Query 032758
Match_columns 134
No_of_seqs 101 out of 569
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 08:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 100.0 4.1E-27 1.4E-31 170.2 15.4 107 14-122 24-130 (133)
2 2zdi_C Prefoldin subunit alpha 99.9 2.7E-26 9.3E-31 169.6 16.2 113 14-126 32-144 (151)
3 2zqm_A Prefoldin beta subunit 98.6 1.5E-06 5.1E-11 60.2 13.5 60 64-124 55-114 (117)
4 1fxk_A Prefoldin; archaeal pro 98.3 2.8E-05 9.7E-10 52.9 12.1 55 64-119 50-104 (107)
5 2zdi_C Prefoldin subunit alpha 96.7 0.004 1.4E-07 45.0 6.4 89 17-118 38-143 (151)
6 1fxk_C Protein (prefoldin); ar 95.4 0.048 1.7E-06 38.2 6.6 60 61-120 49-121 (133)
7 3aei_A Prefoldin beta subunit 88.7 1.8 6E-05 28.6 6.4 35 68-102 49-83 (99)
8 3trt_A Vimentin; cytoskeleton, 84.9 3.1 0.00011 26.2 6.0 48 74-121 22-69 (77)
9 3gpv_A Transcriptional regulat 84.1 3.9 0.00013 28.9 6.9 51 76-126 74-134 (148)
10 2yy0_A C-MYC-binding protein; 79.4 2.8 9.6E-05 25.2 4.0 42 80-121 2-46 (53)
11 2zqm_A Prefoldin beta subunit 79.2 5.8 0.0002 26.4 6.0 77 23-114 35-111 (117)
12 2z5i_A TM, general control pro 78.8 8.1 0.00028 23.0 6.4 38 82-119 7-44 (52)
13 1fxk_A Prefoldin; archaeal pro 77.3 5.8 0.0002 26.0 5.5 76 22-112 29-104 (107)
14 2yo3_A General control protein 76.3 8.6 0.00029 30.4 7.0 45 77-121 206-250 (268)
15 3gp4_A Transcriptional regulat 76.1 9.9 0.00034 26.6 6.8 41 77-117 78-118 (142)
16 3gp4_A Transcriptional regulat 74.8 15 0.00053 25.6 7.5 48 76-123 60-117 (142)
17 3swy_A Cyclic nucleotide-gated 74.5 11 0.00036 22.1 6.0 35 85-119 3-37 (46)
18 3gpv_A Transcriptional regulat 74.2 6.6 0.00022 27.7 5.4 44 76-119 91-134 (148)
19 3swf_A CGMP-gated cation chann 69.5 18 0.0006 23.3 6.0 35 85-119 5-39 (74)
20 1nkp_B MAX protein, MYC proto- 69.5 13 0.00043 23.6 5.5 39 78-120 42-80 (83)
21 1q08_A Zn(II)-responsive regul 69.0 19 0.00067 22.9 7.3 44 76-119 17-71 (99)
22 3efg_A Protein SLYX homolog; x 67.6 15 0.00052 23.5 5.5 38 82-119 23-60 (78)
23 1q08_A Zn(II)-responsive regul 66.8 19 0.00065 22.9 6.1 37 77-113 36-72 (99)
24 1gk4_A Vimentin; intermediate 65.1 24 0.00083 22.6 6.4 49 74-122 13-61 (84)
25 1r8e_A Multidrug-efflux transp 64.1 22 0.00076 26.6 6.8 45 76-120 64-112 (278)
26 1l8d_A DNA double-strand break 64.1 28 0.00095 22.9 6.7 43 80-122 3-45 (112)
27 3efg_A Protein SLYX homolog; x 63.9 26 0.00088 22.4 6.8 48 76-123 10-57 (78)
28 1jnm_A Proto-oncogene C-JUN; B 63.6 17 0.00058 21.9 5.0 37 87-123 22-58 (62)
29 1x8y_A Lamin A/C; structural p 63.5 27 0.00092 22.5 6.4 49 74-122 15-63 (86)
30 1t2k_D Cyclic-AMP-dependent tr 62.4 22 0.00076 21.2 5.4 35 88-122 23-57 (61)
31 1ci6_A Transcription factor AT 62.4 22 0.00075 21.6 5.4 35 89-123 25-59 (63)
32 1r8d_A Transcription activator 61.1 28 0.00095 22.8 6.2 42 76-117 60-105 (109)
33 3hh0_A Transcriptional regulat 61.1 39 0.0013 23.6 7.5 46 77-122 63-115 (146)
34 1lrz_A FEMA, factor essential 60.4 43 0.0015 27.0 8.3 49 72-120 239-300 (426)
35 3q0x_A Centriole protein; cent 60.2 47 0.0016 25.5 8.0 58 63-121 148-205 (228)
36 2pnv_A Small conductance calci 58.2 24 0.00082 20.2 4.7 25 85-109 14-38 (43)
37 1q06_A Transcriptional regulat 58.0 42 0.0014 22.9 7.1 42 76-117 58-109 (135)
38 1nkp_A C-MYC, MYC proto-oncoge 56.6 37 0.0013 21.9 6.5 41 78-122 47-87 (88)
39 2yny_A General control protein 56.2 31 0.0011 23.6 5.7 39 76-114 65-103 (106)
40 2vz4_A Tipal, HTH-type transcr 54.4 24 0.00081 23.2 4.9 40 76-115 59-102 (108)
41 2wt7_A Proto-oncogene protein 53.5 35 0.0012 20.6 5.4 34 89-122 25-58 (63)
42 3mov_A Lamin-B1; LMNB1, B-type 53.4 45 0.0016 22.0 6.4 49 73-121 23-71 (95)
43 1q06_A Transcriptional regulat 52.7 38 0.0013 23.2 5.9 36 77-112 76-111 (135)
44 3tnu_B Keratin, type II cytosk 52.2 49 0.0017 22.6 6.4 49 72-120 60-108 (129)
45 1a93_B MAX protein, coiled coi 52.1 28 0.00094 19.1 4.5 27 94-120 7-33 (34)
46 3qao_A LMO0526 protein, MERR-l 52.1 57 0.0019 24.8 7.3 48 76-123 61-112 (249)
47 3tnu_A Keratin, type I cytoske 52.0 49 0.0017 22.7 6.4 49 73-121 63-111 (131)
48 3htk_A Structural maintenance 51.8 34 0.0012 20.0 7.2 36 77-112 2-37 (60)
49 1r8e_A Multidrug-efflux transp 50.2 49 0.0017 24.6 6.7 39 78-116 77-115 (278)
50 3mud_A DNA repair protein XRCC 49.4 73 0.0025 23.5 7.2 58 62-119 105-167 (175)
51 2l5g_B Putative uncharacterize 47.7 38 0.0013 19.4 5.9 28 88-115 10-37 (42)
52 3nmd_A CGMP dependent protein 47.6 52 0.0018 20.9 7.0 45 78-122 21-68 (72)
53 3u06_A Protein claret segregat 47.5 55 0.0019 26.9 7.0 46 77-122 7-52 (412)
54 3lt7_A Adhesin YADA; adhesion, 46.6 40 0.0014 21.0 4.6 28 77-104 24-51 (64)
55 3ghg_A Fibrinogen alpha chain; 46.5 44 0.0015 28.9 6.3 40 78-117 115-154 (562)
56 1deq_A Fibrinogen (alpha chain 44.6 34 0.0012 28.4 5.2 51 70-120 50-100 (390)
57 3hh0_A Transcriptional regulat 44.0 64 0.0022 22.4 6.0 36 77-112 77-112 (146)
58 2aze_B Transcription factor E2 43.5 48 0.0017 22.2 5.1 36 86-121 5-40 (106)
59 2yo3_A General control protein 42.2 95 0.0032 24.4 7.2 48 76-123 212-259 (268)
60 3l4q_C Phosphatidylinositol 3- 42.0 1E+02 0.0034 22.6 7.0 43 78-120 94-136 (170)
61 3na7_A HP0958; flagellar bioge 41.0 88 0.003 23.6 6.8 37 81-117 98-134 (256)
62 4etp_A Kinesin-like protein KA 40.4 92 0.0032 25.4 7.3 43 79-121 9-51 (403)
63 2w6b_A RHO guanine nucleotide 40.4 60 0.002 19.6 6.8 50 71-120 1-50 (56)
64 1jcd_A Major outer membrane li 39.5 59 0.002 19.3 6.6 35 83-117 7-41 (52)
65 1r8d_A Transcription activator 39.4 25 0.00084 23.1 3.1 30 81-110 76-105 (109)
66 3q0x_A Centriole protein; cent 39.2 87 0.003 24.0 6.5 57 66-122 157-213 (228)
67 4etp_A Kinesin-like protein KA 39.1 13 0.00043 30.6 1.8 36 84-119 7-42 (403)
68 1l8d_A DNA double-strand break 39.0 79 0.0027 20.5 6.9 40 80-119 64-103 (112)
69 1nkp_B MAX protein, MYC proto- 38.6 71 0.0024 19.9 5.2 30 82-111 49-78 (83)
70 1lwu_C Fibrinogen gamma chain; 38.3 1E+02 0.0034 24.7 7.0 38 85-122 17-54 (323)
71 3pp5_A BRK1, protein brick1; t 38.1 48 0.0016 21.1 4.1 21 95-115 46-66 (73)
72 2efr_A General control protein 36.5 1.1E+02 0.0038 21.9 6.4 35 83-117 94-128 (155)
73 3m9b_A Proteasome-associated A 36.3 71 0.0024 24.9 5.6 42 82-123 56-97 (251)
74 3rrk_A V-type ATPase 116 kDa s 35.8 1.4E+02 0.0048 23.2 7.5 33 77-109 223-255 (357)
75 3na7_A HP0958; flagellar bioge 35.8 1.3E+02 0.0043 22.7 7.0 42 78-119 37-78 (256)
76 2qyw_A Vesicle transport throu 35.2 41 0.0014 22.3 3.6 13 75-87 55-67 (102)
77 1vcs_A Vesicle transport throu 35.0 46 0.0016 22.0 3.9 15 74-88 43-57 (102)
78 1hjb_A Ccaat/enhancer binding 34.4 95 0.0033 20.2 5.4 35 89-123 38-72 (87)
79 3azd_A Short alpha-tropomyosin 34.2 12 0.0004 20.7 0.6 27 82-108 6-32 (37)
80 1nlw_A MAD protein, MAX dimeri 34.0 74 0.0025 20.1 4.6 38 78-119 42-79 (80)
81 3uun_A Dystrophin; triple heli 33.4 90 0.0031 19.6 6.1 39 79-117 77-115 (119)
82 3viq_B Mating-type switching p 33.2 1E+02 0.0035 20.1 5.5 26 84-109 5-30 (85)
83 2dgc_A Protein (GCN4); basic d 33.0 82 0.0028 19.0 4.6 23 90-112 33-55 (63)
84 2zhg_A Redox-sensitive transcr 33.0 73 0.0025 22.3 4.9 11 76-86 68-78 (154)
85 2jee_A YIIU; FTSZ, septum, coi 33.0 1E+02 0.0034 20.0 7.0 11 88-98 28-38 (81)
86 2wg5_A General control protein 32.8 48 0.0017 22.1 3.7 23 88-110 8-30 (109)
87 1gd2_E Transcription factor PA 32.0 94 0.0032 19.4 5.6 33 85-117 34-66 (70)
88 2vz4_A Tipal, HTH-type transcr 32.0 25 0.00086 23.0 2.1 30 81-110 75-104 (108)
89 3t98_A Nuclear pore complex pr 31.9 79 0.0027 18.6 4.1 36 72-107 13-49 (51)
90 3mq9_A Bone marrow stromal ant 31.8 90 0.0031 25.2 5.9 22 88-109 444-465 (471)
91 2akf_A Coronin-1A; coiled coil 31.8 61 0.0021 17.1 3.8 27 92-118 4-30 (32)
92 2wq1_A General control protein 30.9 67 0.0023 17.3 4.4 21 89-109 2-22 (33)
93 1gk6_A Vimentin; intermediate 30.6 72 0.0025 19.0 3.9 17 88-104 8-24 (59)
94 2yko_A LINE-1 ORF1P; RNA-bindi 30.5 1.6E+02 0.0053 22.7 6.6 33 87-119 13-45 (233)
95 1rtm_1 Mannose-binding protein 30.4 65 0.0022 21.5 4.1 25 85-109 2-26 (149)
96 4ghu_A TNF receptor-associated 30.3 1.2E+02 0.004 22.0 5.8 35 91-125 4-38 (198)
97 2zhg_A Redox-sensitive transcr 30.2 1E+02 0.0034 21.6 5.2 33 77-109 87-119 (154)
98 3ghg_A Fibrinogen alpha chain; 30.1 1.4E+02 0.0046 25.9 6.7 39 83-121 113-151 (562)
99 3t98_B Nucleoporin NUP58/NUP45 29.7 1E+02 0.0035 20.2 4.8 31 82-112 7-37 (93)
100 1ci6_A Transcription factor AT 29.6 94 0.0032 18.7 6.2 37 82-118 25-61 (63)
101 3mq7_A Bone marrow stromal ant 29.3 1.4E+02 0.0049 20.6 7.2 21 96-116 73-93 (121)
102 3nmd_A CGMP dependent protein 29.2 65 0.0022 20.4 3.6 28 85-112 38-65 (72)
103 1txp_A HnRNP C, heterogeneous 29.1 66 0.0023 16.7 3.4 22 98-119 3-24 (28)
104 1ixr_A Holliday junction DNA h 28.9 68 0.0023 23.6 4.2 30 52-81 3-35 (191)
105 1lwu_A Fibrinogen alpha-1 chai 28.8 1.5E+02 0.005 20.6 5.8 39 82-120 24-62 (119)
106 2lw1_A ABC transporter ATP-bin 28.6 95 0.0033 19.7 4.5 18 85-102 27-44 (89)
