Query 032760
Match_columns 134
No_of_seqs 107 out of 321
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 08:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Y RP50, 40S ribosomal pro 100.0 1.5E-59 5.3E-64 352.9 11.9 131 1-133 1-132 (135)
2 2xzm_P RPS24E; ribosome, trans 100.0 1.3E-57 4.6E-62 346.8 12.0 129 5-134 2-130 (149)
3 3iz6_U 40S ribosomal protein S 100.0 1E-59 3.4E-64 354.9 -0.1 130 5-134 9-138 (138)
4 2v94_A RPS24, 30S ribosomal pr 100.0 2.8E-45 9.6E-50 266.2 11.9 97 5-102 8-104 (107)
5 2g1d_A 30S ribosomal protein S 100.0 5.3E-45 1.8E-49 261.2 9.7 95 7-102 2-96 (98)
6 1xn9_A 30S ribosomal protein S 100.0 8.3E-44 2.8E-48 256.2 11.7 93 7-101 2-94 (101)
7 1ywx_A 30S ribosomal protein S 100.0 2.1E-43 7E-48 254.6 12.2 93 7-101 2-94 (102)
8 2dgw_A Probable RNA-binding pr 80.3 8.5 0.00029 24.1 6.9 45 34-86 20-65 (91)
9 2cpf_A RNA binding motif prote 70.1 18 0.0006 22.8 7.3 50 34-86 15-65 (98)
10 3p5t_L Cleavage and polyadenyl 69.8 11 0.00039 23.7 5.4 48 34-86 11-60 (90)
11 2dng_A Eukaryotic translation 65.5 11 0.00037 24.2 4.7 54 26-87 18-72 (103)
12 2dnh_A Bruno-like 5, RNA bindi 64.9 19 0.00064 23.0 5.8 46 34-86 25-71 (105)
13 2d9p_A Polyadenylate-binding p 64.2 12 0.00042 23.9 4.7 45 34-86 25-70 (103)
14 2cpz_A CUG triplet repeat RNA- 64.2 24 0.00082 23.0 6.3 47 34-86 35-82 (115)
15 2dhg_A TRNA selenocysteine ass 63.6 26 0.00087 22.3 8.5 47 34-86 19-66 (104)
16 3ue2_A Poly(U)-binding-splicin 62.8 12 0.00042 25.7 4.8 46 38-85 39-85 (118)
17 2cpx_A Hypothetical protein FL 61.7 9.9 0.00034 24.8 3.9 47 34-86 35-82 (115)
18 3nmr_A Cugbp ELAV-like family 60.9 30 0.001 23.4 6.5 49 34-86 13-62 (175)
19 2dha_A FLJ20171 protein; RRM d 60.6 26 0.0009 24.1 6.2 54 25-85 25-82 (123)
20 1p1t_A Cleavage stimulation fa 59.8 30 0.001 21.9 6.5 47 34-86 18-65 (104)
21 2dh8_A DAZ-associated protein 58.9 32 0.0011 21.9 6.0 47 34-86 26-73 (105)
22 3dxb_A Thioredoxin N-terminall 58.6 11 0.00039 27.6 4.2 30 56-85 159-189 (222)
23 3ulh_A THO complex subunit 4; 56.9 35 0.0012 21.7 6.5 46 34-86 39-85 (107)
24 2lxi_A RNA-binding protein 10; 56.6 22 0.00074 22.7 4.8 48 34-86 11-59 (91)
25 1p27_B RNA-binding protein 8A; 55.8 37 0.0013 21.6 8.6 47 34-86 33-80 (106)
26 2io0_B Small ubiquitin-related 54.2 44 0.0015 22.1 6.5 51 1-61 1-51 (91)
27 2dgv_A HnRNP M, heterogeneous 53.2 37 0.0013 20.9 6.2 45 34-86 18-63 (92)
28 1uaw_A Mouse-musashi-1; RNP-ty 52.5 16 0.00055 21.8 3.5 46 34-85 10-56 (77)
29 2fy1_A RNA-binding motif prote 52.5 31 0.001 22.9 5.2 46 34-86 17-63 (116)
30 1fj7_A Nucleolin RBD1, protein 52.0 6.4 0.00022 25.2 1.6 53 26-86 20-73 (101)
31 4fxv_A ELAV-like protein 1; RN 51.5 46 0.0016 21.5 8.4 66 12-86 10-76 (99)
32 2pe8_A Splicing factor 45; RRM 51.1 38 0.0013 22.5 5.5 44 37-85 26-70 (105)
33 2mss_A Protein (musashi1); RNA 50.9 25 0.00087 20.9 4.3 48 34-87 9-57 (75)
34 2cqp_A RNA-binding protein 12; 50.9 43 0.0015 20.9 7.1 54 26-86 18-72 (98)
35 1x5s_A Cold-inducible RNA-bind 50.9 28 0.00097 22.0 4.7 47 34-86 22-69 (102)
36 1wez_A HnRNP H', FTP-3, hetero 50.1 26 0.00089 22.9 4.5 51 26-85 18-69 (102)
37 1jmt_A Splicing factor U2AF 35 49.5 17 0.00059 24.1 3.5 34 47-86 49-83 (104)
38 1oo0_B CG8781-PA, drosophila Y 49.3 49 0.0017 21.2 6.3 54 26-86 29-83 (110)
39 2hvz_A Splicing factor, argini 49.2 45 0.0015 21.0 5.5 42 34-86 10-52 (101)
40 1s79_A Lupus LA protein; RRM, 49.0 32 0.0011 22.6 4.9 46 34-86 21-67 (103)
41 2x1f_A MRNA 3'-END-processing 48.1 48 0.0016 20.7 6.1 47 34-86 12-59 (96)
42 1u6f_A Tcubp1, RNA-binding pro 48.0 59 0.002 21.7 8.8 47 34-86 52-99 (139)
43 1wel_A RNA-binding protein 12; 47.9 36 0.0012 22.6 5.1 57 25-88 27-85 (124)
44 2cqd_A RNA-binding region cont 47.6 18 0.00062 23.7 3.4 47 34-86 27-74 (116)
45 2fc8_A NCL protein; structure 47.5 35 0.0012 21.5 4.8 44 34-86 25-69 (102)
46 2ek1_A RNA-binding protein 12; 46.2 50 0.0017 20.4 6.9 47 34-86 25-72 (95)
47 2cqh_A IGF-II mRNA-binding pro 45.7 52 0.0018 20.4 5.6 41 34-86 18-59 (93)
48 2cph_A RNA binding motif prote 45.5 54 0.0019 20.7 5.5 47 34-86 25-73 (107)
49 2dgp_A Bruno-like 4, RNA bindi 45.5 32 0.0011 21.9 4.3 52 27-85 17-69 (106)
50 2cqg_A TDP-43, TAR DNA-binding 45.2 56 0.0019 20.6 8.3 47 34-86 25-72 (103)
51 3pgw_A U1-A; protein-RNA compl 44.9 78 0.0027 23.5 7.0 48 34-86 19-67 (282)
52 1x4b_A Heterogeneous nuclear r 44.6 25 0.00084 23.0 3.7 47 34-86 37-84 (116)
53 1x4e_A RNA binding motif, sing 44.5 40 0.0014 20.5 4.5 48 34-87 15-63 (85)
54 3s8s_A Histone-lysine N-methyl 44.4 66 0.0023 21.2 8.3 47 34-86 16-63 (110)
55 1nu4_A U1A RNA binding domain; 44.0 17 0.00057 22.9 2.7 48 34-86 18-66 (97)
56 2kt5_A RNA and export factor-b 43.9 52 0.0018 21.7 5.3 53 26-86 38-91 (124)
57 2pq0_A Hypothetical conserved 43.6 29 0.00099 25.4 4.3 33 25-61 174-206 (258)
58 2cq0_A Eukaryotic translation 43.3 60 0.0021 20.5 6.5 47 34-86 25-72 (103)
59 2ki2_A SS-DNA binding protein 43.1 13 0.00044 23.1 2.0 49 34-88 11-60 (90)
60 2la6_A RNA-binding protein FUS 43.0 60 0.0021 20.4 6.1 47 34-86 23-78 (99)
61 1wxv_A BAG-family molecular ch 42.4 56 0.0019 20.8 5.1 25 35-59 31-55 (92)
62 2dis_A Unnamed protein product 42.3 64 0.0022 20.5 5.8 48 34-86 18-67 (109)
63 2db1_A Heterogeneous nuclear r 42.0 54 0.0018 21.7 5.2 55 25-86 19-76 (118)
64 2cqi_A Nucleolysin TIAR; RNA r 41.5 60 0.002 20.5 5.2 45 34-86 25-70 (103)
65 1iqt_A AUF1, heterogeneous nuc 41.4 9.5 0.00032 22.8 1.1 47 34-86 9-56 (75)
66 1x5u_A Splicing factor 3B subu 41.3 65 0.0022 20.3 5.4 47 34-86 25-72 (105)
67 3fzq_A Putative hydrolase; YP_ 41.2 41 0.0014 24.4 4.8 26 35-61 198-223 (274)
68 2a3j_A U1 small nuclear ribonu 40.8 28 0.00095 24.1 3.6 44 34-85 39-86 (127)
69 2zws_A Neutral ceramidase; pri 40.7 17 0.00058 32.4 3.0 41 28-69 61-103 (646)
70 2kxn_B Transformer-2 protein h 40.6 55 0.0019 22.2 5.1 47 34-86 56-103 (129)
71 1l3k_A Heterogeneous nuclear r 40.5 87 0.003 21.5 8.3 47 34-86 114-161 (196)
72 2dgs_A DAZ-associated protein 40.4 66 0.0023 20.1 5.6 47 34-86 20-67 (99)
73 2dnz_A Probable RNA-binding pr 40.0 65 0.0022 19.8 6.4 47 34-86 15-62 (95)
74 2cqc_A Arginine/serine-rich sp 39.9 64 0.0022 19.8 8.1 47 34-86 25-72 (95)
75 2rs2_A Musashi-1, RNA-binding 39.9 51 0.0017 21.5 4.7 47 34-86 35-82 (109)
76 4f25_A Polyadenylate-binding p 39.8 77 0.0026 20.7 7.5 45 34-86 15-60 (115)
77 2d9o_A DNAJ (HSP40) homolog, s 39.7 21 0.00073 23.8 2.8 41 34-85 27-68 (100)
78 2hgl_A HNRPF protein, heteroge 39.7 91 0.0031 21.7 6.3 54 26-86 47-103 (136)
79 1t0y_A Tubulin folding cofacto 39.6 60 0.002 22.2 5.2 45 1-56 3-47 (122)
80 2cqb_A Peptidyl-prolyl CIS-tra 39.6 32 0.0011 21.8 3.5 47 34-86 22-69 (102)
81 3ex7_B RNA-binding protein 8A; 39.4 71 0.0024 20.9 5.5 47 34-86 32-79 (126)
82 3n9u_C Cleavage and polyadenyl 39.4 98 0.0034 21.8 8.9 49 34-86 65-114 (156)
83 2cq3_A RNA-binding protein 9; 39.3 71 0.0024 20.1 5.7 45 34-86 25-70 (103)
84 2do0_A HnRNP M, heterogeneous 38.6 67 0.0023 20.6 5.1 46 34-86 25-71 (114)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 38.5 83 0.0029 20.7 6.3 47 34-86 73-120 (140)
86 2div_A TRNA selenocysteine ass 38.5 71 0.0024 19.9 6.8 47 34-86 19-67 (99)
87 3bs9_A Nucleolysin TIA-1 isofo 38.4 65 0.0022 19.4 8.7 47 34-86 16-63 (87)
88 3sde_A Paraspeckle component 1 38.4 74 0.0025 23.8 6.0 46 34-86 106-152 (261)
89 1wg1_A KIAA1579 protein, homol 38.0 24 0.00083 21.9 2.7 40 34-86 15-55 (88)
90 2xs2_A Deleted in azoospermia- 37.9 74 0.0025 20.0 6.8 45 34-85 19-64 (102)
91 1whw_A Hypothetical protein ri 37.8 73 0.0025 19.8 6.0 47 34-86 18-65 (99)
92 3md3_A Nuclear and cytoplasmic 37.5 87 0.003 20.7 8.3 47 34-86 97-144 (166)
93 1x5o_A RNA binding motif, sing 37.5 80 0.0027 20.2 5.7 46 34-86 35-81 (114)
94 2do4_A Squamous cell carcinoma 37.4 75 0.0026 19.9 8.0 46 34-86 27-73 (100)
95 1v6e_A Cytoskeleton-associated 37.2 63 0.0021 20.9 4.8 22 34-56 27-48 (95)
96 2dnn_A RNA-binding protein 12; 36.9 44 0.0015 22.4 4.1 54 24-86 17-71 (109)
97 1h2v_Z 20 kDa nuclear CAP bind 36.9 99 0.0034 21.1 8.7 47 34-86 49-96 (156)
98 2dnl_A Cytoplasmic polyadenyla 36.8 11 0.00039 24.9 1.0 49 34-86 18-67 (114)
99 2cpe_A RNA-binding protein EWS 36.7 31 0.0011 22.3 3.2 48 34-86 25-80 (113)
100 3tve_T 50S ribosomal protein L 36.6 68 0.0023 21.7 5.0 44 13-63 13-56 (92)
