BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032754
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 145 bits (367), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
S GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F
Sbjct: 1 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 61 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED
Sbjct: 61 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 102
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 68/102 (66%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Query: 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
++ GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F
Sbjct: 1 LNMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 60
Query: 60 PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED
Sbjct: 61 KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED 102
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 145 bits (366), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
S GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F
Sbjct: 2 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 61 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED
Sbjct: 62 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 103
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 145 bits (366), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 76/102 (74%), Gaps = 1/102 (0%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
S GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F
Sbjct: 5 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 61 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED
Sbjct: 65 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 106
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 145 bits (365), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 101
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 145 bits (365), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/99 (68%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L +
Sbjct: 6 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED
Sbjct: 66 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 104
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 145 bits (365), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 104
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDK 104
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 67/100 (67%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
+ F +DYPS PPKCKF FHP VYPSGTVCLSIL ED
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDK 104
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 142 bits (357), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L +
Sbjct: 6 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 65
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
F +DYPS PPKCKF FHPNV PSGTVCLSIL ED
Sbjct: 66 LFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEED 103
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 141 bits (356), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
+ F +DYPS PPKCKF FHPNVYPSGTV LSIL ED
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEED 100
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 141 bits (356), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/99 (67%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
GIA RL +ERKAWRK+HP GFVA P + DG++NLM WEC IPGK GT WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
+ F +DYPS PPKCKF FHPNVYPSGTV LSIL ED
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEED 100
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 139 bits (349), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED 68
RL EERK WRK+HP GF AKP K DGS++L WE IPGK GT+W GG +P+T+ + +
Sbjct: 10 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 69
Query: 69 YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
YPSKPPK KFP GF+HPNVYPSGT+CLSILNED
Sbjct: 70 YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQ 103
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 74/94 (78%), Gaps = 1/94 (1%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED 68
RL EERK WRK+HP GF AKP K DGS++L WE IPGK GT+W GG +P+T+ + +
Sbjct: 8 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 69 YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
YPSKPPK KFP GF+HPNVYPSGT+CLSILNED
Sbjct: 68 YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQ 101
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 129 bits (324), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
+ + RL EERK WR++HP GF AKP ++ DG ++LM W+ IPGK T WEGG + LT
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
+ F E+YP++PPKC+F FHPNVYPSGTVCLSILNE+
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEE 107
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
AR RL + K +++ P G P+ N+M+W +I G T W+GG F L+L FS
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
EDYP+KPP +F FHPN+Y G++CL IL
Sbjct: 61 EDYPNKPPTVRFVSRMFHPNIYADGSICLDIL 92
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
A+ RL +E + K+ P G VA P++++ N+ IW+C+I G T + G F L F
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEFP 61
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
+DYP PPK F HPN+YP+G VC+SIL+
Sbjct: 62 KDYPLSPPKLTFTPSILHPNIYPNGEVCISILH 94
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
+R RL + K +++ P G P T+D N++ WE II G T +E G F L+L F+
Sbjct: 5 SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
E+YP+KPP KF FHPNVY G++CL IL
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 93
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br
Domain Of Gp78 At 1.8-A Resolution
Length = 164
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G A RL E K N P G VA P ++ N WE +I G T +E G FP L
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 57
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
F DYP PPK +F FHPN+YP G VC+SIL+
Sbjct: 58 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 93
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G A RL E K N P G VA P ++ N WE +I G T +E G FP L
Sbjct: 7 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 63
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
