Query 032754
Match_columns 134
No_of_seqs 132 out of 1105
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1E-45 2.3E-50 259.0 12.7 114 5-126 4-118 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 2.5E-44 5.3E-49 247.5 11.6 114 7-129 2-117 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 2.3E-43 5E-48 237.2 10.5 115 1-126 1-116 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 2.5E-41 5.3E-46 238.4 13.5 111 7-126 3-114 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.1E-40 2.5E-45 234.0 13.3 112 8-128 3-115 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 1.3E-40 2.9E-45 229.7 11.9 125 1-129 1-134 (171)
7 KOG0426 Ubiquitin-protein liga 100.0 5.1E-40 1.1E-44 221.3 12.3 125 1-130 1-134 (165)
8 KOG0424 Ubiquitin-protein liga 100.0 1.5E-38 3.2E-43 216.8 13.0 121 1-126 1-123 (158)
9 KOG0418 Ubiquitin-protein liga 100.0 1.3E-37 2.8E-42 220.7 11.0 114 1-126 1-119 (200)
10 KOG0421 Ubiquitin-protein liga 100.0 2.3E-37 5E-42 211.1 9.9 115 5-128 28-143 (175)
11 PF00179 UQ_con: Ubiquitin-con 100.0 4.9E-37 1.1E-41 213.7 10.9 110 10-126 1-111 (140)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 7.2E-36 1.6E-40 208.1 12.4 111 9-127 2-113 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.3E-34 2.7E-39 202.7 12.0 113 9-128 1-114 (145)
14 KOG0427 Ubiquitin conjugating 100.0 9.3E-33 2E-37 186.0 11.3 114 5-128 14-129 (161)
15 KOG0422 Ubiquitin-protein liga 100.0 7.1E-33 1.5E-37 188.1 9.8 111 7-125 3-114 (153)
16 KOG0894 Ubiquitin-protein liga 100.0 1.7E-30 3.7E-35 187.9 11.9 115 1-126 1-118 (244)
17 KOG0420 Ubiquitin-protein liga 100.0 1.1E-30 2.4E-35 183.0 8.4 111 5-126 27-141 (184)
18 KOG0416 Ubiquitin-protein liga 100.0 6.1E-30 1.3E-34 179.0 9.0 112 6-129 3-118 (189)
19 KOG0423 Ubiquitin-protein liga 100.0 1.1E-29 2.3E-34 178.4 4.0 112 6-126 10-122 (223)
20 KOG0428 Non-canonical ubiquiti 99.9 5.9E-25 1.3E-29 162.1 10.1 113 4-127 9-124 (314)
21 KOG0895 Ubiquitin-conjugating 99.8 1.4E-19 3.1E-24 154.5 7.9 113 9-125 854-971 (1101)
22 KOG0895 Ubiquitin-conjugating 99.7 1E-16 2.3E-21 137.2 10.3 118 5-126 281-405 (1101)
23 KOG0429 Ubiquitin-conjugating 99.7 2.4E-16 5.2E-21 115.0 9.8 112 9-130 22-138 (258)
24 KOG0896 Ubiquitin-conjugating 99.5 1.4E-14 3.1E-19 98.3 6.4 117 6-125 5-123 (138)
25 KOG0897 Predicted ubiquitin-co 98.8 5.4E-09 1.2E-13 69.4 3.4 63 59-125 13-77 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 4.3E-08 9.3E-13 67.6 7.1 68 55-127 34-108 (133)
27 PF05743 UEV: UEV domain; Int 98.3 2.4E-06 5.2E-11 58.1 5.6 78 38-125 31-117 (121)
28 PF08694 UFC1: Ubiquitin-fold 98.0 4.2E-06 9E-11 57.9 2.6 76 6-98 24-117 (161)
29 KOG2391 Vacuolar sorting prote 97.7 0.00022 4.9E-09 55.8 8.3 90 31-130 44-142 (365)
30 KOG3357 Uncharacterized conser 97.4 0.00034 7.3E-09 47.9 4.4 83 6-98 27-120 (167)
31 PF05773 RWD: RWD domain; Int 96.2 0.026 5.5E-07 36.8 6.2 67 9-80 4-72 (113)
32 PF14462 Prok-E2_E: Prokaryoti 95.9 0.098 2.1E-06 35.6 8.0 92 25-124 13-120 (122)
33 smart00591 RWD domain in RING 95.3 0.17 3.6E-06 32.6 7.5 25 56-80 40-64 (107)
34 PF14457 Prok-E2_A: Prokaryoti 94.3 0.063 1.4E-06 38.3 3.7 57 61-121 57-122 (162)
35 KOG0309 Conserved WD40 repeat- 86.3 4 8.7E-05 36.0 7.4 67 9-80 423-490 (1081)
36 KOG4018 Uncharacterized conser 84.2 4.5 9.9E-05 30.1 6.0 38 38-76 29-68 (215)
37 PF09765 WD-3: WD-repeat regio 74.2 14 0.0003 28.9 6.3 58 7-77 100-157 (291)
38 PF14460 Prok-E2_D: Prokaryoti 72.3 1.9 4.2E-05 30.9 1.1 20 80-99 90-112 (175)
39 PF06113 BRE: Brain and reprod 69.8 13 0.00028 29.6 5.2 57 53-120 61-121 (333)
40 smart00340 HALZ homeobox assoc 65.1 6.5 0.00014 21.7 1.9 16 7-22 20-35 (44)
41 cd00421 intradiol_dioxygenase 64.0 11 0.00023 26.2 3.4 25 55-79 64-89 (146)
42 cd03457 intradiol_dioxygenase_ 59.9 14 0.0003 27.0 3.5 26 55-80 85-110 (188)
43 PF00845 Gemini_BL1: Geminivir 58.5 22 0.00048 27.2 4.4 46 38-83 101-154 (276)
44 TIGR03737 PRTRC_B PRTRC system 57.1 6.2 0.00013 29.7 1.3 18 81-98 132-152 (228)
45 cd03459 3,4-PCD Protocatechuat 52.2 22 0.00049 25.1 3.5 25 56-80 72-101 (158)
46 KOG3285 Spindle assembly check 51.1 39 0.00085 24.7 4.5 44 4-51 117-160 (203)
47 PF00779 BTK: BTK motif; Inte 46.9 6 0.00013 20.4 -0.1 18 82-99 2-20 (32)
48 KOG4445 Uncharacterized conser 46.5 28 0.00062 27.5 3.4 25 57-81 45-69 (368)
49 cd05845 Ig2_L1-CAM_like Second 41.6 71 0.0015 20.5 4.3 26 54-81 16-41 (95)
50 PF06113 BRE: Brain and reprod 41.0 35 0.00076 27.2 3.3 24 57-80 306-329 (333)
51 TIGR02423 protocat_alph protoc 40.3 40 0.00087 24.7 3.3 24 56-79 96-124 (193)
52 smart00107 BTK Bruton's tyrosi 39.7 14 0.00029 19.6 0.6 17 82-98 7-24 (36)
53 cd03463 3,4-PCD_alpha Protocat 36.4 51 0.0011 23.9 3.4 24 56-79 92-120 (185)
54 PF03366 YEATS: YEATS family; 36.0 1.1E+02 0.0024 19.1 5.0 41 40-82 2-42 (84)
55 KOG0700 Protein phosphatase 2C 35.5 68 0.0015 26.2 4.2 72 10-92 249-331 (390)
56 PRK15486 hpaC 4-hydroxyphenyla 29.4 31 0.00067 24.6 1.2 70 11-101 6-78 (170)
57 PF11886 DUF3406: Domain of un 28.9 1.6E+02 0.0035 22.8 5.0 54 45-100 170-251 (273)
58 PF12065 DUF3545: Protein of u 28.5 40 0.00088 19.9 1.4 12 8-19 36-47 (59)
59 COG4957 Predicted transcriptio 28.5 29 0.00063 24.2 0.9 17 59-75 104-120 (148)
60 COG1853 Conserved protein/doma 28.1 43 0.00092 23.7 1.8 31 71-101 44-77 (176)
61 TIGR02296 HpaC 4-hydroxyphenyl 28.0 28 0.0006 24.3 0.8 31 71-101 36-69 (154)
62 TIGR02439 catechol_proteo cate 28.0 81 0.0018 24.6 3.4 24 56-79 180-221 (285)
63 PF14135 DUF4302: Domain of un 27.1 2.3E+02 0.0049 21.1 5.6 71 5-90 8-102 (235)
64 PF04881 Adeno_GP19K: Adenovir 26.5 1.2E+02 0.0025 21.0 3.5 28 38-65 46-74 (139)
65 KOG3696 Aspartyl beta-hydroxyl 26.2 1.6E+02 0.0035 23.4 4.7 47 43-90 274-326 (334)
66 KOG4274 Positive cofactor 2 (P 26.0 3.2E+02 0.0069 23.9 6.6 52 9-71 622-673 (742)
67 cd03461 1,2-HQD Hydroxyquinol 25.7 95 0.0021 24.1 3.4 24 56-79 172-213 (277)
68 PF09943 DUF2175: Uncharacteri 24.2 84 0.0018 20.7 2.4 21 40-62 1-21 (101)
69 TIGR02438 catachol_actin catec 24.0 1.1E+02 0.0023 23.9 3.4 24 56-79 184-225 (281)
70 cd03460 1,2-CTD Catechol 1,2 d 24.0 1.1E+02 0.0023 23.9 3.4 24 56-79 176-217 (282)
71 TIGR03615 RutF pyrimidine util 23.5 39 0.00084 23.6 0.8 68 13-101 4-74 (156)
72 cd03464 3,4-PCD_beta Protocate 22.7 1.2E+02 0.0026 22.7 3.4 24 56-79 122-152 (220)
73 PF03487 IL13: Interleukin-13; 22.5 1.3E+02 0.0029 16.3 2.6 17 5-21 26-42 (43)
74 KOG1047 Bifunctional leukotrie 22.1 89 0.0019 26.9 2.8 29 52-81 248-279 (613)
75 TIGR02422 protocat_beta protoc 22.0 1.3E+02 0.0027 22.6 3.3 24 56-79 117-147 (220)
76 PF06305 DUF1049: Protein of u 21.7 1E+02 0.0022 17.8 2.4 16 6-21 48-63 (68)
77 PF12627 PolyA_pol_RNAbd: Prob 21.5 77 0.0017 18.1 1.8 19 5-23 21-39 (64)
78 TIGR02465 chlorocat_1_2 chloro 21.5 1.4E+02 0.0029 22.8 3.4 25 55-79 149-191 (246)
79 PF02970 TBCA: Tubulin binding 20.0 1.1E+02 0.0024 19.3 2.4 16 5-20 6-21 (90)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-45 Score=258.96 Aligned_cols=114 Identities=45% Similarity=0.703 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (134)
..|.+||++|+++|++++++++++.+.+++ |+++|+++|.||++|+||||+|++.|.||++||++||+|+|.|+|||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~---~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDD---NLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCC---cceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 349999999999999999999999999875 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
|||+++|+||+++|++ +|+|++ |++||++|+++|.+|
T Consensus 81 PNV~~~G~vCLdIL~~-----~WsP~~~l~sILlsl~slL~~P 118 (153)
T COG5078 81 PNVDPSGNVCLDILKD-----RWSPVYTLETILLSLQSLLLSP 118 (153)
T ss_pred CCcCCCCCChhHHHhC-----CCCccccHHHHHHHHHHHHcCC
Confidence 9999999999999998 899999 999999999999883
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-44 Score=247.53 Aligned_cols=114 Identities=33% Similarity=0.626 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (134)