101 1fjc_A Nucleolin RBD2, protein 36.0 36 0.0012 21.2 3.4 42 34-86 26-68 (96)
102 3d2w_A TAR DNA-binding protein 35.9 38 0.0013 21.4 3.5 50 25-86 13-63 (89)
103 1x5t_A Splicing factor 3B subu 35.8 52 0.0018 20.3 4.1 47 34-86 15-63 (96)
104 1rk8_A CG8781-PA, CG8781-PA pr 35.7 1.1E+02 0.0037 21.2 8.6 47 34-86 82-129 (165)
105 2e5j_A Methenyltetrahydrofolat 35.4 73 0.0025 19.9 4.8 42 34-86 29-71 (97)
106 1x4c_A Splicing factor, argini 35.2 57 0.002 21.0 4.4 49 23-85 15-64 (108)
107 3dnp_A Stress response protein 35.0 48 0.0016 24.5 4.4 31 27-61 195-225 (290)
108 3r4c_A Hydrolase, haloacid deh 34.9 49 0.0017 24.1 4.4 32 26-61 186-217 (268)
109 2qlc_A DNA repair protein RADC 34.8 33 0.0011 24.3 3.2 36 24-59 71-112 (126)
110 2dgo_A Cytotoxic granule-assoc 34.5 91 0.0031 20.0 8.7 47 34-86 25-72 (115)
111 2kn4_A Immunoglobulin G-bindin 34.2 99 0.0034 21.0 5.7 54 26-86 73-127 (158)
112 2cq4_A RNA binding motif prote 34.1 78 0.0027 20.3 4.9 47 34-86 35-82 (114)
113 4a17_R RPL23A, 60S ribosomal p 34.0 1.4E+02 0.0049 22.1 7.1 56 22-86 88-146 (150)
114 2dnm_A SRP46 splicing factor; 33.9 58 0.002 20.5 4.1 46 34-85 23-69 (103)
115 2cpy_A RNA-binding protein 12; 33.9 34 0.0012 22.4 3.1 55 26-87 18-73 (114)
116 3s7r_A Heterogeneous nuclear r 33.9 80 0.0027 19.1 7.8 47 34-86 21-68 (87)
117 2f3j_A RNA and export factor b 33.6 60 0.0021 23.4 4.6 54 25-86 90-144 (177)
118 4a8x_A RNA-binding protein wit 33.3 45 0.0015 20.2 3.4 48 34-86 14-62 (88)
119 2khc_A Testis-specific RNP-typ 33.2 57 0.0019 21.1 4.1 53 26-85 43-96 (118)
120 1nrw_A Hypothetical protein, h 33.1 52 0.0018 24.7 4.3 33 25-61 207-239 (288)
121 2hj8_A Interferon-induced 17 k 32.6 94 0.0032 19.6 7.2 35 22-60 15-49 (88)
122 1nf2_A Phosphatase; structural 32.6 54 0.0018 24.4 4.3 32 26-61 182-213 (268)
123 2e5h_A Zinc finger CCHC-type a 32.5 69 0.0024 19.7 4.3 47 34-86 26-73 (94)
124 3iz5_X 60S ribosomal protein L 32.2 1.5E+02 0.0053 21.9 6.7 60 18-86 85-148 (152)
125 1x1m_A Ubiquitin-like protein 32.1 89 0.003 20.6 5.0 20 36-56 45-66 (107)
126 2krb_A Eukaryotic translation 31.9 22 0.00074 21.8 1.7 42 37-86 20-62 (81)
127 3u5e_X 60S ribosomal protein L 31.7 1.5E+02 0.0052 21.7 7.1 60 18-86 75-138 (142)
128 2okr_C MAP kinase-activated pr 31.6 2.2 7.4E-05 23.3 -2.7 15 8-22 3-17 (26)
129 2la4_A Nuclear and cytoplasmic 31.4 73 0.0025 20.0 4.3 40 34-85 37-77 (101)
130 3mpo_A Predicted hydrolase of 31.2 58 0.002 23.9 4.2 25 36-61 196-220 (279)
131 2err_A Ataxin-2-binding protei 31.2 63 0.0021 21.0 4.0 45 34-86 39-84 (109)
132 1x4h_A RNA-binding protein 28; 31.0 1E+02 0.0035 19.5 5.9 47 34-86 25-72 (111)
133 4dw8_A Haloacid dehalogenase-l 30.8 61 0.0021 23.7 4.3 25 36-61 196-220 (279)
134 3ftb_A Histidinol-phosphate am 30.7 41 0.0014 25.4 3.4 26 34-60 59-84 (361)
135 3fkd_A L-threonine-O-3-phospha 30.4 32 0.0011 26.1 2.7 25 36-61 50-74 (350)
136 3p1t_A Putative histidinol-pho 30.4 28 0.00097 26.0 2.4 26 34-60 49-74 (337)
137 1wf1_A RNA-binding protein RAL 29.6 1.1E+02 0.0037 19.5 5.0 36 36-85 40-76 (110)
138 3pgv_A Haloacid dehalogenase-l 29.6 65 0.0022 24.0 4.3 32 26-61 201-232 (285)
139 2ywk_A Putative RNA-binding pr 29.5 1E+02 0.0034 18.9 8.1 46 34-86 26-72 (95)
140 3dao_A Putative phosphatse; st 29.4 66 0.0023 24.0 4.4 25 36-61 210-234 (283)
141 1rlm_A Phosphatase; HAD family 29.4 64 0.0022 23.9 4.3 25 36-61 190-214 (271)
142 3q2s_C Cleavage and polyadenyl 29.4 1.8E+02 0.006 21.7 7.8 57 26-88 71-130 (229)
143 3ucg_A Polyadenylate-binding p 29.3 97 0.0033 18.7 7.2 47 34-86 16-63 (89)
144 1wf0_A TDP-43, TAR DNA-binding 28.9 40 0.0014 20.7 2.6 43 34-87 15-58 (88)
145 1wg5_A Heterogeneous nuclear r 28.7 21 0.0007 23.2 1.2 53 26-86 18-72 (104)
146 2jrs_A RNA-binding protein 39; 28.4 1.2E+02 0.0042 19.6 8.7 47 34-86 36-83 (108)
147 1x5p_A Negative elongation fac 27.9 28 0.00095 22.0 1.7 40 35-86 24-64 (97)
148 2bz2_A Negative elongation fac 27.5 44 0.0015 22.5 2.8 40 35-86 48-88 (121)
149 3abf_A 4-oxalocrotonate tautom 27.2 54 0.0018 19.1 2.9 33 26-59 4-41 (64)
150 1s2o_A SPP, sucrose-phosphatas 27.1 77 0.0026 23.3 4.3 33 25-61 153-185 (244)
151 2ytc_A PRE-mRNA-splicing facto 27.0 79 0.0027 19.0 3.7 41 34-86 22-63 (85)
152 3lqv_A PRE-mRNA branch site pr 27.0 54 0.0018 21.1 3.1 43 34-85 18-61 (115)
153 3hdo_A Histidinol-phosphate am 26.9 38 0.0013 25.8 2.6 26 34-60 63-88 (360)
154 3m1y_A Phosphoserine phosphata 26.6 40 0.0014 23.3 2.5 65 36-101 141-205 (217)
155 1fg7_A Histidinol phosphate am 26.5 38 0.0013 26.1 2.6 25 35-60 57-81 (356)
156 1iv3_A 2-C-methyl-D-erythritol 26.4 48 0.0016 24.7 3.0 32 28-61 100-131 (152)
157 2kjr_A CG11242; UBL, ubiquitin 26.4 1.4E+02 0.0048 19.6 7.8 49 4-60 14-62 (95)
158 3r8s_T 50S ribosomal protein L 26.4 1.1E+02 0.0038 20.6 4.7 40 12-56 17-57 (93)
159 1x4g_A Nucleolysin TIAR; struc 26.4 1.1E+02 0.0038 19.4 4.6 41 34-86 35-76 (109)
160 2rbk_A Putative uncharacterize 26.4 57 0.0019 23.9 3.4 31 27-61 180-210 (261)
161 3bs3_A Putative DNA-binding pr 26.0 26 0.0009 20.7 1.3 25 32-58 46-70 (76)
162 1t0a_A 2C-methyl-D-erythritol 26.0 51 0.0018 24.7 3.1 34 28-63 102-135 (159)
163 1gx1_A 2-C-methyl-D-erythritol 25.8 52 0.0018 24.7 3.1 34 28-63 101-134 (160)
164 2raq_A Conserved protein MTH88 25.7 1.2E+02 0.0042 21.0 4.8 40 22-64 7-46 (97)
165 2cjk_A Nuclear polyadenylated 25.5 46 0.0016 22.4 2.6 47 34-86 97-144 (167)
166 3ns6_A Eukaryotic translation 25.5 1.3E+02 0.0044 19.0 4.7 20 67-86 49-69 (100)
167 1rkq_A Hypothetical protein YI 25.4 81 0.0028 23.6 4.2 32 26-61 190-221 (282)
168 2nlw_A Eukaryotic translation 25.3 1.1E+02 0.0039 19.5 4.5 41 37-85 34-75 (105)
169 1l6r_A Hypothetical protein TA 25.3 91 0.0031 22.8 4.4 33 25-61 144-176 (227)
170 2qfj_A FBP-interacting repress 25.2 1.7E+02 0.0059 20.3 8.3 47 34-86 135-182 (216)
171 3md1_A Nuclear and cytoplasmic 25.1 1.1E+02 0.0039 18.1 8.6 47 34-86 11-58 (83)
172 3beg_B Splicing factor, argini 25.0 53 0.0018 21.6 2.8 47 25-85 18-65 (115)
173 2pmp_A 2-C-methyl-D-erythritol 24.6 54 0.0019 24.6 3.0 32 28-61 103-134 (160)
174 1y7y_A C.AHDI; helix-turn-heli 24.4 27 0.00092 20.5 1.1 24 32-57 49-72 (74)
175 2g4b_A Splicing factor U2AF 65 24.1 1.6E+02 0.0056 19.6 7.2 46 34-85 104-150 (172)
176 2daf_A FLJ35834 protein; hypot 24.1 1.4E+02 0.0047 21.2 4.9 26 34-60 35-61 (118)
177 3re3_A 2-C-methyl-D-erythritol 23.9 56 0.0019 24.6 2.9 34 28-63 106-139 (162)
178 1wi8_A EIF-4B, eukaryotic tran 23.9 1.4E+02 0.0048 18.7 4.7 55 25-87 17-73 (104)
179 3l7y_A Putative uncharacterize 23.7 94 0.0032 23.4 4.3 25 36-61 227-251 (304)
180 3mlf_A Transcriptional regulat 23.7 59 0.002 21.5 2.9 26 32-59 59-84 (111)
181 1why_A Hypothetical protein ri 23.5 90 0.0031 19.4 3.6 17 34-51 27-43 (97)
182 3mdf_A Peptidyl-prolyl CIS-tra 23.5 1.2E+02 0.0043 18.0 7.2 47 34-86 17-64 (85)
183 2jwn_A Embryonic polyadenylate 23.2 1.6E+02 0.0054 19.0 7.3 48 34-87 46-94 (124)
184 2x4k_A 4-oxalocrotonate tautom 23.1 52 0.0018 18.7 2.2 33 26-59 6-43 (63)
185 1fxl_A Paraneoplastic encephal 22.9 1.7E+02 0.0057 19.2 8.4 47 34-86 12-59 (167)
186 1b7f_A Protein (SXL-lethal pro 22.9 1.7E+02 0.0058 19.3 8.1 47 34-86 99-146 (168)
187 2lea_A Serine/arginine-rich sp 22.8 35 0.0012 23.4 1.6 47 34-86 57-104 (135)
188 2dnq_A RNA-binding protein 4B; 22.7 1.3E+02 0.0044 18.3 4.2 39 34-86 18-57 (90)
189 2b30_A Pvivax hypothetical pro 22.4 94 0.0032 23.8 4.1 32 26-61 216-247 (301)
190 2jvo_A Nucleolar protein 3; nu 22.4 78 0.0027 20.6 3.2 39 34-86 41-80 (108)
191 2voo_A Lupus LA protein; RNA-b 22.4 1.1E+02 0.0038 22.2 4.3 47 34-87 119-166 (193)
192 2ewt_A BLDD, putative DNA-bind 22.2 34 0.0012 20.0 1.2 24 32-57 46-69 (71)
193 3get_A Histidinol-phosphate am 22.0 54 0.0019 24.9 2.6 23 38-61 67-89 (365)
194 2yh0_A Splicing factor U2AF 65 21.6 2E+02 0.0068 19.6 7.2 46 34-85 124-170 (198)
195 2zjr_Q 50S ribosomal protein L 21.6 71 0.0024 21.7 2.9 40 13-57 14-53 (95)
196 4hcn_B Polyubiquitin, ubiquiti 21.5 1.2E+02 0.0042 19.4 4.0 22 34-56 41-62 (98)
197 2ad9_A Polypyrimidine tract-bi 21.5 2E+02 0.0068 19.6 5.4 47 26-85 34-81 (119)
198 3f0d_A 2-C-methyl-D-erythritol 21.3 68 0.0023 24.6 3.0 31 33-64 127-157 (183)
199 1zod_A DGD, 2,2-dialkylglycine 21.2 70 0.0024 25.1 3.2 30 31-61 80-109 (433)
200 2ghp_A U4/U6 snRNA-associated 21.1 2.5E+02 0.0085 20.8 6.2 47 34-86 127-174 (292)