107 1kd8_B GABH BLL, GCN4 acid bas 28.5 79 0.0027 17.4 4.8 26 88-113 2-27 (36)
108 2yny_A General control protein 28.1 1.4E+02 0.0047 20.3 5.3 42 64-108 63-104 (106)
109 1jnm_A Proto-oncogene C-JUN; B 28.1 98 0.0034 18.3 4.2 34 81-114 23-56 (62)
110 2nrj_A HBL B protein; enteroto 27.8 2.3E+02 0.0079 22.5 7.6 15 23-37 177-191 (346)
111 3a7p_A Autophagy protein 16; c 27.3 1.7E+02 0.006 21.0 7.2 45 77-121 72-123 (152)
112 1lwu_C Fibrinogen gamma chain; 26.7 1.5E+02 0.005 23.8 6.1 37 80-116 19-55 (323)
113 1zxa_A CGMP-dependent protein 26.6 1.2E+02 0.0041 18.9 4.9 38 79-116 17-54 (67)
114 2z1c_A Hydrogenase expression/ 26.2 90 0.0031 19.7 3.9 27 59-86 37-63 (75)
115 3m91_A Proteasome-associated A 25.9 1.1E+02 0.0036 18.0 6.2 39 83-121 12-50 (51)
116 1cuk_A RUVA protein; DNA repai 25.6 71 0.0024 23.7 3.8 28 52-79 3-33 (203)
117 1t2k_D Cyclic-AMP-dependent tr 25.5 1.1E+02 0.0037 18.0 6.5 34 82-115 24-57 (61)
118 3hhm_B NISH2 P85alpha; PI3KCA, 25.4 2.5E+02 0.0087 22.6 7.5 42 78-119 203-244 (373)
119 1gu4_A CAAT/enhancer binding p 25.2 1.4E+02 0.0046 19.0 6.3 37 88-124 37-73 (78)
120 3sjb_C Golgi to ER traffic pro 25.1 1.1E+02 0.0037 20.3 4.2 26 85-110 54-79 (93)
121 1fzc_C Fibrin; blood coagulati 24.8 42 0.0014 26.9 2.6 32 89-120 13-44 (319)
122 3c3f_A Alpha/beta peptide with 24.5 93 0.0032 16.9 3.8 24 88-111 2-25 (34)
123 3mq9_A Bone marrow stromal ant 24.5 2.1E+02 0.0072 22.9 6.8 18 80-97 397-414 (471)
124 3he5_B Synzip2; heterodimeric 24.5 1.1E+02 0.0037 17.6 6.5 13 83-95 6-18 (52)
125 2oqq_A Transcription factor HY 24.5 1E+02 0.0036 17.5 5.9 27 85-111 8-34 (42)
126 1nlw_A MAD protein, MAX dimeri 24.4 1.4E+02 0.0047 18.8 4.6 32 80-111 47-78 (80)
127 1tmo_A TMAO reductase, trimeth 24.1 72 0.0025 28.0 4.2 26 70-95 111-136 (829)
128 1deq_A Fibrinogen (alpha chain 24.1 2.1E+02 0.0073 23.6 6.7 39 79-117 119-157 (390)
129 1avy_A Fibritin, gpwac M; bact 23.9 1.4E+02 0.0049 18.8 6.3 36 88-123 9-44 (74)
130 3p8c_E Probable protein brick1 23.7 1.4E+02 0.0049 18.9 4.5 21 95-115 46-66 (75)
131 2aze_A Transcription factor DP 23.7 1.5E+02 0.0053 21.3 5.2 28 89-116 7-34 (155)
132 3hnw_A Uncharacterized protein 23.7 1.9E+02 0.0064 20.1 7.5 34 87-120 96-129 (138)
133 2yko_A LINE-1 ORF1P; RNA-bindi 23.4 1.8E+02 0.0063 22.3 5.9 45 78-123 11-55 (233)
134 3uul_A Utrophin; spectrin repe 23.4 1.4E+02 0.0049 18.6 6.3 39 80-118 78-116 (118)
135 1eu1_A Dimethyl sulfoxide redu 23.4 69 0.0023 27.9 3.9 27 69-95 77-103 (780)
136 2e7z_A Acetylene hydratase AHY 23.2 71 0.0024 27.5 3.9 25 70-94 72-96 (727)
137 2oie_A RS21-C6; helix, hydrola 23.1 21 0.00073 23.5 0.4 14 8-21 81-94 (111)
138 4dyl_A Tyrosine-protein kinase 22.9 1.9E+02 0.0066 23.2 6.3 41 80-120 302-342 (406)
139 2vpz_A Thiosulfate reductase; 22.7 73 0.0025 27.7 3.9 25 70-94 109-133 (765)
140 3rrk_A V-type ATPase 116 kDa s 22.7 2.1E+02 0.0071 22.2 6.3 33 89-121 101-136 (357)
141 3cve_A Homer protein homolog 1 22.5 1.5E+02 0.0052 18.6 5.9 33 85-117 19-51 (72)
142 2p4w_A Transcriptional regulat 22.5 2.3E+02 0.0077 20.6 7.4 43 77-119 119-161 (202)
143 1zme_C Proline utilization tra 22.3 99 0.0034 18.0 3.4 20 82-101 46-65 (70)
144 3c3g_A Alpha/beta peptide with 22.3 1E+02 0.0035 16.6 3.8 13 90-102 3-15 (33)
145 2wg5_A General control protein 22.2 1.1E+02 0.0039 20.3 4.0 28 96-123 9-36 (109)
146 3cvf_A Homer-3, homer protein 21.9 1.6E+02 0.0056 18.8 5.9 33 85-117 25-57 (79)
147 3e98_A GAF domain of unknown f 21.9 1.6E+02 0.0054 22.4 5.3 40 79-118 64-103 (252)
148 2zvf_A Alanyl-tRNA synthetase; 21.9 1.2E+02 0.0041 21.0 4.3 25 87-111 32-56 (171)
149 1uo4_A General control protein 21.8 91 0.0031 16.9 2.8 22 88-109 2-23 (34)
150 2xz3_A Maltose ABC transporter 21.8 1.7E+02 0.0058 23.4 5.8 41 75-115 355-407 (463)
151 3d3r_A Hydrogenase assembly ch 21.6 59 0.002 21.9 2.4 42 43-86 39-87 (103)
152 3l9f_A Putative uncharacterize 21.1 1.8E+02 0.0063 21.2 5.4 38 69-106 133-170 (204)
153 2ke4_A CDC42-interacting prote 20.9 1.9E+02 0.0064 19.0 5.3 24 76-99 11-34 (98)
154 1jy2_N Fibrinogen alpha chain; 20.8 80 0.0027 18.9 2.6 21 78-98 30-50 (53)
155 1hjb_A Ccaat/enhancer binding 20.8 1.8E+02 0.0061 18.8 5.3 36 84-119 40-75 (87)
156 2v71_A Nuclear distribution pr 20.8 2.6E+02 0.0089 20.7 6.6 39 75-113 44-82 (189)
157 4b4t_J 26S protease regulatory 20.7 1.5E+02 0.0051 24.4 5.2 43 80-122 18-67 (405)
158 3twe_A Alpha4H; unknown functi 20.7 96 0.0033 15.6 3.8 19 91-109 5-23 (27)
159 1lwu_B Fibrinogen beta chain; 20.7 1.9E+02 0.0066 23.0 5.7 46 78-123 11-57 (323)
160 2xdj_A Uncharacterized protein 20.6 1.8E+02 0.006 18.6 6.3 30 91-120 24-53 (83)
161 3m9b_A Proteasome-associated A 20.6 1.4E+02 0.0049 23.2 4.8 35 79-113 60-94 (251)
162 1dip_A Delta-sleep-inducing pe 20.3 1.1E+02 0.0038 19.6 3.4 24 80-103 15-38 (78)
163 4dzn_A Coiled-coil peptide CC- 20.3 1.1E+02 0.0037 16.1 4.4 22 90-111 5-26 (33)
164 3jtz_A Integrase; four strande 20.3 1.7E+02 0.006 18.5 4.7 26 67-92 50-75 (88)
165 1yke_B RNA polymerase II holoe 20.2 2.4E+02 0.0081 19.9 6.6 34 87-120 92-125 (151)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.95 E-value=4.1e-27 Score=170.19 Aligned_cols=107 Identities=16% Similarity=0.303 Sum_probs=101.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758 14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA 93 (134)
Q Consensus 14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~ 93 (134)
.-.++.++.+|.++.++|+.|++ .++.+++||+|+++|++|+|+|+++|+||||+|||||+|.++|++|+++|++.++
T Consensus 24 ~~~l~~~i~e~~~~~e~l~~l~~--~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~ 101 (133)
T 1fxk_C 24 MEAVRATISELEILEKTLSDIQG--KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELE 101 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc--CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHH
Confidence 45788999999999999999987 2588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 94 RQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
+.++++++++..++++++.+.+.++++++
T Consensus 102 ~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 102 STLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999764
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.94 E-value=2.7e-26 Score=169.57 Aligned_cols=113 Identities=22% Similarity=0.327 Sum_probs=103.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHH
Q 032758 14 YLVYLTLNAGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIA 93 (134)
Q Consensus 14 ~~~~~~~~~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~ 93 (134)
.-.++.|.+++.+++.+++.+.....++.+++||+|+++|++|+|+|+++|+||||+|||||+|.++|++|+++|++.++
T Consensus 32 ~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~ 111 (151)
T 2zdi_C 32 LELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYD 111 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHH
Confidence 44567778888888888888876432578999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 032758 94 RQIDEYTRLIASIKAQIKLVCEGICELLQLPAE 126 (134)
Q Consensus 94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~~~ 126 (134)
+.++++++.+..++++++.+...|+++++..++
T Consensus 112 ~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~ 144 (151)
T 2zdi_C 112 EAIKKTQGALAELEKRIGEVARKAQEVQQKQSM 144 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887555
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=98.63 E-value=1.5e-06 Score=60.24 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=53.9
Q ss_pred eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032758 64 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP 124 (134)
Q Consensus 64 VlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~ 124 (134)
|+..|| ++||+.|.++|...+++|++.++..++.+.+.+..++..+..+...++++.+-+
T Consensus 55 vy~~iG-~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~~ 114 (117)
T 2zqm_A 55 VYKTVG-TLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPP 114 (117)
T ss_dssp EEEEET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hHHHhh-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 444444 999999999999999999999999999999999999999999999999977653
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=98.25 E-value=2.8e-05 Score=52.94 Aligned_cols=55 Identities=9% Similarity=0.151 Sum_probs=49.2
Q ss_pred eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 64 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 64 VlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
|+..|| ++||+.|.++|...+++|++.++..++.+.+.+..++..+..+...+.+
T Consensus 50 vy~~iG-~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 50 VYKSSG-NILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp EEEEET-TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444 8999999999999999999999999999999999999999999888765
No 5
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.004 Score=45.03 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=69.9
