Query 032751
Match_columns 134
No_of_seqs 126 out of 472
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 08:30:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032751.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032751hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x63a2 g.39.1.3 (A:45-76) Fou 63.8 0.78 5.7E-05 23.9 0.2 11 100-110 1-11 (32)
2 d2ct1a1 g.37.1.1 (A:44-71) Tra 63.2 1.2 8.6E-05 22.6 0.9 14 98-111 2-15 (28)
3 d1lv3a_ g.39.1.9 (A:) Hypothet 51.2 4.8 0.00035 24.1 2.4 15 47-61 3-17 (65)
4 d1wiia_ g.41.3.4 (A:) Hypothet 38.2 5.1 0.00037 25.3 1.1 24 46-69 19-44 (85)
5 d2cona1 g.41.15.1 (A:8-73) RNA 36.1 6.3 0.00046 23.6 1.2 22 46-67 19-40 (66)
6 d1ryqa_ g.41.9.3 (A:) putative 35.7 4.9 0.00036 24.2 0.6 24 100-123 23-46 (67)
7 d1pvma3 g.41.13.1 (A:143-178) 34.8 15 0.0011 19.1 2.4 22 98-119 1-24 (36)
8 d1tdza3 g.39.1.8 (A:225-271) D 28.0 10 0.00074 20.9 1.1 19 44-64 14-32 (47)
9 d1wfka_ g.50.1.1 (A:) Zinc fin 27.7 16 0.0012 22.5 2.1 16 94-109 21-36 (88)
10 d1k3xa3 g.39.1.8 (A:223-262) E 27.3 11 0.00078 20.2 1.1 15 51-65 13-27 (40)
11 d1r2za3 g.39.1.8 (A:229-274) D 26.7 11 0.0008 20.6 1.1 20 44-65 14-33 (46)
12 d1qf8a_ g.41.4.1 (A:) Casein k 26.1 15 0.0011 25.6 2.0 20 44-63 122-141 (173)
13 d2ctda2 g.37.1.1 (A:61-90) Zin 25.7 6.6 0.00048 19.9 -0.1 12 51-62 3-14 (30)
14 d1ibia1 g.39.1.3 (A:117-144) C 25.5 15 0.0011 18.4 1.3 10 52-61 3-12 (28)
15 d1qxfa_ g.41.8.4 (A:) Ribosoma 24.2 30 0.0022 20.0 2.8 21 41-61 17-37 (58)
16 d2cu8a1 g.39.1.3 (A:8-37) Cyst 24.1 11 0.00083 19.2 0.7 10 52-61 4-13 (30)
17 d1yuza2 g.41.5.1 (A:167-202) N 23.3 21 0.0015 18.7 1.8 13 96-108 3-15 (36)
18 d1joca1 g.50.1.1 (A:1348-1411) 23.3 20 0.0015 20.5 1.9 14 96-109 22-35 (64)
19 d1vfya_ g.50.1.1 (A:) vps27p p 23.1 19 0.0014 20.8 1.8 14 96-109 19-32 (67)
20 d1nnqa2 g.41.5.1 (A:135-171) R 22.8 21 0.0015 18.8 1.7 14 96-109 3-16 (37)
21 d1k82a3 g.39.1.8 (A:225-268) D 22.5 15 0.0011 19.9 1.1 19 44-64 12-30 (44)
22 d1dvpa2 g.50.1.1 (A:149-220) H 22.1 22 0.0016 20.9 1.9 14 96-109 27-40 (72)
23 d1vqo31 g.41.8.3 (3:1-92) Ribo 21.6 27 0.002 22.0 2.4 19 49-67 7-25 (92)
24 d1y02a2 g.50.1.1 (A:20-70) Rif 20.1 24 0.0017 19.5 1.6 14 96-109 14-27 (51)
No 1
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.75 E-value=0.78 Score=23.90 Aligned_cols=11 Identities=18% Similarity=0.827 Sum_probs=9.6
Q ss_pred ECCCcCceeEE
Q 032751 100 YCPSCNEKVAN 110 (134)
Q Consensus 100 ~Cp~C~~~lG~ 110 (134)
.|+||++.||.