201 1uh6_A Ubiquitin-like 5; beta- 21.1 1.8E+02 0.006 19.7 4.9 32 23-59 40-71 (100)
202 3egn_A RNA-binding protein 40; 21.0 1.9E+02 0.0066 19.2 5.8 49 34-85 55-106 (143)
203 3mtn_B UBA80, ubcep1, ubiquiti 20.9 1.5E+02 0.005 17.9 4.1 31 22-57 14-44 (85)
204 3b64_A Macrophage migration in 20.8 1.8E+02 0.0062 18.9 4.9 35 24-59 58-97 (112)
205 4h3d_A 3-dehydroquinate dehydr 20.8 84 0.0029 24.4 3.5 29 28-57 145-173 (258)
206 2lcw_A RNA-binding protein FUS 26.0 21 0.00072 23.4 0.0 47 34-86 17-72 (116)
207 3phx_B Ubiquitin-like protein 20.5 1.5E+02 0.0051 17.8 5.8 31 22-57 15-45 (79)
208 3ffh_A Histidinol-phosphate am 20.5 50 0.0017 25.1 2.1 26 35-61 66-91 (363)
209 2i2y_A Fusion protein consists 20.2 1.1E+02 0.0037 20.7 3.7 42 34-86 83-125 (150)
210 3djh_A Macrophage migration in 20.2 1.1E+02 0.0037 20.4 3.6 38 24-62 57-99 (114)
No 1
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=100.00 E-value=1.5e-59 Score=352.89 Aligned_cols=131 Identities=64% Similarity=0.989 Sum_probs=125.9
Q ss_pred CCCcceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCC
Q 032760 1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDS 80 (134)
Q Consensus 1 m~~~~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds 80 (134)
|+| +|||+|++|++||||+|+||+|+|+|||.||||++||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||
T Consensus 1 m~~-~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT~fG~gkstGfa~IYds 78 (135)
T 3u5c_Y 1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNS 78 (135)
T ss_dssp -CC-CCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEECTTSSEEEEEEEEESS
T ss_pred CCC-cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEeccCCceEEEEEEEeCC
Confidence 888 89999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhcCCchhhhhcCCcccccc-chhhHHHHhhhccccccccccccchhhhc
Q 032760 81 VDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRGVKKTKASDAAKK 133 (134)
Q Consensus 81 ~e~~kk~Epk~~l~Rn~~~e~~k~-~rk~~ke~kn~~kk~~Gt~k~~~~~~~k~ 133 (134)
+|+|++|||+|+|+|||+.|+.++ ||+|+||.+|++||+|||+|++++++.++
T Consensus 79 ~d~akk~EPkyrL~R~gl~ek~~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~ 132 (135)
T 3u5c_Y 79 VAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132 (135)
T ss_dssp HHHHHHHSCHHHHHHHTSSCCCCCSCHHHHHHHHHHHHTCCSCSHHHHHHHHHH
T ss_pred HHHHHhcCchheEeeccccccccCccHHHHHHHHhcchhhcchhhhhccccccc
Confidence 999999999999999999998885 99999999999999999999999877553
No 2
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=100.00 E-value=1.3e-57 Score=346.81 Aligned_cols=129 Identities=40% Similarity=0.673 Sum_probs=125.6
Q ss_pred ceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHH
Q 032760 5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSA 84 (134)
Q Consensus 5 ~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~ 84 (134)
+|||+|++|++||||+|+||+|+|+|||.||||+.||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+|+|
T Consensus 2 ~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~-~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a 80 (149)
T 2xzm_P 2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFSTQYGGGKSTGFALVYDNQQYL 80 (149)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTC-CGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred cEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence 79999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhcCCchhhhhcCCccccccchhhHHHHhhhccccccccccccchhhhcC
Q 032760 85 KKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKKK 134 (134)
Q Consensus 85 kk~Epk~~l~Rn~~~e~~k~~rk~~ke~kn~~kk~~Gt~k~~~~~~~k~~ 134 (134)
++|||+|+|+|||+.++.++||+|+||.+||+||+|||+|++++.+++++
T Consensus 81 Kk~EPkyrL~Rngl~ek~~~sRkqrKe~knr~kkvrGt~k~~~~~~~k~~ 130 (149)
T 2xzm_P 81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGD 130 (149)
T ss_dssp HHHSCHHHHHHTTSSCCCCCHHHHHHHHHHHHTTSCHHHHHHHHTTSCSC
T ss_pred HhhCchheeeeccccccccCcHHHHHHHHhhhhhhcchhhhhcccccccc
Confidence 99999999999999998888999999999999999999999998877753
No 3
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1e-59 Score=354.95 Aligned_cols=130 Identities=88% Similarity=1.285 Sum_probs=93.4
Q ss_pred ceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHH
Q 032760 5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSA 84 (134)
Q Consensus 5 ~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~ 84 (134)
+|||+|++|++||||+|+||+|+|+|||.||||++||+++||+||+++|+|+||||+|+|+||+|+|+|||+||||+|+|
T Consensus 9 ~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~d~a 88 (138)
T 3iz6_U 9 AVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDAA 88 (138)
T ss_dssp SCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCHHHH
T ss_pred cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence 89999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HhcCCchhhhhcCCccccccchhhHHHHhhhccccccccccccchhhhcC
Q 032760 85 KKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKKK 134 (134)
Q Consensus 85 kk~Epk~~l~Rn~~~e~~k~~rk~~ke~kn~~kk~~Gt~k~~~~~~~k~~ 134 (134)
++|||+|+|+|||+.|+.++||+|+||.+|++||+|||+|++++.+++++
T Consensus 89 Kk~EPkyrL~R~gl~ek~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~~ 138 (138)
T 3iz6_U 89 KKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138 (138)
T ss_dssp HSSCCCBTTTTTCC------------------------------------
T ss_pred HhcCchheEeeccccccccccHHHHHHHHhcchhhcchheeeccccccCC
Confidence 99999999999999998888999999999999999999999999988764
No 4
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=100.00 E-value=2.8e-45 Score=266.20 Aligned_cols=97 Identities=32% Similarity=0.584 Sum_probs=91.6
Q ss_pred ceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHH
Q 032760 5 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSA 84 (134)
Q Consensus 5 ~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~ 84 (134)
...|+|+++++||||+|+||+|+|+|||+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus 8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a 86 (107)
T 2v94_A 8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM 86 (107)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence 37899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhcCCchhhhhcCCcccc
Q 032760 85 KKFEPKYRLIRNGLDTKV 102 (134)
Q Consensus 85 kk~Epk~~l~Rn~~~e~~ 102 (134)
++|||+|+|+|||+.+++
T Consensus 87 kk~Epky~L~R~g~~e~~ 104 (107)
T 2v94_A 87 LYIEPEYILIRDGIIEKK 104 (107)
T ss_dssp HHHSCHHHHHHTTC----
T ss_pred HhhCchheeeecCccccc
Confidence 999999999999998764
No 5
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=100.00 E-value=5.3e-45 Score=261.17 Aligned_cols=95 Identities=29% Similarity=0.398 Sum_probs=92.5
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760 7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK 86 (134)
Q Consensus 7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk 86 (134)
.|+|.++++||||+|+||+|+|+|||+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~-~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk 80 (98)
T 2g1d_A 2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML 80 (98)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence 489999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchhhhhcCCcccc
Q 032760 87 FEPKYRLIRNGLDTKV 102 (134)
Q Consensus 87 ~Epk~~l~Rn~~~e~~ 102 (134)
|||+|+|+||++.+++
T Consensus 81 ~Epky~l~R~~~~~~~ 96 (98)
T 2g1d_A 81 YEPDYELIRNGLKQKE 96 (98)
T ss_dssp HCTTSCSCSSCCCSSC
T ss_pred hCcceeeeecCccccc
Confidence 9999999999998763
No 6
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=100.00 E-value=8.3e-44 Score=256.17 Aligned_cols=93 Identities=26% Similarity=0.420 Sum_probs=90.9
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760 7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK 86 (134)
Q Consensus 7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk 86 (134)
.|+|.++++||||+|+||+|+|+| |+|||||.||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~akk 79 (101)
T 1xn9_A 2 DIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ 79 (101)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence 489999999999999999999999 89999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchhhhhcCCccc
Q 032760 87 FEPKYRLIRNGLDTK 101 (134)
Q Consensus 87 ~Epk~~l~Rn~~~e~ 101 (134)
|||+|+|+||++.++
