Query 032759
Match_columns 134
No_of_seqs 156 out of 1329
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0537 Cytochrome b5 [Energy 100.0 7.9E-34 1.7E-38 201.2 5.1 120 4-131 3-122 (124)
2 PF00173 Cyt-b5: Cytochrome b5 99.9 1.6E-25 3.4E-30 144.9 4.6 75 7-81 1-76 (76)
3 KOG0536 Flavohemoprotein b5+b5 99.9 2.4E-23 5.2E-28 147.6 6.8 77 6-82 68-144 (145)
4 PLN03199 delta6-acyl-lipid des 99.8 3.1E-21 6.7E-26 163.1 9.9 80 4-86 22-101 (485)
5 PLN03198 delta6-acyl-lipid des 99.8 1E-21 2.2E-26 167.3 6.4 78 5-84 103-180 (526)
6 COG5274 CYB5 Cytochrome b invo 99.8 4.5E-21 9.7E-26 140.8 5.3 79 5-83 49-127 (164)
7 PLN02252 nitrate reductase [NA 99.8 2.1E-20 4.6E-25 167.0 7.5 81 4-85 516-596 (888)
8 KOG4576 Sulfite oxidase, heme- 99.7 2.1E-17 4.6E-22 117.9 1.9 84 4-87 78-163 (167)
9 KOG4232 Delta 6-fatty acid des 99.6 3.6E-16 7.8E-21 128.8 5.3 78 5-84 7-86 (430)
10 COG4892 Predicted heme/steroid 98.7 2.1E-08 4.5E-13 64.3 4.7 75 6-83 2-78 (81)
11 KOG1110 Putative steroid membr 97.8 0.00011 2.4E-09 55.1 7.9 55 4-60 54-112 (183)
12 KOG1108 Predicted heme/steroid 96.7 0.00092 2E-08 52.2 1.8 56 4-61 58-117 (281)
13 PF14901 Jiv90: Cleavage induc 90.4 0.16 3.5E-06 34.4 1.5 13 25-37 60-72 (94)
14 KOG0720 Molecular chaperone (D 71.0 2.3 5.1E-05 36.4 1.4 15 23-37 380-394 (490)
15 PRK14758 hypothetical protein; 67.2 15 0.00032 19.0 3.4 22 111-132 6-27 (27)
16 COG3424 BcsA Predicted naringe 62.7 4.5 9.8E-05 33.3 1.5 38 39-83 276-314 (356)
17 PRK00159 putative septation in 59.1 30 0.00065 23.1 4.7 19 114-132 36-54 (87)
18 PF06781 UPF0233: Uncharacteri 58.8 26 0.00056 23.3 4.4 20 114-133 36-55 (87)
19 PF11698 V-ATPase_H_C: V-ATPas 58.0 0.67 1.5E-05 32.7 -3.5 27 30-56 65-91 (119)
20 PF02797 Chal_sti_synt_C: Chal 53.8 5 0.00011 29.2 0.4 15 38-52 64-78 (151)
21 TIGR02148 Fibro_Slime fibro-sl 50.5 18 0.00039 24.3 2.6 22 15-36 23-45 (90)
22 PRK02251 putative septation in 48.8 53 0.0012 21.9 4.6 19 114-132 37-55 (87)
23 cd00256 VATPase_H VATPase_H, r 48.2 4 8.6E-05 34.7 -1.0 35 20-56 367-401 (429)
24 PRK06549 acetyl-CoA carboxylas 39.7 22 0.00047 25.3 1.8 14 21-34 4-17 (130)
25 CHL00008 petG cytochrome b6/f 36.7 55 0.0012 18.2 2.7 17 115-131 13-30 (37)
26 PRK00665 petG cytochrome b6-f 36.1 58 0.0013 18.2 2.7 16 115-130 13-29 (37)
27 PHA02131 hypothetical protein 36.1 31 0.00068 21.3 1.8 15 21-35 30-45 (70)
28 PHA02844 putative transmembran 33.0 84 0.0018 20.3 3.5 10 110-119 47-56 (75)
29 PHA02975 hypothetical protein; 32.7 81 0.0018 20.1 3.4 9 111-119 44-52 (69)
30 TIGR03147 cyt_nit_nrfF cytochr 32.6 53 0.0012 23.3 2.8 20 109-128 100-119 (126)
31 PF05521 Phage_H_T_join: Phage 32.1 53 0.0011 20.5 2.6 18 20-37 65-82 (95)
32 PF11044 TMEMspv1-c74-12: Plec 32.1 82 0.0018 18.5 3.1 19 110-128 3-21 (49)
33 PHA02819 hypothetical protein; 32.0 90 0.0019 20.0 3.5 10 110-119 45-54 (71)
34 PF04375 HemX: HemX; InterPro 31.8 1.4E+02 0.003 24.7 5.6 11 120-130 40-50 (372)
35 PHA02650 hypothetical protein; 31.5 85 0.0018 20.6 3.4 10 110-119 48-57 (81)
36 PF12669 P12: Virus attachment 31.1 35 0.00076 20.8 1.5 17 115-131 3-21 (58)
37 KOG2759 Vacuolar H+-ATPase V1 28.7 15 0.00032 31.3 -0.6 33 20-54 380-412 (442)
38 PF02529 PetG: Cytochrome B6-F 28.7 86 0.0019 17.5 2.7 18 115-132 13-31 (37)
39 PHA03054 IMV membrane protein; 27.8 91 0.002 20.0 3.0 10 110-119 47-56 (72)
40 PF06024 DUF912: Nucleopolyhed 27.2 85 0.0019 21.1 3.1 11 120-130 74-84 (101)
41 PF03918 CcmH: Cytochrome C bi 27.1 20 0.00044 26.0 -0.1 21 108-128 99-119 (148)
42 COG3197 FixS Uncharacterized p 25.6 82 0.0018 19.4 2.4 15 114-128 6-20 (58)
43 PF11093 Mitochondr_Som1: Mito 24.8 40 0.00088 22.2 1.0 16 1-16 1-16 (83)
44 COG4858 Uncharacterized membra 24.4 64 0.0014 24.8 2.2 18 116-133 196-214 (226)
45 PF10618 Tail_tube: Phage tail 24.0 61 0.0013 22.5 1.9 25 20-44 7-31 (119)
46 PF13260 DUF4051: Protein of u 22.9 1.5E+02 0.0033 17.6 3.1 14 111-125 5-18 (54)
47 PF04415 DUF515: Protein of un 22.3 1.8E+02 0.004 24.8 4.7 20 113-132 36-55 (416)
48 PF15086 UPF0542: Uncharacteri 22.1 2.1E+02 0.0045 18.5 3.9 22 107-128 22-43 (74)
49 PRK10144 formate-dependent nit 21.2 1.1E+02 0.0024 21.7 2.8 15 109-123 100-114 (126)
