Query 032751
Match_columns 134
No_of_seqs 126 out of 472
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 08:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayb_P DNA-directed RNA polyme 60.4 1.6 5.4E-05 26.5 -0.3 16 51-66 24-39 (48)
2 2jox_A Churchill protein; zinc 57.6 5.4 0.00019 27.8 2.0 18 97-114 56-73 (106)
3 1wii_A Hypothetical UPF0222 pr 47.4 7.5 0.00026 26.0 1.4 24 46-69 19-44 (85)
4 3lpe_B DNA-directed RNA polyme 42.3 10 0.00035 23.7 1.3 24 100-124 15-38 (59)
5 2k4x_A 30S ribosomal protein S 39.9 14 0.00048 22.5 1.7 11 98-108 36-46 (55)
6 1ryq_A DNA-directed RNA polyme 38.6 8.9 0.0003 24.8 0.6 24 100-123 25-48 (69)
7 2jrp_A Putative cytoplasmic pr 36.7 7.1 0.00024 26.0 -0.1 19 91-109 44-62 (81)
8 2jne_A Hypothetical protein YF 35.5 23 0.00078 24.5 2.4 14 49-62 31-44 (101)
9 1pft_A TFIIB, PFTFIIBN; N-term 35.4 24 0.0008 20.4 2.2 8 99-106 6-13 (50)
10 3mhs_C SAGA-associated factor 35.2 20 0.00069 24.7 2.0 17 94-110 66-82 (99)
11 3p8b_A DNA-directed RNA polyme 34.7 14 0.00049 24.5 1.2 25 100-124 37-61 (81)
12 2con_A RUH-035 protein, NIN on 34.2 15 0.00051 24.2 1.2 23 45-67 25-47 (79)
13 1vq8_Z 50S ribosomal protein L 31.5 33 0.0011 22.6 2.6 14 95-108 24-37 (83)
14 2lcq_A Putative toxin VAPC6; P 29.9 23 0.00078 25.2 1.7 14 100-113 150-163 (165)
15 1lv3_A Hypothetical protein YA 29.2 8.7 0.0003 24.8 -0.6 38 97-134 8-52 (68)
16 3w0f_A Endonuclease 8-like 3; 28.6 12 0.00041 30.1 -0.0 16 43-62 248-263 (287)
17 3vhs_A ATPase wrnip1; zinc fin 28.5 34 0.0012 18.1 1.8 13 49-61 5-17 (29)
18 3na7_A HP0958; flagellar bioge 27.7 24 0.00081 27.2 1.6 16 95-110 219-234 (256)
19 3j21_g 50S ribosomal protein L 27.1 26 0.00088 21.2 1.3 14 97-110 13-26 (51)
20 1qf8_A Casein kinase II; casei 25.4 34 0.0012 25.7 2.0 20 44-63 128-147 (182)
21 1qxf_A GR2, 30S ribosomal prot 23.8 63 0.0021 20.6 2.8 20 41-60 17-36 (66)
22 3j20_W 30S ribosomal protein S 22.9 68 0.0023 20.2 2.8 20 41-60 25-44 (63)
23 2jvx_A NF-kappa-B essential mo 21.8 44 0.0015 17.7 1.5 13 97-109 2-14 (28)
24 1twf_L ABC10-alpha, DNA-direct 21.3 35 0.0012 21.7 1.2 18 45-62 23-40 (70)
25 3fac_A Putative uncharacterize 21.1 56 0.0019 21.8 2.3 18 96-113 65-82 (118)
26 1dxg_A Desulforedoxin; non-hem 20.8 1.1E+02 0.0039 16.5 3.4 19 97-115 5-23 (36)
27 4esj_A Type-2 restriction enzy 20.6 27 0.00092 27.8 0.6 18 99-116 35-53 (257)
28 4dgl_A Casein kinase II subuni 20.4 50 0.0017 25.5 2.1 20 44-63 128-147 (215)
29 1vdd_A Recombination protein R 20.4 18 0.00062 28.4 -0.4 33 91-123 47-89 (228)
30 1vfy_A Phosphatidylinositol-3- 20.3 50 0.0017 20.6 1.8 13 96-108 25-37 (73)
31 1z2q_A LM5-1; membrane protein 20.3 51 0.0017 21.1 1.9 14 96-109 35-48 (84)
32 1x4u_A Zinc finger, FYVE domai 20.1 55 0.0019 20.9 2.0 13 96-108 28-40 (84)
No 1
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=60.39 E-value=1.6 Score=26.52 Aligned_cols=16 Identities=38% Similarity=0.787 Sum_probs=14.1
Q ss_pred EECCCCCCeEEeEEEE
Q 032751 51 FSCVYCGNSGVTQVRS 66 (134)
Q Consensus 51 ~~CP~C~~~v~T~V~~ 66 (134)
+.||+||-.+.++|+.