F DYP PPK +F FHPN+YP G VC+SIL+
Sbjct: 64 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 99
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
Length = 168
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G A RL E K N P G VA P ++ N WE +I G T +E G FP L
Sbjct: 5 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 61
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
F DYP PPK +F FHPN+YP G VC+SIL+
Sbjct: 62 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 97
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 79.7 bits (195), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G A RL E K N P G VA P ++ N WE +I G T +E G FP L
Sbjct: 4 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 60
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
F DYP PPK +F FHPN+YP G VC+SIL+
Sbjct: 61 SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILH 96
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
+R RL + K +++ P G P T+D N++ WE II G T +E G F L+L F+
Sbjct: 8 SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
E+YP+KPP KF FHPNVY G++CL IL
Sbjct: 64 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ 96
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
AR RL + K +++ P G A P N+M+W +I G T +E G F L L F
Sbjct: 5 ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
E+YP+KPP KF FHPNVY +G +CL IL
Sbjct: 61 EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ 93
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
AR RL + K +++ P G P N+M W +I G GT +E G F L + FS
Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
E+YP+KPP +F FHPNVY G++CL IL
Sbjct: 61 EEYPNKPPTVRFLSKMFHPNVYADGSICLDIL 92
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E + +++ P A P D L W+ I G + + ++GG F LT+
Sbjct: 4 GSMALKRIQKELQDLQRDPPAQCSAGPVGDD----LFHWQATIMGPSDSPYQGGVFFLTI 59
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 60 HFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDIL 94
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E +++ P A P D L W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTV 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 57 HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 91
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 4 GGIARGRLTEERK--AWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
G + RG L R+ KN GF A + +L WE +I G T +EGG F
Sbjct: 13 GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKA 69
Query: 62 TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
L F +DYP +PPK KF +HPNV +G VC+SIL+E
Sbjct: 70 HLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHE 108
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E +++ P A P D L W+ I G + ++GG F LT+
Sbjct: 17 GSMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTV 72
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 73 HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 107
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 42 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
WE ++ G T +EGG+F L F DYP KPPK KF +HPN+ G VC+SIL++
Sbjct: 36 WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHD 94
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b,
Wild-Type
Length = 149
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 4 GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 59
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 60 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 94
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 17 GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 73 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 107
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G +A R+ +E + ++ P A P D L W+ I G + ++GG F LT
Sbjct: 1 GSHMALKRIQKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPESPYQGGVFFLT 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN 99
++F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 93
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
GI R R+T+E + P G +A P + N + +I G GT +EGG + L L+
Sbjct: 1 GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
E YP +PPK +F +HPN+ G +CL IL +
Sbjct: 56 LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD 91
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
G A R+ +E ++ P A P D + W+ I G + ++GG F LT++
Sbjct: 2 GSALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIH 57
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 58 FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
+A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 9 NSMALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 65 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 99
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
GI R R+T+E + P G +A P + N + +I G GT +EGG + L L+
Sbjct: 1 GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
E YP +PPK +F +HPN+ G +CL IL +
Sbjct: 56 LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD 91
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 153
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E +++ P A P D L W+ I G + ++GG F LT++F
Sbjct: 7 MALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTVHF 62
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
DYP KPPK F +HPN+ +G++CL IL
Sbjct: 63 PTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 95
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ E K+ P A P D L W+ I G + + GG F L+++F
Sbjct: 1 MALKRINRELADLGKDPPSSSSAGPVGDD----LFHWQATIMGPADSPYAGGVFFLSIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
DYP KPPK F +HPN+ +G++CL IL +
Sbjct: 57 PTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRD 91
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
+A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 9 NSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 65 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 99
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 9 MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 64
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
DYP KPPK F +HPN+ +G++CL IL
Sbjct: 65 PTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 97
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL L