T Consensus 1 tcs~ckq~igs 11 (32)
T d1x63a2 1 TCSNCKQVIGT 11 (32)
T ss_dssp CCSSSCCCCTT
T ss_pred Ccchhhhhccc
Confidence 39999999985
No 2
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.23 E-value=1.2 Score=22.59 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=12.1
Q ss_pred eeECCCcCceeEEE
Q 032751 98 YHYCPSCNEKVANF 111 (134)
Q Consensus 98 ~H~Cp~C~~~lG~~ 111 (134)
.|.||.|...|++.
T Consensus 2 k~qcphc~tiiark 15 (28)
T d2ct1a1 2 KFHCPHCDTVIARK 15 (28)
T ss_dssp SEECSSSSCEESSH
T ss_pred CccCCcchhheeeh
Confidence 68999999999864
No 3
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=51.16 E-value=4.8 Score=24.12 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=12.2
Q ss_pred cCeeEECCCCCCeEE
Q 032751 47 TPAPFSCVYCGNSGV 61 (134)
Q Consensus 47 ~P~~~~CP~C~~~v~ 61 (134)
.+..+.||.|++.+.
T Consensus 3 ~~~~v~CP~C~k~~~ 17 (65)
T d1lv3a_ 3 ETITVNCPTCGKTVV 17 (65)
T ss_dssp CCCEEECTTTCCEEE
T ss_pred CCceeeCCCCCCccc
Confidence 466789999999864
No 4
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.23 E-value=5.1 Score=25.29 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=16.6
Q ss_pred CcCeeEECCCCCC--eEEeEEEEccC
Q 032751 46 DTPAPFSCVYCGN--SGVTQVRSKPS 69 (134)
Q Consensus 46 ~~P~~~~CP~C~~--~v~T~V~~~~g 69 (134)
.-+..+.||+|++ .|.-++.++.|
T Consensus 19 kL~t~F~CPfCnh~~sV~vk~dkk~~ 44 (85)
T d1wiia_ 19 TLETQFTCPFCNHEKSCDVKMDRARN 44 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEEEETTTT
T ss_pred CCCceEcCCCCCCCCeEEEEEEecCC
Confidence 4566789999995 56666666655
No 5
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.13 E-value=6.3 Score=23.60 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.3
Q ss_pred CcCeeEECCCCCCeEEeEEEEc
Q 032751 46 DTPAPFSCVYCGNSGVTQVRSK 67 (134)
Q Consensus 46 ~~P~~~~CP~C~~~v~T~V~~~ 67 (134)
++-...+||.||+..+.+|...
T Consensus 19 ~~~~k~FCpkCGn~TL~rvsvs 40 (66)
T d2cona1 19 SDMNRVFCGHCGNKTLKKVSVT 40 (66)
T ss_dssp SCSSCCSCSSSCCSCCEEEECB
T ss_pred CCcccccCcccCCCceeEEEEE
Confidence 4556789999999988888754
No 6
>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
Probab=35.70 E-value=4.9 Score=24.23 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.3
Q ss_pred ECCCcCceeEEEecCCceEEeCCC
Q 032751 100 YCPSCNEKVANFEKRDICAVMDPP 123 (134)
Q Consensus 100 ~Cp~C~~~lG~~~r~~~~~~~~p~ 123 (134)
.||||+..==+.+.++..++++|.
