BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032759
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NER|A Chain A, Structure Of Human Type B Cytochrome B5
pdb|3NER|B Chain B, Structure Of Human Type B Cytochrome B5
Length = 92
Score = 105 bits (262), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 58/76 (76%)
Query: 8 HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDS 67
++ EEVA N K+ WL+I G+VYDV+ F+++HPGG+EVL+ G DA+ FEDVGHS
Sbjct: 12 YRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSD 71
Query: 68 AREMMDKYYIGDIDPS 83
AREM+ +YYIGDI PS
Sbjct: 72 AREMLKQYYIGDIHPS 87
>pdb|3MUS|A Chain A, 2a Resolution Structure Of Rat Type B Cytochrome B5
pdb|3MUS|B Chain B, 2a Resolution Structure Of Rat Type B Cytochrome B5
Length = 87
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Query: 4 DPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFED 61
DP + ++ EEVA N ++ W++I G+VYD++ F+ +HPGG+EVL+ G DAT FED
Sbjct: 1 DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFED 60
Query: 62 VGHSDSAREMMDKYYIGDIDPS 83
VGHS AREM+ +YYIGD+ P+
Sbjct: 61 VGHSPDAREMLKQYYIGDVHPN 82
>pdb|1AWP|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1AWP|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 92
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 63/89 (70%), Gaps = 2/89 (2%)
Query: 2 ASDPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDF 59
SDP + ++ EEVA N ++ W++I G+VYD++ F+ +HPGG+E+L+ G DAT F
Sbjct: 4 GSDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESF 63
Query: 60 EDVGHSDSAREMMDKYYIGDIDPSTVPRK 88
ED+GHS AREM+ +YYIGD+ P+ + K
Sbjct: 64 EDLGHSPDAREMLKQYYIGDVHPNDLKPK 92
>pdb|1B5M|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 84
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 57/76 (75%)
Query: 8 HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDS 67
++ EEVA N ++ W++I G+VYD++ F+ +HPGG+EVL+ G DAT FEDVGHS
Sbjct: 5 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPD 64
Query: 68 AREMMDKYYIGDIDPS 83
AREM+ +YYIGD+ P+
Sbjct: 65 AREMLKQYYIGDVHPN 80
>pdb|2I89|A Chain A, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|B Chain B, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|C Chain C, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
pdb|2I89|D Chain D, Structure Of Septuple Mutant Of Rat Outer Mitochondrial
Membrane Cytochrome B5
Length = 93
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 2/89 (2%)
Query: 2 ASDPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDF 59
SDP + ++ EEVA HN ++ W+++ G+VYD++ F+ +HPGG+EVL G DAT F
Sbjct: 5 GSDPAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESF 64
Query: 60 EDVGHSDSAREMMDKYYIGDIDPSTVPRK 88
EDVGHS AREM +YYIGD+ P+ + K
Sbjct: 65 EDVGHSPDAREMSKQYYIGDVHPNDLKPK 93
>pdb|1EUE|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1EUE|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 86
Score = 99.4 bits (246), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Query: 4 DPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFED 61
DP + ++ EEVA N ++ W++I G+VYD++ F+ +HPGG+E+L+ G DAT FED
Sbjct: 1 DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEILLEQAGADATESFED 60
Query: 62 VGHSDSAREMMDKYYIGDIDPS 83
+GHS AREM+ +YYIGD+ P+
Sbjct: 61 IGHSPDAREMLKQYYIGDVHPN 82
>pdb|1ICC|A Chain A, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|B Chain B, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|C Chain C, Rat Outer Mitochondrial Membrane Cytochrome B5
pdb|1ICC|D Chain D, Rat Outer Mitochondrial Membrane Cytochrome B5
Length = 87
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Query: 4 DPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFED 61
DP + ++ EEVA N +++ W++I G+VYD++ F+ +HPGG+EVL G DAT FED
Sbjct: 1 DPAVTYYRLEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFED 60
Query: 62 VGHSDSAREMMDKYYIGDIDPS 83
VGHS AREM+ +YYIGD+ P+
Sbjct: 61 VGHSPDAREMLKQYYIGDVHPN 82
>pdb|1LJ0|A Chain A, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|B Chain B, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|C Chain C, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5.