T Consensus 24 IrCpyCGyrii~KvR~ 39 (48)
T 4ayb_P 24 VRCPYCGYKIIFMVRK 39 (48)
T ss_dssp SCCTTTCCSCEECCCC
T ss_pred cccCccCcEEEEEecC
Confidence 7899999999998764
No 2
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=57.59 E-value=5.4 Score=27.81 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=14.8
Q ss_pred ceeECCCcCceeEEEecC
Q 032751 97 KYHYCPSCNEKVANFEKR 114 (134)
Q Consensus 97 v~H~Cp~C~~~lG~~~r~ 114 (134)
..|.|+||+.+|+++...
T Consensus 56 y~H~C~nC~HvIA~HeYt 73 (106)
T 2jox_A 56 YDHLCKNCHHVIARHEYT 73 (106)
T ss_dssp EEEEETTTCCEEEEEEEE
T ss_pred EEEecCCCceEeeeeeEE
Confidence 469999999999986543
No 3
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=47.37 E-value=7.5 Score=25.96 Aligned_cols=24 Identities=13% Similarity=0.452 Sum_probs=15.4
Q ss_pred CcCeeEECCCCCCe--EEeEEEEccC
Q 032751 46 DTPAPFSCVYCGNS--GVTQVRSKPS 69 (134)
Q Consensus 46 ~~P~~~~CP~C~~~--v~T~V~~~~g 69 (134)
.-|..+.||+||+. |.-++.++.|
T Consensus 19 ~L~t~F~CPfCnh~~sV~vkidk~~~ 44 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDVKMDRARN 44 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEEEETTTT
T ss_pred CCCCeEcCCCCCCCCeEEEEEEccCC
Confidence 44667899999998 4444444434
No 4
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=42.31 E-value=10 Score=23.65 Aligned_cols=24 Identities=21% Similarity=0.519 Sum_probs=19.8
Q ss_pred ECCCcCceeEEEecCCceEEeCCCC
Q 032751 100 YCPSCNEKVANFEKRDICAVMDPPH 124 (134)
Q Consensus 100 ~Cp~C~~~lG~~~r~~~~~~~~p~~ 124 (134)
-||||+..= +.+.++..++++|..
T Consensus 15 ~CpnC~~~t-t~~~~G~v~i~dP~~ 38 (59)
T 3lpe_B 15 ICPICHSPT-SENWIGLLIVINPEK 38 (59)
T ss_dssp BCTTTCCBE-ESCEECEEEESCTTT
T ss_pred CCCCCCCCc-cCCEeeEEEEeCCch
Confidence 699999864 677789999999873
No 5
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=39.91 E-value=14 Score=22.49 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=9.1
Q ss_pred eeECCCcCcee
Q 032751 98 YHYCPSCNEKV 108 (134)
Q Consensus 98 ~H~Cp~C~~~l 108 (134)
.|+|.+|+-..
T Consensus 36 r~~C~kCgyt~ 46 (55)
T 2k4x_A 36 RYSCGRCGYTE 46 (55)
T ss_dssp EEECTTTCCCE
T ss_pred EEECCCCCCEE
Confidence 88999998763
No 6
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=38.58 E-value=8.9 Score=24.78 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=18.4
Q ss_pred ECCCcCceeEEEecCCceEEeCCC
Q 032751 100 YCPSCNEKVANFEKRDICAVMDPP 123 (134)
Q Consensus 100 ~Cp~C~~~lG~~~r~~~~~~~~p~ 123 (134)
.||||+..==+-+.++..+++||.
