Query         032755
Match_columns 134
No_of_seqs    181 out of 1080
Neff          5.3 
Searched_HMMs 29240
Date          Mon Mar 25 08:35:43 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032755hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2zzt_A Putative uncharacterize  99.7 3.8E-16 1.3E-20  110.3  10.1   66    2-67     22-87  (107)
  2 3byp_A CZRB protein; membrane   99.7 8.4E-16 2.9E-20  104.8  10.6   63    3-66     25-87  (94)
  3 3j1z_P YIIP, cation efflux fam  99.5 7.9E-15 2.7E-19  119.5   7.1   69    2-71    227-295 (306)
  4 3h90_A Ferrous-iron efflux pum  99.5 9.7E-14 3.3E-18  111.2  10.7   65    2-67    218-282 (283)
  5 1ghh_A DINI, DNA-damage-induci  60.0      17 0.00057   24.2   4.8   40   22-61      3-43  (81)
  6 3ju0_A Phage integrase; four s  50.0      40  0.0014   23.0   5.6   29   22-50     49-77  (108)
  7 2ns6_A Mobilization protein A;  44.7      58   0.002   24.3   6.2   47   17-63     67-113 (185)
  8 3jtz_A Integrase; four strande  41.8      63  0.0021   21.1   5.4   29   22-50     49-77  (88)
  9 3lno_A Putative uncharacterize  41.6      47  0.0016   22.2   4.8   43   18-63     44-86  (108)
 10 1mli_A Muconolactone isomerase  40.9      54  0.0019   22.4   5.0   49   19-69      2-50  (96)
 11 1dhn_A DHNA, 7,8-dihydroneopte  39.6      46  0.0016   22.7   4.6   50   15-64     24-100 (121)
 12 1ib8_A Conserved protein SP14.  38.0      72  0.0025   23.2   5.7   43    7-49     27-69  (164)
 13 1sql_A Dihydroneopterin aldola  36.4      93  0.0032   22.2   6.0   59    6-64     24-119 (146)
 14 2x4k_A 4-oxalocrotonate tautom  31.8      72  0.0025   18.0   4.3   42   24-66      6-49  (63)
 15 3cq1_A Putative uncharacterize  30.3      68  0.0023   21.1   4.1   49    8-62     33-81  (103)
 16 2atz_A H. pylori predicted cod  28.9      60   0.002   24.6   3.9   48    3-54     97-144 (180)
 17 1njh_A Protein YOJF; structura  28.6      41  0.0014   24.0   2.8   33   42-76     10-42  (119)
 18 2r4f_A 3-hydroxy-3-methylgluta  25.8 2.3E+02  0.0079   24.2   7.5   49    7-55    196-244 (441)
 19 4dx5_A Acriflavine resistance   25.4 1.6E+02  0.0056   26.9   6.9   43   20-62    570-613 (1057)
 20 3ne5_A Cation efflux system pr  24.4 2.6E+02   0.009   25.5   8.1   42   22-64    577-618 (1054)
 21 2kwa_A Kinase A inhibitor; bac  24.2 1.5E+02  0.0052   19.2   5.4   52   11-66      7-66  (101)
 22 1uwd_A Hypothetical protein TM  23.3 1.1E+02  0.0036   20.1   4.0   50    8-62     33-82  (103)
 23 2cg8_A Dihydroneopterin aldola  23.2      73  0.0025   25.1   3.7   49   16-64     24-99  (270)
 24 2v50_A Multidrug resistance pr  22.7 2.1E+02  0.0073   26.2   7.1   41   21-62    571-613 (1052)
 25 3mb2_A 4-oxalocrotonate tautom  22.6 1.3E+02  0.0046   18.0   4.3   42   25-66      5-47  (72)
 26 1th5_A NIFU1; iron-sulfur clus  22.3      76  0.0026   20.4   3.0   21   39-59     51-71  (74)
 27 2cu9_A Spcia1, histone chapero  22.0      39  0.0013   25.3   1.7   23  111-134    90-112 (161)
 28 2lfp_A Bacteriophage SPP1 comp  21.6 1.6E+02  0.0054   20.1   4.9   32   17-50     64-95  (139)
 29 1z9w_A DHNA, dihydroneopterin   20.2 2.2E+02  0.0076   19.6   8.5   49   14-63     23-98  (133)