pdb|1LJ0|D Chain D, Structure Of Quintuple Mutant Of The Rat Outer
Mitocondrial Cytochrome B5
Length = 92
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 60/84 (71%), Gaps = 2/84 (2%)
Query: 2 ASDPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDF 59
SDP + ++ EEVA N +++ W+++ G+VYD++ F+ +HPGG+EVL G DAT F
Sbjct: 4 GSDPAVTYYRLEEVAKRNTSEETWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESF 63
Query: 60 EDVGHSDSAREMMDKYYIGDIDPS 83
EDVGHS AREM +YYIGD+ P+
Sbjct: 64 EDVGHSPDAREMSKQYYIGDVHPN 87
>pdb|2I96|A Chain A, Solution Structure Of The Oxidized Microsomal Human
Cytochrome B5
Length = 108
Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT +FEDVGHS
Sbjct: 10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 69
Query: 66 DSAREMMDKYYIGDIDPSTVPRKRAYIPPQ 95
AREM + IG++ P P+ PP+
Sbjct: 70 TDAREMSKTFIIGELHPDDRPKLNK--PPE 97
>pdb|3OZZ|B Chain B, Structure Of A Cytochrome B5 Core-Swap Mutant
Length = 82
Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN K W+II KVYD++ F+ +HPGG+EVL+ G DAT FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNAKSTWMIIHYKVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
AREM+ + IG++ P
Sbjct: 63 PDAREMLKTFIIGELHP 79
>pdb|2M33|A Chain A, Solution Nmr Structure Of Full-length Oxidized
Microsomal Rabbit Cytochrome B5
Length = 104
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG 63
D K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT +FEDVG
Sbjct: 8 DVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67
Query: 64 HSDSAREMMDKYYIGDIDP 82
HS ARE+ + IG++ P
Sbjct: 68 HSTDARELSKTFIIGELHP 86
>pdb|1DO9|A Chain A, Solution Structure Of Oxidized Microsomal Rabbit
Cytochrome B5. Factors Determining The Heterogeneous
Binding Of The Heme
Length = 94
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 54/79 (68%)
Query: 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG 63
D K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT +FEDVG
Sbjct: 3 DVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSDSAREMMDKYYIGDIDP 82
HS ARE+ + IG++ P
Sbjct: 63 HSTDARELSKTFIIGELHP 81
>pdb|1CYO|A Chain A, Bovine Cytochrome B(5)
Length = 93
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT +FEDVGHS
Sbjct: 5 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 65 TDARELSKTFIIGELHP 81
>pdb|1HKO|A Chain A, Nmr Structure Of Bovine Cytochrome B5
Length = 104
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT +FEDVGHS
Sbjct: 9 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 69 TDARELSKTFIIGELHP 85
>pdb|2IBJ|A Chain A, Structure Of House Fly Cytochrome B5
Length = 88
Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 2 ASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFED 61
+ D K EVA +N W II VYDV++F+++HPGG+EVLI GKDAT FED
Sbjct: 3 SEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFED 62
Query: 62 VGHSDSAREMMDKYYIGDI 80
VGHS AREMM +Y +G++
Sbjct: 63 VGHSSDAREMMKQYKVGEL 81
>pdb|1EHB|A Chain A, Crystal Structure Of Recombinant Trypsin-Solubilized
Fragment Of Cytochrome B5
pdb|1NX7|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5
Length = 82
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1U9U|A Chain A, Crystal Structure Of F58y Mutant Of Cytochrome B5
Length = 82
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT ++EDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENYEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1M20|A Chain A, Crystal Structure Of F35y Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ ++++HPGG+EVL G DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG 63
D K + EE+ H +K W+I+ KVYD++ F+++HPGG+EVL G DAT +FEDVG
Sbjct: 8 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 67
Query: 64 HSDSAREMMDKYYIGDIDP 82
HS ARE+ Y IG++ P
Sbjct: 68 HSTDARELSKTYIIGELHP 86
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG 63
D K + EE+ H +K W+I+ KVYD++ F+++HPGG+EVL G DAT +FEDVG
Sbjct: 7 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 66
Query: 64 HSDSAREMMDKYYIGDIDP 82
HS ARE+ Y IG++ P
Sbjct: 67 HSTDARELSKTYIIGELHP 85
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG 63
D K + EE+ H +K W+I+ KVYD++ F+++HPGG+EVL G DAT +FEDVG
Sbjct: 3 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSDSAREMMDKYYIGDIDP 82
HS ARE+ Y IG++ P
Sbjct: 63 HSTDARELSKTYIIGELHP 81