Q ss_pred HHHHHhhHHHHHHHHHHhh-cCC----------------CCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHH
Q 032758 17 YLTLNAGSSDLRKNIENLE-KNS----------------VTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWS 79 (134)
Q Consensus 17 ~~~~~~ey~el~~~I~~L~-~~~----------------~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~ 79 (134)
-.....+|.++.++|+.++ ... ....+++|++|+|+|+.-.+.+.. .-++
T Consensus 38 a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~-------------~~l~ 104 (151)
T 2zdi_C 38 AKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAI-------------SFLE 104 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHH-------------HHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHH-------------HHHH
Confidence 4566788889999998887 331 124579999999999999888743 3467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 80 EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC 118 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ 118 (134)
.=+++++++++.+++.++.+++.+..+...+......++
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999988888887775543
No 6
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=95.39 E-value=0.048 Score=38.18 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCeeEEEecceeEEeecHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 61 TQHIFVDIGLGFHVEFTWSEAL-------------KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 61 ~~kVlV~lG~g~~VE~~~~eA~-------------~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
+.+++|++|+|.||.-.+.+.. .-++.=++.++++++.++..+..++..+..+...+..+
T Consensus 49 ~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~ 121 (133)
T 1fxk_C 49 GSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKL 121 (133)
T ss_dssp TCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665555432 22455555666666666666666666665555555544
No 7
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=88.68 E-value=1.8 Score=28.65 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=27.7
Q ss_pred ecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 68 IGLGFHVEFTWSEALKFISQREDKIARQIDEYTRL 102 (134)
Q Consensus 68 lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~ 102 (134)
.=++..||.+-|+|++++++---..+..++++.+.
T Consensus 49 af~dllveitkdeaiehier~rl~ykreie~l~~~ 83 (99)
T 3aei_A 49 AFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKR 83 (99)
T ss_dssp EETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999998777777777766655
No 8
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=84.95 E-value=3.1 Score=26.18 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=37.4
Q ss_pred EeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 74 VEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 74 VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
+.++..||...+..|++.++.....-...+...+..+..+...++.|+
T Consensus 22 a~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 22 AAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999888877777777777766666666543
No 9
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=84.10 E-value=3.9 Score=28.88 Aligned_cols=51 Identities=16% Similarity=0.200 Sum_probs=31.4
Q ss_pred ecHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 032758 76 FTWSEALKFIS----------QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLPAE 126 (134)
Q Consensus 76 ~~~~eA~~~l~----------kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~~~ 126 (134)
+|+++...+++ .+...|++.++.+.+++..++.....+...+...++....
T Consensus 74 ~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 74 MPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777777765 3456667777777777777777777777777766655443
No 10
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=79.44 E-value=2.8 Score=25.17 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 80 EALKFISQREDKI---ARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 80 eA~~~l~kri~~L---~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
+|.+|+++.+..- ....+.|+.+...+++++..+...++++.
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666766665421 23466666666666666666666666554
No 11
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=79.24 E-value=5.8 Score=26.38 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 23 GSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRL 102 (134)
Q Consensus 23 ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~ 102 (134)
+..++..+++.|.... ++..++.++| ++||.-.+.+ +...+++-.++++.+++.|+++++.+.+.
T Consensus 35 ~~~e~~~~~~eL~~l~-~d~~vy~~iG-~vfv~~~~~e-------------a~~~L~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 35 ELTEAKKALDEIESLP-DDAVVYKTVG-TLIVKTTKDK-------------AVAELKEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHTSC-TTCCEEEEET-TEEEEECHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCcHhHHHhh-HHHhhccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666543 4667999999 6777776665 44678999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 032758 103 IASIKAQIKLVC 114 (134)
Q Consensus 103 l~~ik~~i~~v~ 114 (134)
+.+++.++....
T Consensus 100 l~~lk~~l~~~~ 111 (117)
T 2zqm_A 100 LKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 12
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=78.76 E-value=8.1 Score=22.98 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
-+|.++.+..|++.++.|..++..-+.+...+.+.+.+
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 36788999999999999999998888888888888776
No 13
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=77.28 E-value=5.8 Score=25.97 Aligned_cols=76 Identities=16% Similarity=0.284 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHhhcCCCCCeeEEEecCCceeEEEEecCCCeeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 22 AGSSDLRKNIENLEKNSVTSLRTLVNLGSEVYMQADVPDTQHIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTR 101 (134)
Q Consensus 22 ~ey~el~~~I~~L~~~~~~~~eilVplG~~~yv~a~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~ 101 (134)
.+..++..+++.|.... ++..++.++| ++||.-.+.+ +.-.+++..++++.+++.|+++++.+++
T Consensus 29 ~~~~e~~~~~~EL~~l~-~d~~vy~~iG-~vfv~~~~~e-------------~~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 29 MQINETQKALEELSRAA-DDAEVYKSSG-NILIRVAKDE-------------LTEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHSC-TTCCEEEEET-TEEEEECHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCchHHHHHh-HHHHhccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666543 4567999998 6777776665 4467899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 032758 102 LIASIKAQIKL 112 (134)
Q Consensus 102 ~l~~ik~~i~~ 112 (134)
.+..++.++..
T Consensus 94 ~l~~lk~~l~~ 104 (107)
T 1fxk_A 94 KLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 14
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=76.27 E-value=8.6 Score=30.43 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
+..+|..|-+.|...|+.+++.+.+++.++.+.++.+.+.|..+.
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~ 250 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIE 250 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999998888888888887777765543
No 15
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=76.14 E-value=9.9 Score=26.61 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
+.++..+.+..+++.++++++.++..+..+...+......+
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666666666555555555555444433
No 16
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=74.82 E-value=15 Score=25.60 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=36.6
Q ss_pred ecHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 76 FTWSEALKFIS----------QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 76 ~~~~eA~~~l~----------kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
+|+++..++++ .+...|++.++.+.+++..++.....+...+...++.
T Consensus 60 ~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 60 LSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp CCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888875 4567778888888888888888888877777765543
No 17
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=74.52 E-value=11 Score=22.11 Aligned_cols=35 Identities=9% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
++.|++.|+..++.++...+++-+++...+..+.+
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKq 37 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQ 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999998888888877765
No 18
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=74.16 E-value=6.6 Score=27.68 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=34.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 76 FTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 76 ~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
.+.++..+.+..+++.++++++.+++.+..+...+......++.