No 1  
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.67  E-value=3.8e-16  Score=110.27  Aligned_cols=66  Identities=29%  Similarity=0.477  Sum_probs=62.4

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      +|||.+||+||+|++|+.+++++||.|+++||+.+||+|+++|++.|++.||.+.+++||+||...
T Consensus        22 ~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtIhvEp~~~   87 (107)
T 2zzt_A           22 FPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPLGN   87 (107)
T ss_dssp             CSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEETTC
T ss_pred             CCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEEecCCC
Confidence            699999999999999999999999999999999999999999999999999988899999999764


No 2  
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.66  E-value=8.4e-16  Score=104.80  Aligned_cols=63  Identities=27%  Similarity=0.486  Sum_probs=60.5

Q ss_pred             CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCC
Q 032755            3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY   66 (134)
Q Consensus         3 pgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~   66 (134)
                      |||.+||+||+|++|+.+++++||.|++++|+.++|+|+++|++.|+++||.+ +++||+||..
T Consensus        25 ~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~vtIh~ep~~   87 (94)
T 3byp_A           25 GRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPEG   87 (94)
T ss_dssp             TTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EEEEEEEECC
T ss_pred             CCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EEEEEeCCCC
Confidence            89999999999999999999999999999999999999999999999999975 9999999954


No 3  
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=99.54  E-value=7.9e-15  Score=119.52  Aligned_cols=69  Identities=26%  Similarity=0.495  Sum_probs=65.0

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQFSP   71 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~~~~~   71 (134)
                      +|||.++|++|+|++|+.+++|+||+||+++|+.|+|+|++++|++|++++|. .+++||+||+..++.+
T Consensus       227 ~~~V~~vh~l~~~~~G~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~-~~v~IhveP~~~ePt~  295 (306)
T 3j1z_P          227 DPRVLGLHDLRTRQAGKTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED-AEVIIHQDPVQVEPTT  295 (306)
T ss_dssp             STTBCCCCCBCCEEETTEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT-CEEEECCEETTSCCCC
T ss_pred             CCCcceeeeEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC-CeEEEEeCCCCCCCCc
Confidence            68999999999999999999999999999999999999999999999999995 7999999999876554


No 4  
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=99.50  E-value=9.7e-14  Score=111.21  Aligned_cols=65  Identities=29%  Similarity=0.544  Sum_probs=62.3

Q ss_pred             CCCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCC
Q 032755            2 SLSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF   67 (134)
Q Consensus         2 vpgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~   67 (134)
                      +|||.++|++|+|+.|+.+++++|+.+|+++|++++|+|++++|+.|++++|. .+++||+||++.
T Consensus       218 ~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~  282 (283)
T 3h90_A          218 WPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV  282 (283)
T ss_dssp             SSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred             CCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence            68999999999999999999999999999999999999999999999999997 799999999864


No 5  
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=59.98  E-value=17  Score=24.22  Aligned_cols=40  Identities=15%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe-eEEEEE
Q 032755           22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV-SEVFIH   61 (134)
Q Consensus        22 VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V-~~VtIH   61 (134)
                      |++.+.=...|+-.....|..++.++|.+.||+. .+|.|.
T Consensus         3 VEi~~dK~~~lp~ga~~aL~~EL~kRl~~~fpd~~~~V~Vr   43 (81)
T 1ghh_A            3 IEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVR   43 (81)
T ss_dssp             EEEEEETTSCCCTTHHHHHHHHHHHHHHHHCSSSCCEEEEE
T ss_pred             EEEEEecCCCCChhHHHHHHHHHHHHHHhhCCCCCceEEEe
Confidence            3444433346777788999999999999999984 255553


No 6  
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=49.98  E-value=40  Score=23.04  Aligned_cols=29  Identities=14%  Similarity=0.117  Sum_probs=24.8