T Consensus 80 ~Epky~L~R~g~~e~ 94 (101)
T 1xn9_A 80 VEQEYVLKRNAVPGS 94 (101)
T ss_dssp HHTGGGCCCCSCCCC
T ss_pred hCchheeeecCcccc
Confidence 999999999999875
No 7
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=100.00 E-value=2.1e-43 Score=254.57 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=90.4
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHh
Q 032760 7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKK 86 (134)
Q Consensus 7 ~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk 86 (134)
.|.|.++++||||+|+||+|+|+| |+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~akk 79 (102)
T 1ywx_A 2 DISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT 79 (102)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEccEecCCCceEEEEEEEECCHHHHHh
Confidence 478999999999999999999999 78999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchhhhhcCCccc
Q 032760 87 FEPKYRLIRNGLDTK 101 (134)
Q Consensus 87 ~Epk~~l~Rn~~~e~ 101 (134)
|||+|+|+|||+.++
T Consensus 80 ~Epky~L~R~gl~e~ 94 (102)
T 1ywx_A 80 IETKSVLEKNKIEEE 94 (102)
T ss_dssp SSCHHHHHHSCSCCC
T ss_pred hCchhheeecCccch
Confidence 999999999999875
No 8
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.32 E-value=8.5 Score=24.12 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+..||++.++.. ++ .++-++.+ ..|.+.|||.| |++.+.+.+
T Consensus 20 ~~~t~~~l~~~F~~~-~i--~~v~i~~~-----~~g~~~g~afV~f~~~~~a~~ 65 (91)
T 2dgw_A 20 FNVTEKNVMEFLAPL-KP--VAIRIVRN-----AHGNKTGYIFVDFSNEEEVKQ 65 (91)
T ss_dssp SSCCHHHHHHHHTTS-CC--SEEEEEEC-----TTSCEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Cc--eEEEEEEC-----CCCCCceEEEEEECCHHHHHH
Confidence 567889999999766 66 34444443 35778899988 677766654
No 9
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.14 E-value=18 Score=22.83 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++. -...-|.+.+.|||.| |+|.+.+.+
T Consensus 15 ~~~t~~~l~~~F~-~~G~-i~~v~i~~-~~~~~gt~~~~g~afV~f~~~~~a~~ 65 (98)
T 2cpf_A 15 FSTTEETLKGVFS-KVGA-IKSCTISK-KKNKAGVLLSMGFGFVEYKKPEQAQK 65 (98)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEEE-EECTTCCEEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEe-cCCCCCCcCcccEEEEEECCHHHHHH
Confidence 4578899998885 4553 12222222 1222256799999988 788777654
No 10
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=69.78 E-value=11 Score=23.66 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHhHcCCC-CCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVK-DPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~-~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++ .||.. =.++.++.+ -..|.+.|||.| |.|.+.+.+
T Consensus 11 ~~~t~~~l~~~F~-~~G~~~v~~v~i~~~----~~~g~~kG~afV~f~~~~~a~~ 60 (90)
T 3p5t_L 11 WWTTDEDLTEAVH-SLGVNDILEIKFFEN----RANGQSKGFALVGVGSEASSKK 60 (90)
T ss_dssp TTCCHHHHHHHHH-TTTCCCCCCEEEEEC----TTTCCEEEEEEECC-CHHHHHH
T ss_pred CCCCHHHHHHHHH-HhCCCceEEEEEEec----CCCCccCcEEEEEECCHHHHHH
Confidence 4568889998884 55610 234444432 235788999988 777776653
No 11
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.50 E-value=11 Score=24.23 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=33.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhc
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKF 87 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~ 87 (134)
+-|-.. ....+.++|++.++.. ++ .++.++ ..-..+.+.|||.| |.+.+.+...
T Consensus 18 l~V~nL-p~~~t~~~l~~~F~~~-gi--~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 18 AYVGNL-PFNTVQGDIDAIFKDL-SI--RSVRLV----RDKDTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp EEEESC-CTTCCHHHHHHHTTTS-CE--EEEEEE----ECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHhC-Cc--eEEEEe----ecCCCCccceEEEEEECCHHHHHHH
Confidence 334443 3567888988887554 55 233333 23344678888877 7787777654
No 12
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=64.91 E-value=19 Score=23.00 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++.+ . .+.+.|||.| |.|.+.+.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~---~--~g~~~g~afV~f~~~~~A~~ 71 (105)
T 2dnh_A 25 KQQSEEDVLRLFQ-PFGV-IDECTVLRG---P--DGSSKGCAFVKFSSHTEAQA 71 (105)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEEEC---S--SSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEEC---C--CCCcCcEEEEEeCCHHHHHH
Confidence 5678889988885 4553 123333332 1 3678888877 777776654
No 13
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.19 E-value=12 Score=23.92 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++.+ .+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~------~g~~~g~afV~f~~~~~A~~ 70 (103)
T 2d9p_A 25 DGIDDERLRKAFS-PFGT-ITSAKVMME------GGRSKGFGFVCFSSPEEATK 70 (103)
T ss_dssp TTCCHHHHHHTTT-TTSC-EEEEEEEEC------SSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEEcC------CCCcCEEEEEEECCHHHHHH
Confidence 4577888887775 4553 123333332 6778888877 777776653
No 14
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=64.17 E-value=24 Score=22.99 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++.+- -.+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~~----~~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpz_A 35 QEFGDQDLLQMFM-PFGN-VVSAKVFIDK----QTNLSKCFGFVSYDNPVSAQA 82 (115)
T ss_dssp SSCCHHHHHHHHG-GGSC-CSEEEEEECS----SSCSEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEECC----CCCCcCccEEEEECCHHHHHH
Confidence 4577899998885 5554 2344444332 34678888887 778776654
No 15
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.61 E-value=26 Score=22.29 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++..|+. =.++.++.+ . .+.+.|||.| |+|.+.|.+
T Consensus 19 ~~~t~~~l~~~F~~~~G~-v~~v~i~~~----~-~g~~~g~afV~f~~~~~a~~ 66 (104)
T 2dhg_A 19 PDVDDGMLYEFFVKVYPS-CRGGKVVLD----Q-TGVSKGYGFVKFTDELEQKR 66 (104)
T ss_dssp TTCCHHHHHHHHHHHCTT-EEEEEEEEC----T-TCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-eEEEEEEEC----C-CCCccceEEEEECCHHHHHH
Confidence 467889999999776775 233333322 2 5668888877 777776544
No 16
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=62.84 E-value=12 Score=25.73 Aligned_cols=46 Identities=7% Similarity=0.038 Sum_probs=28.9
Q ss_pred HHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 38 KAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 38 r~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
.+||++..+ .||. =.++.|+..-.+.-+.+.+.|||.| |.+.+.|.
T Consensus 39 eedl~eef~-k~G~-V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 39 EGEVTEECG-KFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp HHHHHHHHT-TTSC-EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHH
T ss_pred HHHHHHHHh-ccCC-EeEEEEeecCCCcccCCcceEEEEEEECCHHHHH
Confidence 456777664 5665 3445555444443356788899887 77777664
No 17
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.74 E-value=9.9 Score=24.82 Aligned_cols=47 Identities=19% Similarity=0.341 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++..=.+ .++++...+. .+.+.|||.| |+|.+.+..
T Consensus 35 ~~~t~~~l~~~f~~~G~v--~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 35 PRVTERDLVSLFARFQEK--KGPPIQFRMM----TGRMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp TTCCHHHHHHHTHHHHHS--SSSCCEEEEE----CSSSCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCc--cceEEEEEcC----CCccceEEEEEECCHHHHHH
Confidence 567889999888665444 3433333333 4566677766 777766643
No 18
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=60.89 E-value=30 Score=23.37 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.+.. ||. =.++.++.+-.| |.+.+.|||.| |.+.+.+..
T Consensus 13 ~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~--~~~~~~g~afV~f~~~~~A~~ 62 (175)
T 3nmr_A 13 RTWSEKDLRELFEQ-YGA-VYEINVLRDRSQ--NPPQSKGCCFVTFYTRKAALE 62 (175)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEEEECSS--SSCEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC-EEEEEEEecCCC--CCCCcceEEEEEECCHHHHHH
Confidence 56788999988854 554 233333332222 23489999988 777776653
No 19
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.62 E-value=26 Score=24.13 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCC---CCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKD---PNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~---~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
.|-|..- ....+.+||++-++..-.+ . .++.++.+ . .|.++|||.| |++.+.+.