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 53/79 (67%)
Query: 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG 63
D K + EE+ H +K W+I+ KVYD++ F+++HPGG+EVL G DAT +FEDVG
Sbjct: 3 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSDSAREMMDKYYIGDIDP 82
HS ARE+ Y IG++ P
Sbjct: 63 HSTDARELSKTYIIGELHP 81
>pdb|1U9M|A Chain A, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|B Chain B, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|C Chain C, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|D Chain D, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|E Chain E, Crystal Structure Of F58w Mutant Of Cytochrome B5
pdb|1U9M|F Chain F, Crystal Structure Of F58w Mutant Of Cytochrome B5
Length = 82
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT ++EDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENWEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1LR6|A Chain A, Crystal Structure Of V45y Mutant Of Cytochrome B5
Length = 82
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+E L G DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1I5U|A Chain A, Solution Structure Of Cytochrome B5 Triple Mutant
(E48aE56AD60A)
Length = 82
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL + G DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1LQX|A Chain A, Crystal Structure Of V45e Mutant Of Cytochrome B5
Length = 82
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+E L G DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1M2I|A Chain A, Crystal Structure Of E44aE56A MUTANT OF CYTOCHROME B5
Length = 82
Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+ VL G DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLREQAGGDATANFEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1SH4|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V45h
Length = 82
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+E L G DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEHLREQAGGDATENFEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1ES1|A Chain A, Crystal Structure Of Val61his Mutant Of
Trypsin-Solubilized Fragment Of Cytochrome B5
Length = 82
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT +FED GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1J0Q|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant V61h
Length = 82
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+EVL G DAT +FED GHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro
Cytochrome B5, A Conformation, Ensemble Of 20
Structures
Length = 94
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%)
Query: 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG 63
D K + EE+ H +K W+I+ KVYD++ ++++HPGG+EVL G DAT +FEDVG
Sbjct: 3 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSDSAREMMDKYYIGDIDP 82
HS ARE+ Y IG++ P
Sbjct: 63 HSTDARELSKTYIIGELHP 81
>pdb|1M59|A Chain A, Crystal Structure Of P40v Mutant Of Trypsin-Solubilized
Fragment Of Cytochrome B5
Length = 82
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++H GG+EVL G DAT +FEDVGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG 63
D K + EE+ H +K W+I+ KVYD++ F+++HPGG+EVL G DAT +FEDVG
Sbjct: 3 DVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVG 62
Query: 64 HSDSAREMMDKYYIGDIDP 82
HS RE+ Y IG++ P
Sbjct: 63 HSTDVRELSKTYIIGELHP 81
>pdb|1M2M|A Chain A, Crystal Structure Of E44aE48AE56AD60A MUTANT OF
Cytochrome B5
Length = 82
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+ VL + G DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|1F03|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
pdb|1F04|A Chain A, Solution Structure Of Oxidized Bovine Microsomal
Cytochrome B5 Mutant (E44a, E48a, E56a, D60a) And Its
Interaction With Cytochrome C
Length = 82
Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 52/77 (67%)
Query: 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHS 65
K + EE+ HN +K WLI+ KVYD++ F+++HPGG+ VL + G DAT +FE VGHS
Sbjct: 3 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHS 62
Query: 66 DSAREMMDKYYIGDIDP 82
ARE+ + IG++ P
Sbjct: 63 TDARELSKTFIIGELHP 79
>pdb|3KS0|A Chain A, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
pdb|3KS0|B Chain B, Crystal Structure Of The Heme Domain Of Flavocytochrome
B2 In Complex With Fab B2b4
Length = 95