Q Consensus 7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 86 (134)
|.+||.||+++|++++++||++.+.++ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+|||||
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~d----nl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPN 77 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGD----NLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPN 77 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCC----ceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCC
Confidence 367999999999999999999998776 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC-cch
Q 032754 87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS-LDD 129 (134)
Q Consensus 87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~-~~d 129 (134)
|+..|.||+++|.+ .|+|+. |+.||++|+++|.+| |||
T Consensus 78 I~~~G~IclDILk~-----~WsPAl~i~~VllsI~sLL~~Pnpdd 117 (148)
T KOG0417|consen 78 IDSNGRICLDILKD-----QWSPALTISKVLLSICSLLSDPNPDD 117 (148)
T ss_pred cCccccchHHhhhc-----cCChhhHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999 799999 999999999999874 444
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-43 Score=237.24 Aligned_cols=115 Identities=38% Similarity=0.666 Sum_probs=111.9
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (134)
Q Consensus 1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (134)
|| ..|.+||++|+++|+++++.|++..|.++ |++.|++.|.||++|||+||+|++.|.|+++||.+||.|+|.+
T Consensus 1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~~----niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs 74 (152)
T KOG0419|consen 1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVEN----NIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS 74 (152)
T ss_pred CC--chHHHHHHHHHHHhhcCCCCCccCCCCcc----ceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee
Confidence 88 89999999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 81 GFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 81 ~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
++||||||++|.+|+++|.. .|+|+| +.+||.+||++|..|
T Consensus 75 ~mFHPNvya~G~iClDiLqN-----rWsp~Ydva~ILtsiQslL~dP 116 (152)
T KOG0419|consen 75 KMFHPNVYADGSICLDILQN-----RWSPTYDVASILTSIQSLLNDP 116 (152)
T ss_pred eccCCCcCCCCcchHHHHhc-----CCCCchhHHHHHHHHHHHhcCC
Confidence 99999999999999999998 799999 999999999998764
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=2.5e-41 Score=238.44 Aligned_cols=111 Identities=28% Similarity=0.612 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (134)
Q Consensus 7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 86 (134)
+.|||++|+++|++++++|+.+.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~----d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN 78 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPG----NYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN 78 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCC----CccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence 789999999999999999999988765 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
|+++|.||+++|.+ +|+|++ |++||++|+++|.+|
T Consensus 79 V~~~G~iCl~iL~~-----~W~p~~ti~~iL~~i~~ll~~P 114 (152)
T PTZ00390 79 IDKLGRICLDILKD-----KWSPALQIRTVLLSIQALLSAP 114 (152)
T ss_pred ECCCCeEECccCcc-----cCCCCCcHHHHHHHHHHHHhCC
Confidence 99999999999987 799999 999999999999874
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-40 Score=233.98 Aligned_cols=112 Identities=29% Similarity=0.594 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCC
Q 032754 8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 87 (134)
Q Consensus 8 ~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV 87 (134)
.+||++|+++|++++++++++.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 3 ~~Rl~kE~~~l~~~~~~~~~~~~~~~----nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv 78 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSNCSAGPSDE----NLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI 78 (147)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEECCC----ChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence 79999999999999999999998765 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754 88 YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD 128 (134)
Q Consensus 88 ~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~ 128 (134)
+.+|.||+++|.+ +|+|++ |++||++|+++|.+|-.
T Consensus 79 ~~~G~iCl~il~~-----~W~p~~ti~~il~~i~~ll~~P~~ 115 (147)
T PLN00172 79 NSNGSICLDILRD-----QWSPALTVSKVLLSISSLLTDPNP 115 (147)
T ss_pred CCCCEEEcccCcC-----CCCCcCcHHHHHHHHHHHHhCCCC
Confidence 9999999999987 799999 99999999999887543
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-40 Score=229.74 Aligned_cols=125 Identities=30% Similarity=0.491 Sum_probs=113.1
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (134)
Q Consensus 1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (134)
|++ +.+..-|+++|++|++++..|+++...++. |+++|.|.|.||++|+|+||.|+..+.||.+||.+||+++|.|
T Consensus 1 m~~-~~a~~ll~~qlk~L~~~pv~gf~~glvd~~---dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s 76 (171)
T KOG0425|consen 1 MTS-SQASLLLLKQLKELQEEPVEGFSVGLVDDS---DIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS 76 (171)
T ss_pred Ccc-chhHHHHHHHHHHHhcCCCCccccccccCC---ceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh
Confidence 443 457888999999999999999999998875 9999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCCcch
Q 032754 81 GFFHPNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISSLDD 129 (134)
Q Consensus 81 ~i~HPnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~~~d 129 (134)
++||||||++|+||+|||.+.. .++.|+|.+ +++||++|.++|.+|-++
T Consensus 77 ~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~ 134 (171)
T KOG0425|consen 77 KMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDE 134 (171)
T ss_pred hhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCC
Confidence 9999999999999999997542 145899999 999999999988775443
No 7
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-40 Score=221.34 Aligned_cols=125 Identities=40% Similarity=0.683 Sum_probs=116.0
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (134)
Q Consensus 1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (134)
|+ ..|+|||++|+++|..++++||.+.|..+| |.++|.++|.||++|+|+||.|..++.||.+||.+||+++|.-
T Consensus 1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~Ed---nfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc 75 (165)
T KOG0426|consen 1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINED---NFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC 75 (165)
T ss_pred Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCcc---ceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec
Confidence 77 799999999999999999999999999886 9999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCceeeccCCCCC--------CCCCCChHH-HHHHHHHHHHhhCCCcchh
Q 032754 81 GFFHPNVYPSGTVCLSILNEDN--------VSSSCRFVI-YFQIMYGSGLAKISSLDDM 130 (134)
Q Consensus 81 ~i~HPnV~~~G~vcl~~l~~~~--------~~~~W~p~~-i~~vl~~i~~~l~~~~~d~ 130 (134)
.+||||||++|+||+++|.... ..+.|+|.+ ++.||+++.++|..|-++.
T Consensus 76 ~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdES 134 (165)
T KOG0426|consen 76 EMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDES 134 (165)
T ss_pred ccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCccc
Confidence 9999999999999999996432 156899999 9999999999988876653
No 8
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=216.77 Aligned_cols=121 Identities=62% Similarity=1.091 Sum_probs=114.9
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec
Q 032754 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP 79 (134)
Q Consensus 1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~ 79 (134)
|| +.++.||+.|-+.+.++.+-|+.+.|..+ ++..|++.|+|.|.|++||+||||.|++++.||++||.+||+++|.