T Consensus 25 ~v~V~nL-p~~~te~dl~~~F~~~g~v-~g~v~~v~i~~d-~----~gr~~G~aFV~F~~~~~A~ 82 (123)
T 2dha_A 25 IVRMRGL-PFTATAEEVVAFFGQHCPI-TGGKEGILFVTY-P----DGRPTGDAFVLFACEEYAQ 82 (123)
T ss_dssp EEEECSC-CTTCCHHHHHHHHHTTSCC-TTGGGGEEEEEC-T----TSCEEEEEEECCSSHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHHhhCCc-cCCcceEEEEEC-C----CCCEeeEEEEEECCHHHHH
Confidence 4445443 3577889999999664333 2 35666654 2 3678899988 55655554
No 20
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.83 E-value=30 Score=21.87 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++ .....|.+.|||.| |.|.+.+.+
T Consensus 18 ~~~~~~~l~~~f~~-~G~-i~~~~i~----~~~~~g~~~g~afV~f~~~~~a~~ 65 (104)
T 1p1t_A 18 YEATEEQLKDIFSE-VGP-VVSFRLV----YDRETGKPKGYGFCEYQDQETALS 65 (104)
T ss_dssp TTSCHHHHHHHHHT-TSC-CSEEEEE----EETTTTEEEEEEEEECSCHHHHHH
T ss_pred CcCCHHHHHHHHHh-cCC-eeEEEEE----eCCCCCccceEEEEEECCHHHHHH
Confidence 45788899998865 554 2333333 22335788999987 777776653
No 21
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.90 E-value=32 Score=21.94 Aligned_cols=47 Identities=13% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++. |...-..+.+.|||.| |.|.+.+.+
T Consensus 26 ~~~t~~~l~~~F~~-~G~-v~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~ 73 (105)
T 2dh8_A 26 WSTTQETLRSYFSQ-YGE-VVDCV----IMKDKTTNQSRGFGFVKFKDPNCVGT 73 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEE----EEECSSSCCEEEEEEEEESSTTHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EeeCCCCCCcceEEEEEECCHHHHHH
Confidence 56788999988865 453 12322 2333345678888877 777766544
No 22
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=58.62 E-value=11 Score=27.62 Aligned_cols=30 Identities=3% Similarity=-0.069 Sum_probs=20.3
Q ss_pred eEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 56 SIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 56 ~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
+.|+....+.-..+.+.||+.| |.+.+.+.
T Consensus 159 ~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~ 189 (222)
T 3dxb_A 159 VIIYQEKQGEEEDAEIIVKIFVEFSIASETH 189 (222)
T ss_dssp EEEEEEECCSSTTCCEEEEEEEEESSHHHHH
T ss_pred EEEecCCCCcccCcCceeEEEEEECCHHHHH
Confidence 3444444454456688999999 88887765
No 23
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=56.87 E-value=35 Score=21.72 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+. .||. =.++.++. .- .|.+.|||.| |.+.+.|.+
T Consensus 39 ~~~t~~~l~~~F~-~~G~-i~~v~i~~----~~-~g~~~g~afV~f~~~~~a~~ 85 (107)
T 3ulh_A 39 FGVSDADIQELFA-EFGT-LKKAAVHY----DR-SGRSLGTADVHFERKADALK 85 (107)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEEE----CT-TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEE----CC-CCCcceEEEEEECCHHHHHH
Confidence 4577889988885 4554 12222222 22 6678888887 788777754
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=56.65 E-value=22 Score=22.66 Aligned_cols=48 Identities=15% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.+||++.++. ||..-.++-++. .-..|.+.|||.| |.|.+.|.+
T Consensus 11 ~~~te~~l~~~F~~-~G~~v~~v~i~~----d~~t~~~rg~aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 11 QAATEDDIRGQLQS-HGVQAREVRLMR----NKSSGQSRGFAFVEFSHLQDATR 59 (91)
T ss_dssp SSCCHHHHHHHHHH-HTCCCSBCCSSS----CSSSCCCSSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCCEeEEEEEEe----cCCCCCcCceEEEEecCHHHHHH
Confidence 56788999999854 563012332332 2345677788877 788777665
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=55.81 E-value=37 Score=21.59 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++. |...-..|.+.|||.| |.|.+.+..
T Consensus 33 ~~~t~~~l~~~f~-~~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~ 80 (106)
T 1p27_B 33 EEATEEDIHDKFA-EYGE-IKNIH----LNLDRRTGYLKGYTLVEYETYKEAQA 80 (106)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEE----EEECTTTSSEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCC-eEEEE----EEecCCCCceeeEEEEEECCHHHHHH
Confidence 4678889988884 4554 12222 3344455788899987 888777654
No 26
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=54.24 E-value=44 Score=22.08 Aligned_cols=51 Identities=10% Similarity=0.159 Sum_probs=32.9
Q ss_pred CCCcceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 1 m~~~~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
|++..++|++.. .+.+++.|.|.- |=+-..|.++.|...+++...+-|+|+
T Consensus 1 ~~~~~i~ikVk~------~~g~~v~~~vk~----~t~l~kl~~~y~~~~gi~~~~~rf~Fd 51 (91)
T 2io0_B 1 MANDHINLKVAG------QDGSVVQFKIKR----HTPLSKLMKAYCERQGLSMRQIRFRFD 51 (91)
T ss_dssp ---CEEEEEEEC------TTSCEEEEEEET----TSCTHHHHHHHHHHTTCCSTTEEEEET
T ss_pred CCCCeEEEEEEC------CCCCEEEEEECC----CChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 666678888874 234577888743 345678999999999994444455553
No 27
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=53.23 E-value=37 Score=20.90 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++ . ..+.+.|||.| |.|.+.+.+
T Consensus 18 ~~~t~~~l~~~f~~-~G~-v~~~~i~----~--~~g~~~g~afV~f~~~~~a~~ 63 (92)
T 2dgv_A 18 FDFTWKMLKDKFNE-CGH-VLYADIK----M--ENGKSKGCGVVKFESPEVAER 63 (92)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE----E--SSSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE----c--cCCCcceEEEEEECCHHHHHH
Confidence 45778899988865 553 1222222 2 35678888877 777776654
No 28
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.48 E-value=16 Score=21.82 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+.+||++.++. +|. =.++.++.+- ..|.+.|||.| |.|.+.+.
T Consensus 10 ~~~t~~~l~~~F~~-~G~-v~~v~i~~~~----~~~~~~g~afV~f~~~~~a~ 56 (77)
T 1uaw_A 10 WQTTQEGLREYFGQ-FGE-VKECLVMRDP----LTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp SSCCSHHHHHHHTT-TSC-CCCEEEECCC----CSSSCSSEEEECCCCTTHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEecCC----CCCCcCceEEEEEcCHHHHH
Confidence 46778899888854 554 2455444432 34567788877 56666554
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=52.46 E-value=31 Score=22.94 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++.+- .|.+.|||.| |+|.+.|.+
T Consensus 17 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~~-----~g~~~g~afV~F~~~~~A~~ 63 (116)
T 2fy1_A 17 RETNEKMLKAVFGK-HGP-ISEVLLIKDR-----TSKSRGFAFITFENPADAKN 63 (116)
T ss_dssp TTCCHHHHHHHHHT-SSC-CSEEEEECST-----TTTCCCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEECC-----CCCcccEEEEEECCHHHHHH
Confidence 45788899988854 554 2344444332 4667788877 777776654
No 30
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=52.01 E-value=6.4 Score=25.22 Aligned_cols=53 Identities=26% Similarity=0.478 Sum_probs=32.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
+-|-.. ....+.++|++.++..-.+ . + .++..-.| |.+.|||.| |.|.+.+.+
T Consensus 20 l~V~nL-p~~~t~~~l~~~F~~~G~v-~-~-~~~~~~~~----g~~~g~afV~f~~~~~a~~ 73 (101)
T 1fj7_A 20 LFIGNL-NPNKSVAELKVAISELFAK-N-D-LAVVDVRT----GTNRKFGYVDFESAEDLEK 73 (101)
T ss_dssp EEEECC-CTTSCHHHHHHHHHHHHHH-H-T-CCCCEEEE----ETTTTEEEEEESSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHHhCCc-c-e-EEEecCCC----CCcCcEEEEEECCHHHHHH
Confidence 344443 3567889999999776556 3 3 44444444 345566665 667665544
No 31
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=51.50 E-value=46 Score=21.47 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=36.1
Q ss_pred eeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 12 KFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 12 k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+|-..+-.-|. |..- ....+.+||++.++. ||. =.++-++ ..-..|.+.|||.| |.|.+.|.+
T Consensus 10 ~~~en~~~~gt~lf--V~nL-p~~~te~~L~~~F~~-~G~-I~~v~i~----~d~~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 10 HHHENLYFQGTNLI--VNYL-PQNMTQDELRSLFSS-IGE-VESAKLI----RDKVAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp ------CCCCSEEE--EESC-CTTCCHHHHHHHHHT-TSC-EEEEEEE----ECSSSCCEEEEEEEEESSHHHHHH
T ss_pred cccccccCCCCEEE--EeCC-CCCCCHHHHHHHHHh-cCC-EEEeEee----ecCCCCcccccEEEEECCHHHHHH
Confidence 34455444443333 4443 356788999988854 554 1233232 23345778899987 888887754
No 32
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=51.08 E-value=38 Score=22.48 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 37 SKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 37 sr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
..+||++.. ..||. =.++.++.. .-..+.+.|||.| |.|.+.|.
T Consensus 26 ~~~dl~~~f-~~~G~-V~~v~i~~~---~~~~~~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 26 LEVETKEEC-EKYGK-VGKCVIFEI---PGAPDDEAVRIFLEFERVESAI 70 (105)
T ss_dssp CHHHHHHHG-GGGSC-EEEEEEEEC---SSCCTTTSEEEEEEESSHHHHH
T ss_pred HHHHHHHHH-HhcCC-EEEEEEecC---CCCCCCCcEEEEEEECCHHHHH
Confidence 467888877 57776 344444332 2223567788877 77877654
No 33
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=50.91 E-value=25 Score=20.89 Aligned_cols=48 Identities=17% Similarity=0.387 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhc
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++-++. +|. =.++. +...-..|.+.|||.| |+|.+.+...
T Consensus 9 ~~~t~~~l~~~F~~-~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~a 57 (75)
T 2mss_A 9 VNTTVEDVKHYFEQ-FGK-VDDAM----LMFDKTTNRHRGFGFVTFESEDIVEKV 57 (75)
T ss_dssp SSCCHHHHHHHHHT-TSC-CSEEC----CCBCSSSTTSCBEEEEECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEE----EEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 56788899998865 554 22222 2233335678889877 7888877664
No 34
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.88 E-value=43 Score=20.92 Aligned_cols=54 Identities=28% Similarity=0.325 Sum_probs=33.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
+-|..- ....+.+||++.++. |+. -.+..++.. -..|.+.|||.| |.|.+.+.+
T Consensus 18 l~v~nL-p~~~t~~~l~~~F~~-~G~-v~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (98)
T 2cqp_A 18 IKVQNM-PFTVSIDEILDFFYG-YQV-IPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (98)
T ss_dssp EEEESC-CTTCCHHHHHHHTTT-SCC-CTTTCEEEE----CSSSCEEEEEEEEESCHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHH-cCC-ccceEEEEE----CCCCCeeeEEEEEECCHHHHHH
Confidence 334443 356788899888754 554 234444432 245678888877 778776654
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.86 E-value=28 Score=21.98 Aligned_cols=47 Identities=21% Similarity=0.474 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++.+- ..+.+.|||.| |+|.+.|..