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 032755           22 LDVHIVVDPFSSVSAAHGVGENVRHQIHK   50 (134)
Q Consensus        22 VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~   50 (134)
                      -.+.|.--|.+|+++|-+.+.++...|.+
T Consensus        49 ~~~~LG~yp~~SLa~AR~~a~~~r~~l~~   77 (108)
T 3ju0_A           49 RLLALGVYPAVSLADARQRRDEAKKLLAA   77 (108)
T ss_dssp             EEEEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCCCCCCHHHHHHHHHHHHHHHHc
Confidence            34667778999999999999999998864


No 7  
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=44.73  E-value=58  Score=24.27  Aligned_cols=47  Identities=9%  Similarity=0.162  Sum_probs=40.9

Q ss_pred             CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032755           17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID   63 (134)
Q Consensus        17 G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHve   63 (134)
                      ...+.=++.|.+|.++|.++-.+++...-+..-...+.+.++-||-+
T Consensus        67 na~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~  113 (185)
T 2ns6_A           67 NGRLFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAG  113 (185)
T ss_dssp             TSCCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEE
T ss_pred             CCeEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcC
Confidence            55788899999999999999999999888887777777789999974


No 8  
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=41.76  E-value=63  Score=21.12  Aligned_cols=29  Identities=21%  Similarity=0.196  Sum_probs=25.1

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 032755           22 LDVHIVVDPFSSVSAAHGVGENVRHQIHK   50 (134)
Q Consensus        22 VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~   50 (134)
                      -.+.|.--|.+|+++|-+.++++...|.+
T Consensus        49 ~~~~LG~yp~~sL~~AR~~a~~~r~~l~~   77 (88)
T 3jtz_A           49 SRIALGAYPAISLSDARQQREGIRKMLAL   77 (88)
T ss_dssp             EEEEEEETTTSCHHHHHHHHHHHHHHHTC
T ss_pred             EEEEeECCCCCCHHHHHHHHHHHHHHHHc
Confidence            35678888999999999999999998864


No 9  
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=41.56  E-value=47  Score=22.24  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             CEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032755           18 SSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHID   63 (134)
Q Consensus        18 ~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHve   63 (134)
                      ..+.+++.+..+.- +  .+..|...++++|+...|++..|.|.+.
T Consensus        44 ~~V~V~ltlt~p~c-p--~~~~i~~~i~~al~~~l~Gv~~V~V~l~   86 (108)
T 3lno_A           44 NNAVITMTMTSIGC-P--MAGQIVSDVKKVLSTNVPEVNEIEVNVV   86 (108)
T ss_dssp             CCEEEEECCSCTTC-T--THHHHHHHHHHHHHHHCTTCCCEEEEEC
T ss_pred             CeEEEEEEECCCCC-c--HHHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence            45666666665553 3  4568999999999556888887776653


No 10 
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=40.86  E-value=54  Score=22.41  Aligned_cols=49  Identities=4%  Similarity=-0.004  Sum_probs=31.7

Q ss_pred             EEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEecCCCCC
Q 032755           19 SLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF   69 (134)
Q Consensus        19 ~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP~~~~~   69 (134)
                      .+.|++++.+|++|+.+++.++..+=++.-+ ++-. .-...|+--..+.+
T Consensus         2 lFlV~m~V~~P~~~~~~~~~~~~a~Eka~a~-eLq~-~G~~~~lWRv~G~y   50 (96)
T 1mli_A            2 LFHVKMTVKLPVDMDPAKATQLKADEKELAQ-RLQR-EGTWRHLWRIAGHY   50 (96)
T ss_pred             eEEEEEEeeCCCCCCHHHHHHHHHHHHHHHH-HHHh-CCeeEEEEEecCCc
Confidence            3679999999999999999999766433332 2222 22445554444443