T Consensus 1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 78 78999999999999999999999999874 5689999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 80 QGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 80 t~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
+++||||||++|.|||++|+++. +|+|+. |.+||.+||.||-+|
T Consensus 79 ~pl~HPNVypsgtVcLsiL~e~~---~W~paitikqiL~gIqdLL~~P 123 (158)
T KOG0424|consen 79 PPLFHPNVYPSGTVCLSILNEEK---DWRPAITIKQILLGIQDLLDTP 123 (158)
T ss_pred CCCcCCCcCCCCcEehhhhcccc---CCCchhhHHHHHHHHHHHhcCC
Confidence 99999999999999999999865 799999 999999999998764
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-37 Score=220.67 Aligned_cols=114 Identities=31% Similarity=0.506 Sum_probs=107.9
Q ss_pred CCcchHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 032754 1 MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK 77 (134)
Q Consensus 1 Ms~~~~~~kRl~~El~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~ 77 (134)
|| . +.+||++|.+++.+++ ..||.+....+ |+.+....|.||+|||||||.|.+.|++|++|||+||+|+
T Consensus 1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~----~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~ 73 (200)
T KOG0418|consen 1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVNE----NLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK 73 (200)
T ss_pred Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEccC----ChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence 77 5 8999999999999998 78999988886 9999999999999999999999999999999999999999
Q ss_pred ecCCCccCCC-CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 78 FPQGFFHPNV-YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 78 f~t~i~HPnV-~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
|.|+|||||| +.+|.||+++|.+ .|.+++ ++++|++||++|.++
T Consensus 74 F~TkIwHPnVSs~tGaICLDilkd-----~Wa~slTlrtvLislQalL~~p 119 (200)
T KOG0418|consen 74 FITKIWHPNVSSQTGAICLDILKD-----QWAASLTLRTVLISLQALLCAP 119 (200)
T ss_pred eeeeeecCCCCcccccchhhhhhc-----ccchhhhHHHHHHHHHHHHcCC
Confidence 9999999999 5599999999999 899999 999999999998773
No 10
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-37 Score=211.11 Aligned_cols=115 Identities=33% Similarity=0.487 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCcc
Q 032754 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 84 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 84 (134)
....|||++||..|+....+||++.|.++ |++.|..+|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~d----nlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H 103 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPESD----NLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH 103 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCcC----ceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence 56789999999999999999999999887 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754 85 PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD 128 (134)
Q Consensus 85 PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~ 128 (134)
|||+..|.||++||.+ .|+..| +++||++||++|-.|-+
T Consensus 104 PNVD~~GnIcLDILkd-----KWSa~YdVrTILLSiQSLLGEPNn 143 (175)
T KOG0421|consen 104 PNVDLSGNICLDILKD-----KWSAVYDVRTILLSIQSLLGEPNN 143 (175)
T ss_pred CCccccccchHHHHHH-----HHHHHHhHHHHHHHHHHHhCCCCC
Confidence 9999999999999998 899999 99999999999876544
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.9e-37 Score=213.69 Aligned_cols=110 Identities=37% Similarity=0.656 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCCC
Q 032754 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP 89 (134)
Q Consensus 10 Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~ 89 (134)
||++|+++++++++.|+.+.+.+++ |+++|+++|.||++|+|+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~---~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~ 77 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDD---NLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE 77 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTT---ETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCC---ChheEEEEEeccCccceecccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999998853 9999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 90 SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 90 ~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
+|+||+++|..+ .|+|++ +.+||.+|+++|..+
T Consensus 78 ~G~icl~~l~~~----~W~p~~~i~~il~~i~~ll~~p 111 (140)
T PF00179_consen 78 NGRICLDILNPE----SWSPSYTIESILLSIQSLLSEP 111 (140)
T ss_dssp TSBBGHGGGTTT----TC-TTSHHHHHHHHHHHHHHST
T ss_pred cccchhhhhhcc----cCCcccccccHHHHHHHHHhCC
Confidence 999999999964 599999 999999999998765
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=7.2e-36 Score=208.11 Aligned_cols=111 Identities=36% Similarity=0.624 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCC
Q 032754 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 88 (134)
Q Consensus 9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 88 (134)
|||++|+++|+++++.|+.+.+.++ |+.+|+++|.||++|+|+||.|+++|.||++||++||+|+|.+++|||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~----~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEE----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCC----ChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 7999999999999999999998876 999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754 89 PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL 127 (134)
Q Consensus 89 ~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~ 127 (134)
.+|.||+++|..+ +|+|++ +++||.+|+++|.++.
T Consensus 78 ~~G~icl~~l~~~----~W~p~~~l~~il~~i~~~l~~p~ 113 (141)
T cd00195 78 ENGKICLSILKTH----GWSPAYTLRTVLLSLQSLLNEPN 113 (141)
T ss_pred CCCCCchhhcCCC----CcCCcCcHHHHHHHHHHHHhCCC
Confidence 9999999999873 499999 9999999999998643
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.3e-34 Score=202.69 Aligned_cols=113 Identities=38% Similarity=0.618 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCC
Q 032754 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 88 (134)
Q Consensus 9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~ 88 (134)
+||++|+++++++++.|+.+.+.+++ |+.+|+++|.||++|+|+||.|++.|.||++||++||+|+|.+++|||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~---~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDED---NLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCC---ChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 59999999999999999999887653 999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754 89 PSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD 128 (134)
Q Consensus 89 ~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~ 128 (134)
++|.||+++|..+ +|+|++ +++||.+|+++|.++..
T Consensus 78 ~~G~icl~~l~~~----~W~p~~~l~~il~~i~~~l~~p~~ 114 (145)
T smart00212 78 SSGEICLDILKQE----KWSPATTLETVLLSIQSLLSEPNP 114 (145)
T ss_pred CCCCEehhhcCCC----CCCCCCcHHHHHHHHHHHHhCCCC
Confidence 9999999999832 799999 99999999999877543
No 14
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-33 Score=185.96 Aligned_cols=114 Identities=30% Similarity=0.533 Sum_probs=107.1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCC-c
Q 032754 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-F 83 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~ 83 (134)
..|.+||+|||.+|+.++|.|+.....+ |+.+|.+-+.|.+||.|+|.+|.+.++||+.||+..|.|.|..++ .
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v~d-----nlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~ 88 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRVTD-----NLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL 88 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeeccc-----chheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence 5688999999999999999999987543 999999999999999999999999999999999999999999876 7
Q ss_pred cCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCcc
Q 032754 84 HPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSLD 128 (134)
Q Consensus 84 HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~~ 128 (134)
||+||.+|.||+++|.+ +|+|++ +.+|.++|.++|.+..+
T Consensus 89 HPHiYSNGHICL~iL~d-----~WsPAmsv~SvClSIlSMLSSs~e 129 (161)
T KOG0427|consen 89 HPHIYSNGHICLDILYD-----SWSPAMSVQSVCLSILSMLSSSKE 129 (161)
T ss_pred CCceecCCeEEEEeecc-----cCCcchhhHHHHHHHHHHHccCcc
Confidence 99999999999999998 799999 99999999999988554
No 15
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-33 Score=188.10 Aligned_cols=111 Identities=29% Similarity=0.451 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCC
Q 032754 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 86 (134)
Q Consensus 7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 86 (134)
+.+||+||+.+|++++...+.-...++ .|+..|.+.+. |++.||..|.|+++|.||.+|||+||+|.|.|+|||||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e---~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN 78 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDE---ANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN 78 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhccc---ccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence 789999999999999887655433443 39999999999 89999999999999999999999999999999999999
Q ss_pred CCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCC
Q 032754 87 VYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKIS 125 (134)
Q Consensus 87 V~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~ 125 (134)
|++.|.+|+.++..+ +|+|++ .++||+++.+++-.
T Consensus 79 VDe~gqvClPiis~E----nWkP~T~teqVlqaLi~liN~ 114 (153)
T KOG0422|consen 79 VDEKGQVCLPIISAE----NWKPATRTEQVLQALIALIND 114 (153)
T ss_pred CCCCCceeeeeeecc----cccCcccHHHHHHHHHHHhcC
Confidence 999999999999886 799999 99999999865443
No 16
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-30 Score=187.91 Aligned_cols=115 Identities=28% Similarity=0.413 Sum_probs=103.5
Q ss_pred CCcchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754 1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (134)
Q Consensus 1 Ms~~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (134)
|+. ..|.|||+||++.|.+++.++|.+.+..+ |+.+||..+.||++|||+||.|+.+|.||.+||++||.|++.|
T Consensus 1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p~----nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT 75 (244)
T KOG0894|consen 1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNPN----NILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT 75 (244)
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCcc----ceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence 563 78899999999999999999999999987 9999999999999999999999999999999999999999999
Q ss_pred C--CccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 81 G--FFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 81 ~--i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
+ .|-+ +-++|||+.+.+ .+.|+|+| +.+||.++.+.|.++
T Consensus 76 PNGRFkt----ntRLCLSiSDfH--PdsWNP~WsVStILtGLlSFM~e~ 118 (244)
T KOG0894|consen 76 PNGRFKT----NTRLCLSISDFH--PDSWNPGWSVSTILTGLLSFMTED 118 (244)
T ss_pred CCCceec----CceEEEeccccC--cCcCCCcccHHHHHHHHHHHHhcC
Confidence 3 2333 368999998763 46899999 999999999988764
No 17
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=183.04 Aligned_cols=111 Identities=30% Similarity=0.465 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecC-CCCCCCcc--eEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCC
Q 032754 5 GIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLM--IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG 81 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~-~~~~~~~~--~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (134)
+.+.-||++|+.++ +.+++++..... .+ +++ +++++|. |+++.|+||.|.|.+.+|+.||++||+|+|+|+
T Consensus 27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~---d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk 100 (184)
T KOG0420|consen 27 SAALLRLKKDILEL--NLPPTCSLSFPDSPD---DLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK 100 (184)
T ss_pred cHHHHHHHhhhhhc--cCCCccccccccCCc---ccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence 45677788877777 566677653332 32 333 5999999 999999999999999999999999999999999