50 PF13633 N_methyl_3: Prokaryot 20.7 1.3E+02 0.0028 14.9 2.4 16 111-126 3-18 (22)
51 PF15018 InaF-motif: TRP-inter 20.5 1.8E+02 0.0038 16.3 3.4 21 110-130 9-29 (38)
No 1
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=100.00 E-value=7.9e-34 Score=201.23 Aligned_cols=120 Identities=47% Similarity=0.782 Sum_probs=95.0
Q ss_pred CCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCCC
Q 032759 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 83 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~~ 83 (134)
.++.||.+||++||+.+||||+|+|+|||||+|+++||||.++|+.+||+|+|+.|++.+||.+|++||++|+||.+...
T Consensus 3 ~~k~~~~~EV~kHn~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDaT~~F~~~gHS~~A~~ml~~y~ig~~~~~ 82 (124)
T KOG0537|consen 3 DLKYYTLSEVAKHNKKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDATEAFEDVGHSKDAREMLEEYYIGEVPTT 82 (124)
T ss_pred ccccccHHHHHhhcCCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhhHHhccccCCcHHHHHHhhhcccccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032759 84 TVPRKRAYIPPQQPAYNQDKTPEFIIKILQILVPLLILGLAFAVRHYT 131 (134)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (134)
..+...... ..........+..+.+.++++.+++.++.+.
T Consensus 83 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (124)
T KOG0537|consen 83 ARPVVWSNT--------AGYEVDRLTVSGGLLVAILILPLQEHILGLT 122 (124)
T ss_pred Cccceeccc--------cccccccccccccceeeeeechhhhhhhhcc
Confidence 765543222 1111111222333556666666655555443
No 2
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=99.92 E-value=1.6e-25 Score=144.89 Aligned_cols=75 Identities=49% Similarity=0.921 Sum_probs=69.8
Q ss_pred CcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhc-CeeEEeC
Q 032759 7 IHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDK-YYIGDID 81 (134)
Q Consensus 7 ~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~-~~VG~l~ 81 (134)
+||++||++|++.++|||+|+|+|||||+|+..||||..++..++|+|+|+.|....|+..+.++|+. |+||+|+
T Consensus 1 ~~t~~el~~h~~~~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T~~f~~~~h~~~~~~~l~~~~~vG~ld 76 (76)
T PF00173_consen 1 VYTWEELAKHNKKGDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDATDAFEEAFHSWWAEKCLEKYYKVGYLD 76 (76)
T ss_dssp EEEHHHHTTTEETTEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTHHHHHHHTHHHHHHHHHHGCGEEEEE-
T ss_pred CCCHHHHhhhCCCCCEEEEECCEEcccccccccccchhHHHHHhccccccHHHhhccCcHHHHHHccCCCEEEEeC
Confidence 48999999999999999999999999999999999999999999999999999445699999999998 9999985
No 3
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=99.89 E-value=2.4e-23 Score=147.58 Aligned_cols=77 Identities=36% Similarity=0.672 Sum_probs=73.0
Q ss_pred CCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCC
Q 032759 6 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 82 (134)
Q Consensus 6 ~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~ 82 (134)
..+|.+||++|++.+|||++|+|+|||||.|++.||||.+.|+.++|+|+|..|+.+|-..+-.++|+.+.||.+.+
T Consensus 68 i~vt~~El~KH~~~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T~~Fnk~H~WVN~e~LL~~c~VGvl~d 144 (145)
T KOG0536|consen 68 IPVTAEELKKHNKKDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDATKLFNKYHAWVNYEELLKKCFVGVLVD 144 (145)
T ss_pred CccCHHHHHhhCCccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchHHHHHHHHHHhcHHHHHhhceeeeecc
Confidence 46899999999999999999999999999999999999999999999999999999877788889999999998864
No 4
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.85 E-value=3.1e-21 Score=163.06 Aligned_cols=80 Identities=39% Similarity=0.796 Sum_probs=73.5
Q ss_pred CCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCCC
Q 032759 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 83 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~~ 83 (134)
..+.+|++||++|+++++|||+|+|+|||||+|+ +||||. +|+.++|+|+|+.|+.. |+..++++|++|+||+++++
T Consensus 22 ~~~~~s~~ev~~h~~~~~~wi~i~g~vYDvt~f~-~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~iG~l~~~ 98 (485)
T PLN03199 22 KPQKISWQEVKKHASPDDAWIIHQNKVYDVSNWH-DHPGGA-VIFTHAGDDMTDIFAAF-HAPGSQALMKKFYIGDLIPE 98 (485)