No 11 
>1dhn_A DHNA, 7,8-dihydroneopterin aldolase; pterin binding, folate biosynthesis, antibiotic target, beta; 1.65A {Staphylococcus aureus} SCOP: d.96.1.3 PDB: 1rri_A* 1rrw_A* 1rry_A* 1rs2_A* 1rs4_A* 1rsd_A* 1rsi_A* 1u68_A* 2dhn_A* 2nm2_A* 2nm3_A*
Probab=39.63  E-value=46  Score=22.74  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             eeCCEEEEEEEEEECCC-----------CCHHHH----------------HHHHHHHHHHHHhhCCCeeEEEEEEec
Q 032755           15 RAGSSLYLDVHIVVDPF-----------SSVSAA----------------HGVGENVRHQIHKSHPEVSEVFIHIDP   64 (134)
Q Consensus        15 ~~G~~~~VDvhI~Vd~~-----------mSV~eA----------------H~I~~~IE~~I~~~~p~V~~VtIHveP   64 (134)
                      ..|+.+.+|+.+.+|..           ++-.+.                ..++++|-+.+.+.||.+..+.|.+.=
T Consensus        24 ~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~~~LiE~lA~~Ia~~~l~~~~~v~~v~V~v~K  100 (121)
T 1dhn_A           24 EIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITK  100 (121)
T ss_dssp             HHCEEEEEEEEEEECCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSCCSCHHHHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred             ccCCEEEEEEEEEEcchhccccCCccceeCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHCCCceEEEEEEEc
Confidence            34778999999998842           122221                245778888888899988888887753


No 12 
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=38.04  E-value=72  Score=23.21  Aligned_cols=43  Identities=9%  Similarity=0.111  Sum_probs=37.4

Q ss_pred             eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q 032755            7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIH   49 (134)
Q Consensus         7 ~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~   49 (134)
                      .+-++...+.|....+.+-|.=+..+|+.++.++++.|...|-
T Consensus        27 eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD   69 (164)
T 1ib8_A           27 ELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD   69 (164)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred             EEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            4567788888998888888888889999999999999998886


No 13 
>1sql_A Dihydroneopterin aldolase; tetrahydrofolate biosynthesis, aldolase classes, retroaldol reaction, purin binding, schiff base, lyase; HET: GUN; 2.20A {Arabidopsis thaliana} SCOP: d.96.1.3
Probab=36.38  E-value=93  Score=22.15  Aligned_cols=59  Identities=14%  Similarity=0.100  Sum_probs=40.3

Q ss_pred             eeeeeEEEE----------eeCCEEEEEEEEEECCC-----------CCHHHH----------------HHHHHHHHHHH
Q 032755            6 QGCHRLRGR----------RAGSSLYLDVHIVVDPF-----------SSVSAA----------------HGVGENVRHQI   48 (134)
Q Consensus         6 ~~VhdLR~R----------~~G~~~~VDvhI~Vd~~-----------mSV~eA----------------H~I~~~IE~~I   48 (134)
                      ..+.+|+..          ..|+.+.+|+.+.+|..           ++-.+.                ..++++|-+.|
T Consensus        24 I~I~~L~~~a~iGv~~~Er~~~Q~~~vdl~l~~d~~~A~~sDdl~~tvdY~~v~~~I~~~v~~~~f~LiE~lA~~Ia~~i  103 (146)
T 1sql_A           24 LILKGLKFYGFHGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLAKEIVEGSPRNLLETVAELIASKT  103 (146)
T ss_dssp             EEEEEEEEEECCCSSHHHHHHCEEEEEEEEEECCCHHHHHHCCGGGSCCHHHHHHHHHHHHTSSCCSCHHHHHHHHHHHH
T ss_pred             EEECCeEEEEEECCCHHHhccCCEEEEEEEEEEcchhcccccCchhccCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            345666655          34678999999998842           222222                24578888888


Q ss_pred             HhhCCCeeEEEEEEec
Q 032755           49 HKSHPEVSEVFIHIDP   64 (134)
Q Consensus        49 ~~~~p~V~~VtIHveP   64 (134)
                      .+.||.+..|.|.+.=
T Consensus       104 l~~fp~v~~v~V~V~K  119 (146)
T 1sql_A          104 LEKFHQINAVRVKLSK  119 (146)
T ss_dssp             HHHCTTCCEEEEEEEE
T ss_pred             HHHCCCceEEEEEEEC
Confidence            8889988888887753