Q ss_pred CccCCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 82 FFHPNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 82 i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
||||||+.+|.|||+||++ +|+|+. |.+|+.++++++..+
T Consensus 101 V~HPNId~~GnVCLnILRe-----dW~P~lnL~sIi~GL~~LF~ep 141 (184)
T KOG0420|consen 101 VYHPNIDLDGNVCLNILRE-----DWRPVLNLNSIIYGLQFLFLEP 141 (184)
T ss_pred cccCCcCCcchHHHHHHHh-----cCccccchHHHHHHHHHHhccC
Confidence 9999999999999999999 799999 999999999987663
No 18
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-30 Score=179.02 Aligned_cols=112 Identities=21% Similarity=0.409 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85 (134)
Q Consensus 6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 85 (134)
...|||..|+.+|.... ..+...++ ++.+++|.+.||.+|+|+||+|++++.+|++||++.|.|.|.++||||
T Consensus 3 ~~~rRid~Dv~KL~~s~---yeV~~ind----~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHP 75 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMSD---YEVTIIND----GMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHP 75 (189)
T ss_pred CcccchhhHHHHHHhcC---CeEEEecC----cccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCC
Confidence 46799999999998754 45666664 799999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCceeeccCCCCCCCCCCChHH-HHHHHHHH--HHhhCCCcch
Q 032754 86 NVYP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGS--GLAKISSLDD 129 (134)
Q Consensus 86 nV~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i--~~~l~~~~~d 129 (134)
||+. +|.|||+++++ .|+|.+ +..|+..+ |.|...+|.|
T Consensus 76 NIDe~SGsVCLDViNQ-----tWSp~yDL~NIfetfLPQLL~YPNp~D 118 (189)
T KOG0416|consen 76 NIDEASGSVCLDVINQ-----TWSPLYDLVNIFETFLPQLLRYPNPSD 118 (189)
T ss_pred CchhccCccHHHHHhh-----hhhHHHHHHHHHHHHhHHHhcCCCCCC
Confidence 9955 99999999999 899999 99998777 4555555554
No 19
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-29 Score=178.39 Aligned_cols=112 Identities=25% Similarity=0.447 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85 (134)
Q Consensus 6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 85 (134)
..+|.+.+|++.|...+|.||.|.+.++ |+....+.|.||.||||++|.|+..+.+..+||.+||+-.|+|+||||
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~Nee----D~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHP 85 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVVNEE----DFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHP 85 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEecChH----HhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccC
Confidence 3678899999999999999999999887 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCC
Q 032754 86 NVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISS 126 (134)
Q Consensus 86 nV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~ 126 (134)
||-.+|.||.+.|.. +|+|.. |+.||+.|.++|+.|
T Consensus 86 NVaaNGEICVNtLKk-----DW~p~LGirHvLltikCLLI~P 122 (223)
T KOG0423|consen 86 NVAANGEICVNTLKK-----DWNPSLGIRHVLLTIKCLLIEP 122 (223)
T ss_pred CcccCceehhhhhhc-----ccCcccchhhHhhhhheeeecC
Confidence 999999999999999 799999 999999999988764
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.9e-25 Score=162.10 Aligned_cols=113 Identities=25% Similarity=0.365 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCc
Q 032754 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 83 (134)
Q Consensus 4 ~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 83 (134)
.+.+.|||++|.++|+ ++.....+.+.++ |+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+..+|
T Consensus 9 KnpaVkRlmkEa~El~-~Ptd~yha~plEd----NlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT--- 80 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELK-DPTDHYHAQPLED----NLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT--- 80 (314)
T ss_pred cCHHHHHHHHHHHHhc-Cchhhhhhccchh----ceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc---
Confidence 3679999999999998 8888888889887 9999999999999999999999999999999999999999998
Q ss_pred cCCC-CC-CCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754 84 HPNV-YP-SGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL 127 (134)
Q Consensus 84 HPnV-~~-~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~ 127 (134)
||- .+ +-+||++|.+- +.+.|.|+| |++.|++|..+|-+.|
T Consensus 81 -pNGRFE~nkKiCLSISgy--HPEtWqPSWSiRTALlAlIgFmPt~p 124 (314)
T KOG0428|consen 81 -PNGRFEVNKKICLSISGY--HPETWQPSWSIRTALLALIGFMPTKP 124 (314)
T ss_pred -CCCceeeCceEEEEecCC--CccccCcchhHHHHHHHHHccccCCC
Confidence 665 33 45799999875 356899999 9999999998765544
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.4e-19 Score=154.52 Aligned_cols=113 Identities=26% Similarity=0.485 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCC--CccCC
Q 032754 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHPN 86 (134)
Q Consensus 9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPn 86 (134)
+..+.|.+-|..+.+.+|.|...++ .+.-..+.|.||.+|||.+|.|.|.|.||++||.+||.+...+. .++||
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~e~----r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn 929 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAYED----RMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN 929 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEechH----HHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence 4455567777778999999999886 66667899999999999999999999999999999999999974 58999
Q ss_pred CCCCCceeeccCCCCCC--CCCCChHH-HHHHHHHHHHhhCC
Q 032754 87 VYPSGTVCLSILNEDNV--SSSCRFVI-YFQIMYGSGLAKIS 125 (134)
Q Consensus 87 V~~~G~vcl~~l~~~~~--~~~W~p~~-i~~vl~~i~~~l~~ 125 (134)
.|++|+||+++|+.|.+ .+.|+|+- +.+||.+||.|.++
T Consensus 930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~ 971 (1101)
T KOG0895|consen 930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLN 971 (1101)
T ss_pred cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcc
Confidence 99999999999999963 67899988 99999999998665
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1e-16 Score=137.20 Aligned_cols=118 Identities=25% Similarity=0.466 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCC---
Q 032754 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--- 81 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--- 81 (134)
....+|+++|++.+.++.++|+.+.+.+. .....++.|.||.+|||++|.|.|.|.||..||..||.|+++|.
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~----RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~ 356 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEG----RMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGV 356 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCcccccccc----ccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccce
Confidence 34679999999999999999999999886 88889999999999999999999999999999999999999986
Q ss_pred CccCCCCCCCceeeccCCCCCC--CCCCChH-H-HHHHHHHHHHhhCCC
Q 032754 82 FFHPNVYPSGTVCLSILNEDNV--SSSCRFV-I-YFQIMYGSGLAKISS 126 (134)
Q Consensus 82 i~HPnV~~~G~vcl~~l~~~~~--~~~W~p~-~-i~~vl~~i~~~l~~~ 126 (134)
.+.||.|.+|+||+++|..|.. -+.|+|. . +.++|.+||.++...
T Consensus 357 R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 357 RLNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred eecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 6899999999999999987753 2479999 4 999999999987765
No 23
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.4e-16 Score=114.97 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCC--CCCeeeecCCCccCC
Q 032754 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHPN 86 (134)
Q Consensus 9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPn 86 (134)
--|+.|+..+.+++-+||+|.|.-. |-..|-.+|.+..| .|.||+|+|+|.+|++||. +-|+|.|.+.++||+
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSya----n~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ 96 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYA----NKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPL 96 (258)
T ss_pred HHHHHHHHHHHhccCCceEEccccc----ccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccc
Confidence 4577888888889999999999987 88999999997665 8999999999999999994 479999999999999
Q ss_pred CCC-CCceeeccCCCCCCCCCCChHH--HHHHHHHHHHhhCCCcchh
Q 032754 87 VYP-SGTVCLSILNEDNVSSSCRFVI--YFQIMYGSGLAKISSLDDM 130 (134)
Q Consensus 87 V~~-~G~vcl~~l~~~~~~~~W~p~~--i~~vl~~i~~~l~~~~~d~ 130 (134)
|.+ ++.+|++-... .|+-.. |++||..+|..+.++.++.
T Consensus 97 icp~skeLdl~raf~-----eWRk~ehhiwqvL~ylqriF~dpd~si 138 (258)
T KOG0429|consen 97 ICPKSKELDLNRAFP-----EWRKEEHHIWQVLVYLQRIFYDPDVSI 138 (258)
T ss_pred cCCCccceeHhhhhh-----hhhccccHHHHHHHHHHHHhcCcccch
Confidence 955 88999987776 698888 9999999999888776654
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.4e-14 Score=98.31 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccC
Q 032754 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85 (134)
Q Consensus 6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 85 (134)
+..-||.+|+.+-++...++...+..+++++--+..|..+|.||+.|+||+.+|.++|...++||..||+|+|.+++--+
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 44567888988887766666666666665555667999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCC
Q 032754 86 NV-YPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKIS 125 (134)
Q Consensus 86 nV-~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~ 125 (134)
.| ..+|.|.-..+.--+ +|+-.+ ++.||.+++..|.+
T Consensus 85 gvn~~~g~Vd~~~i~~L~---~W~~~y~~~~vl~~lr~~m~~ 123 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLA---RWQRSYSIKMVLGQLRKEMMS 123 (138)
T ss_pred ccccCCCccCccccchhh---cccccchhhHHHHhhhHHHHH
Confidence 88 446666543332111 699999 99999999876554
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.4e-09 Score=69.37 Aligned_cols=63 Identities=14% Similarity=0.299 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCCCCCCeeeecCCCcc-CCCCCCCceeeccCCCCCCCCCCChHH-HHHHHHHHHHhhCC
Q 032754 59 FPLTLYFSEDYPSKPPKCKFPQGFFH-PNVYPSGTVCLSILNEDNVSSSCRFVI-YFQIMYGSGLAKIS 125 (134)
Q Consensus 59 f~~~i~fp~~YP~~pP~v~f~t~i~H-PnV~~~G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~ 125 (134)
.-+.+.|+++||+.||.+|...++-. --|-.+|+||+.+|..+ +|+.++ |+.++++|...++.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q----gwssay~Ve~vi~qiaatlVk 77 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ----GWSSAYEVERVIMQIAATLVK 77 (122)
T ss_pred eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc----cccchhhHHHHHHHHHHHhhc
Confidence 34678899999999999998875432 33366899999999986 899999 99999999987765
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.74 E-value=4.3e-08 Score=67.65 Aligned_cols=68 Identities=25% Similarity=0.415 Sum_probs=58.7
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeecCCC---ccCCCCCCCceee---ccCCCCCCCCCCChHH-HHHHHHHHHHhhCCCc
Q 032754 55 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNVSSSCRFVI-YFQIMYGSGLAKISSL 127 (134)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnV~~~G~vcl---~~l~~~~~~~~W~p~~-i~~vl~~i~~~l~~~~ 127 (134)
.|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ +..-+ .|.|.. +..+|.+.+.+|...+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D-----~~~P~~~~~~~l~~a~~lL~~~~ 108 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD-----PWDPEGIIADCLERAIRLLEDGL 108 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC-----ccCHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999998644 6899999999999 55555 799999 9999988887776543
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.26 E-value=2.4e-06 Score=58.14 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=52.4
Q ss_pred CcceEEEEEcCCCCCCCCCCEEE--EEEEcCCCCCCCCCeeeecCCC-----ccCCCCCCCceeeccCCCCCCCCCCCh-
Q 032754 38 NLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQGF-----FHPNVYPSGTVCLSILNEDNVSSSCRF- 109 (134)
Q Consensus 38 ~~~~w~~~i~gp~~t~y~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~HPnV~~~G~vcl~~l~~~~~~~~W~p- 109 (134)
.+.....+|. -.|+|..|. +.|-+|.+||.+||.+...... -+.+|+.+|+|.+..|.. |++
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~------W~~~ 100 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN------WNPP 100 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--------TT
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc------CCCC
Confidence 4444444443 358888885 5566899999999999887422 245999999999999986 888
Q ss_pred HH-HHHHHHHHHHhhCC
Q 032754 110 VI-YFQIMYGSGLAKIS 125 (134)
Q Consensus 110 ~~-i~~vl~~i~~~l~~ 125 (134)
.. +..++..++..+..