T ss_pred cCCccCHHHHHhhCCCCCeEEEECCEEEcCCCcC-cCCCch-HHHhhCCCChhHHHHHh-cCHHHHHHHHhccccccccc
Confidence 4678999999999999999999999999999997 899998 78899999999999985 99999999999999999765
Q ss_pred CCC
Q 032759 84 TVP 86 (134)
Q Consensus 84 ~~~ 86 (134)
+.+
T Consensus 99 ~~~ 101 (485)
T PLN03199 99 STE 101 (485)
T ss_pred ccc
Confidence 543
No 5
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.85 E-value=1e-21 Score=167.33 Aligned_cols=78 Identities=45% Similarity=0.907 Sum_probs=73.0
Q ss_pred CCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCCCC
Q 032759 5 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPST 84 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~~~ 84 (134)
.+.||++|+++|++.+||||+|+|+|||||+|+++||||. +|..++|+|+|+.|+.. |+..+.++|++|+||+++..+
T Consensus 103 ~~~~t~~ev~~H~~~~d~Wivi~gkVYDvT~fl~~HPGG~-~i~~~aG~DaT~~F~~~-H~~~~~~~l~~~~IG~l~~~~ 180 (526)
T PLN03198 103 SKSHLLSEVAAHNKPNDCWIVIKNKVYDVSDFAAEHPGGS-VISTYFGRDGTDAFSSF-HAASTWKILQDFYIGDVDNVE 180 (526)
T ss_pred cCcCCHHHHHhhCCCCCeEEEECCEEEecHHHHHhCCCch-HHHHhcCCcHhHHHHHh-cCHHHHHHHhhCcceecCCcc
Confidence 3599999999999999999999999999999999999998 89999999999999986 999999999999999997643
No 6
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=99.83 E-value=4.5e-21 Score=140.76 Aligned_cols=79 Identities=44% Similarity=0.894 Sum_probs=75.7
Q ss_pred CCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCCC
Q 032759 5 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 83 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~~ 83 (134)
.+.++.+||.+|++.++|||+|+|+|||||.|+++||||.++|+.++|+|+|+.|...+|+..+.++++.++||.+...
T Consensus 49 ~~~~~~eev~~h~~~~d~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat~~f~~~~~~~~~~~llk~~yv~~v~r~ 127 (164)
T COG5274 49 PKPITAEEVAKHNKSEDCWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDATKAFNFLHHSHQIGNLLKDVYVDQVHRP 127 (164)
T ss_pred cccccHHHHHHhcCccceEEEEcCEEEEhhhccccCCCcceeehhccCchhhhhhcccccchhHHhhhhceeeecccCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999999765
No 7
>PLN02252 nitrate reductase [NADPH]
Probab=99.82 E-value=2.1e-20 Score=167.00 Aligned_cols=81 Identities=36% Similarity=0.843 Sum_probs=76.3
Q ss_pred CCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCCC
Q 032759 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDPS 83 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~~ 83 (134)
..+.||++||++|++.++|||+|+|+|||+|+|++.||||.++|+.++|+|+|+.|+.+ |+..|+++|++|+||+|...
T Consensus 516 ~~~~~t~~ev~~h~~~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~DaT~~F~~~-Hs~~a~~~L~~~~IG~l~~~ 594 (888)
T PLN02252 516 GSKQYTMSEVRKHNSEDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELVTT 594 (888)
T ss_pred ccceeCHHHHHhhCcCCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCCcHHHHhhh-hhHHHHHHHHhCcCCccccc
Confidence 35789999999999999999999999999999999999999999999999999999986 99999999999999999766
Q ss_pred CC
Q 032759 84 TV 85 (134)
Q Consensus 84 ~~ 85 (134)
..
T Consensus 595 ~~ 596 (888)
T PLN02252 595 GA 596 (888)
T ss_pred cc
Confidence 54
No 8
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=99.66 E-value=2.1e-17 Score=117.89 Aligned_cols=84 Identities=32% Similarity=0.609 Sum_probs=73.8
Q ss_pred CCCCcCHHHHhcccCCC-CeEEEEcCEEEeccccCCCCCChHHHHHHhhCC-CCchhhhhcCCCHHHHHhhhcCeeEEeC
Q 032759 4 DPKIHQFEEVATHNKTK-DCWLIISGKVYDVSSFMDDHPGGDEVLISATGK-DATNDFEDVGHSDSAREMMDKYYIGDID 81 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~-~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~-D~T~~f~~~~Hs~~a~~~l~~~~VG~l~ 81 (134)
.+++|+.+||++|+++. ..||.+...|||||+|++.||||+++++.+.|. |..+.....|.+..++++|+.|+||+++
T Consensus 78 ~l~iY~~EEV~~H~s~e~rIWVTyg~gVyDVTdFv~~HPGGdKillAAG~a~dPFWalY~qHnt~eVlElLegyrIG~L~ 157 (167)
T KOG4576|consen 78 SLHIYTKEEVSSHTSPETRIWVTYGSGVYDVTDFVDLHPGGDKILLAAGGALDPFWALYAQHNTSEVLELLEGYRIGELN 157 (167)
T ss_pred hccchhHHHHHhcCCCccceEEEecCcceeHHHHHHhCCCcceeeeecCCCcCcHHHHHHHhhHHHHHHHHhhcccccCC
Confidence 47899999999999876 599999999999999999999998888766554 8788878778888999999999999999
Q ss_pred CCCCCC
Q 032759 82 PSTVPR 87 (134)
Q Consensus 82 ~~~~~~ 87 (134)
+.+++.