T Consensus 91 ~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 91 STILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46788999999999999999999999999999998887776654
No 19
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=69.46 E-value=18 Score=23.26 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
++.|++.|+..++.++...+++-+++...+..|.|
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKq 39 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQ 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777766666655543
No 20
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=69.45 E-value=13 Score=23.64 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
+..|++| |..|....+.+..++..++.+...+...++++
T Consensus 42 L~~Ai~Y----I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 42 LDKATEY----IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556665 45667777777777777777777777766654
No 21
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=68.95 E-value=19 Score=22.86 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=23.5
Q ss_pred ecHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 76 FTWSEALKFISQ-----------REDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 76 ~~~~eA~~~l~k-----------ri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
+|+++-..+++- ....|+++++.+.+++.+++.....+...+..
T Consensus 17 fsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~ 71 (99)
T 1q08_A 17 FSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDA 71 (99)
T ss_dssp CCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555542 34455555555555555555555555555544
No 22
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=67.58 E-value=15 Score=23.50 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
..|.++-++.|+..+-.-++.+..++.+++.+.+.+..
T Consensus 23 lAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 23 LSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 23
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=66.83 E-value=19 Score=22.92 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=31.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 113 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v 113 (134)
+.++...++..++..++++++.++.....+...+...
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 72 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDAC 72 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999999888888776644
No 24
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=65.08 E-value=24 Score=22.55 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=35.7
Q ss_pred EeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 74 VEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 74 VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
.|.++.++..-....+..++..+..+...+.++++.+.......+.|-+
T Consensus 13 LE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 13 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888888888888888888877666555555443
No 25
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=64.14 E-value=22 Score=26.57 Aligned_cols=45 Identities=9% Similarity=-0.107 Sum_probs=23.8
Q ss_pred ecHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 76 FTWSEALKFIS----QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 76 ~~~~eA~~~l~----kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
+|+++..++++ ...+.|+++.+.+.+++..+++....+...++.+
T Consensus 64 ~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~ 112 (278)
T 1r8e_A 64 TPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRM 112 (278)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666553 2344555555555555555555555555544443
No 26
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=64.14 E-value=28 Score=22.87 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 80 EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
.+...++++++.+...+.++......++.++..+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456677788888888999988889999999888888887643
No 27
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.92 E-value=26 Score=22.40 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=38.8
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 76 FTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 76 ~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
.++++-+.-++-|+.+.+..++.|++.+..-..+|..+...++.|.+-
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777888888888889999999888888888888888777654
No 28
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=63.59 E-value=17 Score=21.93 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 87 kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
.++..|+...+.|..+-..++.++..+...+.+|.++
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777778888888887777776654
No 29
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=63.52 E-value=27 Score=22.51 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=38.4
Q ss_pred EeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 74 VEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 74 VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
.|-++.++..-....++.++..+..+...+.++++.+.......+.|-+
T Consensus 15 Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Lln 63 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888988888888888888766665555543
No 30
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=62.44 E-value=22 Score=21.25 Aligned_cols=35 Identities=11% Similarity=0.346 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 88 REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
++..|+...+.+..+-..++..+..+...+.+|.+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777777777666654
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.38 E-value=22 Score=21.62 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 89 EDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 89 i~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
.+.|....+.|...-..++.++..+...++.|.++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666677777777776666666543
No 32
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=61.12 E-value=28 Score=22.79 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=24.5
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 76 FTWSEALKFISQ----REDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 76 ~~~~eA~~~l~k----ri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
+|+++...+++. +.+.|+++++.+.+++..++..+..+...+
T Consensus 60 ~~l~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 60 FRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp CCHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777742 345556666666666555555555554433
No 33
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=61.10 E-value=39 Score=23.56 Aligned_cols=46 Identities=11% Similarity=-0.044 Sum_probs=25.9
Q ss_pred cHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 77 TWSEALKFIS-------QREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 77 ~~~eA~~~l~-------kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
|+++...+++ .+...|..+.+.+.+++..++..+..+...+..+..
T Consensus 63 sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 63 SLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp CHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555555552 344555556666666666666666666666655443
No 34
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=60.37 E-value=43 Score=27.05 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=36.3
Q ss_pred eEEeecHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Q 032758 72 FHVEFTWSEALKFISQREDKIARQIDEYT-------------RLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 72 ~~VE~~~~eA~~~l~kri~~L~~~~~~l~-------------~~l~~ik~~i~~v~~~i~ql 120 (134)
+.++.++++..+.++.+++.+++.++++. +++.++++++...+..+.+.
T Consensus 239 ~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 239 PLAYINFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999885 34455555555555555544
No 35
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=60.25 E-value=47 Score=25.48 Aligned_cols=58 Identities=9% Similarity=0.066 Sum_probs=41.0
Q ss_pred eeEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 63 HIFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 63 kVlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
|-+..+... |..-+-+.-+.++..|.+.++++...+++.+.+.+++.+.....+.+..
T Consensus 148 K~l~hLSL~-f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~ 205 (228)
T 3q0x_A 148 KQLPHITLA-FRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCR 205 (228)
T ss_dssp EEEEEEEEE-EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEE-eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 4566778888899999999988888888888877777766655555443
No 36
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=58.25 E-value=24 Score=20.23 Aligned_cols=25 Identities=8% Similarity=0.308 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~ 109 (134)
+..|-+.|++++..+..+++.+.+.
T Consensus 14 l~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 14 LNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444443
No 37
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=58.04 E-value=42 Score=22.95 Aligned_cols=42 Identities=12% Similarity=0.186 Sum_probs=23.8
Q ss_pred ecHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 76 FTWSEALKFISQ----------REDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 76 ~~~~eA~~~l~k----------ri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
+|++++.++++. ....+++.++.+.+++..++.....+...+
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 58 FNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777753 344555555555555555555555444444
No 38
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=56.58 E-value=37 Score=21.91 Aligned_cols=41 Identities=7% Similarity=0.030 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
+..|++|+ ..|......+..+...++.+-..+...+++|++
T Consensus 47 L~~A~~YI----~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 47 LKKATAYI----LSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666664 456666666666677777777777777777653
No 39
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=56.19 E-value=31 Score=23.57 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=34.1
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 76 FTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVC 114 (134)
Q Consensus 76 ~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~ 114 (134)
-+..+|..-++.++..+..++..+..++..++.++..+.
T Consensus 65 nnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 65 NNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999888888887654
No 40
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=54.40 E-value=24 Score=23.15 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=20.1
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 76 FTWSEALKFISQ----REDKIARQIDEYTRLIASIKAQIKLVCE 115 (134)
Q Consensus 76 ~~~~eA~~~l~k----ri~~L~~~~~~l~~~l~~ik~~i~~v~~ 115 (134)
+|++++.++++. +...|.++++.+.+++..++..+..+..
T Consensus 59 ~sl~~I~~~l~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 59 FPLDEVAALLDDPAADPRAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp CCHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677776643 2334444555555554444444444443
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.50 E-value=35 Score=20.61 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 89 EDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 89 i~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
+..|....+.|..+-..++..+..+...+.+|.+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666666666665555543
No 42
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=53.44 E-value=45 Score=21.97 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=36.0
Q ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 73 HVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 73 ~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
.+|.++.++..-+...+..++..+..+...+.++++.+..-....+.|.
T Consensus 23 ~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 23 ACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888887765554444443
No 43
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=52.70 E-value=38 Score=23.17 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKL 112 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~ 112 (134)
+.++..+.++.+++.+++++..++.....++.-+..
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (135)
T 1q06_A 76 HSADVKRRTLEKVAEIERHIEELQSMRDQLLALANA 111 (135)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888887777776653
No 44
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=52.19 E-value=49 Score=22.59 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=30.6
Q ss_pred eEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 72 FHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 72 ~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
-.+|.++.++..-....++.++..+..+...+.++++.+.......+.|
T Consensus 60 ~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 60 ANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666667677766666666665554444444
No 45
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=52.13 E-value=28 Score=19.08 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 94 RQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 94 ~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
......+++|++++.+-..+.+.++.|
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 344555666666666666666666543
No 46
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=52.09 E-value=57 Score=24.78 Aligned_cols=48 Identities=8% Similarity=0.004 Sum_probs=35.8
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 76 FTWSEALKFISQ----REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 76 ~~~~eA~~~l~k----ri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
+|+++...+++. +...|..+++.+.+.+..++..+..+...+..+..-
T Consensus 61 ~sL~eIk~~l~~~~~~~~~~L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~~~ 112 (249)
T 3qao_A 61 FPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGE 112 (249)
T ss_dssp CCHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 477777777763 566777788888888888888888888877776554
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.95 E-value=49 Score=22.68 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=31.2
Q ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 73 HVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 73 ~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
.+|.++.++..-....++.++..+..+...+.++++.+.......+.|-
T Consensus 63 sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 63 SLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666777777777777777666655554444443
No 48
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=51.84 E-value=34 Score=20.05 Aligned_cols=36 Identities=11% Similarity=0.163 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKL 112 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~ 112 (134)
|+.++..-++++....++........+...+.++..
T Consensus 2 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 37 (60)
T 3htk_A 2 PFANTKKTLENQVEELTEKCSLKTDEFLKAKEKINE 37 (60)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666555555444444444444444433
No 49
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=50.24 E-value=49 Score=24.60 Aligned_cols=39 Identities=21% Similarity=0.257 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEG 116 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~ 116 (134)
.++..+.+..+++.++++++.+++.+..++..+..+...
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 77 MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999988888766544
No 50
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=49.35 E-value=73 Score=23.53 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=40.9
Q ss_pred CeeEEEecceeEEeecHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 62 QHIFVDIGLGFHVEFTWS-----EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 62 ~kVlV~lG~g~~VE~~~~-----eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
+.|-..+|+=-.=+.+.. +-+.|..+.+..|++.++.|++++...+.+...+.+.+.+
T Consensus 105 k~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 105 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp SSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667766333333322 2355888999999999999999998888888777766644
No 51
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.71 E-value=38 Score=19.38 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 88 REDKIARQIDEYTRLIASIKAQIKLVCE 115 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~i~~v~~ 115 (134)
+|+.+...+++..++++.++.+.+.+++
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 52
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.60 E-value=52 Score=20.90 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 78 WSEALKFISQREDKI---ARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 78 ~~eA~~~l~kri~~L---~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
+.+=...+.+|.+.| +..++.+.+.+.++.+.|+.+...+...++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555555544 446888888888888888888777766544
No 53
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.53 E-value=55 Score=26.95 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
++++...-+.++.+.+...++.++.++..+++++..-+..-++|++
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n 52 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHN 52 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888888888888888888888887665555455544
No 54
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=46.61 E-value=40 Score=20.97 Aligned_cols=28 Identities=7% Similarity=0.287 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIA 104 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~ 104 (134)
.+.+|..|-+.|...|+.++++..+.+.