T Consensus 101 ~s~L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 101 SSNLVDLVQELQAVFSE 117 (121)
T ss_dssp TS-HHHHHHHHHHCCCH
T ss_pred CCCHHHHHHHHHHHHhH
Confidence 44 88888888766554
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=98.00 E-value=4.2e-06 Score=57.87 Aligned_cols=76 Identities=29% Similarity=0.460 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHc-------CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEcCCC
Q 032754 6 IARGRLTEERKAWRKN-------HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSED 68 (134)
Q Consensus 6 ~~~kRl~~El~~l~~~-------~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~ 68 (134)
.-..||..|++.|-+- ....+.+. .-++||-|.|.+ |.+++++|..
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le-----------------sn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~t 86 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLE-----------------SNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVT 86 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEE-----------------E-TTSSEEEEEEEEEETTEEEEEEEEEE--TT
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEec-----------------cCCCCCccccEEEEEeeeeeEEEeeecCCCcc
Confidence 4578999999988751 12223332 224455555543 5567778999
Q ss_pred CCCCCCeeeecCC-CccCCCCCCCceeeccC
Q 032754 69 YPSKPPKCKFPQG-FFHPNVYPSGTVCLSIL 98 (134)
Q Consensus 69 YP~~pP~v~f~t~-i~HPnV~~~G~vcl~~l 98 (134)
||..||.|....- --..-.|..|+||++.-
T Consensus 87 YP~t~pEi~lPeLdGKTaKMYRGGkIClt~H 117 (161)
T PF08694_consen 87 YPTTAPEIALPELDGKTAKMYRGGKICLTDH 117 (161)
T ss_dssp TTTS----B-GGGTTT-SSBCCCCBB---TT
T ss_pred CCCCCcceeccccCCchhhhhcCceEeeecc
Confidence 9999999987642 22355688999999764
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00022 Score=55.82 Aligned_cols=90 Identities=19% Similarity=0.266 Sum_probs=65.5
Q ss_pred cCCCCCCCcceEEEEEcCCCCCCCCCCEEEEE--EEcCCCCCCCCCeeeecC-C----CccCCCCCCCceeeccCCCCCC
Q 032754 31 ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT--LYFSEDYPSKPPKCKFPQ-G----FFHPNVYPSGTVCLSILNEDNV 103 (134)
Q Consensus 31 ~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~--i~fp~~YP~~pP~v~f~t-~----i~HPnV~~~G~vcl~~l~~~~~ 103 (134)
..++...+++.. .|---.+|.|.+|.+= |=+.+.||..||.+.... . -.|-+|+.+|+|.|..|..
T Consensus 44 ~~Dg~s~~ll~~----~GTIp~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~--- 116 (365)
T KOG2391|consen 44 HNDGRSRLLLQL----DGTIPVPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN--- 116 (365)
T ss_pred ecCCCccchhhc----cCcccccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---
Confidence 333334455554 4444457888887755 557999999999987662 1 1399999999999999986
Q ss_pred CCCCChHH--HHHHHHHHHHhhCCCcchh
Q 032754 104 SSSCRFVI--YFQIMYGSGLAKISSLDDM 130 (134)
Q Consensus 104 ~~~W~p~~--i~~vl~~i~~~l~~~~~d~ 130 (134)
|.+.- +..++..+.+.+..+|-++
T Consensus 117 ---W~~pssdLv~Liq~l~a~f~~~pP~y 142 (365)
T KOG2391|consen 117 ---WDPPSSDLVGLIQELIAAFSEDPPVY 142 (365)
T ss_pred ---CCCccchHHHHHHHHHHHhcCCCccc
Confidence 97766 8888888888877765443
No 30
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.00034 Score=47.85 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEcCCCCCCCCCe
Q 032754 6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSEDYPSKPPK 75 (134)
Q Consensus 6 ~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~----------f~~~i~fp~~YP~~pP~ 75 (134)
.-..||..|++.|.+.-.. ..+ +-..|.-.-..++||-|-|.+ |.+++.+|-.||..+|.
T Consensus 27 ~wvqrlkeey~sli~yvqn------nk~----~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAYVQN------NKS----NDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred HHHHHHHHHHHHHHHHHHh------Ccc----cCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 3568999999998752211 111 122233333557888888865 55677789999999999
Q ss_pred eeecCCC-ccCCCCCCCceeeccC
Q 032754 76 CKFPQGF-FHPNVYPSGTVCLSIL 98 (134)
Q Consensus 76 v~f~t~i-~HPnV~~~G~vcl~~l 98 (134)
+....-- -.-..|..|+||+.--
T Consensus 97 ialpeldgktakmyrggkiclt~h 120 (167)
T KOG3357|consen 97 IALPELDGKTAKMYRGGKICLTDH 120 (167)
T ss_pred ccccccCchhhhhhcCceEeeccc
Confidence 8765311 1233477899999754
No 31
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.17 E-value=0.026 Score=36.78 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (134)
Q Consensus 9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (134)
.+.+.|+..|..==+... ..... .+...+.+.+.+ ...+.-....+++.+.||++||..+|.|...+
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~ 72 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIES----KSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLES 72 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTS----SSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-ccccc----CCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence 456778877775322222 11111 244556666632 23334446689999999999999999998765
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.87 E-value=0.098 Score=35.62 Aligned_cols=92 Identities=12% Similarity=0.149 Sum_probs=57.2
Q ss_pred CeEEeecCCCCCCCcceEEEEEcC--CCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCCccCCCCCCCc-e--eeccCC
Q 032754 25 GFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGT-V--CLSILN 99 (134)
Q Consensus 25 ~~~~~~~~~~~~~~~~~w~~~i~g--p~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~-v--cl~~l~ 99 (134)
|+..+...+ .-..|.+ |.| -+.+.|....-.+.|.+|..||..+|-+-+..+-.. ..+|. + |-+...
T Consensus 13 g~~~E~v~e----g~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~---~~~G~~iP~~~~~~~ 84 (122)
T PF14462_consen 13 GLRWETVTE----GGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLK---LADGGPIPNAAEVTQ 84 (122)
T ss_pred CceEEEEEe----CCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceE---ccCCCcCCchhcchh
Confidence 555555544 3445655 555 345579999999999999999999886655543221 12222 3 332221
Q ss_pred CC---------CCCCCCChHH--HHHHHHHHHHhhC
Q 032754 100 ED---------NVSSSCRFVI--YFQIMYGSGLAKI 124 (134)
Q Consensus 100 ~~---------~~~~~W~p~~--i~~vl~~i~~~l~ 124 (134)
.- ++...|+|.. |.+.|..|...|.
T Consensus 85 ~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 85 TFDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred hcCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 10 1233799988 9999988876653
No 33
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.32 E-value=0.17 Score=32.61 Aligned_cols=25 Identities=20% Similarity=0.382 Sum_probs=21.8
Q ss_pred CCEEEEEEEcCCCCCCCCCeeeecC
Q 032754 56 GGYFPLTLYFSEDYPSKPPKCKFPQ 80 (134)
Q Consensus 56 gg~f~~~i~fp~~YP~~pP~v~f~t 80 (134)
.-.+.+.+.+|.+||..+|.|.+.+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEEC
Confidence 4568899999999999999998875
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=94.29 E-value=0.063 Score=38.29 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=42.2
Q ss_pred EEEEcCCCCCCCCCeeeecCCCc---cCCCCCC-----CceeeccCCCCCCCCCCChHH-HHHHHHHHHH
Q 032754 61 LTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNVSSSCRFVI-YFQIMYGSGL 121 (134)
Q Consensus 61 ~~i~fp~~YP~~pP~v~f~t~i~---HPnV~~~-----G~vcl~~l~~~~~~~~W~p~~-i~~vl~~i~~ 121 (134)
+.|.|+.+||..+|.|.++-+.| +||+... ..+|+.--.-. .|.+.. ++.+|..|..
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~----e~~~~~g~~~~l~rl~~ 122 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWS----EWRPSWGPEGFLDRLFD 122 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHH----HhhhccCHHHHHHHHHH
Confidence 56899999999999887775543 4666554 66999765543 588888 8888877764
No 35
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.30 E-value=4 Score=36.00 Aligned_cols=67 Identities=12% Similarity=0.077 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCC-CCeeeecC
Q 032754 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSK-PPKCKFPQ 80 (134)
Q Consensus 9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~-pP~v~f~t 80 (134)
.-|..|+.-+-. +-+++.++-.+- .-..--+.+.||-...-.--..++.|.||.+||.+ +|.++|..