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDAL 91
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATAMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++CL IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 91
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 57 HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 91
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
DYP KPPK F +HPN+ +G++CL IL
Sbjct: 57 TDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 88
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating
Enzyme Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 MALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
DYP KPPK F +HPN+ +G++CL IL
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 89
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
A R+ +E K+ P A P D + W+ I G + + GG F L ++F
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDD----MFHWQATIMGPEDSPYSGGVFFLNIHFP 77
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
DYP KPPK F +HPN+ G +CL IL +
Sbjct: 78 SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKD 111
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT
Sbjct: 1 AGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLT 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
++F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 92
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G +A R+ +E +++ P A P D L W+ I G + ++GG F LT
Sbjct: 4 SGSMALKRIQKELSDLQRDPPAHCRAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLT 59
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
++F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 60 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDIL 95
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
+L WE I G T +EGGYF L F DYP PP +F +HPN+Y +G VC+SI
Sbjct: 36 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 98 LN 99
L+
Sbjct: 96 LH 97
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
+L WE I G T +EGGYF L F DYP PP +F +HPN+Y +G VC+SI
Sbjct: 33 DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 98 LN 99
L+
Sbjct: 93 LH 94
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL +E + + G A P DG NL W + G T +E + LTL F DY
Sbjct: 13 RLQQELRTLLMSGDPGITAFP---DGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSS 105
P KPP KF +HPNV SG +CL IL E+ +S
Sbjct: 69 PYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTAS 104
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G +A R+ +E ++ P A P D + W+ I G + ++GG F LT+
Sbjct: 17 GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 72
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
+F DYP KPPK F +HPN+ +G++ L IL
Sbjct: 73 HFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDIL 107
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E ++ P A P D L W+ I G + + GG F L+++F DY
Sbjct: 6 RIAKELSDLERDPPTSCSAGPVGDD----LYHWQASIMGPADSPYAGGVFFLSIHFPTDY 61
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
P KPPK F +HPN+ +G +CL IL +
Sbjct: 62 PFKPPKISFTTKIYHPNINANGNICLDILKD 92
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
DYP KPPK F +HPN+ +G++ L IL
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 89
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
DYP KPPK F +HPN+ +G++ L IL
Sbjct: 57 TDYPFKPPKVAFTTRIYHPNINSNGSISLDIL 88
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G + R+ +E + P A P+ N+ W I G G+ +EGG F L +
Sbjct: 1 GSTSAKRIQKELAEITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDI 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
FS DYP KPPK F +H N+ G +CL IL ++
Sbjct: 57 TFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN 94
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 19 RKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF 78
++N+ G AKP ++D +M WE I G + W+G F LT++F+ +Y PP KF
Sbjct: 36 KENNYKGITAKPVSED----MMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKF 91
Query: 79 PQGFFHPNVYP-SGTVCLSILN 99
FHPNV P +G C+ L+
Sbjct: 92 ITIPFHPNVDPHTGQPCIDFLD 113
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
+A R+ +E + +++ P A P D + W I G + ++GG F L
Sbjct: 1 SAAMAMRRIQKELREIQQDPPCNCSAGPVGDD----IFHWTATITGPDDSPYQGGLFFLD 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
++F DYP K P+ F +HPN+ +G +CL IL +
Sbjct: 57 VHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKD 94
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 42 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
W I G GT +EGG+F L + DYP PPK KF +HPN+ +G +CL IL
Sbjct: 77 WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKH 136
Query: 101 D 101
+
Sbjct: 137 E 137
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 2 SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
S G+ R + E ++ + P G A+P+ N + +I G + +EGG F L
Sbjct: 5 SMAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKL 59
Query: 62 TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
L+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 60 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 98
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLS 96
N W I G GT +EGG+F L + DYP PPK KF +HPN+ +G +CL
Sbjct: 51 NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 97 ILNED 101
+L +
Sbjct: 111 VLKNE 115
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G+ R + E ++ + P G A+P+ N + +I G + +EGG F L L
Sbjct: 5 AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 59
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 60 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 96
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 23 PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82
P G P +D L + I G GT + GG F + L +D+P+ PPK F
Sbjct: 30 PDGIKVFPNEED----LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85
Query: 83 FHPNVYPSGTVCLSILNED 101
FHPNV +G +C+++L D
Sbjct: 86 FHPNVGANGEICVNVLKRD 104
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G+ R + E ++ + P G A+P+ N + +I G + +EGG F L
Sbjct: 3 SAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLE 57
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
L+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 58 LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 95