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 1x5s_A 22 FDTNEQSLEQVFSK-YGQ-ISEVVVVKDR----ETQRSRGFGFVTFENIDDAKD 69 (102)
T ss_dssp TTCCHHHHHHHHHH-HSC-CCEEEECCCS----SSCSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEeCC----CCCCcccEEEEEECCHHHHHH
Confidence 56788999998865 454 2344333322 23556777776 777776643
No 36
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.15 E-value=26 Score=22.88 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
+-|-.. ....+.+||++-++ .+++ - ++.++.+ . .+.+.|||.| |.+.+.+.
T Consensus 18 l~V~nL-p~~~te~~l~~~F~-~~G~-~-~v~i~~d---~--~g~~~G~afV~F~~~~~a~ 69 (102)
T 1wez_A 18 VHMRGL-PYRATENDIYNFFS-PLNP-M-RVHIEIG---P--DGRVTGEADVEFATHEDAV 69 (102)
T ss_dssp EEEESC-CTTCCHHHHHHSSC-SCCC-S-EEEEEES---S--SSCEEEEEEEECSSSHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHH-HcCc-e-EEEEEEC---C--CCCEeeEEEEEECCHHHHH
Confidence 334443 34677889988774 4666 3 5555544 2 4788888887 55555443
No 37
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=49.45 E-value=17 Score=24.11 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=21.1
Q ss_pred hHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 47 RMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 47 ~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
..||. =.++.++.+ .+ +.+.|||.| |++.+.|.+
T Consensus 49 ~~~G~-V~~v~i~~~----~~-~~~~G~~fV~f~~~~~A~~ 83 (104)
T 1jmt_A 49 EKYGE-VEEMNVCDN----LG-DHLVGNVYVKFRREEDAEK 83 (104)
T ss_dssp HHTCC-EEEEEECCS----SS-SSSEEEEEEEESCHHHHHH
T ss_pred ccCCc-eEEEEEEeC----CC-CCccEEEEEEECCHHHHHH
Confidence 56676 334444432 12 478899988 888887753
No 38
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=49.26 E-value=49 Score=21.16 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=31.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
+-|... ....+.++|++.++ .||. |.-..+......|.+.|||.| |.|.+.+..
T Consensus 29 l~V~nl-p~~~t~~~l~~~F~-~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 83 (110)
T 1oo0_B 29 LFVTSI-HEEAQEDEIQEKFC-DYGE-----IKNIHLNLDRRTGFSKGYALVEYETHKQALA 83 (110)
T ss_dssp EEEESC-CTTCCHHHHHHHHG-GGSC-----EEEEECCBCTTTSSBCSEEEEEESSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHH-hcCC-----EEEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 334443 34678889988884 4554 111223333345677788876 777776654
No 39
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=49.15 E-value=45 Score=20.99 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++.+ +.|||.| |.|.+.+..
T Consensus 10 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~ 52 (101)
T 2hvz_A 10 TGAGKGELERAFSY-YGP-LRTVWIARN---------PPGFAFVEFEDPRDAED 52 (101)
T ss_dssp SSCSHHHHHHHHHH-HCC-CSEEEEESS---------SSSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEeeC---------CCCEEEEEECCHHHHHH
Confidence 45788999998865 454 245555554 5567766 666665544
No 40
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.03 E-value=32 Score=22.60 Aligned_cols=46 Identities=24% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++-++ .||. =.++.++. ... |.+.|||.| |+|.+.+.+
T Consensus 21 ~~~te~~L~~~F~-~~G~-v~~v~i~~----d~~-g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 21 TDATLDDIKEWLE-DKGQ-VLNIQMRR----TLH-KAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp TTCCHHHHHHHHH-TSSC-EEEEEEEC----CCT-TSCCCEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-hcCC-EEEEEEEE----CCC-CCCccEEEEEECCHHHHHH
Confidence 4678889998885 4564 22333332 223 677888876 888877755
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=48.15 E-value=48 Score=20.71 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++ .+......|.+.|||.| |+|.+.|..
T Consensus 12 ~~~t~~~l~~~F~~-~G~-i~~v----~i~~~~~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 12 YDQTEEQILDLCSN-VGP-VINL----KMMFDPQTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEE----ECCBCTTTCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEE----EEEeCCCCCccceEEEEEECCHHHHHH
Confidence 45678899888854 443 1122 22333345677888877 788777654
No 42
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=47.96 E-value=59 Score=21.70 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++. |...-..+.+.|||.| |+|.+.|.+
T Consensus 52 ~~~~~~~l~~~F~~-~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 52 TTVDEVQLRQLFER-YGP-IESVK----IVCDRETRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp TTCCHHHHHHHHHH-HSC-EEEEE----EEEETTTTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EEEcCCCCCcceEEEEEECCHHHHHH
Confidence 45778899988865 453 12222 2333346789999987 888877654
No 43
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.95 E-value=36 Score=22.58 Aligned_cols=57 Identities=14% Similarity=0.191 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHH-HhcC
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSA-KKFE 88 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~-kk~E 88 (134)
.+-|-.. ....+.+||++.++ .|+. -.+++++..- -.|.+.|||.| |.+.+.+ +.++
T Consensus 27 ~l~V~nL-p~~~te~~l~~~F~-~~G~-v~~~~~~~~~----~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 27 CVYLKGL-PFEAENKHVIDFFK-KLDI-VEDSIYIAYG----PNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp EEEEECC-CTTCCHHHHHHHSC-SSCB-CTTTCEEEEC----TTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred EEEEeCC-CCCCCHHHHHHHHH-hcCC-ccceEEEEEC----CCCCCCeEEEEEECCHHHHHHHHH
Confidence 3344443 35677889988885 4554 3453333322 24677888887 4554443 3344
No 44
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.64 E-value=18 Score=23.66 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++ ..--.+.+.|||.| |+|.+.+.+
T Consensus 27 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 74 (116)
T 2cqd_A 27 YHTTDASLRKYFE-GFGD-IEEAVVI----TDRQTGKSRGYGFVTMADRAAAER 74 (116)
T ss_dssp SSCCHHHHHHHHH-TTSC-EEEEEES----CCSSSCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-eeEEEEE----EcCCCCccceEEEEEECCHHHHHH
Confidence 4678899998885 4554 1222222 22223567777776 777777654
No 45
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.45 E-value=35 Score=21.51 Aligned_cols=44 Identities=27% Similarity=0.459 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++. . .++.++..- ..+.+.|||.| |.|.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~---~--~~~~~~~~~----~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2fc8_A 25 EDTTEETLKESFDG---S--VRARIVTDR----ETGSSKGFGFVDFNSEEDAKA 69 (102)
T ss_dssp TTCCHHHHHHTSTT---C--SEEEEEECS----SSCSEEEEEEEECSSHHHHHH
T ss_pred CccCHHHHHHHhcC---C--eEEEEEecC----CCCCcCcEEEEEECCHHHHHH
Confidence 45778888877752 2 233333332 34678888888 777777654
No 46
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=46.22 E-value=50 Score=20.38 Aligned_cols=47 Identities=28% Similarity=0.344 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++. |+. -.+..++.. -..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ek1_A 25 FTVSIDEILDFFYG-YQV-IPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (95)
T ss_dssp TTCCHHHHHHHTTT-SCB-CTTCCEEEE----CTTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-ccceEEEEe----CCCCCEeeEEEEEECCHHHHHH
Confidence 56788899988754 554 233444332 245678888887 777776653
No 47
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.70 E-value=52 Score=20.37 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++.. +. -.+.+++ .+.|||.| |+|.+.+.+
T Consensus 18 ~~~t~~~l~~~F~~~-G~-vv~~~~~----------~~~g~afV~f~~~~~A~~ 59 (93)
T 2cqh_A 18 PAVTADDLRQLFGDR-KL-PLAGQVL----------LKSGYAFVDYPDQNWAIR 59 (93)
T ss_dssp TTCCHHHHHHHHHHT-TC-CCSSCEE----------EETTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHc-CC-ceEEEEE----------cCCCEEEEEECCHHHHHH
Confidence 457889999888654 43 2233333 25678877 777776644
No 48
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=45.49 E-value=54 Score=20.70 Aligned_cols=47 Identities=23% Similarity=0.457 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEec-CCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTH-FGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~-fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. +.-| .|... -..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v-~i~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 25 FQANQREIRELFST-FGE----LKTV-RLPKKMTGTGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEE-ECCCCCSSSCSSCSEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHc-cCC----eEEE-EEecCCCCCCCcCceEEEEECCHHHHHH
Confidence 46788899988854 553 1111 12222 235666777766 777776654
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=45.47 E-value=32 Score=21.91 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=29.1
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 27 DVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
-|-.- ..+.+.++|++.++.. |. =.++.++.+- ..+.+.|||.| |.+.+.+.
T Consensus 17 ~V~nl-p~~~t~~~l~~~F~~~-G~-i~~v~i~~~~----~~g~~~g~afV~f~~~~~A~ 69 (106)
T 2dgp_A 17 FIGQI-PRNLDEKDLKPLFEEF-GK-IYELTVLKDR----FTGMHKGCAFLTYCERESAL 69 (106)
T ss_dssp EEESC-CTTCCHHHHHHHHHHH-SC-CCEEECCCCS----SSCSCCSEEEEEESSHHHHH
T ss_pred EEeCC-CCCCCHHHHHHHHHhc-CC-eeEEEEEecC----CCCCcceEEEEEECCHHHHH
Confidence 34443 3568889999988654 53 1333333222 23456667766 56665554
No 50
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.18 E-value=56 Score=20.61 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++ ..-..+.+.|||.| |+|.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~ 72 (103)
T 2cqg_A 25 WKTTEQDLKEYFST-FGE-VLMVQVK----KDLKTGHSKGFGFVRFTEYETQVK 72 (103)
T ss_dssp SSCCHHHHHHHHGG-GSC-EEEEEEE----ECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHh-cCC-eEEEEEE----ecCCCCCccceEEEEECCHHHHHH
Confidence 46788899888844 554 1233333 33334778888887 777776654
No 51
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=44.85 E-value=78 Score=23.51 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.|...+.. --.++-|.=++ .+.+.|||.| |.+.+.+..
T Consensus 19 ~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~ 67 (282)
T 3pgw_A 19 EKIKKDELKKSLYAIFSQ-FGQILDILVSR----SLKMRGQAFVIFKEVSSATN 67 (282)
T ss_pred CCCCHHHHHHHHHHHHhc-cCCeEEEEEcC----CCCcceEEEEEECCHHHHHH
Confidence 567888998766666654 22333332222 3456666665 666665543
No 52
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.59 E-value=25 Score=22.98 Aligned_cols=47 Identities=13% Similarity=0.320 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+ ..||. =.++.++.+ -..+.+.|||.| |++.+.+..
