BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032751
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPK0|AB8A_ARATH ABC transporter A family member 8 OS=Arabidopsis thaliana GN=ABCA8
PE=2 SV=3
Length = 901
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 78 MPFFLGICFLCPSM--DCLWHKYHYCPSCNEKVANF-----EKRDICAVMDPPHWTQLSF 130
+PFFL + L M D ++ H CNEK E+ CA+ +PP WT L
Sbjct: 37 IPFFLCLLLLVIQMLFDTQFNDVHGQCGCNEKTCGLRYSTSEQAAFCAIPNPPQWTPL-L 95
Query: 131 ALPA 134
+PA
Sbjct: 96 QIPA 99
>sp|Q8QGW7|LITAF_CHICK Lipopolysaccharide-induced tumor necrosis factor-alpha factor
homolog OS=Gallus gallus GN=LITAF PE=2 SV=1
Length = 148
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 16 GQNPYQ-KGEIPPNAILGDPMGIPIQQ--TIYRDTPAPFSCVYCGNSGVTQVRSKPSSAA 72
G NP Q G+ P + + +QQ ++ D P SC C VT++ + +
Sbjct: 43 GMNPPQYSGQPMPTSTPVTVQTVYVQQPVVLFYDRPVQMSCPSCNQMIVTRLCYESGALT 102
Query: 73 VVGCMMPFFLGI---CFLCP-SMDCLWHKYHYCPSCNEKVANFEK 113
+ C F LG C L P +D L H+CP+CN V ++++
Sbjct: 103 WLSCGGLFLLGCIAGCCLIPFCVDALKDVEHFCPNCNAHVGSYKR 147
>sp|Q06561|UNC52_CAEEL Basement membrane proteoglycan OS=Caenorhabditis elegans GN=unc-52
PE=1 SV=2
Length = 3375
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 18 NPYQKGEIPPNAILGD-----PMGIPIQQTIYRDTPAPFSCVYCGNSGVTQVRSKPSSA 71
N Y G+ PP + P PI+QT+ RD PA F C GNS V S+P A
Sbjct: 1298 NQYGTGQSPPAVLEVKKPVIPPKVDPIRQTVDRDQPARFKCWVPGNSNVQLRWSRPGGA 1356
>sp|P0C0T0|LITAF_RAT Lipopolysaccharide-induced tumor necrosis factor-alpha factor
homolog OS=Rattus norvegicus GN=Litaf PE=2 SV=1
Length = 161
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 16 GQNP--YQKGEIP-PNAILGDPMGIPIQQTI-YRDTPAPFSCVYCGNSGVTQVRSKPSSA 71
G NP Y +P PNA + +QQ I + D P C C VTQ+ +
Sbjct: 55 GMNPPSYYTQPVPVPNANAIAVQTVYVQQPISFYDRPIQMCCPSCNKMIVTQLSYNAGAL 114
Query: 72 AVVGC----MMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEK 113
+ C ++ G CF+ +D L HYCP+C + +++
Sbjct: 115 TWLSCGSLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKR 160
>sp|Q9JLJ0|LITAF_MOUSE Lipopolysaccharide-induced tumor necrosis factor-alpha factor
homolog OS=Mus musculus GN=Litaf PE=1 SV=1
Length = 161
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 16 GQNP--YQKGEIP-PNAILGDPMGIPIQQTI-YRDTPAPFSCVYCGNSGVTQVRSKPSSA 71
G NP Y +P PNA + +QQ + + D P C C VTQ+ +
Sbjct: 55 GMNPPSYYTQPVPVPNANAIAVQTVYVQQPVSFYDRPVQMCCPSCSKMIVTQLSYNAGAL 114
Query: 72 AVVGC----MMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEK 113
+ C ++ G CF+ +D L HYCP+C + +++
Sbjct: 115 TWLSCGSLCLLGCVAGCCFIPFCVDALQDVDHYCPNCKALLGTYKR 160
>sp|A2ANX9|ZN711_MOUSE Zinc finger protein 711 OS=Mus musculus GN=Znf711 PE=3 SV=1
Length = 761
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 19/91 (20%)
Query: 50 PFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPS-----------MDCLW-HK 97
P+ C YC Q K + G +P+ C CP +D HK
Sbjct: 532 PYQCQYCAFRCADQSNLKTHIKSKHGSNLPY---KCEHCPQAFGDERELQRHLDLFQGHK 588
Query: 98 YHYCPSCNEKVANFE--KRDICAV--MDPPH 124
H CP C+ K N KR I +V D PH
Sbjct: 589 THQCPHCDHKSTNSSDLKRHIISVHTKDFPH 619
>sp|Q4X0Z5|BRO1_ASPFU Vacuolar protein-sorting protein bro1 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=bro1 PE=3 SV=1
Length = 976
Score = 32.0 bits (71), Expect = 1.00, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 7 PVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQQTI--------YRDTPAPFS 52
P GV + GQ P+Q+G P + +PM P +I Y TPAP+S
Sbjct: 843 PPSGVSYMQGQ-PFQQGAAAPLSEGYNPMAYPAPTSISPPPSQQYYSSTPAPYS 895
>sp|A7Y7X5|ZN711_DANRE Zinc finger protein 711 OS=Danio rerio GN=znf711 PE=1 SV=1
Length = 761
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 13/88 (14%)
Query: 50 PFSCVYCGNSGVTQVRSKPSSAAVVGCMMPFFLGICFLCPSMD---------CLWHKYHY 100