T Consensus 158 ~~dv~~ 163 (167)
T KOG4576|consen 158 PEDVVA 163 (167)
T ss_pred hhhccc
Confidence 887654
No 9
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.62 E-value=3.6e-16 Score=128.79 Aligned_cols=78 Identities=36% Similarity=0.761 Sum_probs=71.2
Q ss_pred CCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHH--HHHhhhcCeeEEeCC
Q 032759 5 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDS--AREMMDKYYIGDIDP 82 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~--a~~~l~~~~VG~l~~ 82 (134)
.+++|++++++|++.++.|++|+| |||+|+|+.+||||+.+|..++|+|+|++|.+. |... +.+.|+.+.+|...+
T Consensus 7 ~~~~~we~~~~~~~~~~~W~~id~-vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~Af-H~~~~~~~~~l~~l~~~~~~p 84 (430)
T KOG4232|consen 7 PTTFSWEGKRKHDKAEGLWLVIDG-VYDISDWIKRHPGGSRVIEHYAGQDATDAFEAF-HPGTAFAYKHLKPLLIGELSP 84 (430)
T ss_pred ceeeeccchhhccCCCceEEEeec-cccHHHHHHhCCCchhHHHHhcCCccchHHHHh-CCChHHHHHHHHHHHcCCcCc
Confidence 458999999999999999999999 999999999999999999999999999999984 7665 778999999999876
Q ss_pred CC
Q 032759 83 ST 84 (134)
Q Consensus 83 ~~ 84 (134)
+.
T Consensus 85 e~ 86 (430)
T KOG4232|consen 85 EI 86 (430)
T ss_pred cc
Confidence 54
No 10
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=98.73 E-value=2.1e-08 Score=64.29 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=55.5
Q ss_pred CCcCHHHHhcccCCC-CeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhh-cCCCHHHHHhhhcCeeEEeCCC
Q 032759 6 KIHQFEEVATHNKTK-DCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFED-VGHSDSAREMMDKYYIGDIDPS 83 (134)
Q Consensus 6 ~~~t~~ev~~h~~~~-~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~-~~Hs~~a~~~l~~~~VG~l~~~ 83 (134)
+.||.+|+.+.|.++ ..+|.++|.||||+.-- ..-+|..--+.-+|+|+|++|++ ..|-.+..+-++. ||.|..+
T Consensus 2 refTLEELs~ynG~nGpaYiA~~G~VYDvS~s~-~W~dGtHqglhsaG~DLs~~~~~~aphg~eil~~~Pv--VG~L~k~ 78 (81)
T COG4892 2 REFTLEELSKYNGENGPAYIAVNGTVYDVSLSP-SWGDGTHQGLHSAGKDLSSEFNSCAPHGMEILTSLPV--VGALIKE 78 (81)
T ss_pred ceecHHHHHhhcCCCCCeEEEECCEEEeeccCc-ccCCCccccccccchhHHHHHhhcCCchhHHHhcCch--hheeecc
Confidence 679999999988765 69999999999998632 12344444456689999999984 4566666665554 7887543
No 11
>KOG1110 consensus Putative steroid membrane receptor Hpr6.6/25-Dx [General function prediction only]
Probab=97.84 E-value=0.00011 Score=55.08 Aligned_cols=55 Identities=31% Similarity=0.375 Sum_probs=42.3
Q ss_pred CCCCcCHHHHhcccCCC---CeEEEEcCEEEeccc-cCCCCCChHHHHHHhhCCCCchhhh
Q 032759 4 DPKIHQFEEVATHNKTK---DCWLIISGKVYDVSS-FMDDHPGGDEVLISATGKDATNDFE 60 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~---~~wvvi~g~VYDvt~-f~~~HPGG~~~l~~~aG~D~T~~f~ 60 (134)
..+.||.+||.+.+..+ ..++.|+|+|||||. -.-.-|||.- -.+||+|++....
T Consensus 54 ~~~dfT~eEL~~ydGs~~d~~Il~AI~G~VYDVT~Gr~FYGp~GpY--~~fAG~DASR~La 112 (183)
T KOG1110|consen 54 KVRDFTVEELRQYDGSDPDKPILLAINGKVYDVTRGREFYGPGGPY--SLFAGKDASRGLA 112 (183)
T ss_pred cccccCHHHHHhcCCCCCCCceEEEecceEEEecCCccccCCCCCc--hhhcccchHHHHH
Confidence 34589999999987765 488999999999985 2235788864 3468999998754
No 12
>KOG1108 consensus Predicted heme/steroid binding protein [General function prediction only]
Probab=96.67 E-value=0.00092 Score=52.16 Aligned_cols=56 Identities=32% Similarity=0.381 Sum_probs=43.1
Q ss_pred CCCCcCHHHHhcccCCC---CeEEEEcCEEEeccccC-CCCCChHHHHHHhhCCCCchhhhh
Q 032759 4 DPKIHQFEEVATHNKTK---DCWLIISGKVYDVSSFM-DDHPGGDEVLISATGKDATNDFED 61 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~---~~wvvi~g~VYDvt~f~-~~HPGG~~~l~~~aG~D~T~~f~~ 61 (134)
....||++||+..|... ..++.|-|.||||+.=. ..-||+ -...+||+|+|.+|-.