No 14 
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=31.85  E-value=72  Score=18.00  Aligned_cols=42  Identities=12%  Similarity=0.118  Sum_probs=30.5

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHhh--CCCeeEEEEEEecCC
Q 032755           24 VHIVVDPFSSVSAAHGVGENVRHQIHKS--HPEVSEVFIHIDPAY   66 (134)
Q Consensus        24 vhI~Vd~~mSV~eAH~I~~~IE~~I~~~--~p~V~~VtIHveP~~   66 (134)
                      ++|.+.+..|-++-.++++.|-+.+.+.  .|. .++.|.+.+..
T Consensus         6 i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~-~~v~v~i~e~~   49 (63)
T 2x4k_A            6 VNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANR-QAIHVVIEEMK   49 (63)
T ss_dssp             EEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCG-GGCEEEEEEEC
T ss_pred             EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCc-ccEEEEEEEcC
Confidence            3455556678999999999999998875  342 57777776654


No 15 
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=30.34  E-value=68  Score=21.08  Aligned_cols=49  Identities=20%  Similarity=0.299  Sum_probs=31.2

Q ss_pred             eeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 032755            8 CHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI   62 (134)
Q Consensus         8 VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHv   62 (134)
                      |.++.+.  |..+.+++.+..+.- +  ....|.+.++++|+ .+|++..|.|.+
T Consensus        33 V~~v~v~--~~~V~v~l~lt~~~c-p--~~~~l~~~i~~al~-~l~gv~~V~V~l   81 (103)
T 3cq1_A           33 IYDLVVE--PPRAYVRMTLTTPGC-P--LHDSLGEAVRQALS-RLPGVEEVEVEV   81 (103)
T ss_dssp             EEEEEEE--TTEEEEEECCSSSSC-C--SSCHHHHHHHHHHH-TSTTCCEEEEEE
T ss_pred             eEEEEEE--CCEEEEEEEECCCCC-c--HHHHHHHHHHHHHH-hCCCceeEEEEE
Confidence            3444442  455555555544333 3  36788999999996 578888777665


No 16 
>2atz_A H. pylori predicted coding region HP0184; structural genomics, PSI, protein struc initiative, midwest center for structural genomics, MCSG; HET: DGT; 2.00A {Helicobacter pylori} SCOP: d.264.1.3
Probab=28.92  E-value=60  Score=24.64  Aligned_cols=48  Identities=13%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             CCceeeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC
Q 032755            3 LSLQGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPE   54 (134)
Q Consensus         3 pgV~~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~   54 (134)
                      .|..+.+.-+++.-|+ +++-+|   .+..++.||++++..+-..|..+.|.
T Consensus        97 eGfinftaY~tKtpgh-lhlyIh---kghttL~E~~ql~~~lS~kLa~klpk  144 (180)
T 2atz_A           97 EGFMNFTAYNTKTPGH-LHLYVH---KGHTELGEGERLVKTLSMKLAQGLPK  144 (180)
T ss_dssp             TTCCCEEEEECSSTTC-EEEEEC---CCSEEHHHHHHHHHHHHHHHHTTSCC
T ss_pred             hCcceeEeeccCCCCe-EEEEEe---cCCccHHHHHHHHHHHHHHHHhhCcc
Confidence            3556666655555555 333333   35679999999999999999999994


No 17 
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=28.59  E-value=41  Score=24.00  Aligned_cols=33  Identities=18%  Similarity=0.396  Sum_probs=20.0

Q ss_pred             HHHHHHHHhhCCCeeEEEEEEecCCCCCCCCcccc
Q 032755           42 ENVRHQIHKSHPEVSEVFIHIDPAYFQFSPSTMDQ   76 (134)
Q Consensus        42 ~~IE~~I~~~~p~V~~VtIHveP~~~~~~~~~~~~   76 (134)
                      +++++.|. .|-+ .+|.||+|-....+.+|..++
T Consensus        10 ~~VQ~~L~-~f~~-~~VYiHlETTnGAYA~H~d~~   42 (119)
T 1njh_A           10 EDVQASLE-RYAD-RPVYIHLETTTGSYSAHLNEK   42 (119)
T ss_dssp             HHHHHHHH-HTTT-SCEEEEEEEEECC--------
T ss_pred             HHHHHHHH-HhcC-CceEEEEEecCchhhhhcccc
Confidence            35777774 5776 799999999999888765544