PF C +C S Q K + G +PF G C + D HK H
Sbjct: 532 PFHCQHCEFSCADQSNLKTHIKSKHGTDLPFKCGHCPQAFADDKELQRHAEIFQGHKTHQ 591
Query: 101 CPSCNEKVANFE--KRDICAV--MDPPH 124
CP C K N KR I +V D PH
Sbjct: 592 CPHCEHKSTNSSDLKRHIISVHTKDFPH 619
>sp|Q6P828|LITAF_XENTR Lipopolysaccharide-induced tumor necrosis factor-alpha factor
homolog OS=Xenopus tropicalis GN=litaf PE=2 SV=1
Length = 148
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 12/100 (12%)
Query: 26 PPNAILGDPMGIPIQ-QTIY-------RDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGC- 76
PP + PM P+ QT+Y D P C C + T++ + A + C
Sbjct: 48 PPYIVQPVPMQPPVTVQTVYVQQAMTLYDRPVQMCCRSCNSMITTRLEYSSGALAWLSCG 107
Query: 77 ---MMPFFLGICFLCPSMDCLWHKYHYCPSCNEKVANFEK 113
++ G C + +D L HYCP+C+ + ++++
Sbjct: 108 GLCLLGCIGGCCLIPFCIDSLKDVDHYCPNCHALLGSYKR 147
>sp|Q99732|LITAF_HUMAN Lipopolysaccharide-induced tumor necrosis factor-alpha factor
OS=Homo sapiens GN=LITAF PE=1 SV=2
Length = 161
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 44 YRDTPAPFSCVYCGNSGVTQVRSKPSSAAVVGC----MMPFFLGICFLCPSMDCLWHKYH 99
+ D P C C V+Q+ + + C ++ G CF+ +D L H
Sbjct: 87 FLDRPIQMCCPSCNKMIVSQLSYNAGALTWLSCGSLCLLGCIAGCCFIPFCVDALQDVDH 146
Query: 100 YCPSCNEKVANFEK 113
YCP+C + +++
Sbjct: 147 YCPNCRALLGTYKR 160
>sp|Q8CBY8|DCTN4_MOUSE Dynactin subunit 4 OS=Mus musculus GN=Dctn4 PE=1 SV=1
Length = 467
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 80 FFLGICFLCPSMDCLWHKY--HYCPSCNEKVANFE---KRDICA 118
+F C S++C+ H+ HYCPSC E + + E K++ CA
Sbjct: 28 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCA 71
>sp|Q9QUR2|DCTN4_RAT Dynactin subunit 4 OS=Rattus norvegicus GN=Dctn4 PE=2 SV=1
Length = 467
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 80 FFLGICFLCPSMDCLWHKY--HYCPSCNEKVANFE---KRDICA 118
+F C S++C+ H+ HYCPSC E + + E K++ CA
Sbjct: 28 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCA 71
>sp|Q9NS75|CLTR2_HUMAN Cysteinyl leukotriene receptor 2 OS=Homo sapiens GN=CYSLTR2 PE=2
SV=1
Length = 346
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 52 SCVYCGNSGVTQVRSKPSSAAVVGCMMPFF-LGICFL 87
SC+ + ++++ A VVGC++PFF L IC+L
Sbjct: 186 SCLELNLYKIAKLQTMNYIALVVGCLLPFFTLSICYL 222
>sp|Q9UJW0|DCTN4_HUMAN Dynactin subunit 4 OS=Homo sapiens GN=DCTN4 PE=1 SV=1
Length = 460
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 80 FFLGICFLCPSMDCLWHKY--HYCPSCNEKVANFE---KRDICA 118
+F C S++C+ H+ HYCPSC E + + E K++ CA
Sbjct: 28 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCA 71
>sp|Q5R7U7|DCTN4_PONAB Dynactin subunit 4 OS=Pongo abelii GN=DCTN4 PE=2 SV=1
Length = 460
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 80 FFLGICFLCPSMDCLWHKY--HYCPSCNEKVANFE---KRDICA 118
+F C S++C+ H+ HYCPSC E + + E K++ CA
Sbjct: 28 YFCRYCSELRSLECVSHEVDSHYCPSCLENMPSAEAKLKKNRCA 71
>sp|Q04545|TDA9_YEAST Probable transcription factor TDA9 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TDA9 PE=1 SV=1
Length = 1251
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 44/120 (36%), Gaps = 15/120 (12%)
Query: 7 PVVGVPFYVGQNPYQKGEIPPNAILGDPMGIPIQ-QTIYRDTPAPFSCVYCGNSGVTQVR 65
P + P VG K ++ P IP + +TI D P PF C C V Q
Sbjct: 25 PALSAPPCVGATGNDKIQVLP---------IPKKSRTIKTDKPRPFLCHICTRGFVRQEH 75
Query: 66 SKPSSAAVVGCMMPFFLGICFLCPSMDCL----WHKYHYCPSCNEKVANFEKRDICAVMD 121
K A PF C C + L HK H E + + +K +I A+ D
Sbjct: 76 LKRHQRAHTN-EKPFLCVFCGRCFARRDLVLRHQHKLHSALVSKESINSKDKTEIDAIND 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.483
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,363,720
Number of Sequences: 539616
Number of extensions: 2264580
Number of successful extensions: 5656
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5641
Number of HSP's gapped (non-prelim): 26
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)