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
G+ R + E ++ + P G A+P+ N + +I G + +EGG F L L
Sbjct: 2 AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 56
Query: 64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
+ E+YP PK +F +HPNV G +CL IL +
Sbjct: 57 FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 93
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSE 67
+ RL +E A + + P G ++ S+ W + G GT +EG F L FS
Sbjct: 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQ--WIVDMEGAPGTLYEGEKFQLLFKFSS 81
Query: 68 DYPSKPPKCKFPQGFF--HPNVYPSGTVCLSILNED-----NVSSSCRFVI 111
YP P+ F HP+VY +G +CLSIL ED +V S C +I
Sbjct: 82 RYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSII 132
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
G+ R + E ++ + P G A+P+ N + +I G + +EGG F L L+
Sbjct: 1 GLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELF 55
Query: 65 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
E+YP PK +F +HPNV G +CL IL +
Sbjct: 56 LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKD 91
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
N+ W I G G+ +EGG F L + F+ +YP KPPK F +H N+ G +CL I
Sbjct: 76 NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 98 LNED 101
L ++
Sbjct: 136 LKDN 139
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E ++ P A P D + W+ I G + ++GG F LT++F
Sbjct: 1 MALKRIHKELNDLARDPPAQCRAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
DYP KPPK F +HP + +G++ L IL
Sbjct: 57 PTDYPFKPPKVAFTTRIYHPAINSNGSISLDIL 89
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E + + G A+P NL ++ I G + +E G F L LY +DY
Sbjct: 9 RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
P + PK +F +HPN+ G +CL +L
Sbjct: 65 PMEAPKVRFLTKIYHPNIDRLGRICLDVL 93
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 4 GGIARG----RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
GG ARG RL +E + G A PE S NL W I G GT +E +
Sbjct: 24 GGAARGPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLRY 79
Query: 60 PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
L+L F YP P KF +HPNV G + L IL E
Sbjct: 80 KLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKE 120
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E + + G A+P NL ++ I G + +E G F L LY +DY
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
P + PK +F +HPN+ G +CL +L
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRICLDVL 91
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWE-CIIPGKTGTDWEGGYFPL 61
G A RL +E + RK F + NL+ W+ I+P ++ G F +
Sbjct: 1 GSMAASRRLMKELEEIRKCGMKNFR---NIQVDEANLLTWQGLIVPD--NPPYDKGAFRI 55
Query: 62 TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN 102
+ F +YP KPPK F +HPN+ G VCL +++ +N
Sbjct: 56 EINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN 96
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 39 LMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTV 93
L I + +I G T + G F +YF +DYPS PP F+PN+Y G V
Sbjct: 109 LDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKV 168
Query: 94 CLSILN 99
CLSILN
Sbjct: 169 CLSILN 174
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E + + G A+P NL ++ I G + +E G F L LY +DY
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
P + PK +F +HPN+ G + L +L
Sbjct: 63 PMEAPKVRFLTKIYHPNIDRLGRISLDVL 91
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 35 GSVNLMIWE-CIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTV 93
NL+ W+ I+P ++ G F + + F +YP KPPK F +HPN+ G V
Sbjct: 28 DEANLLTWQGLIVPD--NPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 85
Query: 94 CLSILNEDN 102
CL +++ +N
Sbjct: 86 CLPVISAEN 94
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
G +A R+ +E + +K P ++ + D N+++W ++ + F L
Sbjct: 1 GSHMASMRVVKELEDLQKKPP-PYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLR 56
Query: 63 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN---VSSSCRFVIYFQIMYG 118
+ F +YP KPP KF +HPNV +G +CL I++ +N + +C+ + ++
Sbjct: 57 ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVN 115
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
R+ +E + + G A+P NL ++ I G + +E G F L LY +DY
Sbjct: 7 RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
P + PK +F +HP + G + L +L
Sbjct: 63 PMEAPKVRFLTKIYHPAIDRLGRISLDVL 91
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating
Enzyme, Ubc1
Length = 215
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSIL 98
G GT +EGG F + + +YP KPPK +F +HPN+ +G +CL IL
Sbjct: 41 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL 92
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL +
Sbjct: 60 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 115
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL +
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 151
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 7/116 (6%)
Query: 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
+A R+ +E + +K P ++ + D N+++W ++ + F L + F
Sbjct: 1 MASMRVVKELEDLQK-KPPPYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLRISF 56
Query: 66 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN---VSSSCRFVIYFQIMYG 118
+YP KPP KF +HPNV +G +CL I++ +N + +C+ + ++
Sbjct: 57 PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVN 112
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL +
Sbjct: 44 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 99
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL +
Sbjct: 45 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 100
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
I G T +EGG + L + E YP PPK +F +HPN+ +G +CL IL +
Sbjct: 47 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKD 102
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILN 99
G GT +EGG F + + +YP KPPK +F +HPN+ +G +CL IL
Sbjct: 40 GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK 92
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 46 IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL 98
I G T +E G F L + E YP +PP+ +F +HPN+ +G +CL +L
Sbjct: 40 ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVL 92
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 25 GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84
+ P++ D S + + + P + ++ G L F+E YP +PPK + FH