T Consensus 25 ~CPnC~s~~tS~~w~G~ViI~dPe 48 (69)
T 1ryq_A 25 RCPVCGSRDLSEEWFDLVIIVDVE 48 (69)
T ss_dssp SCTTTCCCCEESCEEEEEEESCGG
T ss_pred cCCCccCCccCCccceEEEEeCCc
Confidence 599998664455677888888886
No 7
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=36.74 E-value=7.1 Score=25.97 Aligned_cols=19 Identities=5% Similarity=0.153 Sum_probs=11.8
Q ss_pred ccccCCceeECCCcCceeE
Q 032751 91 MDCLWHKYHYCPSCNEKVA 109 (134)
Q Consensus 91 ~d~ckDv~H~Cp~C~~~lG 109 (134)
+..|--+..+|.+|+.+|-
T Consensus 44 lkACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 44 LKACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp EEETTEEEECCTTTTCCCC
T ss_pred HHhcCCcCeeeccCCCEee
Confidence 3455555667777777665
No 8
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=35.50 E-value=23 Score=24.47 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=11.0
Q ss_pred eeEECCCCCCeEEe
Q 032751 49 APFSCVYCGNSGVT 62 (134)
Q Consensus 49 ~~~~CP~C~~~v~T 62 (134)
....||.|+++..-
T Consensus 31 M~~~CP~Cq~eL~~ 44 (101)
T 2jne_A 31 MELHCPQCQHVLDQ 44 (101)
T ss_dssp CCCBCSSSCSBEEE
T ss_pred ccccCccCCCccee
Confidence 45789999998664
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=35.42 E-value=24 Score=20.38 Aligned_cols=8 Identities=38% Similarity=1.344 Sum_probs=4.0
Q ss_pred eECCCcCc
Q 032751 99 HYCPSCNE 106 (134)
Q Consensus 99 H~Cp~C~~ 106 (134)
..||+|+.
T Consensus 6 ~~CP~C~~ 13 (50)
T 1pft_A 6 KVCPACES 13 (50)
T ss_dssp CSCTTTSC
T ss_pred EeCcCCCC
Confidence 34555554
No 10
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=35.17 E-value=20 Score=24.67 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.0
Q ss_pred cCCceeECCCcCceeEE
Q 032751 94 LWHKYHYCPSCNEKVAN 110 (134)
Q Consensus 94 ckDv~H~Cp~C~~~lG~ 110 (134)
-+..+..|+||+..|+.
T Consensus 66 ~~s~~~~C~nC~R~vaa 82 (99)
T 3mhs_C 66 ESSQYIHCENCGRDVSA 82 (99)
T ss_dssp TTSCEEECTTTCCEEEG
T ss_pred cCCCeEECCCCCCCchh
Confidence 46678999999999864
No 11
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=34.69 E-value=14 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=20.3
Q ss_pred ECCCcCceeEEEecCCceEEeCCCC
Q 032751 100 YCPSCNEKVANFEKRDICAVMDPPH 124 (134)
Q Consensus 100 ~Cp~C~~~lG~~~r~~~~~~~~p~~ 124 (134)
.||||+..-=+.+.++-.+++||..
T Consensus 37 ~CPnCgs~~~T~~w~G~ViI~dPe~ 61 (81)
T 3p8b_A 37 RCPVCGSRDLSEEWFDLVIIVDVEN 61 (81)
T ss_dssp SCTTTCCCCEESCEEEEEEESCTTT
T ss_pred CCCCCCCCccCCccceEEEEeCChH
Confidence 5999988665677889999999873
No 12
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=34.21 E-value=15 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=18.7
Q ss_pred CCcCeeEECCCCCCeEEeEEEEc
Q 032751 45 RDTPAPFSCVYCGNSGVTQVRSK 67 (134)
Q Consensus 45 ~~~P~~~~CP~C~~~v~T~V~~~ 67 (134)
.+.-...+||+|++..+++|...