No 18 
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=25.79  E-value=2.3e+02  Score=24.19  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=44.2

Q ss_pred             eeeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCe
Q 032755            7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV   55 (134)
Q Consensus         7 ~VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V   55 (134)
                      ++.+|..+-.|+.+++.+.+....-|=.--.-..++.+-+.|++.+|..
T Consensus       196 ~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~  244 (441)
T 2r4f_A          196 RLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEM  244 (441)
T ss_dssp             EECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCC
Confidence            5678888999999999999999999999999999999999999889864


No 19 
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=25.41  E-value=1.6e+02  Score=26.88  Aligned_cols=43  Identities=14%  Similarity=0.053  Sum_probs=35.0

Q ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHHHHHh-hCCCeeEEEEEE
Q 032755           20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHK-SHPEVSEVFIHI   62 (134)
Q Consensus        20 ~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~-~~p~V~~VtIHv   62 (134)
                      -.+.+.+..|++.++++..++.+++|+.+++ +.|+|.++...+
T Consensus       570 ~~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V~~v~s~~  613 (1057)
T 4dx5_A          570 GVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVN  613 (1057)
T ss_dssp             SEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred             CEEEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEe
Confidence            3567888999999999999999999999971 468887766544


No 20 
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=24.43  E-value=2.6e+02  Score=25.48  Aligned_cols=42  Identities=26%  Similarity=0.151  Sum_probs=34.6

Q ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEEec
Q 032755           22 LDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP   64 (134)
Q Consensus        22 VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHveP   64 (134)
                      +-+.+..+++.|+++..++.+++|+.|+ ..|+|.++.-.+-.
T Consensus       577 ~~v~~~~p~Gtsle~t~~~~~~ie~~l~-~~p~V~~v~s~~G~  618 (1054)
T 3ne5_A          577 LLYMPSTLPGISAAEAASMLQKTDKLIM-SVPEVARVFGKTGK  618 (1054)
T ss_dssp             EEECCBCCTTCCHHHHHHHHHHHHHHHH-TSTTEEEEEEEEEC
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEEEecC
Confidence            3456678899999999999999999996 57999888766543


No 21 
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis}
Probab=24.19  E-value=1.5e+02  Score=19.25  Aligned_cols=52  Identities=13%  Similarity=0.053  Sum_probs=29.5

Q ss_pred             EEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh--------hCCCeeEEEEEEecCC
Q 032755           11 LRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK--------SHPEVSEVFIHIDPAY   66 (134)
Q Consensus        11 LR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~--------~~p~V~~VtIHveP~~   66 (134)
                      ++++..|..-   +-|++.+.+++.-..++ ..+.+.|++        -.|....++|+++|..
T Consensus         7 ~~i~~~GD~a---llVefg~~id~~~~~~v-~al~~~L~~~~~~Gv~EiVPa~~SllV~ydp~~   66 (101)
T 2kwa_A            7 YQIEQLGDSA---MMIRFGEEINEQVNGIV-HAAAAYIEEQPFPGFIECIPAFTSLTVFYDMYE   66 (101)
T ss_dssp             CEEEECSSSE---EEEECCCSSCHHHHHHH-HHHHHHHHHSCCTTEEEEEECSSEEEEEECHHH
T ss_pred             eEEEEcCCcE---EEEEECCcCCHHHHHHH-HHHHHHHHccCCCCeEEeccCceEEEEEEcchH
Confidence            5778888853   22556777777553333 233444433        2333345678888764


No 22 
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=23.31  E-value=1.1e+02  Score=20.06  Aligned_cols=50  Identities=8%  Similarity=0.040  Sum_probs=31.8