T Consensus 24 ~l~~AN~YTD~KF~qL~nKi~k~~kr~~ 51 (64)
T 3lt7_A 24 AIRESNQYTDHKFHQLENRLDKLEKRLL 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 3567777777888887777777766543
No 55
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.55 E-value=44 Score=28.93 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
++.=+.+|+.+++.--.++..|+..|...+..|+.++..|
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555544
No 56
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.63 E-value=34 Score=28.35 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=38.2
Q ss_pred ceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 70 LGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 70 ~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
+|+=+.-+++++..-+..||+.|++.++.+++.-..+..-++.+.+.+++.
T Consensus 50 sGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~ 100 (390)
T 1deq_A 50 SGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGD 100 (390)
T ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 366677788999999999999999998888776666666666655555543
No 57
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=43.95 E-value=64 Score=22.40 Aligned_cols=36 Identities=6% Similarity=0.128 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKL 112 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~ 112 (134)
+.+++.+.+..+.+.|.++++.++..+..++..+..
T Consensus 77 ~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~ 112 (146)
T 3hh0_A 77 ETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKK 112 (146)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899999999888888888888777653
No 58
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=43.50 E-value=48 Score=22.25 Aligned_cols=36 Identities=6% Similarity=0.128 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 86 SQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 86 ~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
..|+..|+..++.|...-..+-.++..+.+.++.+.
T Consensus 5 ~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 5 GGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666666666666666666665543
No 59
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=42.19 E-value=95 Score=24.43 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=37.0
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 76 FTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 76 ~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
.-.+....-++.+++.+.+.+.++.+.+.++-..|..++..+++++.+
T Consensus 212 ~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 212 TYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 336677777888888888888888888888888888888888877655
No 60
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=41.98 E-value=1e+02 Score=22.60 Aligned_cols=43 Identities=7% Similarity=0.012 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
+.+.-+-+..|++.+.+....|.+++....+....+...|+.+
T Consensus 94 l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsL 136 (170)
T 3l4q_C 94 ILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSL 136 (170)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6678899999999999999999999998888888888777665
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=40.96 E-value=88 Score=23.60 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 81 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 81 A~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
=++++++++..+++.+..+...+..++..+......+
T Consensus 98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444444444443333
No 62
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.41 E-value=92 Score=25.40 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 79 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 79 ~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
++-++.++++...+++.+++++..+.++++++..-+..-++|+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~ 51 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLH 51 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566665555555555554444444443
No 63
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=40.39 E-value=60 Score=19.59 Aligned_cols=50 Identities=4% Similarity=0.007 Sum_probs=36.8
Q ss_pred eeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 71 GFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 71 g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
|..=|+|+-++.--+.+.+..|+.....+.+.+.+-+..=+.++..++.+
T Consensus 1 ~~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 1 GPLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558899999999999999999999998888876666556666555543
No 64
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=39.49 E-value=59 Score=19.25 Aligned_cols=35 Identities=6% Similarity=0.040 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 83 KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 83 ~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
.-|..++..|..+++.|+.++..++..+....+..
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA 41 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDA 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666665544443
No 65
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=39.44 E-value=25 Score=23.06 Aligned_cols=30 Identities=7% Similarity=0.242 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 81 ALKFISQREDKIARQIDEYTRLIASIKAQI 110 (134)
Q Consensus 81 A~~~l~kri~~L~~~~~~l~~~l~~ik~~i 110 (134)
..+.++.+++.++++++.++..+..+...+
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655543
No 66
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=39.18 E-value=87 Score=23.97 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=50.2
Q ss_pred EEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 66 VDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 66 V~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
..-|.+-.+..-+..-...++.|...++..+++.+.+.+..++++.++-.+++++..
T Consensus 157 f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~ 213 (228)
T 3q0x_A 157 FRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLRE 213 (228)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777888888899999999999999999999999999999999999998888654
No 67
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.06 E-value=13 Score=30.65 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 84 FISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 84 ~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
-++.+++.+++...++++.+.+++.++..+.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554444
No 68
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.00 E-value=79 Score=20.55 Aligned_cols=40 Identities=8% Similarity=0.049 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 80 EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
+.+.-+..++..+...+..+...+..++..+..+...++.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~ 103 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKR 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777777777666663
No 69
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=38.60 E-value=71 Score=19.94 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKAQIK 111 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~~i~ 111 (134)
++.+..+...++...+.+..+...+++++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666654
No 70
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=38.32 E-value=1e+02 Score=24.75 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
++..+.....++..|+..+...+++|..+.+.+.++.+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555556666666666666666666665555544
No 71
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=38.13 E-value=48 Score=21.12 Aligned_cols=21 Identities=5% Similarity=0.251 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032758 95 QIDEYTRLIASIKAQIKLVCE 115 (134)
Q Consensus 95 ~~~~l~~~l~~ik~~i~~v~~ 115 (134)
++..++.++..+.+.+..++.
T Consensus 46 KLa~ln~kL~~lE~~L~iLEA 66 (73)
T 3pp5_A 46 KLSDLNEKLTILDRQVDYLEA 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 72
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=36.51 E-value=1.1e+02 Score=21.94 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 83 KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 83 ~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
+|..+++..|++.++.+...+..-+..+..+...+
T Consensus 94 E~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 94 EFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554444433
No 73
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.34 E-value=71 Score=24.88 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
.+-+.+++..|..+.+.|...+...+.++..+.+.+.+|++-
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445677777888888888888888888888888888887764
No 74
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=35.83 E-value=1.4e+02 Score=23.15 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~ 109 (134)
+..++..-++.|++.++..++.+.+.+..+...
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888899988888888888888777776
No 75
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=35.77 E-value=1.3e+02 Score=22.71 Aligned_cols=42 Identities=2% Similarity=-0.115 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
+++...-+..++..++..++.+...+..++..+..+...+.+
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555543
No 76
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=35.16 E-value=41 Score=22.26 Aligned_cols=13 Identities=15% Similarity=0.105 Sum_probs=6.5
Q ss_pred eecHHHHHHHHHH
Q 032758 75 EFTWSEALKFISQ 87 (134)
Q Consensus 75 E~~~~eA~~~l~k 87 (134)
|..++||.++|+.
T Consensus 55 e~~ldEA~eLl~q 67 (102)
T 2qyw_A 55 DEKQQEANETLAE 67 (102)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555544
No 77
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=35.03 E-value=46 Score=21.95 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=10.5
Q ss_pred EeecHHHHHHHHHHH
Q 032758 74 VEFTWSEALKFISQR 88 (134)
Q Consensus 74 VE~~~~eA~~~l~kr 88 (134)
||..++||.++|+.-
T Consensus 43 ie~~l~EA~ell~qM 57 (102)
T 1vcs_A 43 VEKQLEEARELLEQM 57 (102)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466777777777763
No 78
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.39 E-value=95 Score=20.16 Aligned_cols=35 Identities=11% Similarity=0.165 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 89 EDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 89 i~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
...+....+.|..+=..+++++..+...++.|.++
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556666666655555555443
No 79
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=34.18 E-value=12 Score=20.71 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKA 108 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~ 108 (134)
.+-+++||..|....+.++.++..++.
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666554443
No 80
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=33.95 E-value=74 Score=20.11 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
+..|.+|| ..|+.....+..+...++.+...+...+++
T Consensus 42 L~kA~~yI----~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 42 LTKAKLHI----KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666654 345555555666666666666665555543
No 81
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=33.42 E-value=90 Score=19.59 Aligned_cols=39 Identities=3% Similarity=0.020 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 79 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 79 ~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
++....+..|++.|+..-+.+.......+..+.......
T Consensus 77 ~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~ 115 (119)
T 3uun_A 77 EDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDL 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567899999999999999988877777776655443
No 82
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.18 E-value=1e+02 Score=20.10 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 84 FISQREDKIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 84 ~l~kri~~L~~~~~~l~~~l~~ik~~ 109 (134)
-+..++..|+.+.+.+.+++...+++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666553
No 83
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.01 E-value=82 Score=19.03 Aligned_cols=23 Identities=4% Similarity=0.183 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032758 90 DKIARQIDEYTRLIASIKAQIKL 112 (134)
Q Consensus 90 ~~L~~~~~~l~~~l~~ik~~i~~ 112 (134)
..|+.+.+.|..+-..++.++..
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 84
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=33.00 E-value=73 Score=22.31 Aligned_cols=11 Identities=0% Similarity=-0.103 Sum_probs=6.3
Q ss_pred ecHHHHHHHHH
Q 032758 76 FTWSEALKFIS 86 (134)
Q Consensus 76 ~~~~eA~~~l~ 86 (134)
+|+++..++++
T Consensus 68 ~sl~eI~~~l~ 78 (154)
T 2zhg_A 68 IPLATIGEAFG 78 (154)
T ss_dssp CCHHHHHHHHC
T ss_pred CCHHHHHHHHH
Confidence 45566666654
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.97 E-value=1e+02 Score=19.96 Aligned_cols=11 Identities=0% Similarity=0.169 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 032758 88 REDKIARQIDE 98 (134)
Q Consensus 88 ri~~L~~~~~~ 98 (134)
.++.|+..-..