T Consensus 423 QnLgeE~S~Ig~-k~~nV~fEkidv----a~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~ 490 (1081)
T KOG0309|consen 423 QNLGEEFSLIGV-KIRNVNFEKIDV----ADRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFEN 490 (1081)
T ss_pred hhHHhHHhHhhc-cccccceEeecc----ccceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEec
Confidence 446666665543 334444432221 22344566777654332223457889999999976 79999985
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.19 E-value=4.5 Score=30.10 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=25.9
Q ss_pred CcceEEEEEcCCCCC--CCCCCEEEEEEEcCCCCCCCCCee
Q 032754 38 NLMIWECIIPGKTGT--DWEGGYFPLTLYFSEDYPSKPPKC 76 (134)
Q Consensus 38 ~~~~w~~~i~gp~~t--~y~gg~f~~~i~fp~~YP~~pP~v 76 (134)
+...+.++|.-..+. -|.| .+.+.+.++.+||..||-+
T Consensus 29 ~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 29 DPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred CCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcce
Confidence 444466666632221 1222 7889999999999999999
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=74.19 E-value=14 Score=28.85 Aligned_cols=58 Identities=21% Similarity=0.263 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeee
Q 032754 7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK 77 (134)
Q Consensus 7 ~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~ 77 (134)
..++|.+|+.++..+.. +.+.... ++...++.+.. + ...-.++|.++.+||.++|.+.
T Consensus 100 ~ys~ll~EIe~IGW~kl--~~i~~d~-----~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~ 157 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL--VQIQFDD-----DLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCS 157 (291)
T ss_dssp GC-CHHHHHHHHHCGCC--EEEEE-C-----CCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEEC
T ss_pred HHHHHHHHHHHhccccc--eEEecCC-----CccEEEEEEEc---C---CceEEEEEEECCCCCCCCceee
Confidence 34678899998876553 3332233 77877777772 1 2567899999999999999754
No 38
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=72.32 E-value=1.9 Score=30.92 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=15.5
Q ss_pred CCCcc---CCCCCCCceeeccCC
Q 032754 80 QGFFH---PNVYPSGTVCLSILN 99 (134)
Q Consensus 80 t~i~H---PnV~~~G~vcl~~l~ 99 (134)
|+.|| +||+.+|+||+.-..
T Consensus 90 T~Ly~aPf~NV~~~g~vC~G~~~ 112 (175)
T PF14460_consen 90 TPLYHAPFFNVYSNGSVCWGNNS 112 (175)
T ss_pred CeeEeCCccccCCCCcEeeCCCc
Confidence 45565 899999999997643
No 39
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=69.81 E-value=13 Score=29.61 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=40.9
Q ss_pred CCCCCEEEEEEEcCCCCCCCCCeeeec-CCCccCCCCCCCceeeccCCCCCCCCCCChHH---HHHHHHHHH
Q 032754 53 DWEGGYFPLTLYFSEDYPSKPPKCKFP-QGFFHPNVYPSGTVCLSILNEDNVSSSCRFVI---YFQIMYGSG 120 (134)
Q Consensus 53 ~y~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnV~~~G~vcl~~l~~~~~~~~W~p~~---i~~vl~~i~ 120 (134)
||.|...+-.|.|...||..||-+.|- ..-|+|-.. . +..|. +|++.- +..++..++
T Consensus 61 Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L~------~Wd~~dp~~Ll~li~EL~ 121 (333)
T PF06113_consen 61 PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSLV------NWDPSDPNCLLNLISELR 121 (333)
T ss_pred eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchhh------cCCCCCchHHHHHHHHHH
Confidence 588999999999999999999999997 334888532 1 23444 475544 556665554
No 40
>smart00340 HALZ homeobox associated leucin zipper.
Probab=65.08 E-value=6.5 Score=21.67 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHcC
Q 032754 7 ARGRLTEERKAWRKNH 22 (134)
Q Consensus 7 ~~kRl~~El~~l~~~~ 22 (134)
-.+||++|+++|..-+
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4589999999998643
No 41
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=64.03 E-value=11 Score=26.15 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=22.4
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeeeec
Q 032754 55 EGGYFPLTLYFSEDYP-SKPPKCKFP 79 (134)
Q Consensus 55 ~gg~f~~~i~fp~~YP-~~pP~v~f~ 79 (134)
+.|.|.|.-.+|..|| .+||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 3588999999999999 999999887
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=59.90 E-value=14 Score=26.97 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeeeecC
Q 032754 55 EGGYFPLTLYFSEDYPSKPPKCKFPQ 80 (134)
Q Consensus 55 ~gg~f~~~i~fp~~YP~~pP~v~f~t 80 (134)
+.|.|.|+=.+|--||.+||.|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35889999999999999999998873
No 43
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=58.54 E-value=22 Score=27.18 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=30.8
Q ss_pred CcceEEEEEcCCCCCCCCC---CEEEEEEEcC-----CCCCCCCCeeeecCCCc
Q 032754 38 NLMIWECIIPGKTGTDWEG---GYFPLTLYFS-----EDYPSKPPKCKFPQGFF 83 (134)
Q Consensus 38 ~~~~w~~~i~gp~~t~y~g---g~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 83 (134)
|..-|++...--+.-...| ..|+.++++. .|-||+||+|+.+++-|
T Consensus 101 Dp~PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 101 DPIPWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CCCCeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 4455776666333333333 3467777774 79999999999998765
No 44
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=57.12 E-value=6.2 Score=29.75 Aligned_cols=18 Identities=22% Similarity=0.599 Sum_probs=14.0
Q ss_pred CCcc---CCCCCCCceeeccC
Q 032754 81 GFFH---PNVYPSGTVCLSIL 98 (134)
Q Consensus 81 ~i~H---PnV~~~G~vcl~~l 98 (134)
+.|| +||+.+|+||+.-.
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~ 152 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNA 152 (228)
T ss_pred eeccCCcCccCCCCeEeeCCC
Confidence 4555 79999999998654
No 45
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=52.19 E-value=22 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.0
Q ss_pred CCEEEEEEEcCCCCC-----CCCCeeeecC
Q 032754 56 GGYFPLTLYFSEDYP-----SKPPKCKFPQ 80 (134)
Q Consensus 56 gg~f~~~i~fp~~YP-----~~pP~v~f~t 80 (134)
.|.|.|+=.+|.-|| .+||.|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999998873
No 46
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.12 E-value=39 Score=24.67 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=32.6
Q ss_pred chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCC
Q 032754 4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTG 51 (134)
Q Consensus 4 ~~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~ 51 (134)
+....+||++|++.+.++-...++.-|.-+ ....+.+.+.--++
T Consensus 117 ~~k~~~~iq~EIraviRQItasVtfLP~Le----~~ctFdvLiyTdkD 160 (203)
T KOG3285|consen 117 RVKDLKRIQNEIRAVIRQITASVTFLPLLE----EICTFDVLIYTDKD 160 (203)
T ss_pred chhHHHHHHHHHHHHHHHHhhheeeccccc----ceeEEEEEEEeCCC
Confidence 456789999999999998877777766655 55667777664443
No 47
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=46.94 E-value=6 Score=20.44 Aligned_cols=18 Identities=22% Similarity=0.687 Sum_probs=10.5
Q ss_pred CccCCCCCCCc-eeeccCC
Q 032754 82 FFHPNVYPSGT-VCLSILN 99 (134)
Q Consensus 82 i~HPnV~~~G~-vcl~~l~ 99 (134)
.|||.++.+|+ .|.....
T Consensus 2 ~yHPg~~~~g~W~CC~q~~ 20 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCKQTD 20 (32)
T ss_dssp EE-SS-EETTCESSSS-SS
T ss_pred CcCCCcccCCcCcCCCCcC
Confidence 48999988887 5654443
No 48
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=46.51 E-value=28 Score=27.51 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.8
Q ss_pred CEEEEEEEcCCCCCCCCCeeeecCC
Q 032754 57 GYFPLTLYFSEDYPSKPPKCKFPQG 81 (134)
Q Consensus 57 g~f~~~i~fp~~YP~~pP~v~f~t~ 81 (134)
-++.+.+..+.+||...|+|+...+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 4677888999999999999998864
No 49
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=41.62 E-value=71 Score=20.46 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=20.8
Q ss_pred CCCCEEEEEEEcCCCCCCCCCeeeecCC
Q 032754 54 WEGGYFPLTLYFSEDYPSKPPKCKFPQG 81 (134)
Q Consensus 54 y~gg~f~~~i~fp~~YP~~pP~v~f~t~ 81 (134)
-+|..+.+.-.-|..|| +|.|.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 45777788888889999 599999864
No 50
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=40.95 E-value=35 Score=27.22 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=20.8
Q ss_pred CEEEEEEEcCCCCCCCCCeeeecC
Q 032754 57 GYFPLTLYFSEDYPSKPPKCKFPQ 80 (134)
Q Consensus 57 g~f~~~i~fp~~YP~~pP~v~f~t 80 (134)
-.|-+.|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 357788899999999999999875
No 51
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=40.35 E-value=40 Score=24.65 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.6
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeeeec
Q 032754 56 GGYFPLTLYFSEDYPS-----KPPKCKFP 79 (134)
Q Consensus 56 gg~f~~~i~fp~~YP~-----~pP~v~f~ 79 (134)
.|.|.|+=..|..||. +||.|.|.
T Consensus 96 ~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 96 SGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 4789999999999998 88888776
No 52
>smart00107 BTK Bruton's tyrosine kinase Cys-rich motif. Zinc-binding motif containing conserved cysteines and a histidine. Always found C-terminal to PH domains (but not all PH domains are followed by BTK motifs). The crystal structure shows this motif packs against the PH domain. The PH+Btk module pair has been called the Tec homology (TH) region.
Probab=39.73 E-value=14 Score=19.63 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=12.5
Q ss_pred CccCCCCCCCc-eeeccC
Q 032754 82 FFHPNVYPSGT-VCLSIL 98 (134)
Q Consensus 82 i~HPnV~~~G~-vcl~~l 98 (134)
-|||..+.+|+ .|..-.
