BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032758
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
Length = 133
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 43 RTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA---RQIDEY 99
TLV +G+ +++A++ DT + + +G G ++ + +A++ I +++++ +++ E
Sbjct: 51 ETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGEN 110
Query: 100 TRLIASI 106
R I I
Sbjct: 111 LRAITDI 117
>pdb|4EJO|A Chain A, Crystal Structure Of Padr Family Transcriptional Regulator
From Eggerthella Lenta Dsm 2243
pdb|4EJO|B Chain B, Crystal Structure Of Padr Family Transcriptional Regulator
From Eggerthella Lenta Dsm 2243
Length = 123
Score = 29.3 bits (64), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 91 KIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE 126
K R DE R++ ++AQ ++C+G+ +LL+ E
Sbjct: 81 KYYRTTDEGLRVLREVEAQWHVLCDGVGKLLETNGE 116
>pdb|3VST|A Chain A, The Complex Structure Of Xylc With Tris
pdb|3VST|B Chain B, The Complex Structure Of Xylc With Tris
pdb|3VST|C Chain C, The Complex Structure Of Xylc With Tris
pdb|3VST|D Chain D, The Complex Structure Of Xylc With Tris
pdb|3VSU|A Chain A, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|B Chain B, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|C Chain C, The Complex Structure Of Xylc With Xylobiose
pdb|3VSU|D Chain D, The Complex Structure Of Xylc With Xylobiose
pdb|3VSV|A Chain A, The Complex Structure Of Xylc With Xylose
pdb|3VSV|B Chain B, The Complex Structure Of Xylc With Xylose
pdb|3VSV|C Chain C, The Complex Structure Of Xylc With Xylose
pdb|3VSV|D Chain D, The Complex Structure Of Xylc With Xylose
Length = 638
Score = 28.1 bits (61), Expect = 1.6, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 16 VYLTLNA---GSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDT-QHIFVDI 68
VY+ NA G+ K +NL K +++ G EVY+ +PD ++I DI
Sbjct: 525 VYINKNAYFNGAEPFEKEKDNLVKKDFDPKLAIIDEGDEVYLSLQLPDEFENIVGDI 581
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 45 LVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKF 84
LV+LG E + VP + + +G+ F TW E +F
Sbjct: 69 LVDLGEEFAGRGSVPILEKVSKGLGIAFSNAKTWKEMRRF 108
>pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B
In Complex With Small Molecule Inhibitor
pdb|4DUH|B Chain B, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B
In Complex With Small Molecule Inhibitor
Length = 220
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 69 GLGFHVEFTWSEALKFISQREDKIARQIDEY 99
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 117 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 147
>pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
pdb|1EI1|B Chain B, Dimerization Of E. Coli Dna Gyrase B Provides A Structural
Mechanism For Activating The Atpase Catalytic Center
Length = 391
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 69 GLGFHVEFTWSEALKFISQREDKIARQIDEY 99
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 116 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 146
>pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With
Inhibitor
Length = 203
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 69 GLGFHVEFTWSEALKFISQREDKIARQIDEY 99
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 103 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 133
>pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|B Chain B, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|C Chain C, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity.
pdb|4HYP|D Chain D, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And
Topoisomerase Iv, Part I: Structure Guided Discovery And
Optimization Of Dual Targeting Agents With Potent,
Broad-spectrum Enzymatic Activity
Length = 215
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 69 GLGFHVEFTWSEALKFISQREDKIARQIDEY 99
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 104 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 134
>pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With
Clorobiocin
Length = 205
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 69 GLGFHVEFTWSEALKFISQREDKIARQIDEY 99
G+G V S+ L+ + QRE KI RQI E+
Sbjct: 103 GVGVSVVNALSQKLELVIQREGKIHRQIYEH 133
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 26.6 bits (57), Expect = 4.7, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 88 REDKIARQIDEYTRLIASIKAQIKLVCEGI 117
R D + ++I Y +A++KA I +C G+
Sbjct: 130 RPDLVVQEISNYGAGLAALKAGIPTICHGV 159
>pdb|2FC2|A Chain A, No-Heme Complex In A Bacterial Nitric Oxide Synthase. An
Fe(Iii)-No May Cause Nitrosation.
pdb|2FC2|B Chain B, No-Heme Complex In A Bacterial Nitric Oxide Synthase. An
Fe(Iii)-No May Cause Nitrosation
Length = 363
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 71 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 113
G H+E W+EA FI++ ++ ++ +E + SIK++I L
Sbjct: 1 GSHMEILWNEAKAFIAECYQELGKE-EEVKDRLDSIKSEIDLT 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,349,127
Number of Sequences: 62578
Number of extensions: 113903
Number of successful extensions: 291
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 13
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)