T Consensus 28 EieELKekN~~ 38 (81)
T 2jee_A 28 EIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 86
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=32.84 E-value=48 Score=22.14 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 032758 88 REDKIARQIDEYTRLIASIKAQI 110 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~i 110 (134)
|++.|+.++..+++++..++.++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel 30 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEV 30 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444444433
No 87
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.03 E-value=94 Score=19.36 Aligned_cols=33 Identities=6% Similarity=0.079 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
|+.++..|+...+.+..+...++.++..+...+
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444555554444443
No 88
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=31.97 E-value=25 Score=23.03 Aligned_cols=30 Identities=7% Similarity=0.323 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 81 ALKFISQREDKIARQIDEYTRLIASIKAQI 110 (134)
Q Consensus 81 A~~~l~kri~~L~~~~~~l~~~l~~ik~~i 110 (134)
....++.+++.++++++.++..+..++..+
T Consensus 75 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 75 PRAHLRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777766654
No 89
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=31.90 E-value=79 Score=18.65 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=27.6
Q ss_pred eEEeecH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 72 FHVEFTW-SEALKFISQREDKIARQIDEYTRLIASIK 107 (134)
Q Consensus 72 ~~VE~~~-~eA~~~l~kri~~L~~~~~~l~~~l~~ik 107 (134)
|.++... ++-++||..+.+.+...++.+++++..++
T Consensus 13 y~lD~~~~~eik~~L~~QQ~g~~~Li~ivk~DleDL~ 49 (51)
T 3t98_A 13 YYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIK 49 (51)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 5555544 77788899888888888888888877664
No 90
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.82 E-value=90 Score=25.17 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032758 88 REDKIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~ 109 (134)
|+++++.++.+++.++...+++
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333
No 91
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=31.77 E-value=61 Score=17.14 Aligned_cols=27 Identities=4% Similarity=0.278 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 92 IARQIDEYTRLIASIKAQIKLVCEGIC 118 (134)
Q Consensus 92 L~~~~~~l~~~l~~ik~~i~~v~~~i~ 118 (134)
|++...+++....+++.++..+++..+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555443
No 92
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.90 E-value=67 Score=17.35 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032758 89 EDKIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 89 i~~L~~~~~~l~~~l~~ik~~ 109 (134)
++.|+...+++-.....+.++
T Consensus 2 MnQLEdKVEell~~~~~le~E 22 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNE 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHH
Confidence 344444444444443333333
No 93
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=30.65 E-value=72 Score=18.97 Aligned_cols=17 Identities=6% Similarity=0.106 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032758 88 REDKIARQIDEYTRLIA 104 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~ 104 (134)
++..++..+..++.++.
T Consensus 8 ~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 94
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=30.52 E-value=1.6e+02 Score=22.68 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 87 kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
.|++.|++.++.+.+.......+++..++.++.
T Consensus 13 ErIs~le~rleei~q~eq~~ekrik~ne~sL~d 45 (233)
T 2yko_A 13 ERVSAAEDEINEIKREGKFREKRIKRNEQSLQE 45 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333344444444433
No 95
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=30.43 E-value=65 Score=21.54 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~ 109 (134)
|.+|+..|+++++.|+..+..++..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5667777777777777777766653
No 96
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=30.31 E-value=1.2e+02 Score=22.02 Aligned_cols=35 Identities=6% Similarity=-0.009 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 032758 91 KIARQIDEYTRLIASIKAQIKLVCEGICELLQLPA 125 (134)
Q Consensus 91 ~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~~ 125 (134)
.|+++++++...+.....+|..+++.++.+.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 38 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLETASY 38 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 56667777777777788888888888888765433
No 97
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=30.19 E-value=1e+02 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=21.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~ 109 (134)
+.++....++.+.+.|+++++.++.....+...
T Consensus 87 ~~~~~~~ll~~~~~~l~~qi~~L~~~~~~L~~~ 119 (154)
T 2zhg_A 87 SAKEWKQLSSQWREELDRRIHTLVALRDELDGC 119 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777666665555443
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.07 E-value=1.4e+02 Score=25.95 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 83 KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 83 ~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
+-|++++..|+..++.--..|..++..|+.....|++|.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777766666677777777777777777664
No 99
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=29.70 E-value=1e+02 Score=20.20 Aligned_cols=31 Identities=10% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKAQIKL 112 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~ 112 (134)
.+|+.+.++..++.+..++..+.+++.++..
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s 37 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLAT 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677788888888888888877777777644
No 100
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.63 E-value=94 Score=18.65 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC 118 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ 118 (134)
..-+..+.+.|+..-..|...+..++.++..+-..|.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777777777777777766655554
No 101
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.29 E-value=1.4e+02 Score=20.64 Aligned_cols=21 Identities=10% Similarity=0.249 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032758 96 IDEYTRLIASIKAQIKLVCEG 116 (134)
Q Consensus 96 ~~~l~~~l~~ik~~i~~v~~~ 116 (134)
+++++.++..++.+++..+..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae 93 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAE 93 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 102
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.25 E-value=65 Score=20.42 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQIKL 112 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i~~ 112 (134)
-+.+|+.+++.++.....+..++.++..
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666665543
No 103
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=29.13 E-value=66 Score=16.72 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032758 98 EYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 98 ~l~~~l~~ik~~i~~v~~~i~q 119 (134)
.+.+++.+++.++..+.+.+.+
T Consensus 3 ~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 3 AIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888887777765
No 104
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=28.88 E-value=68 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=22.4
Q ss_pred eeEEEEec--CCCeeEEEecc-eeEEeecHHHH
Q 032758 52 VYMQADVP--DTQHIFVDIGL-GFHVEFTWSEA 81 (134)
Q Consensus 52 ~yv~a~I~--d~~kVlV~lG~-g~~VE~~~~eA 81 (134)
.|++|+|. .++.|+|++|. ||-|-.|....
T Consensus 3 ~~l~G~l~~~~~~~~vidv~GvGY~v~~~~~t~ 35 (191)
T 1ixr_A 3 RYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFL 35 (191)
T ss_dssp CEEEEEEEEECSSEEEEECSSEEEEEECCHHHH
T ss_pred ceEEEEEEEEeCCEEEEEECCEEEEEEcCHHHH
Confidence 47788877 47789998765 88888876543
No 105
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=28.81 E-value=1.5e+02 Score=20.56 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
-+-|.+||..|+.++..--..+.-++.++..-...|.+|
T Consensus 24 sedLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRL 62 (119)
T 1lwu_A 24 LRELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRV 62 (119)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777766655556666666665555555544
No 106
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.63 E-value=95 Score=19.71 Aligned_cols=18 Identities=6% Similarity=0.215 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRL 102 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~ 102 (134)
+..+|..|+..+..+...
T Consensus 27 le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444433333
No 107
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=28.53 E-value=79 Score=17.39 Aligned_cols=26 Identities=8% Similarity=0.281 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 88 REDKIARQIDEYTRLIASIKAQIKLV 113 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~i~~v 113 (134)
|++.|+...++|-.....+++++..+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34455555555544444444444333
No 108
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=28.10 E-value=1.4e+02 Score=20.30 Aligned_cols=42 Identities=24% Similarity=0.387 Sum_probs=31.0
Q ss_pred eEEEecceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 64 IFVDIGLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASIKA 108 (134)
Q Consensus 64 VlV~lG~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~ 108 (134)
.+=+||.-+- .++.+..-+..++..+..++..++.++++++.
T Consensus 63 ~YnnVGdAl~---ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 63 IYNNVGSALS---ALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp EESSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445665543 57888888888888888888888888887764
No 109
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.09 E-value=98 Score=18.35 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 81 ALKFISQREDKIARQIDEYTRLIASIKAQIKLVC 114 (134)
Q Consensus 81 A~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~ 114 (134)
...-+..+++.|...-+.|..++..++.++..+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666655443
No 110
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=27.76 E-value=2.3e+02 Score=22.51 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhhcC
Q 032758 23 GSSDLRKNIENLEKN 37 (134)
Q Consensus 23 ey~el~~~I~~L~~~ 37 (134)
..+.+++-|+.+.+.
T Consensus 177 ~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 177 DVDADQKRLEEVLGS 191 (346)
T ss_dssp CHHHHHHHHHHHTGG
T ss_pred cHHHHHHHHHHHHHH
Confidence 355677777776643
No 111
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.30 E-value=1.7e+02 Score=20.98 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 77 TWSEALKFISQREDKIA-------RQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~-------~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
++.....-++.|+..++ +.++.+++++..++-+...++..++.++
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 112
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.66 E-value=1.5e+02 Score=23.76 Aligned_cols=37 Identities=3% Similarity=0.014 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 80 EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEG 116 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~ 116 (134)
..+.-.+.++..|+..++.++..+.+++.++..++..
T Consensus 19 ~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 19 QIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666666666666555543
No 113
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.64 E-value=1.2e+02 Score=18.85 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 79 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEG 116 (134)
Q Consensus 79 ~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~ 116 (134)
.+++.-=+-+|..|+..++.-...+.+++.++..+...
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445555444444444444444444444333
No 114
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=26.16 E-value=90 Score=19.67 Aligned_cols=27 Identities=11% Similarity=0.288 Sum_probs=20.1
Q ss_pred cCCCeeEEEecceeEEeecHHHHHHHHH
Q 032758 59 PDTQHIFVDIGLGFHVEFTWSEALKFIS 86 (134)
Q Consensus 59 ~d~~kVlV~lG~g~~VE~~~~eA~~~l~ 86 (134)
...+.|+|++|.-.-. .+-++|.+.++
T Consensus 37 ~vGD~VLVH~GfAi~~-ideeeA~etl~ 63 (75)
T 2z1c_A 37 KPGDWVIVHTGFAIEK-LDEKKAMEILE 63 (75)
T ss_dssp CTTCEEEEETTEEEEE-ECHHHHHHHHH
T ss_pred CCCCEEEEecchhhhh-CCHHHHHHHHH
Confidence 3578999999855443 68888888765
No 115
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.85 E-value=1.1e+02 Score=18.01 Aligned_cols=39 Identities=15% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032758 83 KFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELL 121 (134)
Q Consensus 83 ~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~ 121 (134)
.-+..+...|..+=.+|...+..-+++|..+.+.+..|.
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 346677777777777778888888888888888777653
No 116
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=25.60 E-value=71 Score=23.68 Aligned_cols=28 Identities=11% Similarity=0.354 Sum_probs=18.9
Q ss_pred eeEEEEec--CCCeeEEEecc-eeEEeecHH
Q 032758 52 VYMQADVP--DTQHIFVDIGL-GFHVEFTWS 79 (134)
Q Consensus 52 ~yv~a~I~--d~~kVlV~lG~-g~~VE~~~~ 79 (134)
.|++|+|. .++.|+|++|. ||-|-.|..