T Consensus 7 ~yHP~~~~~G~W~CC~q~ 24 (36)
T smart00107 7 KYHPSFWVDGKWLCCQQS 24 (36)
T ss_pred ccCCCceeCCeEccCCCc
Confidence 48999998887 555433
No 53
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=36.44 E-value=51 Score=23.93 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=19.7
Q ss_pred CCEEEEEEEcCCCCCC-----CCCeeeec
Q 032754 56 GGYFPLTLYFSEDYPS-----KPPKCKFP 79 (134)
Q Consensus 56 gg~f~~~i~fp~~YP~-----~pP~v~f~ 79 (134)
.|.|.|+=.+|.-||. .||.|+|.
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 3789999999999995 77877665
No 54
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=36.00 E-value=1.1e+02 Score=19.14 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=26.8
Q ss_pred ceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCCC
Q 032754 40 MIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82 (134)
Q Consensus 40 ~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i 82 (134)
++|.+.+.|+.+.--..-+=++.+.+-+.|+. |...+..+-
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~pP 42 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKPP 42 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSSTT
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCCC
Confidence 57999999888754444566788888888775 666665553
No 55
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=35.53 E-value=68 Score=26.20 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEE--EcCCCCCCCCCCEEE---------EEEEcCCCCCCCCCeeee
Q 032754 10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECI--IPGKTGTDWEGGYFP---------LTLYFSEDYPSKPPKCKF 78 (134)
Q Consensus 10 Rl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~--i~gp~~t~y~gg~f~---------~~i~fp~~YP~~pP~v~f 78 (134)
.+..|.++|....|..-.+.... . |++. +. |. --+-.+.|+ +. .|...|++.||-+++
T Consensus 249 ~ne~Ev~Rir~eHPdd~~~vv~~-----~---~RvkG~L~-vs-RAfGd~~lK~~~~n~e~l~~-~fr~~~~~t~Pylta 317 (390)
T KOG0700|consen 249 SNEDEVRRIRSEHPDDPHIVVNK-----H---WRVKGILQ-VS-RAFGDGYLKWPEFNQEPLLE-KFRIPYIGTPPYLTA 317 (390)
T ss_pred ccHHHHHHHHHhCCCCcceEeec-----c---ceeeEEEE-ee-eeccceeecchhhccchhHh-hcCCCCCCCCCceec
Confidence 35678888888776554443332 1 4332 32 21 123333333 11 678899999999999
Q ss_pred cCCCccCCCCCCCc
Q 032754 79 PQGFFHPNVYPSGT 92 (134)
Q Consensus 79 ~t~i~HPnV~~~G~ 92 (134)
...|+|.-+.++.+
T Consensus 318 eP~i~~HrL~p~Dk 331 (390)
T KOG0700|consen 318 EPSITHHKLTPNDK 331 (390)
T ss_pred cceEEEEEcCCCCe
Confidence 99999888877656
No 56
>PRK15486 hpaC 4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional
Probab=29.42 E-value=31 Score=24.63 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec---CCCccCCC
Q 032754 11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP---QGFFHPNV 87 (134)
Q Consensus 11 l~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~---t~i~HPnV 87 (134)
+..++++.+..-+.|+.+.-...+ +.+ .|-+-.--..++ .+||.|-+. ...-|+-|
T Consensus 6 ~~~~fr~am~~~a~GV~VVTt~~~----------------~~~-~G~Tvss~~SvS----ldPPlvlv~l~~~s~~~~~i 64 (170)
T PRK15486 6 QRLRFRDAMASLSAAVNIVTTAGD----------------AGR-CGITATAVCSVT----DTPPSVMVCINANSAMNPVF 64 (170)
T ss_pred hHHHHHHHHhccCCceEEEEEecC----------------CCc-EEEEEEEEEEeE----cCCCEEEEEECCCCchhHHH
Confidence 456788888888889887554321 111 121111112222 459988776 34678999
Q ss_pred CCCCceeeccCCCC
Q 032754 88 YPSGTVCLSILNED 101 (134)
Q Consensus 88 ~~~G~vcl~~l~~~ 101 (134)
.++|++|+++|..+
T Consensus 65 ~~sg~F~VnvL~~~ 78 (170)
T PRK15486 65 QGNGKLCINVLNHE 78 (170)
T ss_pred HhCCeEEEEEChhh
Confidence 99999999999864
No 57
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=28.92 E-value=1.6e+02 Score=22.84 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=36.5
Q ss_pred EEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeecCC--------------------------CccCCCC--CCCceeec
Q 032754 45 IIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--------------------------FFHPNVY--PSGTVCLS 96 (134)
Q Consensus 45 ~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~--------------------------i~HPnV~--~~G~vcl~ 96 (134)
.+.|..++-| ||.+++++.- ++||...=...+-.. ..|-|+. .+|+||+.
T Consensus 170 ~m~~~gd~AY-Gg~~Ea~lr~-kDyPi~~~~~tlglS~m~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~~Gqisik 247 (273)
T PF11886_consen 170 AMRGQGDVAY-GGNLEATLRG-KDYPIGQDQSTLGLSLMKWRGDLALGANLQSQFSVGRGSKMAVRANLNNKGTGQISIK 247 (273)
T ss_pred EeeecCceee-ceeEEEEeec-CCCCCCCcceeeeeEeEecccCeEEeecceEeeecCCCceEEEEecccCCccceEEEE
Confidence 3555667777 9999998887 689987765443311 1366663 37899997
Q ss_pred cCCC
Q 032754 97 ILNE 100 (134)
Q Consensus 97 ~l~~ 100 (134)
+-..
T Consensus 248 ~sSS 251 (273)
T PF11886_consen 248 TSSS 251 (273)
T ss_pred ecch
Confidence 6554
No 58
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=28.51 E-value=40 Score=19.93 Aligned_cols=12 Identities=33% Similarity=0.410 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHH
Q 032754 8 RGRLTEERKAWR 19 (134)
Q Consensus 8 ~kRl~~El~~l~ 19 (134)
.+||++||+++-
T Consensus 36 r~rL~kEL~d~D 47 (59)
T PF12065_consen 36 RQRLRKELQDMD 47 (59)
T ss_pred HHHHHHHHHHcc
Confidence 468888888874
No 59
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=28.47 E-value=29 Score=24.15 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=13.8
Q ss_pred EEEEEEcCCCCCCCCCe
Q 032754 59 FPLTLYFSEDYPSKPPK 75 (134)
Q Consensus 59 f~~~i~fp~~YP~~pP~ 75 (134)
|+-.-.+|.+||+.+|.
T Consensus 104 YR~KW~LP~dYPMvAPn 120 (148)
T COG4957 104 YRAKWGLPPDYPMVAPN 120 (148)
T ss_pred HHHhcCCCCCCCccchH
Confidence 55666789999999885
No 60
>COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]
Probab=28.06 E-value=43 Score=23.69 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=24.8
Q ss_pred CCCCeeeec---CCCccCCCCCCCceeeccCCCC
Q 032754 71 SKPPKCKFP---QGFFHPNVYPSGTVCLSILNED 101 (134)
Q Consensus 71 ~~pP~v~f~---t~i~HPnV~~~G~vcl~~l~~~ 101 (134)
+.||.|.+. .+--++|+.++|..|+++|..+
T Consensus 44 ~~PP~v~v~v~~~~~t~~~i~~~~~F~vNvl~~~ 77 (176)
T COG1853 44 LEPPLVLVCVNKSSDTWPNIEETGEFVVNVLSED 77 (176)
T ss_pred CCCCEEEEEecCCcchhhhhhhcCEEEEEeCCHH
Confidence 458887776 3456899999999999999873
No 61
>TIGR02296 HpaC 4-hydroxyphenylacetate 3-monooxygenase, reductase component. These reductases catalyze the reduction of free flavins by NADPH. The flavin is then utilized by the large subunit of the monooxygenase.
Probab=28.04 E-value=28 Score=24.27 Aligned_cols=31 Identities=19% Similarity=0.541 Sum_probs=25.3
Q ss_pred CCCCeeeec---CCCccCCCCCCCceeeccCCCC
Q 032754 71 SKPPKCKFP---QGFFHPNVYPSGTVCLSILNED 101 (134)
Q Consensus 71 ~~pP~v~f~---t~i~HPnV~~~G~vcl~~l~~~ 101 (134)
.+||.|-+. ..--|+.|.++|+.|+++|..+
T Consensus 36 ~~PP~v~v~l~~~s~t~~~i~~~g~F~VnvL~~~ 69 (154)
T TIGR02296 36 DTPPTVMVCINRNSAMNPIFQENGKLCINVLAHE 69 (154)
T ss_pred cCCCEEEEEECCCCchhHHHHhCCeEEEEECcHH
Confidence 569998776 3457999999999999999863
No 62
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=28.00 E-value=81 Score=24.61 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeeeec
Q 032754 56 GGYFPLTLYFSEDYP------------------SKPPKCKFP 79 (134)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 79 (134)
.|.|.|+=..|.-|| .+||.|.|.