T Consensus 23 ~CpnC~s~~~S~~~~G~v~i~dP~ 46 (67)
T d1ryqa_ 23 RCPVCGSRDLSEEWFDLVIIVDVE 46 (67)
T ss_dssp SCTTTCCCCEESCEEEEEEESCGG
T ss_pred CCCCCcCCcCCCCcccEEEEECch
Confidence 399998755567888889999885
No 7
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=34.80 E-value=15 Score=19.14 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=15.6
Q ss_pred eeECCCcCc--eeEEEecCCceEE
Q 032751 98 YHYCPSCNE--KVANFEKRDICAV 119 (134)
Q Consensus 98 ~H~Cp~C~~--~lG~~~r~~~~~~ 119 (134)
.|.||.|+- ++-.|+.+++.-|
T Consensus 1 ~hlcpkcgvgvl~pvy~~kgeikv 24 (36)
T d1pvma3 1 QHLCPKCGVGVLEPVYNEKGEIKV 24 (36)
T ss_dssp CCBCTTTSSSBEEEEECTTSCEEE
T ss_pred CccCCccCceEEEEeecCCCcEEE
Confidence 489999974 4456887776654
No 8
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=27.98 E-value=10 Score=20.90 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=11.7
Q ss_pred cCCcCeeEECCCCCCeEEeEE
Q 032751 44 YRDTPAPFSCVYCGNSGVTQV 64 (134)
Q Consensus 44 ~~~~P~~~~CP~C~~~v~T~V 64 (134)
|+++-. .|+.|+..+...+
T Consensus 14 YgR~g~--~C~~C~~~I~~~~ 32 (47)
T d1tdza3 14 YGKTGE--KCSRCGAEIQKIK 32 (47)
T ss_dssp TTCTTS--BCTTTCCBCEEEE
T ss_pred eCCCCC--CcCCCCcEEEEEE
Confidence 454433 6899987655444
No 9
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.68 E-value=16 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=12.4
Q ss_pred cCCceeECCCcCceeE
Q 032751 94 LWHKYHYCPSCNEKVA 109 (134)
Q Consensus 94 ckDv~H~Cp~C~~~lG 109 (134)
.-+..|+|.+||..+=
T Consensus 21 ~~~rrhhCr~CG~vfC 36 (88)
T d1wfka_ 21 LFKKEYGCKNCGRAFC 36 (88)
T ss_dssp SSSCEEECSSSCCEEE
T ss_pred cccccccccccChhhC
Confidence 3456899999998764
No 10
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=27.33 E-value=11 Score=20.21 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=10.5
Q ss_pred EECCCCCCeEEeEEE
Q 032751 51 FSCVYCGNSGVTQVR 65 (134)
Q Consensus 51 ~~CP~C~~~v~T~V~ 65 (134)
..|+.|+..|...+.
T Consensus 13 ~pC~~C~~~I~~~~~ 27 (40)
T d1k3xa3 13 EPCERCGSIIEKTTL 27 (40)
T ss_dssp SBCTTTCCBCEEEEE
T ss_pred CccCcCCCEEEEEEE
Confidence 368999877766544
No 11
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.68 E-value=11 Score=20.62 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=12.2
Q ss_pred cCCcCeeEECCCCCCeEEeEEE
Q 032751 44 YRDTPAPFSCVYCGNSGVTQVR 65 (134)
Q Consensus 44 ~~~~P~~~~CP~C~~~v~T~V~ 65 (134)
|++.-. .|+.|+..|...+.