T Consensus 3 ~~l~G~l~~~~~~~vvidv~GVGY~v~~~~~ 33 (203)
T 1cuk_A 3 GRLRGIIIEKQPPLVLIEVGGVGYEVHMPMT 33 (203)
T ss_dssp CEEEEEEEEEETTEEEEEETTEEEEEECCHH
T ss_pred ceEEEEEEEEeCCEEEEEECCEEEEEEcCHH
Confidence 36777776 36778888655 777776544
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.53 E-value=1.1e+02 Score=18.03 Aligned_cols=34 Identities=0% Similarity=0.191 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTRLIASIKAQIKLVCE 115 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~ 115 (134)
..-+..+.+.|+..-..|..++..++.++..+..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777766665544
No 118
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=25.41 E-value=2.5e+02 Score=22.63 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
+.+--+-++.|++.+.+...+|++++....+....++..|+.
T Consensus 203 ~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (373)
T 3hhm_B 203 IMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNS 244 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566788888888888888888888777777666666653
No 119
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=25.16 E-value=1.4e+02 Score=18.98 Aligned_cols=37 Identities=14% Similarity=0.164 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 032758 88 REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQLP 124 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~~ 124 (134)
+...+....+.|..+=..++.++..+...+..|.++-
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667788888888888888888888888888764
No 120
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=25.06 E-value=1.1e+02 Score=20.32 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQI 110 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i 110 (134)
++|+++.+.+.++++++.+..-+...
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F 79 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAF 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444433
No 121
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=24.75 E-value=42 Score=26.91 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 89 EDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 89 i~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
+..++.++..|+..+..++++|..+...+.+|
T Consensus 13 Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l 44 (319)
T 1fzc_C 13 ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 44 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 122
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.49 E-value=93 Score=16.87 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 88 REDKIARQIDEYTRLIASIKAQIK 111 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~i~ 111 (134)
|++.|+...++|-..-..+.+++.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~ 25 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXA 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHH
Confidence 445555555555444444444443
No 123
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.47 E-value=2.1e+02 Score=22.93 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032758 80 EALKFISQREDKIARQID 97 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~ 97 (134)
+....|.++++.+++...
T Consensus 397 ~~~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHH
Confidence 334445555555554433
No 124
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.47 E-value=1.1e+02 Score=17.64 Aligned_cols=13 Identities=0% Similarity=0.442 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 032758 83 KFISQREDKIARQ 95 (134)
Q Consensus 83 ~~l~kri~~L~~~ 95 (134)
.|+.+++..|++.
T Consensus 6 aylrkkiarlkkd 18 (52)
T 3he5_B 6 AYLRKKIARLKKD 18 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 4667777666654
No 125
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.47 E-value=1e+02 Score=17.47 Aligned_cols=27 Identities=7% Similarity=0.265 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQIK 111 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i~ 111 (134)
++.|.+.|+....+|...+..++..=.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344555555555555555544444433
No 126
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=24.40 E-value=1.4e+02 Score=18.80 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 80 EALKFISQREDKIARQIDEYTRLIASIKAQIK 111 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~ 111 (134)
+=+..+..+...+....+.+..+...+++++.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666666666655554
No 127
>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} SCOP: b.52.2.2 c.81.1.1
Probab=24.12 E-value=72 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.1
Q ss_pred ceeEEeecHHHHHHHHHHHHHHHHHH
Q 032758 70 LGFHVEFTWSEALKFISQREDKIARQ 95 (134)
Q Consensus 70 ~g~~VE~~~~eA~~~l~kri~~L~~~ 95 (134)
.|=|++.|.|||.+.+.++++.+.++
T Consensus 111 ~g~~~~iSWdeAl~~ia~~l~~i~~~ 136 (829)
T 1tmo_A 111 DFRFVRVTWDKALTLFKHSLDEVQTQ 136 (829)
T ss_dssp SCEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEecHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999887653
No 128
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.08 E-value=2.1e+02 Score=23.62 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 79 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 79 ~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
+.=+.+|+++++.--.++..|+..+...+..|+.++..|
T Consensus 119 e~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 119 RSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333344444444444444444444444
No 129
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.90 E-value=1.4e+02 Score=18.84 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 88 REDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
.++.++-.+..+..+++.++.++...+..++.|++.
T Consensus 9 sVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~a 44 (74)
T 1avy_A 9 KIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEA 44 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccccchhhhheeeccccchhhhhhhhhHHHHhc
Confidence 456677777788888888888888888888888764
No 130
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.71 E-value=1.4e+02 Score=18.93 Aligned_cols=21 Identities=5% Similarity=0.278 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032758 95 QIDEYTRLIASIKAQIKLVCE 115 (134)
Q Consensus 95 ~~~~l~~~l~~ik~~i~~v~~ 115 (134)
++..++.++..+.+.+..++.
T Consensus 46 KLa~ln~KL~~LEr~L~iLEA 66 (75)
T 3p8c_E 46 RLATLNEKLTALERRIEYIEA 66 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 131
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.70 E-value=1.5e+02 Score=21.32 Aligned_cols=28 Identities=7% Similarity=0.010 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 89 EDKIARQIDEYTRLIASIKAQIKLVCEG 116 (134)
Q Consensus 89 i~~L~~~~~~l~~~l~~ik~~i~~v~~~ 116 (134)
++.|+....+....+.+++++++.+...
T Consensus 7 ~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q 34 (155)
T 2aze_A 7 CQNLEVERQRRLERIKQKQSQLQELILQ 34 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555544433
No 132
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.69 E-value=1.9e+02 Score=20.11 Aligned_cols=34 Identities=15% Similarity=0.159 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 87 kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
..+..++..++.+.+++.+++..++.++..+.+|
T Consensus 96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 96 HELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444555555555555555555444
No 133
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=23.42 E-value=1.8e+02 Score=22.28 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 78 WSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
.++-+.-+++|++.+....+...+.+...++.+..+...++. .|+
T Consensus 11 ~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr-~NI 55 (233)
T 2yko_A 11 LEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKR-PNL 55 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cce
Confidence 456677778888888877777777777777778777777765 443
No 134
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.41 E-value=1.4e+02 Score=18.64 Aligned_cols=39 Identities=5% Similarity=-0.072 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 80 EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC 118 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ 118 (134)
+...-+..|++.|+..-+.+.......+..+.......+
T Consensus 78 ~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~~Q 116 (118)
T 3uul_A 78 EEEFEIQEQMTLLNARWEALRVESMERQSRLHDALMELQ 116 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344568899999999999998888777777766554443
No 135
>1eu1_A Dimethyl sulfoxide reductase; molybdenum, molybdenum cofactor, DMSO, molybdopte oxidoreductase; HET: GLC MGD EPE; 1.30A {Rhodobacter sphaeroides} SCOP: b.52.2.2 c.81.1.1 PDB: 4dmr_A* 1dmr_A* 1e5v_A* 1h5n_A* 2dmr_A* 3dmr_A* 1e61_A* 1e60_A* 1e18_A* 1dms_A*
Probab=23.36 E-value=69 Score=27.90 Aligned_cols=27 Identities=30% Similarity=0.608 Sum_probs=24.0
Q ss_pred cceeEEeecHHHHHHHHHHHHHHHHHH
Q 032758 69 GLGFHVEFTWSEALKFISQREDKIARQ 95 (134)
Q Consensus 69 G~g~~VE~~~~eA~~~l~kri~~L~~~ 95 (134)
|.|=|++.|.|||.+.+.+|++.+.++
T Consensus 77 G~g~~~~iSWdeAl~~ia~~l~~i~~~ 103 (780)
T 1eu1_A 77 GNGDFVRVTWDEALDLVARELKRVQES 103 (780)
T ss_dssp TSSCEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEecHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999888753
No 136
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=23.21 E-value=71 Score=27.49 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.5
Q ss_pred ceeEEeecHHHHHHHHHHHHHHHHH
Q 032758 70 LGFHVEFTWSEALKFISQREDKIAR 94 (134)
Q Consensus 70 ~g~~VE~~~~eA~~~l~kri~~L~~ 94 (134)
.|=|++.|.|||.+.+.++++.+.+
T Consensus 72 ~g~~~~isWdeAl~~ia~~l~~i~~ 96 (727)
T 2e7z_A 72 EQRWERISWDQALDEIAEKLKKIIA 96 (727)
T ss_dssp CCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEecHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999888765
No 137
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=23.13 E-value=21 Score=23.51 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=10.5
Q ss_pred ecchHHHHHHHHHH
Q 032758 8 LGDCFFYLVYLTLN 21 (134)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (134)
+|||+|||.-..-.
T Consensus 81 lgDvL~~l~~lA~~ 94 (111)
T 2oie_A 81 LSDVLIYLVALAAR 94 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 79999998765443
No 138
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=22.89 E-value=1.9e+02 Score=23.17 Aligned_cols=41 Identities=2% Similarity=0.068 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 80 EALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
-+..+|..|+..++..+..+++++...+..+..+...++..
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~ 342 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNE 342 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999998888877654
No 139
>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*
Probab=22.74 E-value=73 Score=27.69 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.5
Q ss_pred ceeEEeecHHHHHHHHHHHHHHHHH
Q 032758 70 LGFHVEFTWSEALKFISQREDKIAR 94 (134)
Q Consensus 70 ~g~~VE~~~~eA~~~l~kri~~L~~ 94 (134)
.|=|++.|.|||.+.+.++++.+.+
T Consensus 109 ~g~~~~isWdeAl~~ia~~l~~i~~ 133 (765)
T 2vpz_A 109 EGKYRVATWEEALDHIAKKMLEIRE 133 (765)
T ss_dssp SCCEEECCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEeeHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999988765
No 140
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.72 E-value=2.1e+02 Score=22.16 Aligned_cols=33 Identities=12% Similarity=0.055 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 032758 89 EDKIARQIDEYTRLIASIKAQIKLVCEG---ICELL 121 (134)
Q Consensus 89 i~~L~~~~~~l~~~l~~ik~~i~~v~~~---i~ql~ 121 (134)
++.+...+..+.+.+.++++++..+... +.+|.
