdb|1HQ6|D Chain D, Structure Of Pyruvoyl-dependent Histidine Decarboxylase
          At Ph 8
 pdb|1IBT|B Chain B, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase At-170 C
 pdb|1IBT|D Chain D, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase At-170 C
 pdb|1IBT|F Chain F, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase At-170 C
 pdb|1IBU|B Chain B, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase At 25 C
 pdb|1IBU|D Chain D, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase At 25 C
 pdb|1IBU|F Chain F, Structure Of The D53,54n Mutant Of Histidine
          Decarboxylase At 25 C
 pdb|1PYA|B Chain B, Refined Structure Of The Pyruvoyl-Dependent Histidine
          Decarboxylase From Lactobacillus 30a
 pdb|1PYA|D Chain D, Refined Structure Of The Pyruvoyl-Dependent Histidine
          Decarboxylase From Lactobacillus 30a
 pdb|1PYA|F Chain F, Refined Structure Of The Pyruvoyl-Dependent Histidine
          Decarboxylase From Lactobacillus 30a
          Length = 229

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 45 RDTPAPFSCVYCGNSGVTQVRSK 67
          R  PAP S + C N GVT  R K
Sbjct: 60 RHYPAPGSFIVCANKGVTAERPK 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.140    0.483 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,497,445
Number of Sequences: 62578
Number of extensions: 171687
Number of successful extensions: 331
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 2
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)