T Consensus 14 YgR~g~--~C~~C~~~I~~~~~ 33 (46)
T d1r2za3 14 YGRQGN--PCKRCGTPIEKTVV 33 (46)
T ss_dssp TTCTTS--BCTTTCCBCEEEEE
T ss_pred eCCCCC--ccCCCCCeEEEEEE
Confidence 444333 68999887655443
No 12
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.08 E-value=15 Score=25.61 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=17.1
Q ss_pred cCCcCeeEECCCCCCeEEeE
Q 032751 44 YRDTPAPFSCVYCGNSGVTQ 63 (134)
Q Consensus 44 ~~~~P~~~~CP~C~~~v~T~ 63 (134)
++...+.++||.|+..-..+
T Consensus 122 ~g~~~vKlyCP~C~dvY~p~ 141 (173)
T d1qf8a_ 122 PGEAMVKLYCPKCMDVYTPK 141 (173)
T ss_dssp TTSCBCEEECTTTCCEECCS
T ss_pred CCcCcceEECCChhhccCCC
Confidence 68899999999999987643
No 13
>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.69 E-value=6.6 Score=19.92 Aligned_cols=12 Identities=33% Similarity=0.833 Sum_probs=9.6
Q ss_pred EECCCCCCeEEe
Q 032751 51 FSCVYCGNSGVT 62 (134)
Q Consensus 51 ~~CP~C~~~v~T 62 (134)
+.|++|+++..+
T Consensus 3 ftc~hcgkqlks 14 (30)
T d2ctda2 3 FTCHHCGKQLRS 14 (30)
T ss_dssp CCCSSSCCCCSS
T ss_pred eechhHHHHHhh
Confidence 579999998654
No 14
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=25.54 E-value=15 Score=18.42 Aligned_cols=10 Identities=40% Similarity=0.896 Sum_probs=8.2
Q ss_pred ECCCCCCeEE
Q 032751 52 SCVYCGNSGV 61 (134)
Q Consensus 52 ~CP~C~~~v~ 61 (134)
.||.|++.|-
T Consensus 3 ~CpRC~~~Vy 12 (28)
T d1ibia1 3 KCSRCGDSVY 12 (28)
T ss_dssp ECTTTSSEES
T ss_pred cCcccchhHH
Confidence 6999998764
No 15
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=24.19 E-value=30 Score=20.03 Aligned_cols=21 Identities=24% Similarity=0.654 Sum_probs=15.9
Q ss_pred ecccCCcCeeEECCCCCCeEE
Q 032751 41 QTIYRDTPAPFSCVYCGNSGV 61 (134)
Q Consensus 41 q~~~~~~P~~~~CP~C~~~v~ 61 (134)
|.+|+.....+.|..|+...-
T Consensus 17 ~ivFsha~t~V~C~~Cg~~L~ 37 (58)
T d1qxfa_ 17 QVIFDHPSTIVKCIICGRTVA 37 (58)
T ss_dssp EEEESSCSSCEECSSSCCEEE
T ss_pred EEEEecCceEEEccccCCEEe
Confidence 445888888888888887643
No 16
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.09 E-value=11 Score=19.22 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=8.0
Q ss_pred ECCCCCCeEE
Q 032751 52 SCVYCGNSGV 61 (134)
Q Consensus 52 ~CP~C~~~v~ 61 (134)
.||.|++.|-
T Consensus 4 ~CprC~K~VY 13 (30)
T d2cu8a1 4 KCPKCDKTVY 13 (30)
T ss_dssp BCTTTCCBCC
T ss_pred cCCCCCCcee
Confidence 6999998763
No 17
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=23.34 E-value=21 Score=18.72 Aligned_cols=13 Identities=38% Similarity=0.950 Sum_probs=10.7
Q ss_pred CceeECCCcCcee
Q 032751 96 HKYHYCPSCNEKV 108 (134)
Q Consensus 96 Dv~H~Cp~C~~~l 108 (134)
+..+.|++||...