T Consensus 101 ~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~ 136 (357)
T 3rrk_A 101 LRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLA 136 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 5666666666666667777777766666 66655
No 141
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.54 E-value=1.5e+02 Score=18.61 Aligned_cols=33 Identities=6% Similarity=0.214 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
++.|+..++..++.-+..-...+..++.+.+.+
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555455555555555444
No 142
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=22.46 E-value=2.3e+02 Score=20.57 Aligned_cols=43 Identities=9% Similarity=0.052 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 77 TWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 77 ~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
+.+++.+.+..++..+.+++..+.+....+...-..+...+.+
T Consensus 119 e~~~~~~~l~~~L~~l~~~l~~le~~~~~l~~~~~~~~~~~~~ 161 (202)
T 2p4w_A 119 PINVKMRELAEFLHELNERIREIIEEKRELEEARILIETYIEN 161 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4555556777777777777777666554444444444444443
No 143
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.32 E-value=99 Score=18.01 Aligned_cols=20 Identities=5% Similarity=0.117 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032758 82 LKFISQREDKIARQIDEYTR 101 (134)
Q Consensus 82 ~~~l~kri~~L~~~~~~l~~ 101 (134)
++-++.|+..|+..+..++.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544443
No 144
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=22.28 E-value=1e+02 Score=16.59 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 032758 90 DKIARQIDEYTRL 102 (134)
Q Consensus 90 ~~L~~~~~~l~~~ 102 (134)
+.|+...++|-..
T Consensus 3 nQLEdKvEeLl~~ 15 (33)
T 3c3g_A 3 KXIEXKLXEIXSK 15 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 3444444444333
No 145
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.22 E-value=1.1e+02 Score=20.25 Aligned_cols=28 Identities=4% Similarity=0.057 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 96 IDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 96 ~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
++.++.++..++.++....+.+.++++.
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4566777777777777777777777765
No 146
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.95 E-value=1.6e+02 Score=18.77 Aligned_cols=33 Identities=9% Similarity=0.172 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 85 ISQREDKIARQIDEYTRLIASIKAQIKLVCEGI 117 (134)
Q Consensus 85 l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i 117 (134)
++.|+..++..++.-+.+-...+..++.+.+.+
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544445555555544443
No 147
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=21.89 E-value=1.6e+02 Score=22.38 Aligned_cols=40 Identities=5% Similarity=0.017 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 79 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLVCEGIC 118 (134)
Q Consensus 79 ~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ 118 (134)
..|+...+++++.++++++.++.++..+-+....=+....
T Consensus 64 ~~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~ 103 (252)
T 3e98_A 64 GDAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFD 103 (252)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888777666544333333
No 148
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.87 E-value=1.2e+02 Score=20.99 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 87 QREDKIARQIDEYTRLIASIKAQIK 111 (134)
Q Consensus 87 kri~~L~~~~~~l~~~l~~ik~~i~ 111 (134)
.|++.|.+...++++++.+++.++.
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555443
No 149
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=21.85 E-value=91 Score=16.93 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032758 88 REDKIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 88 ri~~L~~~~~~l~~~l~~ik~~ 109 (134)
|++.|+...+.|-..-..+.++
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~E 23 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENE 23 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHH
Confidence 4445555555554444443333
No 150
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=21.78 E-value=1.7e+02 Score=23.41 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=22.9
Q ss_pred eecHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 75 EFTWSEALKFISQREDK------------IARQIDEYTRLIASIKAQIKLVCE 115 (134)
Q Consensus 75 E~~~~eA~~~l~kri~~------------L~~~~~~l~~~l~~ik~~i~~v~~ 115 (134)
+.|.++|.+-+.++++. +++.++.+.+.+..++.++..+.+
T Consensus 355 ~~t~eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 407 (463)
T 2xz3_A 355 RQTVDAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNLLNVAS 407 (463)
T ss_dssp SSCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778877776666543 333445555555555555544433
No 151
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=21.58 E-value=59 Score=21.93 Aligned_cols=42 Identities=14% Similarity=0.191 Sum_probs=26.2
Q ss_pred eEEEecCCceeEEE-------EecCCCeeEEEecceeEEeecHHHHHHHHH
Q 032758 43 RTLVNLGSEVYMQA-------DVPDTQHIFVDIGLGFHVEFTWSEALKFIS 86 (134)
Q Consensus 43 eilVplG~~~yv~a-------~I~d~~kVlV~lG~g~~VE~~~~eA~~~l~ 86 (134)
...|+.+ |+--.+ .+...+.|+|++|.-.-. .+-++|.+.++
T Consensus 39 ~A~Vd~~-Gv~reV~l~Lv~e~~~vGDyVLVHvGfAi~k-IDeeeA~etl~ 87 (103)
T 3d3r_A 39 SVTVDTL-GVRRDVSSHLMTEPLAIGDYVLIHIGFVMNK-IDRNDALQSLE 87 (103)
T ss_dssp EEEEEET-TEEEEEECTTBSSCCCTTCEEEEEEEEEEEE-ECHHHHHHHHH
T ss_pred EEEEEcC-CEEEEEEEEeecCCCCCCCEEEEeechhhhh-CCHHHHHHHHH
Confidence 4566665 333222 233478899999754433 68888887765
No 152
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=21.12 E-value=1.8e+02 Score=21.24 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=30.4
Q ss_pred cceeEEeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 69 GLGFHVEFTWSEALKFISQREDKIARQIDEYTRLIASI 106 (134)
Q Consensus 69 G~g~~VE~~~~eA~~~l~kri~~L~~~~~~l~~~l~~i 106 (134)
+.-|.-..+.+++...+++|+..+++.++.++...+..
T Consensus 133 kl~f~~~l~~~~~~~~L~~~~~~~~~~l~~l~~~~~~~ 170 (204)
T 3l9f_A 133 RLFFGNSLNDDDLEQLIREEIERKEEKIKRLSENLEIW 170 (204)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455568889999999999999999999997765544
No 153
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.87 E-value=1.9e+02 Score=19.03 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=11.8
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHH
Q 032758 76 FTWSEALKFISQREDKIARQIDEY 99 (134)
Q Consensus 76 ~~~~eA~~~l~kri~~L~~~~~~l 99 (134)
+|.+.=++-|.+++..|++.+++-
T Consensus 11 LPpeqRkkkL~~Ki~el~~ei~ke 34 (98)
T 2ke4_A 11 LPPEQQRKRLQQQLEERSRELQKE 34 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554555555555555544433
No 154
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=20.83 E-value=80 Score=18.85 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032758 78 WSEALKFISQREDKIARQIDE 98 (134)
Q Consensus 78 ~~eA~~~l~kri~~L~~~~~~ 98 (134)
++++.+-+.+||+.|++.+..
T Consensus 30 id~~~~d~~~RI~kl~~~L~~ 50 (53)
T 1jy2_N 30 IDEVDQDFTSRINKLRDSLFN 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666665544
No 155
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.82 E-value=1.8e+02 Score=18.80 Aligned_cols=36 Identities=0% Similarity=0.051 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 84 FISQREDKIARQIDEYTRLIASIKAQIKLVCEGICE 119 (134)
Q Consensus 84 ~l~kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~q 119 (134)
-+..+...|+..=..|...+..++.++..+-..+.+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777766666554
No 156
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.80 E-value=2.6e+02 Score=20.66 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=23.1
Q ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 75 EFTWSEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 113 (134)
Q Consensus 75 E~~~~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v 113 (134)
|.-++.-+.-+++|...|......+..+....+..+...
T Consensus 44 E~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 44 EAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666677777666666666665555554443
No 157
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.72 E-value=1.5e+02 Score=24.37 Aligned_cols=43 Identities=7% Similarity=0.176 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032758 80 EALKFISQREDKIARQI-------DEYTRLIASIKAQIKLVCEGICELLQ 122 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~-------~~l~~~l~~ik~~i~~v~~~i~ql~~ 122 (134)
....|..++++.++..+ ..+..+...++.++..+.+.+..++.
T Consensus 18 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444445555554444 44444444555555555555555443
No 158
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.69 E-value=96 Score=15.62 Aligned_cols=19 Identities=0% Similarity=0.378 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032758 91 KIARQIDEYTRLIASIKAQ 109 (134)
Q Consensus 91 ~L~~~~~~l~~~l~~ik~~ 109 (134)
.|-+.++.++..+.+++..
T Consensus 5 elykeledlqerlrklrkk 23 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 159
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.66 E-value=1.9e+02 Score=22.99 Aligned_cols=46 Identities=15% Similarity=0.238 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 032758 78 WSEALKFISQRED-KIARQIDEYTRLIASIKAQIKLVCEGICELLQL 123 (134)
Q Consensus 78 ~~eA~~~l~kri~-~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql~~~ 123 (134)
+++...+++..++ ....++..|+..+..++.+|..++..+.++...
T Consensus 11 le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 11 IENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444432 223356666667777777777777777665544
No 160
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.64 E-value=1.8e+02 Score=18.63 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 91 KIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 91 ~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
.|..+++.++.++..++-++....-.++++
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445555555555555555444444443
No 161
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.57 E-value=1.4e+02 Score=23.15 Aligned_cols=35 Identities=9% Similarity=0.317 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 79 SEALKFISQREDKIARQIDEYTRLIASIKAQIKLV 113 (134)
Q Consensus 79 ~eA~~~l~kri~~L~~~~~~l~~~l~~ik~~i~~v 113 (134)
......+..|.+.|...+..+++++.+++++++.+
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555543
No 162
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.31 E-value=1.1e+02 Score=19.57 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 80 EALKFISQREDKIARQIDEYTRLI 103 (134)
Q Consensus 80 eA~~~l~kri~~L~~~~~~l~~~l 103 (134)
|..+.++.+|..|.++...|+.+=
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN 38 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLEREN 38 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777776666553
No 163
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.27 E-value=1.1e+02 Score=16.09 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032758 90 DKIARQIDEYTRLIASIKAQIK 111 (134)
Q Consensus 90 ~~L~~~~~~l~~~l~~ik~~i~ 111 (134)
..|+..+..+.++++.++-.|.
T Consensus 5 aalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445554444444443
No 164
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=20.26 E-value=1.7e+02 Score=18.46 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=18.8
Q ss_pred EecceeEEeecHHHHHHHHHHHHHHH
Q 032758 67 DIGLGFHVEFTWSEALKFISQREDKI 92 (134)
Q Consensus 67 ~lG~g~~VE~~~~eA~~~l~kri~~L 92 (134)
.++.|-|=++|+++|.+--+.-...+
T Consensus 50 ~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 50 RIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 45667888999999988665544443
No 165
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.15 E-value=2.4e+02 Score=19.94 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032758 87 QREDKIARQIDEYTRLIASIKAQIKLVCEGICEL 120 (134)
Q Consensus 87 kri~~L~~~~~~l~~~l~~ik~~i~~v~~~i~ql 120 (134)
+|+..|++..+...+++......-..+...++.+
T Consensus 92 ~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~ 125 (151)
T 1yke_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSL 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
Done!