T Consensus 58 ~k~lFtpeeLa~fnGt~e~~piyLaiLGsVfdVs~gk~hYgsG~--sYnhFaGRDASrAFvs 117 (281)
T KOG1108|consen 58 DKILFTPEELAKFNGTEEGRPIYLAILGSVFDVSRGKKHYGSGC--SYNHFAGRDASRAFVS 117 (281)
T ss_pred CceeeCHHHHhhccCCCCCCceeeeeeceeeeccCCeeeeCCCC--Ccccccccccchheec
Confidence 45689999999987654 38899999999998743 233443 4568899999999853
No 13
>PF14901 Jiv90: Cleavage inducing molecular chaperone
Probab=90.39 E-value=0.16 Score=34.39 Aligned_cols=13 Identities=38% Similarity=0.905 Sum_probs=11.6
Q ss_pred EEcCEEEeccccC
Q 032759 25 IISGKVYDVSSFM 37 (134)
Q Consensus 25 vi~g~VYDvt~f~ 37 (134)
..+|+|||||+|+
T Consensus 60 c~~g~VyDiTeWA 72 (94)
T PF14901_consen 60 CMDGKVYDITEWA 72 (94)
T ss_pred EcCceEEehhhhh
Confidence 4699999999997
No 14
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.04 E-value=2.3 Score=36.43 Aligned_cols=15 Identities=33% Similarity=0.849 Sum_probs=12.8
Q ss_pred EEEEcCEEEeccccC
Q 032759 23 WLIISGKVYDVSSFM 37 (134)
Q Consensus 23 wvvi~g~VYDvt~f~ 37 (134)
+++-||+|||+|+|+
T Consensus 380 y~c~DgkVYDITeWA 394 (490)
T KOG0720|consen 380 YACMDGKVYDITEWA 394 (490)
T ss_pred eeecCCceEeehhhh
Confidence 346699999999998
No 15
>PRK14758 hypothetical protein; Provisional
Probab=67.19 E-value=15 Score=19.04 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 032759 111 ILQILVPLLILGLAFAVRHYTK 132 (134)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~ 132 (134)
.+.++..++|+...+|.++|++
T Consensus 6 rFEliLivlIlCalia~~fy~s 27 (27)
T PRK14758 6 RFEFILIILILCALIAARFYLS 27 (27)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4556666677777788887753
No 16
>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=62.67 E-value=4.5 Score=33.29 Aligned_cols=38 Identities=16% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCCChHHHHHHhhCC-CCchhhhhcCCCHHHHHhhhcCeeEEeCCC
Q 032759 39 DHPGGDEVLISATGK-DATNDFEDVGHSDSAREMMDKYYIGDIDPS 83 (134)
Q Consensus 39 ~HPGG~~~l~~~aG~-D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~~ 83 (134)
-||||.++|.++.+. .+++..- ...+..|++ .|++...
T Consensus 276 ~HPGG~KVida~~~sLgls~e~l-----~~s~~~L~~--~GNMSSa 314 (356)
T COG3424 276 VHPGGPKVIDAYEESLGLSPEAL-----ELSWDVLRE--YGNMSSA 314 (356)
T ss_pred eCCCCchHHHHHHHhcCCCHHHH-----HHHHHHHHH--hCCccch
Confidence 599999999988754 4443321 123455555 5665443
No 17
>PRK00159 putative septation inhibitor protein; Reviewed
Probab=59.07 E-value=30 Score=23.08 Aligned_cols=19 Identities=32% Similarity=0.742 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 032759 114 ILVPLLILGLAFAVRHYTK 132 (134)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~ 132 (134)
.++.+.++|++..+.||+.
T Consensus 36 ~m~glm~~GllWlvvyYl~ 54 (87)
T PRK00159 36 LMLGLMLIGLAWLVVNYLA 54 (87)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4456668888888777765
No 18
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=58.78 E-value=26 Score=23.34 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 032759 114 ILVPLLILGLAFAVRHYTKK 133 (134)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~ 133 (134)
.++.+.++|++-.+.||+..
T Consensus 36 ~m~~lmllGL~WiVvyYi~~ 55 (87)
T PF06781_consen 36 LMLGLMLLGLLWIVVYYISG 55 (87)
T ss_pred HHHHHHHHHHHHHhhhhccc
Confidence 44566688887777777653
No 19
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.96 E-value=0.67 Score=32.68 Aligned_cols=27 Identities=19% Similarity=0.429 Sum_probs=22.0
Q ss_pred EEeccccCCCCCChHHHHHHhhCCCCc
Q 032759 30 VYDVSSFMDDHPGGDEVLISATGKDAT 56 (134)
Q Consensus 30 VYDvt~f~~~HPGG~~~l~~~aG~D~T 56 (134)
-+|+..|+..||.|..++....+|+.-
T Consensus 65 c~Dig~~vr~~p~gr~ii~~lg~K~~v 91 (119)
T PF11698_consen 65 CHDIGEFVRHYPNGRNIIEKLGAKERV 91 (119)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHSHHHHH
T ss_pred hcchHHHHHHChhHHHHHHhcChHHHH
Confidence 379999999999999999888777543
No 20
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=53.82 E-value=5 Score=29.15 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=11.2
Q ss_pred CCCCChHHHHHHhhC
Q 032759 38 DDHPGGDEVLISATG 52 (134)
Q Consensus 38 ~~HPGG~~~l~~~aG 52 (134)
.-||||.++|.....
T Consensus 64 avHPGG~~ILd~v~~ 78 (151)
T PF02797_consen 64 AVHPGGRKILDAVEE 78 (151)
T ss_dssp EEE-SSHHHHHHHHH
T ss_pred eecCChHHHHHHHHH
Confidence 469999999987764
No 21
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=50.49 E-value=18 Score=24.29 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=16.8
Q ss_pred cccCCCCeEEEEcCE-EEecccc
Q 032759 15 THNKTKDCWLIISGK-VYDVSSF 36 (134)
Q Consensus 15 ~h~~~~~~wvvi~g~-VYDvt~f 36 (134)
+-...+|.||-|+|+ |-|+-..