T Consensus 3 ~~~~vC~vCGyi~ 15 (36)
T d1yuza2 3 DKFHLCPICGYIH 15 (36)
T ss_dssp CCEEECSSSCCEE
T ss_pred CCEEECCCCCCEe
Confidence 5688999999875
No 18
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.28 E-value=20 Score=20.48 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=11.4
Q ss_pred CceeECCCcCceeE
Q 032751 96 HKYHYCPSCNEKVA 109 (134)
Q Consensus 96 Dv~H~Cp~C~~~lG 109 (134)
...|+|.+||..+=
T Consensus 22 ~rrHHCR~CG~v~C 35 (64)
T d1joca1 22 VRRHHCRQCGNIFC 35 (64)
T ss_dssp SCCEECTTTCCEEC
T ss_pred ccccchhhhCCeec
Confidence 45799999998874
No 19
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.08 E-value=19 Score=20.79 Aligned_cols=14 Identities=29% Similarity=0.676 Sum_probs=11.2
Q ss_pred CceeECCCcCceeE
Q 032751 96 HKYHYCPSCNEKVA 109 (134)
Q Consensus 96 Dv~H~Cp~C~~~lG 109 (134)
...|+|.+||..+=
T Consensus 19 ~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 19 NRKHHCRSCGGVFC 32 (67)
T ss_dssp BCCEECTTTCCEEC
T ss_pred ccccccccCCCEec
Confidence 56799999998774
No 20
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.82 E-value=21 Score=18.79 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.0
Q ss_pred CceeECCCcCceeE
Q 032751 96 HKYHYCPSCNEKVA 109 (134)
Q Consensus 96 Dv~H~Cp~C~~~lG 109 (134)
...+.|++||...-
T Consensus 3 ~~~~~C~vCG~i~~ 16 (37)
T d1nnqa2 3 KKVYICPICGYTAV 16 (37)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CcEEECCCCCCEec
Confidence 46789999998753
No 21
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=22.55 E-value=15 Score=19.92 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=12.7
Q ss_pred cCCcCeeEECCCCCCeEEeEE
Q 032751 44 YRDTPAPFSCVYCGNSGVTQV 64 (134)
Q Consensus 44 ~~~~P~~~~CP~C~~~v~T~V 64 (134)
|+++-. .|+.|+..|...+
T Consensus 12 YgR~g~--~C~~C~~~I~~~~ 30 (44)
T d1k82a3 12 YGRKGE--PCRVCGTPIVATK 30 (44)
T ss_dssp TTCTTS--BCTTTCCBCEEEE
T ss_pred eCCCCC--CcCCCCCEEEEEE
Confidence 555443 7999998766544
No 22
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.11 E-value=22 Score=20.90 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=10.8
Q ss_pred CceeECCCcCceeE
Q 032751 96 HKYHYCPSCNEKVA 109 (134)
Q Consensus 96 Dv~H~Cp~C~~~lG 109 (134)
...|+|.+||..+=
T Consensus 27 ~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 27 NRKHHCRNCGQVFC 40 (72)
T ss_dssp SCCEECTTTCCEEC
T ss_pred cccccccccCCeeC
Confidence 46789999988764
No 23
>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=21.56 E-value=27 Score=21.95 Aligned_cols=19 Identities=16% Similarity=0.238 Sum_probs=15.4
Q ss_pred eeEECCCCCCeEEeEEEEc
Q 032751 49 APFSCVYCGNSGVTQVRSK 67 (134)
Q Consensus 49 ~~~~CP~C~~~v~T~V~~~ 67 (134)
...+||+|++..+-.|+..
T Consensus 7 ~~tyCp~CkkHt~HkV~~~ 25 (92)
T d1vqo31 7 FNTYCPHCNEHQEHEVEKV 25 (92)
T ss_dssp EEEEETTTTEEEEEEEEEC
T ss_pred eeccCcccCCCccEEEEEe
Confidence 5679999999988777763
No 24
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.10 E-value=24 Score=19.52 Aligned_cols=14 Identities=14% Similarity=0.565 Sum_probs=11.1
Q ss_pred CceeECCCcCceeE
Q 032751 96 HKYHYCPSCNEKVA 109 (134)
Q Consensus 96 Dv~H~Cp~C~~~lG 109 (134)
+..|+|.+||..+=
T Consensus 14 ~rkhhCr~CG~~fC 27 (51)
T d1y02a2 14 ARKQTCLDCKKNFC 27 (51)
T ss_dssp GGCEECTTTCCEEC
T ss_pred ccCcccccCCcccC
Confidence 46799999998763
Done!