RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 032755
         (134 letters)



>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
           ion transport and metabolism].
          Length = 304

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 26/60 (43%), Positives = 41/60 (68%)

Query: 6   QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
           +G H LR R++GS +++DVHI VDP  S+  AH + + V  +I K  P+V++V IH++P 
Sbjct: 231 KGVHDLRTRKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPL 290


>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter.
           This model describes a broadly distributed family of
           transporters, a number of which have been shown to
           transport divalent cations of cobalt, cadmium and/or
           zinc. The family has six predicted transmembrane
           domains. Members of the family are variable in length
           because of variably sized inserts, often containing
           low-complexity sequence [Transport and binding proteins,
           Cations and iron carrying compounds].
          Length = 268

 Score = 60.3 bits (147), Expect = 7e-12
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 6   QGCHRLRGRRAGSS-LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
           +G H L   R G   L+LDVH+VVDP   +  AH +   +  +I K HP +  V I ++P
Sbjct: 208 KGVHDLHIWRIGPGKLFLDVHVVVDPDLDLKQAHDIALEIEREILKRHPGIEHVTIQVEP 267

Query: 65  A 65
            
Sbjct: 268 C 268


>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family.  Members of this
           family are integral membrane proteins, that are found to
           increase tolerance to divalent metal ions such as
           cadmium, zinc, and cobalt. These proteins are thought to
           be efflux pumps that remove these ions from cells.
          Length = 273

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 20/60 (33%), Positives = 36/60 (60%)

Query: 7   GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAY 66
           G H LR  ++G   ++D+HI VDP  +V  AH + + +   + +  P +++V IH++PA 
Sbjct: 211 GVHDLRVWKSGPKYFVDIHIEVDPDLTVEEAHEIADEIERALKEKFPGIADVTIHVEPAP 270


>gnl|CDD|181919 PRK09509, fieF, ferrous iron efflux protein F; Reviewed.
          Length = 299

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 6   QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDP 64
            G H LR R++G + ++ +H+ ++    +  AH + + V   + +  P  S+V IH DP
Sbjct: 229 SGAHDLRTRQSGPTRFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPG-SDVIIHQDP 286


>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase;
          Provisional.
          Length = 445

 Score = 28.9 bits (65), Expect = 0.76
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 16/51 (31%)

Query: 28 VDPFSSVSAAHGVGENVRHQIHKSHPEVSEV-------FIHIDPAYFQFSP 71
          +D  +S S+     +NV H    + P V E        FIH  PAY    P
Sbjct: 45 IDLLASASS-----QNVGH----APPRVVEAIKAQADKFIHYTPAYMYHEP 86


>gnl|CDD|204090 pfam08903, DUF1846, Domain of unknown function (DUF1846).  This
           family of proteins are functionally uncharacterized.
           Some members of the family are annotated as
           ATP-dependent peptidases. However, we can find no
           support for this annotation.
          Length = 490

 Score = 27.2 bits (61), Expect = 2.8
 Identities = 8/17 (47%), Positives = 14/17 (82%), Gaps = 1/17 (5%)

Query: 74  MDQLG-LEGCKAHSSNI 89
           +++L  L+GC+AHS+ I
Sbjct: 445 LEKLPELKGCEAHSTVI 461


>gnl|CDD|184220 PRK13663, PRK13663, hypothetical protein; Provisional.
          Length = 493

 Score = 27.2 bits (61), Expect = 3.2
 Identities = 11/17 (64%), Positives = 15/17 (88%), Gaps = 1/17 (5%)

Query: 74  MDQLG-LEGCKAHSSNI 89
           M+QLG L+GC+AHS+ I
Sbjct: 447 MEQLGNLKGCEAHSTVI 463


>gnl|CDD|239388 cd03114, ArgK-like, The function of this protein family is
          unkown. The protein sequences are similar to the ArgK
          protein in E. coli. ArgK protein is a membrane ATPase
          which is required for transporting arginine, ornithine
          and lysine into the cells by the arginine and ornithine
          (AO system) and lysine, arginine and ornithine (LAO)
          transport systems.
          Length = 148

 Score = 26.5 bits (59), Expect = 3.7
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 7/46 (15%)

Query: 10 RLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEV 55
          R RG+R          + +DP S  S    +G+ +R + H S P V
Sbjct: 24 RARGKRVAV-------LAIDPSSPFSGGAILGDRIRMERHASDPGV 62


>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
           Provisional.
          Length = 374

 Score = 26.2 bits (58), Expect = 5.6
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)

Query: 50  KSHPEVSEVFIHIDPAYFQFSPSTM 74
           +S PE  ++ + ID AYF+FS +T+
Sbjct: 194 RSLPE--DILVVIDEAYFEFSQTTL 216


>gnl|CDD|236986 PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional.
          Length = 273

 Score = 25.9 bits (58), Expect = 6.7
 Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)

Query: 69  FSPSTMDQLGLEGCKAHSSNICVDDLDIDAVVY 101
           F     +   +    A     C+DDLDI+   Y
Sbjct: 124 FPLDEFEGQPI----AELPGECIDDLDIEIDNY 152


>gnl|CDD|183131 PRK11427, PRK11427, multidrug efflux system protein MdtO;
           Provisional.
          Length = 683

 Score = 26.0 bits (57), Expect = 9.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 102 NTLSTKFPEVFFLFPVLFACSMKFKVYLWSIGY 134
           N   TKF  + F+   +      F +Y WS GY
Sbjct: 69  NAFYTKFVAILFVVATVLEIGSLFLIYKWSYGY 101


>gnl|CDD|240213 cd05708, S1_Rrp5_repeat_sc12, S1_Rrp5_repeat_sc12: Rrp5 is a
          trans-acting factor important for biogenesis of both
          the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has
          two distinct regions, an N-terminal region containing
          tandemly repeated S1 RNA-binding domains (12 S1 repeats
          in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in
          Homo sapiens Rrp5) and a C-terminal region containing
          tetratricopeptide repeat (TPR) motifs thought to be
          involved in protein-protein interactions.  Mutational
          studies have shown that each region represents a
          specific functional domain. Deletions within the
          S1-containing region inhibit pre-rRNA processing at
          either site A3 or A2, whereas deletions within the TPR
          region confer an inability to support cleavage of
          A0-A2. This CD includes S. cerevisiae S1 repeat 12
          (sc12). Rrp5 is found in eukaryotes but not in
          prokaryotes or archaea.
          Length = 77

 Score = 24.6 bits (54), Expect = 9.9
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 29 DPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67
          +  +  S    VG+ VR ++ K   E   + + +  +YF
Sbjct: 39 NRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKASYF 77


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.139    0.434 

Gapped
Lambda     K      H
   0.267   0.0746    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,752,986
Number of extensions: 579008
Number of successful extensions: 707
Number of sequences better than 10.0: 1
Number of HSP's gapped: 706
Number of HSP's successfully gapped: 20
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.5 bits)