T Consensus 37 ~~~te~~l~~~F-~~~G~-i~~v~i~~~----~~~g~~~g~afV~f~~~~~a~~ 84 (116)
T 1x4b_A 37 FETTEESLRNYY-EQWGK-LTDCVVMRD----PASKRSRGFGFVTFSSMAEVDA 84 (116)
T ss_dssp TCCCHHHHHHHH-TSSCC-CSEEEEECC----TTTSSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-EEEEEEEEC----CCCCCcCceEEEEeCCHHHHHH
Confidence 567888999888 45554 234444433 233567777766 677766544
No 53
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.51 E-value=40 Score=20.48 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhc
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++.+. .||. =.++ .+...-..+.+.|||.| |+|.+.+...
T Consensus 15 ~~~t~~~l~~~f~-~~G~-i~~~----~i~~~~~~~~~~g~afV~f~~~~~a~~A 63 (85)
T 1x4e_A 15 PGTTDQDLVKLCQ-PYGK-IVST----KAILDKTTNKCKGYGFVDFDSPSAAQKA 63 (85)
T ss_dssp TTCCHHHHHTTST-TTSC-EEEE----EEECCSSSCSCCSEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEE----EEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 4567778876664 3443 1222 22333345677888877 7888777543
No 54
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=44.43 E-value=66 Score=21.22 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+ ..||. =.++.++. .-..+.+.|||.| |+|.+.|.+
T Consensus 16 ~~~te~~L~~~F-~~~G~-i~~v~i~~----d~~tg~~rG~aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 16 DNVRETFLKDMC-RKYGE-VEEVEILL----HPRTRKHLGLARVLFTSTRGAKE 63 (110)
T ss_dssp TTCCHHHHHHHH-TTTSC-EEEEEEEE----CTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-eeEEEEEE----CCCCCceeeEEEEEECCHHHHHH
Confidence 567888998887 44564 23443433 3344788899877 788777654
No 55
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=44.01 E-value=17 Score=22.85 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.|...+.. -..+.-|.=.+ .|.+.|||.| |+|.+.+..
T Consensus 18 ~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~----~~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 18 EKIKKDELKKSLHAIFSR-FGQILDILVSR----SLKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp TTSCHHHHHHHHHHHHGG-GSCEEEEECCH----HHHHTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh-CCCEEEEEEEc----CCCcCcEEEEEeCCHHHHHH
Confidence 567888999644444433 22222222222 2445567766 777776644
No 56
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=43.90 E-value=52 Score=21.65 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=31.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
+-|... ....+.+||++.++. ||. =.++.++.+- .|.+.|||.| |.|.+.+.+
T Consensus 38 l~V~nl-p~~~t~~~l~~~F~~-~G~-v~~v~i~~~~-----~g~~~g~afV~f~~~~~A~~ 91 (124)
T 2kt5_A 38 LLVSNL-DFGVSDADIQELFAE-FGT-LKKAAVDYDR-----SGRSLGTADVHFERRADALK 91 (124)
T ss_dssp EEEESC-CSSCCHHHHHHHHHT-TSC-CSEEEEECCS-----SSSCCSEEEEEESSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHh-cCC-eeEEEEEECC-----CCCEeeEEEEEECCHHHHHH
Confidence 334443 356788999988865 554 2344443332 3566777776 777776654
No 57
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=43.57 E-value=29 Score=25.38 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.++|.++| .|+...-..|++.||+ +++.++++|
T Consensus 174 ~~ei~~~~---~~K~~~l~~l~~~lgi-~~~~~ia~G 206 (258)
T 2pq0_A 174 STDVLPAG---GSKAEGIRMMIEKLGI-DKKDVYAFG 206 (258)
T ss_dssp EEEEEESS---CCHHHHHHHHHHHHTC-CGGGEEEEC
T ss_pred eEEEEECC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 35566654 7899999999999999 777776654
No 58
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.35 E-value=60 Score=20.46 Aligned_cols=47 Identities=19% Similarity=0.376 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. |.-..|...-..+.+.|||.| |+|.+.|.+
T Consensus 25 ~~~t~~~l~~~f~-~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 72 (103)
T 2cq0_A 25 EDTRETDLQELFR-PFGS-----ISRIYLAKDKTTGQSKGFAFISFHRREDAAR 72 (103)
T ss_dssp TTCCHHHHHTTST-TTCC-----EEEEEEEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-----eEEEEEeecCCCCceeeEEEEEECCHHHHHH
Confidence 4677888887664 3443 222223333345678888877 777776654
No 59
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=43.09 E-value=13 Score=23.12 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhcC
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKFE 88 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~E 88 (134)
...+.++|++-++. +|. =.++.++.+- ..|.+.|||.| |+|.++.+.++
T Consensus 11 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~~----~~~~~~g~afV~f~~~~a~~a~~ 60 (90)
T 2ki2_A 11 YSATSEQVKELFSQ-FGK-VFNVKLIYDR----ETKKPKGFGFVEMQEESVSEAIA 60 (90)
T ss_dssp TTSSHHHHTTTHHH-HTC-CSEEEECCCS----SSCCCCEEEEEEECTTHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEEcC----CCCCcceEEEEEECCHHHHHHHH
Confidence 45788899988865 554 2344333322 23567777776 77777444443
No 60
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=42.96 E-value=60 Score=20.35 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCC--------eEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPN--------SIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~--------~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++ .+|. -.+ +-+ ...-..|.+.|||.| |.|.+.+.+
T Consensus 23 ~~~t~~~l~~~F~-~~G~-i~~~~~~~~~~v~i----~~~~~~g~~~G~afV~f~~~~~a~~ 78 (99)
T 2la6_A 23 ENVTIESVADYFK-QIGI-IKTNKKTGQPMINL----YTDRETGKLKGEATVSFDDPPSAKA 78 (99)
T ss_dssp SSCCHHHHHHHHT-TTSC-BCEETTTTEESEEE----EECTTTCSEEEEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHH-HhCC-EeeccccccccEEE----EecCCCCCeeeEEEEEECCHHHHHH
Confidence 4678899998885 4454 222 222 222345678889887 777776654
No 61
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.37 E-value=56 Score=20.77 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEE
Q 032760 35 NVSKAELKEKLARMYDVKDPNSIFV 59 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~ivV 59 (134)
+.+-.+++++|++..+++..+.-++
T Consensus 31 ~~TV~~LK~~i~~~~gip~~~qrL~ 55 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIGVPQSFQKLI 55 (92)
T ss_dssp SCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred cCcHHHHHHHHHHHHCcCHHHEEEE
Confidence 4677999999999999944444444
No 62
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.26 E-value=64 Score=20.48 Aligned_cols=48 Identities=23% Similarity=0.417 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcC-CCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYD-VKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~-~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++..-. + ..+.+. ...-+.|.+.|||.| |.|.+.+..
T Consensus 18 ~~~t~~~l~~~f~~~G~~v---~~v~i~--~~~~~~g~~~g~afV~f~~~~~A~~ 67 (109)
T 2dis_A 18 KMKKREEILEEIAKVTEGV---LDVIVY--ASAADKMKNRGFAFVEYESHRAAAM 67 (109)
T ss_dssp TTSCHHHHHHHHHHHSTTE---EEEECC--SSSCTTTTTCCEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHHhcCCc---eEEEEE--ccCCCCCCcCcEEEEEecCHHHHHH
Confidence 46788999988866533 3 222221 133345566777766 666665543
No 63
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.96 E-value=54 Score=21.73 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCC--CCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKD--PNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~--~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.|-|-.- ..+.+.+||++.+.. |+... .++.++.+ . . |.+.|||.| |.+.+.+.+
T Consensus 19 ~l~V~nL-p~~~te~~l~~~F~~-~G~~~~v~~v~i~~~---~-~-g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 19 VVKLRGL-PWSCSIEDVQNFLSD-CTIHDGVAGVHFIYT---R-E-GRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp EEEEESC-CTTCCHHHHHHHTTT-SCBTTGGGGEEEEEC---S-S-SCEEEEEEEEBSSHHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHHH-cCCccCceeEEEEEC---C-C-CCCCeEEEEEECCHHHHHH
Confidence 3445554 356788899988854 45301 23333332 2 2 678899987 777776654
No 64
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.47 E-value=60 Score=20.47 Aligned_cols=45 Identities=4% Similarity=0.115 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++.+ -+. +.|||.| |+|.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~----~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cqi_A 25 RDVTEVLILQLFSQ-IGP-CKSCKMITE----HTS--NDPYCFVEFYEHRDAAA 70 (103)
T ss_dssp TTCCHHHHHHHHHH-HSC-EEEEEEECC----CCS--SCCEEEEEESSHHHHHH
T ss_pred ccCCHHHHHHHHHh-cCC-EeEEEEEec----CCC--CCCEEEEEECCHHHHHH
Confidence 45788999988855 453 134444443 122 3567765 677666543
No 65
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=41.38 E-value=9.5 Score=22.85 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++-+.. +|. =.++.++ .....+.+.|||.| |.|.+.+..
T Consensus 9 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 1iqt_A 9 PDTPEEKIREYFGG-FGE-VESIELP----MDNKTNKRRGFCFITFKEEEPVKK 56 (75)
T ss_dssp SSCCHHHHHHHHHH-HSC-CSEECCC----CSCCCSSSCCCEEEECSSSHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEE----ecCCCCCcCCEEEEEECCHHHHHH
Confidence 45678899988865 554 2333322 22234567777776 666655544
No 66
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.29 E-value=65 Score=20.29 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++ .+...-..+.+.|||.| |+|.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (105)
T 1x5u_A 25 EKVSEPLLWELFLQ-AGP-VVNT----HMPKDRVTGQHQGYGFVEFLSEEDADY 72 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEE----ECCBCSSSCSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEE----EEEecCCCCcCCcEEEEEECCHHHHHH
Confidence 46788899888855 443 1122 22232234567777766 677766654
No 67
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=41.18 E-value=41 Score=24.41 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 35 NVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
..++...-..|++.+|+ +++.++++|
T Consensus 198 ~~~K~~~l~~l~~~lgi-~~~~~i~~G 223 (274)
T 3fzq_A 198 DFHKGKAIKRLQERLGV-TQKETICFG 223 (274)
T ss_dssp TCSHHHHHHHHHHHHTC-CSTTEEEEC
T ss_pred CCCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 36889999999999999 777666654
No 68
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=40.81 E-value=28 Score=24.10 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHH---hHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLA---RMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA---~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+..++++.|- ..||. =.+ |.+ .. .+.+.|||.| |+|.+.|.