T Consensus 23 ~F~GDDDvWVFIn~kLv~DlGG~ 45 (90)
T TIGR02148 23 EFRGDDDVWVFINNKLVVDIGGQ 45 (90)
T ss_pred EEEcCCeEEEEECCEEEEEccCc
Confidence 345778999999998 6777654
No 22
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=48.84 E-value=53 Score=21.89 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 032759 114 ILVPLLILGLAFAVRHYTK 132 (134)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~ 132 (134)
.++.+.++|++..+.||+.
T Consensus 37 ~m~~lm~~Gl~WlvvyYl~ 55 (87)
T PRK02251 37 LFVALMIIGLIWLVVYYLS 55 (87)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4456668888888888764
No 23
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=48.23 E-value=4 Score=34.74 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=28.7
Q ss_pred CCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCc
Q 032759 20 KDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDAT 56 (134)
Q Consensus 20 ~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T 56 (134)
+..++.|- -+|+..|+..||.|..++....||+.-
T Consensus 367 d~~~laVA--c~Dige~vr~~P~gr~i~~~lg~K~~v 401 (429)
T cd00256 367 DPIILAVA--CHDIGEYVRHYPRGKDVVEQLGGKQRV 401 (429)
T ss_pred Ccceeehh--hhhHHHHHHHCccHHHHHHHcCcHHHH
Confidence 45666665 489999999999999999998888653
No 24
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=39.73 E-value=22 Score=25.31 Aligned_cols=14 Identities=36% Similarity=0.435 Sum_probs=11.8
Q ss_pred CeEEEEcCEEEecc
Q 032759 21 DCWLIISGKVYDVS 34 (134)
Q Consensus 21 ~~wvvi~g~VYDvt 34 (134)
.+-|.+||++|||+
T Consensus 4 ~~~itvng~~y~V~ 17 (130)
T PRK06549 4 KFKITIDGKEYLVE 17 (130)
T ss_pred eEEEEECCEEEEEE
Confidence 35688999999996
No 25
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=36.69 E-value=55 Score=18.24 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHH-Hhh
Q 032759 115 LVPLLILGLAFAVR-HYT 131 (134)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~ 131 (134)
+||+.++|+.++.| .|-
T Consensus 13 lipvTl~GlfvaAylQYr 30 (37)
T CHL00008 13 LIPITLAGLFVTAYLQYR 30 (37)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 47888888877766 443
No 26
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=36.08 E-value=58 Score=18.16 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH-Hh
Q 032759 115 LVPLLILGLAFAVR-HY 130 (134)
Q Consensus 115 ~~~~~~~~~~~~~~-~~ 130 (134)
+||+.++|+.++.| .|
T Consensus 13 lipiTl~GlfvaAylQY 29 (37)
T PRK00665 13 LIPVTLAGLFVAAWNQY 29 (37)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 47888888877766 44
No 27
>PHA02131 hypothetical protein
Probab=36.06 E-value=31 Score=21.29 Aligned_cols=15 Identities=27% Similarity=0.913 Sum_probs=12.4
Q ss_pred CeEEEE-cCEEEeccc
Q 032759 21 DCWLII-SGKVYDVSS 35 (134)
Q Consensus 21 ~~wvvi-~g~VYDvt~ 35 (134)
.||+.+ +|+|-|+|=
T Consensus 30 ~c~imfk~~~v~dctf 45 (70)
T PHA02131 30 SCWIMFKNDQVIDCTF 45 (70)
T ss_pred EEEEEEcCCCEEEeee
Confidence 599987 789999873
No 28
>PHA02844 putative transmembrane protein; Provisional
Probab=33.02 E-value=84 Score=20.34 Aligned_cols=10 Identities=0% Similarity=0.135 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 032759 110 KILQILVPLL 119 (134)
Q Consensus 110 ~~~~~~~~~~ 119 (134)
.|..|++.++
T Consensus 47 ~~~~~ii~i~ 56 (75)
T PHA02844 47 STKIWILTII 56 (75)
T ss_pred hHHHHHHHHH
Confidence 3444444444
No 29
>PHA02975 hypothetical protein; Provisional
Probab=32.68 E-value=81 Score=20.09 Aligned_cols=9 Identities=0% Similarity=0.357 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 032759 111 ILQILVPLL 119 (134)
Q Consensus 111 ~~~~~~~~~ 119 (134)
|..+++.++
T Consensus 44 ~~~~ii~i~ 52 (69)
T PHA02975 44 SIILIIFII 52 (69)
T ss_pred HHHHHHHHH
Confidence 343444433
No 30
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=32.59 E-value=53 Score=23.33 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032759 109 IKILQILVPLLILGLAFAVR 128 (134)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~ 128 (134)
.+|.-|+.|+++++++.++.
T Consensus 100 ~t~~LW~~P~lll~~G~~~~ 119 (126)
T TIGR03147 100 QTLLLWLLPVLLLLLAFVLL 119 (126)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 35778999998766554433
No 31
>PF05521 Phage_H_T_join: Phage head-tail joining protein ; InterPro: IPR008767 This entry describes the head-tail adaptor protein of bacteriophage SPP1 and related proteins in other bacteriophage and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg7 (RCAP_rcc01689) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2KCA_A 2KZ4_A.
Probab=32.14 E-value=53 Score=20.46 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=12.7
Q ss_pred CCeEEEEcCEEEeccccC
Q 032759 20 KDCWLIISGKVYDVSSFM 37 (134)
Q Consensus 20 ~~~wvvi~g~VYDvt~f~ 37 (134)
.+..|.++|++|+|....
T Consensus 65 ~~~ri~~~g~~y~I~~i~ 82 (95)
T PF05521_consen 65 PDMRIKYDGKVYNIKSID 82 (95)
T ss_dssp TTEEEEECTEEEEE-S--
T ss_pred cceEEEECCEEEEEEEEC
Confidence 356788999999998843
No 32
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=32.08 E-value=82 Score=18.46 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032759 110 KILQILVPLLILGLAFAVR 128 (134)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~ 128 (134)
.|..+++.++|+...|++.