Q ss_pred             eeeEEEEeeCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCeeEEEEEE
Q 032755            8 CHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHI   62 (134)
Q Consensus         8 VhdLR~R~~G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~V~~VtIHv   62 (134)
                      |.++.+.. |..+.+++.+..+.- +  .+..|.+.++++|+ .+|++..+.|.+
T Consensus        33 V~~v~v~~-~~~V~v~l~lt~~~c-p--~~~~l~~~i~~al~-~l~gv~~v~V~l   82 (103)
T 1uwd_A           33 VYDIQIDD-QNNVKVLMTMTTPMC-P--LAGMILSDAEEAIK-KIEGVNNVEVEL   82 (103)
T ss_dssp             CCCEEECT-TCEEEEEECCSSSCC-S--SHHHHHHHHHHHHH-TSSSCCEEEEEE
T ss_pred             eeEEEEcC-CCEEEEEEEECCCCC-c--HHHHHHHHHHHHHH-hCCCcceEEEEE
Confidence            34444421 145666666654443 3  47789999999996 578888777665


No 23 
>2cg8_A Dihydroneopterin aldolase 6-hydroxymethyl-7,8- dihydropterin synthase; lyase/transferase, folate biosynthesis, pyrophosphokinase, lyase; 2.9A {Streptococcus pneumoniae}
Probab=23.17  E-value=73  Score=25.06  Aligned_cols=49  Identities=14%  Similarity=0.164  Sum_probs=33.9

Q ss_pred             eCCEEEEEEEEEECCC-----------CCHH----------------HHHHHHHHHHHHHHhhCCCeeEEEEEEec
Q 032755           16 AGSSLYLDVHIVVDPF-----------SSVS----------------AAHGVGENVRHQIHKSHPEVSEVFIHIDP   64 (134)
Q Consensus        16 ~G~~~~VDvhI~Vd~~-----------mSV~----------------eAH~I~~~IE~~I~~~~p~V~~VtIHveP   64 (134)
                      .|+.+.+|+.+.++..           .+-.                -...++++|-+.+.+.+|.+..|.|.+.=
T Consensus        24 ~~Q~~~vdv~l~~d~~~a~~sDdl~~tvdY~~v~~~I~~~~~~~~f~LiE~lA~~Ia~~ll~~~~~v~~V~V~v~K   99 (270)
T 2cg8_A           24 LGQKFIVSAILSYDMTKAATDLDLTASVHYGELCQQWTTWFQETSEDLIETVAYKLVERTFESYPLVQEMKLELKK   99 (270)
T ss_dssp             HCEEEEEEEEEEECCHHHHC-------CCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred             cCcEEEEEEEEEEchhhccccCCccccccHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHhcCCceEEEEEEee
Confidence            4678999999988731           1111                12345677777888889989888888763


No 24 
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=22.73  E-value=2.1e+02  Score=26.17  Aligned_cols=41  Identities=24%  Similarity=0.243  Sum_probs=34.2

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC--eeEEEEEE
Q 032755           21 YLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPE--VSEVFIHI   62 (134)
Q Consensus        21 ~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~--V~~VtIHv   62 (134)
                      .+.+.+..+++.++++..+..+++|+.|++ .|+  +.++...+
T Consensus       571 ~~~v~~~~p~g~s~~~t~~~~~~ie~~l~~-~p~~~V~~v~s~~  613 (1052)
T 2v50_A          571 VLFAQVQTPPGSSAERTQVVVDSMREYLLE-KESSSVSSVFTVT  613 (1052)
T ss_dssp             EEEEEEECSTTCCHHHHHHHHHHHHHHHHH-HTTTTEEEEEEEE
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHHHHHHHHh-CCCceEEEEEEEe
Confidence            357788899999999999999999999976 588  77766543


No 25 
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=22.58  E-value=1.3e+02  Score=18.02  Aligned_cols=42  Identities=12%  Similarity=0.039  Sum_probs=30.2

Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHhhCCC-eeEEEEEEecCC
Q 032755           25 HIVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAY   66 (134)
Q Consensus        25 hI~Vd~~mSV~eAH~I~~~IE~~I~~~~p~-V~~VtIHveP~~   66 (134)
                      +|.+.+..|.++-.++.+.|-+.+.+.++- -.++.|.++...
T Consensus         5 ~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~   47 (72)
T 3mb2_A            5 RITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVP   47 (72)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEEC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcC
Confidence            444446789999999999999999775431 157777777654