T Consensus 25 t~~~~k~FCp~CGn~TL~Rvsvs 47 (79)
T 2con_A 25 TSDMNRVFCGHCGNKTLKKVSVT 47 (79)
T ss_dssp ESCSSCCSCSSSCCSCCEEEECB
T ss_pred CCCcccccccccCcccceEEEEE
Confidence 45667789999999988888764
No 13
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.45 E-value=33 Score=22.56 Aligned_cols=14 Identities=36% Similarity=0.866 Sum_probs=10.0
Q ss_pred CCceeECCCcCcee
Q 032751 95 WHKYHYCPSCNEKV 108 (134)
Q Consensus 95 kDv~H~Cp~C~~~l 108 (134)
++..|.||+|+..+
T Consensus 24 q~~~y~Cp~CG~~~ 37 (83)
T 1vq8_Z 24 MNEDHACPNCGEDR 37 (83)
T ss_dssp HHSCEECSSSCCEE
T ss_pred ccccCcCCCCCCcc
Confidence 45677888888754
No 14
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=29.95 E-value=23 Score=25.25 Aligned_cols=14 Identities=36% Similarity=0.880 Sum_probs=8.1
Q ss_pred ECCCcCceeEEEec
Q 032751 100 YCPSCNEKVANFEK 113 (134)
Q Consensus 100 ~Cp~C~~~lG~~~r 113 (134)
.||.||..+-+-.|
T Consensus 150 ~Cp~CG~~~~~~~~ 163 (165)
T 2lcq_A 150 VCPDCGSKVKLIPR 163 (165)
T ss_dssp BCTTTCCBEEECCC
T ss_pred cCCCCCCcceeCCc
Confidence 57777766544333
No 15
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=29.20 E-value=8.7 Score=24.76 Aligned_cols=38 Identities=24% Similarity=0.592 Sum_probs=25.9
Q ss_pred ceeECCCcCceeEE-----Eec--CCceEEeCCCCccccccccCC
Q 032751 97 KYHYCPSCNEKVAN-----FEK--RDICAVMDPPHWTQLSFALPA 134 (134)
Q Consensus 97 v~H~Cp~C~~~lG~-----~~r--~~~~~~~~p~~~~~~~~~~~~ 134 (134)
....||.|++.+-- |+. ++-|.-+|=-+|-.|++++|+
T Consensus 8 ~~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~Wa~e~y~Ip~ 52 (68)
T 1lv3_A 8 ITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPS 52 (68)
T ss_dssp CEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSCSSSSSCCCCS
T ss_pred CcCcCCCCCCcccccccCCCCcccCHHHHhhhHHHHhcCCccccC
Confidence 45689999998862 111 244666666788888888763
No 16
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=28.56 E-value=12 Score=30.11 Aligned_cols=16 Identities=19% Similarity=0.580 Sum_probs=11.5
Q ss_pred ccCCcCeeEECCCCCCeEEe
Q 032751 43 IYRDTPAPFSCVYCGNSGVT 62 (134)
Q Consensus 43 ~~~~~P~~~~CP~C~~~v~T 62 (134)
+|++. -|+.|+..+..
T Consensus 248 VYgR~----pC~~CGt~I~~ 263 (287)
T 3w0f_A 248 VYKRP----NCDQCHSKITV 263 (287)
T ss_dssp STTCS----BCTTTCCBCEE
T ss_pred EECCC----CCCCCCCEEEE
Confidence 36665 69999987654
No 17
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=28.55 E-value=34 Score=18.14 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=10.3
Q ss_pred eeEECCCCCCeEE
Q 032751 49 APFSCVYCGNSGV 61 (134)
Q Consensus 49 ~~~~CP~C~~~v~ 61 (134)
-++.||-|++...
T Consensus 5 f~vqcpvcqq~mp 17 (29)
T 3vhs_A 5 FQVQCPVCQQMMP 17 (29)
T ss_dssp CEEECTTTCCEEE
T ss_pred eeeeChHHHHhCc
Confidence 4689999998764
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=27.70 E-value=24 Score=27.17 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.5
Q ss_pred CCceeECCCcCceeEE
Q 032751 95 WHKYHYCPSCNEKVAN 110 (134)
Q Consensus 95 kDv~H~Cp~C~~~lG~ 110 (134)
.|...+||+||..|=.
T Consensus 219 ~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 219 SGDMITCPYCGRILYA 234 (256)
T ss_dssp SSSCEECTTTCCEEEC
T ss_pred CCCEEECCCCCeeEEe
Confidence 5678999999999864
No 19
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.12 E-value=26 Score=21.20 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.3
Q ss_pred ceeECCCcCceeEE
Q 032751 97 KYHYCPSCNEKVAN 110 (134)
Q Consensus 97 v~H~Cp~C~~~lG~ 110 (134)
..|.|+.|+..++.