T Consensus 3 ~wlt~iFsvvIil~If~~i 21 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFAWI 21 (49)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3666777777555555544
No 33
>PHA02819 hypothetical protein; Provisional
Probab=32.03 E-value=90 Score=20.00 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 032759 110 KILQILVPLL 119 (134)
Q Consensus 110 ~~~~~~~~~~ 119 (134)
.|..+++.++
T Consensus 45 ~~~~~ii~l~ 54 (71)
T PHA02819 45 LRYYLIIGLV 54 (71)
T ss_pred hHHHHHHHHH
Confidence 3444444444
No 34
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=31.77 E-value=1.4e+02 Score=24.72 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=5.9
Q ss_pred HHHHHHHHHHh
Q 032759 120 ILGLAFAVRHY 130 (134)
Q Consensus 120 ~~~~~~~~~~~ 130 (134)
+++++.+++||
T Consensus 40 ~~alg~~~~~~ 50 (372)
T PF04375_consen 40 ALALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHHH
Confidence 34555556655
No 35
>PHA02650 hypothetical protein; Provisional
Probab=31.48 E-value=85 Score=20.59 Aligned_cols=10 Identities=0% Similarity=0.062 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 032759 110 KILQILVPLL 119 (134)
Q Consensus 110 ~~~~~~~~~~ 119 (134)
.|..+++.++
T Consensus 48 ~~~~~ii~i~ 57 (81)
T PHA02650 48 NGQNFIFLIF 57 (81)
T ss_pred hHHHHHHHHH
Confidence 3444444443
No 36
>PF12669 P12: Virus attachment protein p12 family
Probab=31.08 E-value=35 Score=20.77 Aligned_cols=17 Identities=29% Similarity=0.843 Sum_probs=7.0
Q ss_pred HHHHHHHH-HHH-HHHHhh
Q 032759 115 LVPLLILG-LAF-AVRHYT 131 (134)
Q Consensus 115 ~~~~~~~~-~~~-~~~~~~ 131 (134)
+|.+++++ ++| +++++.
T Consensus 3 II~~Ii~~~~~~v~~r~~~ 21 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFI 21 (58)
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 34444333 333 335444
No 37
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=28.69 E-value=15 Score=31.35 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=28.0
Q ss_pred CCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCC
Q 032759 20 KDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKD 54 (134)
Q Consensus 20 ~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D 54 (134)
+..|+++- -.|++.|+..||-|..++.++.||.
T Consensus 380 Dp~iL~VA--c~DIge~Vr~yP~gk~vv~k~ggKe 412 (442)
T KOG2759|consen 380 DPIILCVA--CHDIGEYVRHYPEGKAVVEKYGGKE 412 (442)
T ss_pred CCceeehh--hhhHHHHHHhCchHhHHHHHhchHH
Confidence 45677665 3799999999999999999999983
No 38
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=28.68 E-value=86 Score=17.52 Aligned_cols=18 Identities=33% Similarity=0.693 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH-Hhhc
Q 032759 115 LVPLLILGLAFAVR-HYTK 132 (134)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~~ 132 (134)
++|+.++|+.++.| .|.+
T Consensus 13 li~vtl~Glfv~Ay~QY~R 31 (37)
T PF02529_consen 13 LIPVTLAGLFVAAYLQYRR 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHhc
Confidence 46777788766655 5543
No 39
>PHA03054 IMV membrane protein; Provisional
Probab=27.83 E-value=91 Score=19.99 Aligned_cols=10 Identities=0% Similarity=0.152 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 032759 110 KILQILVPLL 119 (134)
Q Consensus 110 ~~~~~~~~~~ 119 (134)
.|..+++.++
T Consensus 47 ~~~~~ii~l~ 56 (72)
T PHA03054 47 GWYWLIIIFF 56 (72)
T ss_pred hHHHHHHHHH
Confidence 3444444444
No 40
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=27.18 E-value=85 Score=21.08 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=5.7
Q ss_pred HHHHHHHHHHh
Q 032759 120 ILGLAFAVRHY 130 (134)
Q Consensus 120 ~~~~~~~~~~~ 130 (134)
++++.++++|+
T Consensus 74 IlVily~IyYF 84 (101)
T PF06024_consen 74 ILVILYAIYYF 84 (101)
T ss_pred HHHHHhhheEE
Confidence 44455555544
No 41
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=27.09 E-value=20 Score=26.00 Aligned_cols=21 Identities=33% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032759 108 IIKILQILVPLLILGLAFAVR 128 (134)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~ 128 (134)
+.+|.-|+.|++++++++++.
T Consensus 99 ~~~~~lW~~P~~~l~~g~~~~ 119 (148)
T PF03918_consen 99 GFTWLLWLGPFLLLLLGGALL 119 (148)
T ss_dssp ---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 346778999999777655544
No 42
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=25.64 E-value=82 Score=19.41 Aligned_cols=15 Identities=40% Similarity=0.476 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q 032759 114 ILVPLLILGLAFAVR 128 (134)
Q Consensus 114 ~~~~~~~~~~~~~~~ 128 (134)
+++|+.++.+++++.