No 26 
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=22.28  E-value=76  Score=20.38  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHhhCCCeeEEE
Q 032755           39 GVGENVRHQIHKSHPEVSEVF   59 (134)
Q Consensus        39 ~I~~~IE~~I~~~~p~V~~Vt   59 (134)
                      .+...||+.|++.+|++..|.
T Consensus        51 Tlk~gIe~~L~~~vpei~~V~   71 (74)
T 1th5_A           51 TVRIAVSKKLREKIPSIQIVQ   71 (74)
T ss_dssp             SHHHHHHHHHHHHCTTCSEEE
T ss_pred             HHHHHHHHHHHHHCCCCcEEE
Confidence            456789999999999987664


No 27 
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=21.96  E-value=39  Score=25.28  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             eeeccceeeeecceeEEEEeeeCC
Q 032755          111 VFFLFPVLFACSMKFKVYLWSIGY  134 (134)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~  134 (134)
                      .+.|--+|+.||.+-+ .+|.+||
T Consensus        90 ilGvTvillt~sY~~q-EFiRVGY  112 (161)
T 2cu9_A           90 VLGVTVILLSCAYEDN-EFVRVGY  112 (161)
T ss_dssp             GSEEEEEEEEEEETTE-EEEEEEE
T ss_pred             ceeeEEEEEEEEECCe-EEEEEEE
Confidence            6788889999998754 5678887


No 28 
>2lfp_A Bacteriophage SPP1 complete nucleotide sequence; viral protein; NMR {Bacillus phage SPP1}
Probab=21.65  E-value=1.6e+02  Score=20.08  Aligned_cols=32  Identities=16%  Similarity=0.308  Sum_probs=27.0

Q ss_pred             CCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHh
Q 032755           17 GSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHK   50 (134)
Q Consensus        17 G~~~~VDvhI~Vd~~mSV~eAH~I~~~IE~~I~~   50 (134)
                      |....+.+||.- . -...++.+|+..|++.|..
T Consensus        64 ~~~~~~~idvws-~-~~~~~a~~ia~ai~~aL~~   95 (139)
T 2lfp_A           64 GENITMDFHVWG-G-TTRAEAQDISSRVLEALTY   95 (139)
T ss_dssp             SSCEEEEEEEEC-C-SCHHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEEEEEEe-c-CCHHHHHHHHHHHHHHHhc
Confidence            567888999988 4 4789999999999999963


No 29 
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP: d.96.1.3
Probab=20.21  E-value=2.2e+02  Score=19.64  Aligned_cols=49  Identities=20%  Similarity=0.337  Sum_probs=33.7

Q ss_pred             EeeCCEEEEEEEEEECCCC-----------CHHHH----------------HHHHHHHHHHHHhhCCCeeEEEEEEe
Q 032755           14 RRAGSSLYLDVHIVVDPFS-----------SVSAA----------------HGVGENVRHQIHKSHPEVSEVFIHID   63 (134)
Q Consensus        14 R~~G~~~~VDvhI~Vd~~m-----------SV~eA----------------H~I~~~IE~~I~~~~p~V~~VtIHve   63 (134)
                      |..|+.+.+|+.+.+|...           +-.+.                ..++++|-+.|.+ ||.+..+.|.+.
T Consensus        23 r~~~Q~~~vdl~l~~d~~~a~~sDdl~~tvdY~~v~~~i~~~v~~~~~~LiE~lA~~Ia~~il~-~~~v~~v~V~v~   98 (133)
T 1z9w_A           23 RVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPRKLIETVGAEIADHVMD-DQRVHAVEVAVH   98 (133)
T ss_dssp             ---CCEEEEEEEEEECCCCGGGCSSHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH-STTEEEEEEEEE
T ss_pred             HccCCEEEEEEEEEEcchhcccccCchhccCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhc-CCCccEEEEEEE
Confidence            4568899999999998542           11111                2457788888888 998888888775


Done!