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 12 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREM 71
EVA HNK DCW++I+G VYD++ F+ +HPGG +V+ GKD T FE + A +
Sbjct: 10 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 65
Query: 72 MDKY 75
+DKY
Sbjct: 66 IDKY 69
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 12 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREM 71
EVA HNK DCW++I+G VYD++ F+ +HPGG +V+ GKD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 72 MDKYY-----IGDIDPSTVPRKRAYIPPQQPAYNQD 102
+DKY +G + S P PP P ++
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKE 104
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 12 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREM 71
EVA HNK DCW++I+G VYD++ F+ +HPGG +V+ GKD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 72 MDKYY-----IGDIDPSTVPRKRAYIPPQQPAYNQD 102
+DKY +G + S P PP P ++
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKE 104
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 12 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREM 71
EVA HNK DCW++I+G VYD++ F+ +HPGG +V+ GKD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 72 MDKYY-----IGDIDPSTVPRKRAYIPPQQPAYNQD 102
+DKY +G + S P PP P ++
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKE 104
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 12 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREM 71
EVA HNK DCW++I+G VYD++ F+ +HPGG +V+ GKD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 72 MDKYY-----IGDIDPSTVPRKRAYIPPQQPAYNQD 102
+DKY +G + S P PP P ++
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKE 104
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 12 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREM 71
EVA HNK DCW++I+G VYD++ F+ +HPGG +V+ GKD T FE + A +
Sbjct: 10 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 65
Query: 72 MDKYY-----IGDIDPSTVPRKRAYIPPQQPAYNQD 102
+DKY +G + S P PP P ++
Sbjct: 66 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKE 99
>pdb|3LF5|A Chain A, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
pdb|3LF5|B Chain B, Structure Of Human Nadh Cytochrome B5 Oxidoreductase
(Ncb5or) B5 Domain To 1.25a Resolution
Length = 88
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 11 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSARE 70
EE+ HNK DCW+ I G VY+VS +M+ HPGG++ L+ A G D T F+ V +
Sbjct: 11 EELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYES 70
Query: 71 MMDKYYIGD--IDPSTV 85
M+ + +G I P+ +
Sbjct: 71 MLKECLVGRMAIKPAVL 87
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 11/96 (11%)
Query: 12 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREM 71
EVA HNK DCW++I+G VYD++ F+ +HPGG +V+ GKD T FE + A +
Sbjct: 15 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNV 70
Query: 72 MDKYY-----IGDIDPSTVPRKRAYIPPQQPAYNQD 102
+DKY +G + S P PP P ++
Sbjct: 71 IDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKE 104
>pdb|1CXY|A Chain A, Structure And Characterization Of Ectothiorhodospira
Vacuolata Cytochrome B558, A Prokaryotic Homologue Of
Cytochrome B5
Length = 90
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 7 IHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG--- 63
+ E+VA H+ DCW+ I GKVYD++ ++ +HPG +++ G+++T +E
Sbjct: 9 VFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGE 68
Query: 64 -HSDSAREMMDKYYIGDIDPST 84
HS A ++ +Y IG ++ T
Sbjct: 69 PHSSLAARLLQRYLIGTLEEIT 90
>pdb|1X3X|A Chain A, Crystal Structure Of Cytochrome B5 From Ascaris Suum
pdb|1X3X|B Chain B, Crystal Structure Of Cytochrome B5 From Ascaris Suum
Length = 82
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 11 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVG-HSDSAR 69
EEVA HN D W+I G+V+D++SF +HPGG +V+++ G+DAT+ + + H +A
Sbjct: 9 EEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKAAD 67
Query: 70 EMMDK 74
+M K
Sbjct: 68 VVMKK 72
>pdb|1MJ4|A Chain A, Crystal Structure Analysis Of The Cytochrome B5 Domain
Of Human Sulfite Oxidase
Length = 82
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 7 IHQFEEVATHNKTK-DCWLIISGKVYDVSSFMDDHPGGDEVLISATGK--DATNDFEDVG 63
I+ EEV++H + W+ + +V+DV+ F+D HPGG L+ A G + V
Sbjct: 6 IYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVH 65
Query: 64 HSDSAREMMDKYYIGDI 80
+ RE++ +Y IG++
Sbjct: 66 NQSHVRELLAQYKIGEL 82