Sbjct: 50 NVITSPDSADRSQSPKLEVIVRPDEGYYNY--GSINFNLDFNEVYPIEPPKVVCLKKIFH 107
Query: 85 PNVYPSGTVCLSILNED 101
PN+ G VCL+IL ED
Sbjct: 108 PNIDLKGNVCLNILRED 124
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
G GT +EGG + + + + YP K P F FHPN+ SGTVCL ++N+
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ 112
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 42 WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
++ + G GT +EGG + + + +DYP P F HPNV SG+VCL ++N+
Sbjct: 31 FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNVY-PSGTVCL 95
+L WE II G + T +E F + + YP PPK F Q H NV +G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 96 SIL 98
+IL
Sbjct: 106 NIL 108
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLS 96
N+ IW G T + + L + F +DYP KPP F Q H +VY +G +CLS
Sbjct: 34 NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLS 93
Query: 97 ILNED 101
+L +D
Sbjct: 94 LLGDD 98
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
++ G F + + YP PPK K +HPN+ G VCL+IL ED
Sbjct: 48 YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILRED 95
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
G A R+ +E + KN P N+ IW G T + + + +
Sbjct: 19 GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKII 74
Query: 65 FSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLSILNED 101
F ++YP KPP F Q H +VY +G +CLS+L +D
Sbjct: 75 FPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD 112
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNVY-PSGTVCL 95
+L WE II G + T +E F + + YP PPK F Q H NV +G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96 SIL 98
+IL
Sbjct: 106 NIL 108
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNVY-PSGTVCL 95
+L WE II G + T +E F + + YP PPK F Q H NV +G +CL
Sbjct: 46 DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96 SIL 98
+IL
Sbjct: 106 NIL 108
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
L E + + N G E+ D + L W C I G+ GT +E + LT++ ++YP
Sbjct: 31 LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 89
Query: 71 SKPPKCKF 78
PP KF
Sbjct: 90 DSPPTVKF 97
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
L E + + N G E+ D + L W C I G+ GT +E + LT++ ++YP
Sbjct: 27 LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 85
Query: 71 SKPPKCKF 78
PP KF
Sbjct: 86 DSPPTVKF 93
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 48 GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
G GT +E G + L + DYP K P F HPNV SG+VCL ++N+
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ 99
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYF 113
++GG F + Y PPK K +HPN+ +G +CLS+L E ++
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSID--------- 108
Query: 114 QIMYGSGLAKISSLDDMM 131
G+G A +L D++
Sbjct: 109 ----GTGWAPTRTLKDVV 122
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNVSSSCRFVIYF 113
++GG F + Y PPK K +HPN+ +G +CLS+L E ++
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSID--------- 108
Query: 114 QIMYGSGLAKISSLDDMM 131
G+G A +L D++
Sbjct: 109 ----GTGWAPTRTLKDVV 122
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED 101
++ G F + + YP PPK K +HPN+ G V L+IL ED
Sbjct: 68 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED 115
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 56 GGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 100
G + L++ FS+DYP +PP +F + P V G +C ++N+
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND 112
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 38 NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF--PQGFFHPNVYPSGTVCL 95
N++ W ++ G T +EGGY+ L F ++P KPP P G F N +CL
Sbjct: 42 NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT----RLCL 97
Query: 96 SILNED--------NVSSSCRFVIYFQIMYGSGLAKISSLD 128
SI + +VS+ ++ F + G L I + D
Sbjct: 98 SITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSD 138
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T++E + L + Y
Sbjct: 19 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 78
Query: 70 PSKPPKCKF 78
P PP +F
Sbjct: 79 PEAPPSVRF 87
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T++E + L + Y
Sbjct: 14 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 73
Query: 70 PSKPPKCKF 78
P PP +F
Sbjct: 74 PEAPPSVRF 82
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T++E + L + Y
Sbjct: 9 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 68
Query: 70 PSKPPKCKF 78
P PP +F
Sbjct: 69 PEAPPSVRF 77
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T++E + L + Y
Sbjct: 8 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKY 67
Query: 70 PSKPPKCKF 78
P PP +F
Sbjct: 68 PEAPPSVRF 76
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T +E + L + Y
Sbjct: 29 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 88
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNVSSSCRFVI 111
P PP +F V S V +S+L + S S + V+
Sbjct: 89 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVL 134
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T +E + L + Y
Sbjct: 11 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKY 70
Query: 70 PSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNVSSSCRFVI 111
P PP +F V S V +S+L + S S + V+
Sbjct: 71 PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVL 116
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
RL EE + +K G V+ D + L W +I G T +E + L + Y
Sbjct: 39 RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 98
Query: 70 PSKPPKCKF 78
P PP +F
Sbjct: 99 PEAPPFVRF 107
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 37 VNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 90
+ + W I G ++ E + L++ +YP PPK F P V P+
Sbjct: 37 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 90
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 37 VNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 90
+ + W I G ++ E + L++ +YP PPK F P V P+
Sbjct: 36 ITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPT 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.461
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,885,039
Number of Sequences: 62578
Number of extensions: 212077
Number of successful extensions: 444
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 119
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)