T Consensus 13 ~k~iCpkC~a~~~~ 26 (51)
T 3j21_g 13 KKYVCLRCGATNPW 26 (51)
T ss_dssp SEEECTTTCCEECT
T ss_pred CCccCCCCCCcCCC
Confidence 57999999998653
No 20
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=25.39 E-value=34 Score=25.74 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=17.1
Q ss_pred cCCcCeeEECCCCCCeEEeE
Q 032751 44 YRDTPAPFSCVYCGNSGVTQ 63 (134)
Q Consensus 44 ~~~~P~~~~CP~C~~~v~T~ 63 (134)
++...+.++||.|+..-..+
T Consensus 128 pg~~~VKlyCP~C~DvY~p~ 147 (182)
T 1qf8_A 128 PGEAMVKLYCPKCMDVYTPK 147 (182)
T ss_dssp TTSCBCEEECTTTCCEECCS
T ss_pred CCCCceEEECCCccceeCCC
Confidence 68899999999999977654
No 21
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=23.84 E-value=63 Score=20.58 Aligned_cols=20 Identities=25% Similarity=0.685 Sum_probs=15.9
Q ss_pred ecccCCcCeeEECCCCCCeE
Q 032751 41 QTIYRDTPAPFSCVYCGNSG 60 (134)
Q Consensus 41 q~~~~~~P~~~~CP~C~~~v 60 (134)
|.+|+.....+.|..|+...
T Consensus 17 q~VFShA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 17 QVIFDHPSTIVKCIICGRTV 36 (66)
T ss_dssp EEEESSCSSCEECSSSCCEE
T ss_pred eEEEecCceEEEcccCCCEE
Confidence 45688888888899998765
No 22
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.86 E-value=68 Score=20.22 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=14.4
Q ss_pred ecccCCcCeeEECCCCCCeE
Q 032751 41 QTIYRDTPAPFSCVYCGNSG 60 (134)
Q Consensus 41 q~~~~~~P~~~~CP~C~~~v 60 (134)
|.+|+.....+.|..|+...
T Consensus 25 q~VFSha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 25 QIVFSHPATKVRCLICGATL 44 (63)
T ss_dssp EEEESSCSSCEECSSSCCEE
T ss_pred eEEEecCCeEEEccCcCCEE
Confidence 34577777778888887654
No 23
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.83 E-value=44 Score=17.71 Aligned_cols=13 Identities=23% Similarity=0.700 Sum_probs=10.3
Q ss_pred ceeECCCcCceeE
Q 032751 97 KYHYCPSCNEKVA 109 (134)
Q Consensus 97 v~H~Cp~C~~~lG 109 (134)
..|.||.|+..+-
T Consensus 2 ~k~~CpvCk~q~P 14 (28)
T 2jvx_A 2 SDFCCPKCQYQAP 14 (28)
T ss_dssp CCEECTTSSCEES
T ss_pred CcccCccccccCc
Confidence 4689999998653
No 24
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.30 E-value=35 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=12.8
Q ss_pred CCcCeeEECCCCCCeEEe
Q 032751 45 RDTPAPFSCVYCGNSGVT 62 (134)
Q Consensus 45 ~~~P~~~~CP~C~~~v~T 62 (134)
+..++.-.|+.|+..+.-
T Consensus 23 ~~~~v~Y~C~~CG~~~e~ 40 (70)
T 1twf_L 23 RTATLKYICAECSSKLSL 40 (70)
T ss_dssp --CCCCEECSSSCCEECC
T ss_pred CCceEEEECCCCCCccee
Confidence 345677899999998653
No 25
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=21.14 E-value=56 Score=21.83 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=13.9
Q ss_pred CceeECCCcCceeEEEec
Q 032751 96 HKYHYCPSCNEKVANFEK 113 (134)
Q Consensus 96 Dv~H~Cp~C~~~lG~~~r 113 (134)
-.+++|++||..|-....