>pdb|3HC2|A Chain A, Crystal Structure Of Chicken Sulfite Oxidase Mutant Tyr
322 Phe
Length = 466
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 11 EEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGG-DEVLISATGK-DATNDFEDVGHSDS 67
EEV H ++ W+ V+DV+ F++ HPGG D++L++A G + V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPH 69
Query: 68 AREMMDKYYIGDIDPSTVPRKR------AYIPPQQPAYNQDKTPEF 107
E++ +Y +G++ P P A PP+ P + F
Sbjct: 70 VLELLQQYKVGELSPDEAPAAPDAQDPFAGDPPRHPGLRVNSQKPF 115
>pdb|3R18|A Chain A, Chicken Sulfite Oxidase Double Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 11 EEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGG-DEVLISATGK-DATNDFEDVGHSDS 67
EEV H ++ W+ V+DV+ F++ HPGG D++L++A G + V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPH 69
Query: 68 AREMMDKYYIGDIDPSTVPRKR------AYIPPQQPAYNQDKTPEF 107
E++ +Y +G++ P P A PP+ P + F
Sbjct: 70 VLELLQQYKVGELSPDEAPAAPDAQDPFAGDPPRHPGLRVNSQKPF 115
>pdb|3R19|A Chain A, Chicken Sulfite Oxidase Triple Mutant With Altered
Activity And Substrate Affinity
Length = 466
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 11 EEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGG-DEVLISATGK-DATNDFEDVGHSDS 67
EEV H ++ W+ V+DV+ F++ HPGG D++L++A G + V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPH 69
Query: 68 AREMMDKYYIGDIDPSTVPRKR------AYIPPQQPAYNQDKTPEF 107
E++ +Y +G++ P P A PP+ P + F
Sbjct: 70 VLELLQQYKVGELSPDEAPAAPDAQDPFAGDPPRHPGLRVNSQKPF 115
>pdb|1SOX|A Chain A, Sulfite Oxidase From Chicken Liver
pdb|1SOX|B Chain B, Sulfite Oxidase From Chicken Liver
Length = 466
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 11 EEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGG-DEVLISATGK-DATNDFEDVGHSDS 67
EEV H ++ W+ V+DV+ F++ HPGG D++L++A G + V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPH 69
Query: 68 AREMMDKYYIGDIDPSTVPRKR------AYIPPQQPAYNQDKTPEF 107
E++ +Y +G++ P P A PP+ P + F
Sbjct: 70 VLELLQQYKVGELSPDEAPAAPDAQDPFAGDPPRHPGLRVNSQKPF 115
>pdb|3HBG|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant C185s
pdb|3HBP|A Chain A, The Crystal Structure Of C185s Mutant Of Recombinant
Sulfite Oxidase With Bound Substrate, Sulfite, At The
Active Site
Length = 466
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 11 EEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGG-DEVLISATGK-DATNDFEDVGHSDS 67
EEV H ++ W+ V+DV+ F++ HPGG D++L++A G + V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPH 69
Query: 68 AREMMDKYYIGDIDPSTVPRKR------AYIPPQQPAYNQDKTPEF 107
E++ +Y +G++ P P A PP+ P + F
Sbjct: 70 VLELLQQYKVGELSPDEAPAAPDAQDPFAGDPPRHPGLRVNSQKPF 115
>pdb|3HBQ|A Chain A, Structure Of Recombinant Chicken Liver Sulfite Oxidase
Mutant Cys 185 Ala
Length = 466
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 11 EEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGG-DEVLISATGK-DATNDFEDVGHSDS 67
EEV H ++ W+ V+DV+ F++ HPGG D++L++A G + V
Sbjct: 10 EEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGALEPFWALYAVHGEPH 69
Query: 68 AREMMDKYYIGDIDPSTVPRKR------AYIPPQQPAYNQDKTPEF 107
E++ +Y +G++ P P A PP+ P + F
Sbjct: 70 VLELLQQYKVGELSPDEAPAAPDAQDPFAGDPPRHPGLRVNSQKPF 115
>pdb|2KEO|A Chain A, Solution Nmr Structure Of Human Protein Hs00059,
Cytochrome-B5-Like Domain Of The Herc2 E3 Ligase.
Northeast Structural Genomics Consortium (Nesg) Target
Ht98a
Length = 112
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 5/80 (6%)
Query: 12 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREM 71
++ HN W +I GKVYD+ F + +L G+D E + RE
Sbjct: 30 DLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRES 89
Query: 72 MDKYYIG-----DIDPSTVP 86
M + +G D + T+P
Sbjct: 90 MHAFCVGQYLEPDQEGVTIP 109
>pdb|3NZT|A Chain A, 2.0 Angstrom Crystal Structure Of Glutamate--Cysteine
Ligase (Gsha) Ftom Francisella Tularensis In Complex
With Amp
Length = 525
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 28 GKVYDVSSFMDDHPGGDEVLISATGKDATNDFE----DVGHSDSAR 69
G++Y +S+F D+ DE++++ + + ND + D G S+S R
Sbjct: 92 GELYQLSAFTLDNMHSDEIILNTSMPLSANDNDIQEADFGSSNSGR 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,920,689
Number of Sequences: 62578
Number of extensions: 150813
Number of successful extensions: 197
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 62
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)