RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 032755
(134 letters)
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 81.3 bits (201), Expect = 2e-21
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 6 QGCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
HR+R RR G+ ++++ I VD SV AH + +R ++ K ++ +V IH++P
Sbjct: 26 HNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTIHVEPL 85
Query: 66 Y 66
Sbjct: 86 G 86
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 74.7 bits (184), Expect = 6e-19
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
H L+ RRAG +L+ H+VV + V AH + + + + ++ P + + IH++P
Sbjct: 29 EVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QATIHVEPE 86
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 69.5 bits (171), Expect = 2e-15
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 7 GCHRLRGRRAGSSLYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPA 65
G H LR R++G + ++ +H+ ++ + AH V + V I + P +V IH DP
Sbjct: 223 GAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGS-DVIIHQDPC 280
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 29.1 bits (66), Expect = 0.37
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 68 QFSPSTMDQLGLE-GCKAHSSNICVDDLDIDAVVYNTLSTKF 108
QF L LE G + + D+DA VY + + F
Sbjct: 236 QFGGQPQKILALEMGGNN--PLVVEEVADLDAAVYTIIQSAF 275
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC
transporter, periplasmic SO binding protein,
bicarbonate-binding protein; 1.35A {Synechocystis SP}
PDB: 2i48_A 2i4b_A 2i4c_A
Length = 429
Score = 28.9 bits (64), Expect = 0.46
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 15 RAGSSLYLDVHIVVDPFSSVSAAHGVGENVR--HQIHKSHPE----VSEVFIHIDPAYFQ 68
R G+ +D DP+ +G QI HPE + ++ +P +
Sbjct: 209 RNGT---MDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATK 265
>2g8y_A Malate/L-lactate dehydrogenases; NAD, E.coli, structural GENO PSI,
protein structure initiative, midwest center for struc
genomics, MCSG; HET: NAD 1PE; 2.15A {Escherichia coli}
Length = 385
Score = 28.9 bits (65), Expect = 0.51
Identities = 5/42 (11%), Positives = 9/42 (21%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67
+ + + Q I I+P F
Sbjct: 263 AMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELF 304
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M,
hyperthermostable, Pro-S hydrogen transfer; HET: NAD;
2.50A {Methanocaldococcus jannaschii} SCOP: c.122.1.1
PDB: 2x06_A*
Length = 344
Score = 28.1 bits (63), Expect = 0.82
Identities = 7/42 (16%), Positives = 18/42 (42%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEVFIHIDPAYF 67
+ ++ S++ A + + ++FI I+P +F
Sbjct: 231 LAIEMLSAIGGAEVGTKVKGTANPEERCTKGDLFIAINPEFF 272
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta
protein; 1.50A {Synechocystis SP}
Length = 417
Score = 27.7 bits (61), Expect = 1.1
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 22 LDVHIVVDPFSSVSAAHGVGENVR--HQIHKSHPE----VSEVFIHIDPAYFQ 68
++ V +P+ + GVG Q+ K HPE + ++ +P +
Sbjct: 205 MESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAK 257
>3uoe_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.31A {Sinorhizobium meliloti}
Length = 357
Score = 27.3 bits (61), Expect = 1.4
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 26 IVVDPFSSVSAAHGVGENVRHQIHKSHPE-VSEVFIHIDPAYFQFSPSTMDQL 77
+ ++ + A + +V + HP ++ I IDP+ S +
Sbjct: 254 LAIELLVAALAGSNLAPDVNGTLDDIHPANKGDLLILIDPSAGAGSIPALAAY 306
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein
structure initiative, PSI, joint center for structural
genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1
PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B*
Length = 350
Score = 26.9 bits (59), Expect = 2.1
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 38 HGVGENVRHQIHKSHPEVSEVFIHIDPAYFQF----SPSTMDQLGLEGCKAHSSNICVDD 93
G+ + ++ + V++H P+Y+ + + G +AH +++
Sbjct: 256 LREGQEAILKRYQVTGDRLRVYLHYLPSYYHLHVHFTALGFEAPGSGVERAHLLAQVIEN 315
Query: 94 LDIDAVVYNTLSTKF 108
L+ D Y + F
Sbjct: 316 LECDPKHYQQRTLTF 330
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure INI PSI-2; 2.51A {Corynebacterium
diphtheriae nctc 13129ORGANISM_TAXID}
Length = 507
Score = 27.0 bits (60), Expect = 2.4
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 74 MDQLG-LEGCKAHSSNI 89
+DQL L GC H++ I
Sbjct: 452 LDQLKNLRGCDVHTTTI 468
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center
for structural genomics of I diseases, csgid,
oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Length = 223
Score = 25.8 bits (56), Expect = 5.5
Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 15/97 (15%)
Query: 20 LYLDVHIVVDPFSSVSAAHGVGENVRHQIHKSHPEVSEV---------FIHIDPAYFQ-- 68
L ++ H VD SSVS V ++ + + ID
Sbjct: 8 LIINAHPKVDDTSSVSIK--VFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAW 65
Query: 69 FSPSTMDQLGLEGCKAH--SSNICVDDLDIDAVVYNT 103
+L E K S I + V
Sbjct: 66 EKQGNGQELTREEQKVTERMSEILQQFKSANTYVIVL 102
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 25.6 bits (57), Expect = 6.0
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 72 STMDQLGLE--GCKAHSSNICVDDLDIDAVVYNTLSTKF 108
+ M + LE G I +DD D+ +S F
Sbjct: 251 AKMIPVVLELGG---KDPAIVLDDADLKLTASQIVSGAF 286
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 25.2 bits (56), Expect = 7.4
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 15/34 (44%)
Query: 14 RRAGSSLYLDVHIVVDPFSSVSAA--------HG 39
S+L D +SSV+AA HG
Sbjct: 224 HVVASTL-------SDLYSSVAAAIAALKGPLHG 250
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.434
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,072,592
Number of extensions: 109898
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 28
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)