T Consensus 6 ~Lipvsi~l~~v~l~ 20 (58)
T COG3197 6 ILIPVSILLGAVGLG 20 (58)
T ss_pred eHHHHHHHHHHHHHH
Confidence 567888666655544
No 43
>PF11093 Mitochondr_Som1: Mitochondrial export protein Som1; InterPro: IPR024645 Som1 is a component of the mitochondrial protein export system. Som1 proteins exhibit a highly conserved region and a pattern of cysteine residues []. Stabilisation of Som1 occurs through an interaction between Som1 and Imp1, a peptidase required for proteolytic processing of certain proteins during their transport across the mitochondrial membrane []. This suggests that Som1 represents a third subunit of the Imp1 peptidase complex [].; GO: 0042720 mitochondrial inner membrane peptidase complex
Probab=24.81 E-value=40 Score=22.18 Aligned_cols=16 Identities=19% Similarity=0.303 Sum_probs=14.8
Q ss_pred CCCCCCCcCHHHHhcc
Q 032759 1 MASDPKIHQFEEVATH 16 (134)
Q Consensus 1 m~~~~~~~t~~ev~~h 16 (134)
|++..++|+.+|+..|
T Consensus 1 MAPP~pV~~~~el~~~ 16 (83)
T PF11093_consen 1 MAPPTPVFSRSELPSQ 16 (83)
T ss_pred CCCCcceEcHHHhHHH
Confidence 8999999999999976
No 44
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=24.41 E-value=64 Score=24.84 Aligned_cols=18 Identities=44% Similarity=0.818 Sum_probs=12.3
Q ss_pred HHHHHHH-HHHHHHHhhcC
Q 032759 116 VPLLILG-LAFAVRHYTKK 133 (134)
Q Consensus 116 ~~~~~~~-~~~~~~~~~~~ 133 (134)
++++|.| +++|+|||+++
T Consensus 196 i~l~IiGav~lalRfylkk 214 (226)
T COG4858 196 IALTIIGAVILALRFYLKK 214 (226)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555 68899998875
No 45
>PF10618 Tail_tube: Phage tail tube protein; InterPro: IPR019596 This entry is represented by Bacteriophage Mu, GpM tail tube protein. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.
Probab=23.95 E-value=61 Score=22.54 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCeEEEEcCEEEeccccCCCCCChH
Q 032759 20 KDCWLIISGKVYDVSSFMDDHPGGD 44 (134)
Q Consensus 20 ~~~wvvi~g~VYDvt~f~~~HPGG~ 44 (134)
+.|+|.|+|+-|++.+=....|||.
T Consensus 7 G~a~i~vdG~~l~~~~g~~~~~gg~ 31 (119)
T PF10618_consen 7 GTAYIRVDGQQLPVKGGATYNPGGV 31 (119)
T ss_pred EEEEEEECCEEEEccCCeEECCCCe
Confidence 5689999999999997788888874
No 46
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=22.88 E-value=1.5e+02 Score=17.61 Aligned_cols=14 Identities=7% Similarity=0.325 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 032759 111 ILQILVPLLILGLAF 125 (134)
Q Consensus 111 ~~~~~~~~~~~~~~~ 125 (134)
|+ |+|.++++++.|
T Consensus 5 wy-wivli~lv~~gy 18 (54)
T PF13260_consen 5 WY-WIVLIVLVVVGY 18 (54)
T ss_pred HH-HHHHHHHHHHHH
Confidence 44 566555544433
No 47
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=22.31 E-value=1.8e+02 Score=24.82 Aligned_cols=20 Identities=5% Similarity=0.323 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 032759 113 QILVPLLILGLAFAVRHYTK 132 (134)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~ 132 (134)
..++.+++++++|+.|+++.
T Consensus 36 a~Vl~iIii~~~~~~Y~~~~ 55 (416)
T PF04415_consen 36 AAVLIIIIIFIVYNIYYFLQ 55 (416)
T ss_pred hhhHhHHHHHHHHHHHHHhh
Confidence 33455556667777776654
No 48
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=22.10 E-value=2.1e+02 Score=18.49 Aligned_cols=22 Identities=32% Similarity=0.692 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032759 107 FIIKILQILVPLLILGLAFAVR 128 (134)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~ 128 (134)
+..+.+.++.|++++.+.+++.
T Consensus 22 Fl~~vll~LtPlfiisa~lSwk 43 (74)
T PF15086_consen 22 FLTTVLLILTPLFIISAVLSWK 43 (74)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666778888877766554
No 49
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=21.22 E-value=1.1e+02 Score=21.72 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 032759 109 IKILQILVPLLILGL 123 (134)
Q Consensus 109 ~~~~~~~~~~~~~~~ 123 (134)
.+|.-|+.|++++++
T Consensus 100 ~t~~LW~~P~~lll~ 114 (126)
T PRK10144 100 QTLVLWALPVVLLLL 114 (126)
T ss_pred chHHHHHHHHHHHHH
Confidence 357889999885554
No 50
>PF13633 N_methyl_3: Prokaryotic N-terminal methylation site
Probab=20.74 E-value=1.3e+02 Score=14.87 Aligned_cols=16 Identities=25% Similarity=0.669 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 032759 111 ILQILVPLLILGLAFA 126 (134)
Q Consensus 111 ~~~~~~~~~~~~~~~~ 126 (134)
++..++.++++++..+
T Consensus 3 LIEvlIa~~i~~i~~~ 18 (22)
T PF13633_consen 3 LIEVLIAIAILGILAL 18 (22)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677776665443
No 51
>PF15018 InaF-motif: TRP-interacting helix
Probab=20.54 E-value=1.8e+02 Score=16.35 Aligned_cols=21 Identities=5% Similarity=0.236 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032759 110 KILQILVPLLILGLAFAVRHY 130 (134)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~ 130 (134)
....++..+.++|+.++++|.
T Consensus 9 tV~~Yl~~VSl~Ai~LsiYY~ 29 (38)
T PF15018_consen 9 TVVAYLFSVSLAAIVLSIYYI 29 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555566666666654
Done!