T Consensus 180 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 180 EGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 488999999999997 678888776
No 63
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=27.09 E-value=2.3e+02 Score=21.10 Aligned_cols=71 Identities=24% Similarity=0.382 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCC----------------
Q 032754 5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED---------------- 68 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~---------------- 68 (134)
..+..||...++++++-. .. ...-|.+.+....+.-| || |.+.++|.++
T Consensus 8 ~s~~eR~~e~~~~~k~~L---------~~----a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~~Vtm~sd~~~~~~~~ 72 (235)
T PF14135_consen 8 KSPAERINEALAEYKKIL---------TS----APNGWKLEYYPKTDQSY-GG-YTFLMKFDDDGKVTMASDFDSASTPS 72 (235)
T ss_pred CCHHHHHHHHHHHHHHHH---------hc----CCCceEEEEECCCCccC-Cc-EEEEEEECCCCeEEEEEccCCCCcee
Confidence 457788888777776522 11 22337777663333334 44 6666666533
Q ss_pred ---CCC---CCCeeeecC--CCccCCCCCC
Q 032754 69 ---YPS---KPPKCKFPQ--GFFHPNVYPS 90 (134)
Q Consensus 69 ---YP~---~pP~v~f~t--~i~HPnV~~~ 90 (134)
|-. .-|.+.|.| ++.|--.+++
T Consensus 73 tS~Y~~~~~~gp~LsFdTyN~~iH~~s~p~ 102 (235)
T PF14135_consen 73 TSSYRLKQDQGPVLSFDTYNEYIHYFSDPS 102 (235)
T ss_pred eEEEEEecCCceEEEEEeCCceEEEccCCC
Confidence 222 237788886 3677555443
No 64
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=26.46 E-value=1.2e+02 Score=20.98 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=19.0
Q ss_pred CcceEEEEEcCCCCCCCC-CCEEEEEEEc
Q 032754 38 NLMIWECIIPGKTGTDWE-GGYFPLTLYF 65 (134)
Q Consensus 38 ~~~~w~~~i~gp~~t~y~-gg~f~~~i~f 65 (134)
|...|.|++.|++||+.. ...|-+.+.|
T Consensus 46 d~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 46 DPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCcceEEEEECCCCcceeccccchheeeH
Confidence 667789999999988773 3444444444
No 65
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=26.22 E-value=1.6e+02 Score=23.44 Aligned_cols=47 Identities=23% Similarity=0.536 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCC-CCEEEEEEEcC-----CCCCCCCCeeeecCCCccCCCCCC
Q 032754 43 ECIIPGKTGTDWE-GGYFPLTLYFS-----EDYPSKPPKCKFPQGFFHPNVYPS 90 (134)
Q Consensus 43 ~~~i~gp~~t~y~-gg~f~~~i~fp-----~~YP~~pP~v~f~t~i~HPnV~~~ 90 (134)
++.+-|.+- -|+ |.+.-+...|- ++=+...|.|.|.-.+|||||-+.
T Consensus 274 ~l~Vg~E~q-~w~~g~~ll~ddsf~ha~~~dgs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 274 ELVVGGEPQ-CWAEGKCLLYDDSFLHALQHDGSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred eEEEcCccc-cccccceeEeechhhcccccCCCcccCceEEEEEeccCcccccc
Confidence 344444333 353 44444555553 444556799999999999999543
No 66
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=25.99 E-value=3.2e+02 Score=23.87 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCC
Q 032754 9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS 71 (134)
Q Consensus 9 kRl~~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~ 71 (134)
.-|++|++.|.. -+.|.+....-++|--...|.|. -+.-| -+++.+|.+||.
T Consensus 622 ~vlqgElarLD~----kF~v~ld~~~~~nN~I~liCkld-dk~lP------Pl~lsVP~~YPa 673 (742)
T KOG4274|consen 622 EVLQGELARLDA----KFEVDLDHQRHDNNHIILICKLD-DKQLP------PLRLSVPTTYPA 673 (742)
T ss_pred HHHHHHHHhhcc----ceeecCCcccccCCeeEEEEEec-CCCCC------Ceeeeccccccc
Confidence 447788887743 34444433211124333344444 22222 378899999996
No 67
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=25.69 E-value=95 Score=24.13 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=20.5
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeeeec
Q 032754 56 GGYFPLTLYFSEDYP------------------SKPPKCKFP 79 (134)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 79 (134)
.|.|.|+=..|.-|| .+||.|.|.
T Consensus 172 ~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 172 DGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 588999999999999 478888776
No 68
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=24.19 E-value=84 Score=20.67 Aligned_cols=21 Identities=43% Similarity=0.866 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCCCCCCCCEEEEE
Q 032754 40 MIWECIIPGKTGTDWEGGYFPLT 62 (134)
Q Consensus 40 ~~w~~~i~gp~~t~y~gg~f~~~ 62 (134)
.+|.|.+-|.+ .|+|-.|.|.
T Consensus 1 ~kWkC~iCg~~--I~~gqlFTF~ 21 (101)
T PF09943_consen 1 KKWKCYICGKP--IYEGQLFTFT 21 (101)
T ss_pred CceEEEecCCe--eeecceEEEe
Confidence 36999999744 8999999873
No 69
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=24.01 E-value=1.1e+02 Score=23.88 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.8
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeeeec
Q 032754 56 GGYFPLTLYFSEDYP------------------SKPPKCKFP 79 (134)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 79 (134)
.|.|.|+=..|..|| .+||.|.|.
T Consensus 184 dG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 184 EGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 588999999998887 578888776
No 70
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=24.00 E-value=1.1e+02 Score=23.91 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=19.9
Q ss_pred CCEEEEEEEcCCCCC------------------CCCCeeeec
Q 032754 56 GGYFPLTLYFSEDYP------------------SKPPKCKFP 79 (134)
Q Consensus 56 gg~f~~~i~fp~~YP------------------~~pP~v~f~ 79 (134)
.|.|.|+=..|.-|| .+||.|.|.
T Consensus 176 ~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 176 DGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 488999999999996 567887776
No 71
>TIGR03615 RutF pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.
Probab=23.52 E-value=39 Score=23.59 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEcCCCCCCCCCeeeec---CCCccCCCCC
Q 032754 13 EERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP---QGFFHPNVYP 89 (134)
Q Consensus 13 ~El~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~---t~i~HPnV~~ 89 (134)
.++++.+..-+.|+.+.....+ +.+ .|- .+.-..+ --.+||.+.+. +..-|+.|.+
T Consensus 4 ~~fr~am~~~~~gV~vVT~~~~----------------~~~-~g~--tvss~~s--vS~~PP~v~v~l~~~s~t~~~i~~ 62 (156)
T TIGR03615 4 QAFRDAMSRLGAAVNIITTDGP----------------AGR-AGF--TASAVCS--VTDTPPTLLVCLNRSASAYPAFKQ 62 (156)
T ss_pred HHHHHHHhccCCCeEEEEeecC----------------CCc-eeE--EEEeEee--ccCCCCEEEEEeCCCcchhHHHHh
Confidence 4778888888888876554321 111 111 1111111 23579998877 3457899999
Q ss_pred CCceeeccCCCC
Q 032754 90 SGTVCLSILNED 101 (134)
Q Consensus 90 ~G~vcl~~l~~~ 101 (134)
+|..++++|..+
T Consensus 63 s~~F~VnvL~~~ 74 (156)
T TIGR03615 63 NGTLCVNTLAAG 74 (156)
T ss_pred CCeEEEEECcHH
Confidence 999999999874
No 72
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=22.74 E-value=1.2e+02 Score=22.70 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=20.4
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeeeec
Q 032754 56 GGYFPLTLYFSEDYPS-------KPPKCKFP 79 (134)
Q Consensus 56 gg~f~~~i~fp~~YP~-------~pP~v~f~ 79 (134)
.|.|.|+=..|.-||. +||.|.|.
T Consensus 122 ~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 122 DGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999974 89998885
No 73
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=22.45 E-value=1.3e+02 Score=16.34 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHc
Q 032754 5 GIARGRLTEERKAWRKN 21 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~~ 21 (134)
+.+.|.|..|+..+.++
T Consensus 26 ~~alkELIeELvNITqn 42 (43)
T PF03487_consen 26 STALKELIEELVNITQN 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHhhccC
Confidence 56889999999988775
No 74
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=22.07 E-value=89 Score=26.89 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=23.2
Q ss_pred CCCCCCEEEEEEEcCCCCCC---CCCeeeecCC
Q 032754 52 TDWEGGYFPLTLYFSEDYPS---KPPKCKFPQG 81 (134)
Q Consensus 52 t~y~gg~f~~~i~fp~~YP~---~pP~v~f~t~ 81 (134)
+||.=|.|.+ +.+|+.||+ +-|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 5777788876 567999996 5799999985
No 75
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=22.01 E-value=1.3e+02 Score=22.58 Aligned_cols=24 Identities=25% Similarity=0.616 Sum_probs=20.5
Q ss_pred CCEEEEEEEcCCCCCC-------CCCeeeec
Q 032754 56 GGYFPLTLYFSEDYPS-------KPPKCKFP 79 (134)
Q Consensus 56 gg~f~~~i~fp~~YP~-------~pP~v~f~ 79 (134)
.|.|.|+=..|--||. .||.|.|.
T Consensus 117 ~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 117 DGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 5889999999999975 89988874
No 76
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=21.72 E-value=1e+02 Score=17.83 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHc
Q 032754 6 IARGRLTEERKAWRKN 21 (134)
Q Consensus 6 ~~~kRl~~El~~l~~~ 21 (134)
...+|+++|+++++++
T Consensus 48 ~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567788888887764
No 77
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=21.51 E-value=77 Score=18.06 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHcCC
Q 032754 5 GIARGRLTEERKAWRKNHP 23 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~~~~ 23 (134)
..+..||..|+..+...+.
T Consensus 21 ~is~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 21 KISKERIREELEKILSSPN 39 (64)
T ss_dssp GS-HHHHHHHHHHHHTSTT
T ss_pred cCCHHHHHHHHHHHHcCCC
Confidence 4567899999999988654
No 78
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=21.47 E-value=1.4e+02 Score=22.85 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=20.0
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeeeec
Q 032754 55 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 79 (134)
Q Consensus 55 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 79 (134)
+.|.|.|+=..|.-|| .+||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 3588999999999997 467887776
No 79
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=20.02 E-value=1.1e+02 Score=19.34 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 032754 5 GIARGRLTEERKAWRK 20 (134)
Q Consensus 5 ~~~~kRl~~El~~l~~ 20 (134)
+.+.+||.+|.....+
T Consensus 6 t~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 6 TGVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4688999999886554
Done!