T Consensus 65 ~~r~FC~~CGs~l~~~~~ 82 (118)
T 3fac_A 65 AKHWFCRTCGIYTHHQRR 82 (118)
T ss_dssp SEEEEETTTCCEEEEECS
T ss_pred EeeEECCCCCccccCccC
Confidence 357899999999965543
No 26
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=20.82 E-value=1.1e+02 Score=16.48 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=14.5
Q ss_pred ceeECCCcCceeEEEecCC
Q 032751 97 KYHYCPSCNEKVANFEKRD 115 (134)
Q Consensus 97 v~H~Cp~C~~~lG~~~r~~ 115 (134)
....|+.|++.|......+
T Consensus 5 ~fY~C~~CGnivev~~~g~ 23 (36)
T 1dxg_A 5 DVYKCELCGQVVKVLEEGG 23 (36)
T ss_dssp CEEECTTTCCEEEEEECCS
T ss_pred cEEEcCCCCcEEEEEeCCC
Confidence 4568999999998765543
No 27
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=20.64 E-value=27 Score=27.82 Aligned_cols=18 Identities=33% Similarity=0.949 Sum_probs=10.1
Q ss_pred eECCCcCc-eeEEEecCCc
Q 032751 99 HYCPSCNE-KVANFEKRDI 116 (134)
Q Consensus 99 H~Cp~C~~-~lG~~~r~~~ 116 (134)
-||||||. .|-.+..-.+
T Consensus 35 ~yCPnCG~~~l~~f~nN~P 53 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRP 53 (257)
T ss_dssp CCCTTTCCSSCEEC----C
T ss_pred CcCCCCCChhhhhccCCCc
Confidence 48999988 4766655443
No 28
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=20.38 E-value=50 Score=25.53 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=17.6
Q ss_pred cCCcCeeEECCCCCCeEEeE
Q 032751 44 YRDTPAPFSCVYCGNSGVTQ 63 (134)
Q Consensus 44 ~~~~P~~~~CP~C~~~v~T~ 63 (134)
++...+.++||.|+..-..+
T Consensus 128 pg~~~VKlyCP~C~DvY~P~ 147 (215)
T 4dgl_A 128 PGEAMVKLYCPKCMDVYTPK 147 (215)
T ss_dssp TTSCBEEEECTTTCCEECCS
T ss_pred CCccceeEeCCCcccccCCC
Confidence 68899999999999988765
No 29
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=20.36 E-value=18 Score=28.36 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=22.4
Q ss_pred ccccCCceeECCCcCceeEE----------EecCCceEEeCCC
Q 032751 91 MDCLWHKYHYCPSCNEKVAN----------FEKRDICAVMDPP 123 (134)
Q Consensus 91 ~d~ckDv~H~Cp~C~~~lG~----------~~r~~~~~~~~p~ 123 (134)
+...++..++|+.|+++--. ++++-.|+|.+|.
T Consensus 47 l~~~~~~i~~C~~C~nlte~~~C~IC~d~~Rd~~~iCVVE~~~ 89 (228)
T 1vdd_A 47 LLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPG 89 (228)
T ss_dssp HHHHHHHCEECSSSCCEESSSSCHHHHCSSSCTTEEEEESSHH
T ss_pred HHHHHhcCeEcCCCCCCcCCCcCCCCCCCCcCCCeEEEECCHH
Confidence 35567889999999988321 2333478887764
No 30
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=20.30 E-value=50 Score=20.56 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=10.8
Q ss_pred CceeECCCcCcee
Q 032751 96 HKYHYCPSCNEKV 108 (134)
Q Consensus 96 Dv~H~Cp~C~~~l 108 (134)
...|+|-+||..+
T Consensus 25 ~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 25 NRKHHCRSCGGVF 37 (73)
T ss_dssp BCCEECTTTCCEE
T ss_pred cccccCCCCCEEE
Confidence 5689999999876
No 31
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=20.29 E-value=51 Score=21.10 Aligned_cols=14 Identities=21% Similarity=0.572 Sum_probs=11.4
Q ss_pred CceeECCCcCceeE
Q 032751 96 HKYHYCPSCNEKVA 109 (134)
Q Consensus 96 Dv~H~Cp~C~~~lG 109 (134)
...|+|-+||..+=
T Consensus 35 ~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 35 VRRHHCRNCGYVLC 48 (84)
T ss_dssp SCCEECTTTCCEEC
T ss_pred hhcccccCCCcEEC
Confidence 56899999998763
No 32
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.08 E-value=55 Score=20.88 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=11.0
Q ss_pred CceeECCCcCcee
Q 032751 96 HKYHYCPSCNEKV 108 (134)
Q Consensus 96 Dv~H~Cp~C~~~l 108 (134)
...|+|-+||.++
T Consensus 28 ~RrHHCR~CG~vf 40 (84)
T 1x4u_A 28 KKRRSCSNCGNSF 40 (84)
T ss_dssp SCCEECSSSCCEE
T ss_pred hhhhhhcCCCcEE
Confidence 5679999999876
Done!