T Consensus 39 ~~~~e~~L~~~L~~~F~~~G~-I~~-v~i--~~----~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 39 PEVPKEKLQALLYALASSQGD-ILD-IVV--DL----SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp TTSCHHHHHHHHHHHHHHHSC-EEE-EEE--CC----CCSSCCCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCC-eEE-EEe--cc----CCCcCCEEEEEECCHHHHH
Confidence 5677888886443 45554 112 222 12 2456677766 77766553
No 69
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=40.66 E-value=17 Score=32.43 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=33.2
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcC--CCCCCeEEEeceEecCCCC
Q 032760 28 VLHPGRANVSKAELKEKLARMYD--VKDPNSIFVFKFRTHFGGG 69 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~--~~~~~~ivV~~~~T~fG~g 69 (134)
+.-.+-+..-+.+|+++|++.|+ . ++++|+|..-.||-|-+
T Consensus 61 ~D~~~~~~~v~~~V~~~L~~~~g~~~-~~~nV~isaTHTHSgP~ 103 (646)
T 2zws_A 61 TDLGMIFQAVHLKVLARLKAKYPGVY-DENNVMLAATHTHSGPG 103 (646)
T ss_dssp ESSSCCCHHHHHHHHHHHHHHSTTTC-CTTTEEEEECCBSBEEC
T ss_pred ECcccCCHHHHHHHHHHHHHHhCCCC-ChhHEEEEeeeeCCCCc
Confidence 33333344457899999999999 8 99999999999999976
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=40.56 E-value=55 Score=22.24 Aligned_cols=47 Identities=23% Similarity=0.435 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++ .||. =.++.++ .....+.+.|||.| |++.+.+.+
T Consensus 56 ~~~te~~L~~~F~-~~G~-I~~v~i~----~d~~tg~~~G~afV~F~~~~~A~~ 103 (129)
T 2kxn_B 56 LYTTERDLREVFS-KYGP-IADVSIV----YDQQSRRSRGFAFVYFENVDDAKE 103 (129)
T ss_dssp TSCCHHHHHHHHT-TTSC-EEEEEEE----CCSSSSCCCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEE----ecCCCCccceEEEEEECCHHHHHH
Confidence 4577889888884 4554 1233333 22234567777776 778777654
No 71
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=40.49 E-value=87 Score=21.51 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+. .||. =.++.+ ...-..|.+.|||.| |+|.+.|.+
T Consensus 114 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 114 EDTEEHHLRDYFE-QYGK-IEVIEI----MTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-cCCC-eEEEEE----eecCCCCCccceEEEEECCHHHHHH
Confidence 4567888888774 4554 122222 223345778888887 777776653
No 72
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.39 E-value=66 Score=20.09 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++. ||. =.++.++ ..-..+.+.|||.| |+|.+.+.+
T Consensus 20 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 67 (99)
T 2dgs_A 20 HNCGETELREYFKK-FGV-VTEVVMI----YDAEKQRPRGFGFITFEDEQSVDQ 67 (99)
T ss_dssp SSCCHHHHHHHHSS-SSC-EEEEEEC----CCTTTCSCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEE----eCCCCCCCCceEEEEECCHHHHHH
Confidence 46788899888854 453 1232222 22234566777766 777776654
No 73
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.96 E-value=65 Score=19.85 Aligned_cols=47 Identities=19% Similarity=0.468 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++ ..-..+.+.|||.| |.|.+.+.+
T Consensus 15 ~~~t~~~l~~~f~~-~G~-v~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 62 (95)
T 2dnz_A 15 FNITEDMLRGIFEP-FGK-IDNIVLM----KDSDTGRSKGYGFITFSDSECARR 62 (95)
T ss_dssp TTCCHHHHHHHHTT-TSC-EEEEEEE----CCSSSCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EeEEEEe----ecCCCCceeeEEEEEECCHHHHHH
Confidence 45788899888844 443 1233333 22234667777766 777777654
No 74
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.93 E-value=64 Score=19.80 Aligned_cols=47 Identities=23% Similarity=0.464 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++ ..-..+.+.|||.| |++.+.+.+
T Consensus 25 ~~~t~~~l~~~f~~-~G~-v~~v~i~----~~~~~~~~~g~afV~f~~~~~A~~ 72 (95)
T 2cqc_A 25 LYTTERDLREVFSK-YGP-IADVSIV----YDQQSRRSRGFAFVYFENVDDAKE 72 (95)
T ss_dssp SSCCHHHHHHHHHT-TSC-EEEEEEE----ECSSSSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEEE----EcCCCCCcccEEEEEECCHHHHHH
Confidence 45788899988855 554 1233333 33344678888877 788777654
No 75
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=39.92 E-value=51 Score=21.47 Aligned_cols=47 Identities=15% Similarity=0.279 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+. .||. =.++.++ ..-..|.+.|||.| |.|.+.+.+
T Consensus 35 ~~~te~~L~~~F~-~~G~-i~~v~i~----~~~~tg~~kg~afV~f~~~~~A~~ 82 (109)
T 2rs2_A 35 WQTTQEGLREYFG-QFGE-VKECLVM----RDPLTKRSRGFGFVTFMDQAGVDK 82 (109)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEC----CCTTTCCCTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-ccCC-eEEEEEE----ECCCCCCcCcEEEEEECCHHHHHH
Confidence 5678889888774 4554 1222222 22234667778776 777776654
No 76
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=39.83 E-value=77 Score=20.70 Aligned_cols=45 Identities=13% Similarity=0.392 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.++ .||. =.++-++.+ .+.+.|||.| |++.+.|.+
T Consensus 15 ~~~te~~L~~~F~-~~G~-v~~v~i~~d------~~~~kg~afV~f~~~~~A~~ 60 (115)
T 4f25_A 15 KSIDNKALYDTFS-AFGN-ILSCKVVCD------ENGSKGYGFVHFETQEAAER 60 (115)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEEEEE------TTEEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCC-EEEEEEeec------CCCCCceEEEEECCHHHHHH
Confidence 5678889998874 5664 233333332 2346788876 777776644
No 77
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.72 E-value=21 Score=23.82 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
+..+.++|++.++ .||. =.++.++ +.+.|||.| |++.+.|.
T Consensus 27 ~~~te~~L~~~F~-~~G~-V~~v~i~---------~~~rGfaFVeF~~~~~A~ 68 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGE-VLNLVLS---------SKKPGTAVVEFATVKAAE 68 (100)
T ss_dssp CSCCHHHHHHHHH-TTSC-EEEEEEE---------SSSSSEEEEEESCHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEc---------cCCCCEEEEEECCHHHHH
Confidence 4567889988885 5554 2333333 356778876 66666543
No 78
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=39.65 E-value=91 Score=21.67 Aligned_cols=54 Identities=17% Similarity=0.323 Sum_probs=32.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCC--CCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKD--PNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~--~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
+-|-.- ..+.+.+||++-++. ++.-+ .++.++.+ . - |.+.|||.| |+|.+.+.+
T Consensus 47 lfVgnL-p~~~te~dL~~~F~~-~G~v~~v~~v~i~~d---~-~-g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 47 VKLRGL-PWSCSVEDVQNFLSD-CTIHDGAAGVHFIYT---R-E-GRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp EEEESC-CTTCCHHHHHHHTTT-CCCSSSSTTEEEEEC---S-S-SCEEEEEEEECSSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHH-hCCcCceeEEEEEEC---C-C-CCCCeEEEEEECCHHHHHH
Confidence 344443 356788899988855 55301 24444433 1 2 778899987 667666643
No 79
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=39.64 E-value=60 Score=22.23 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=28.6
Q ss_pred CCCcceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCe
Q 032760 1 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNS 56 (134)
Q Consensus 1 m~~~~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ 56 (134)
|++ .|+|.+..- .++ ..+++..+ ++-+-.+|+++|+...|+ +++.
T Consensus 3 m~~-~v~l~V~~~-~~~------~~~e~~v~--~~~TV~~lK~ki~~~~Gi-p~~~ 47 (122)
T 1t0y_A 3 MTE-VYDLEITTN-ATD------FPMEKKYP--AGMSLNDLKKKLELVVGT-TVDS 47 (122)
T ss_dssp CCC-EEEEEEEES-SCC------SCEEEEEE--TTSBHHHHHHHHHHHHCC-CTTT
T ss_pred CCC-EEEEEEEEC-CCC------ccEEEEeC--CCCcHHHHHHHHHHHhCC-CHHH
Confidence 666 577776653 222 12223333 456779999999999999 5554
No 80
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.61 E-value=32 Score=21.75 Aligned_cols=47 Identities=13% Similarity=0.294 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++.+ ...+.+.|||.| |.|.+.|.+
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~v~i~~~----~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2cqb_A 22 EEVDDKVLHAAFIP-FGD-ITDIQIPLD----YETEKHRGFAFVEFELAEDAAA 69 (102)
T ss_dssp SSCCHHHHHHHHTT-TSC-CCCEECCCC----SSSCCCSSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHhhc-cCC-EEEEEEEec----CCCCCcceEEEEEECCHHHHHH
Confidence 45778899988855 554 244444333 233567778877 667666544
No 81
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=39.42 E-value=71 Score=20.89 Aligned_cols=47 Identities=19% Similarity=0.382 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.++ .||. =.++ .|......+.+.|||.| |.|.+.|..
T Consensus 32 ~~~t~~~l~~~F~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 79 (126)
T 3ex7_B 32 EEATEEDIHDKFA-EYGE-IKNI----HLNLDRRTGYLKGYTLVEYETYKEAQA 79 (126)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEE----ECCBCTTTSSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEE----EEEecCCCCccceEEEEEECCHHHHHH
Confidence 5678899998885 4553 1122 22222235666777766 777766543
No 82
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=39.37 E-value=98 Score=21.77 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.+ ..||. .+++-| .|...--.|.+.|||.| |+|.+.+.+
T Consensus 65 ~~~te~~L~~~F-~~~G~--i~v~~v-~i~~d~~tg~skGfaFV~f~~~~~A~~ 114 (156)
T 3n9u_C 65 WWTTDQQLIQVI-RSIGV--YDVVEL-KFAENRANGQSKGYAEVVVASENSVHK 114 (156)
T ss_dssp TTCCHHHHHHHH-HHTTC--CCEEEE-EEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-HHHCC--ccEEEE-EEEecCCCCccceEEEEEECCHHHHHH
Confidence 567888999888 55662 011111 22222335778899988 888876643
No 83
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.33 E-value=71 Score=20.11 Aligned_cols=45 Identities=18% Similarity=0.468 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++.+ -+. +.|||.| |++.+.|.+
T Consensus 25 ~~~t~~~l~~~f~~-~G~-v~~v~i~~~----~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cq3_A 25 FRFRDPDLRQMFGQ-FGK-ILDVEIIFN----ERG--SKGFGFVTFENSADADR 70 (103)
T ss_dssp TTCCHHHHHHHGGG-TSC-EEEEEEECC----TTT--TCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEec----CCC--CcEEEEEEECCHHHHHH
Confidence 56788899888854 554 123333322 122 6677766 777776654
No 84
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.60 E-value=67 Score=20.58 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++.+ . .+.+.|||.| |.|.+.+..
T Consensus 25 ~~~~~~~l~~~f~-~~G~-i~~~~i~~~---~--~g~~~g~afV~f~~~~~a~~ 71 (114)
T 2do0_A 25 YKVGWKKLKEVFS-MAGV-VVRADILED---K--DGKSRGIGTVTFEQSIEAVQ 71 (114)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEEEC---T--TCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEEC---C--CCCeeeEEEEEECCHHHHHH
Confidence 4578889988775 4553 123333222 2 2677788876 677666543
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=38.48 E-value=83 Score=20.70 Aligned_cols=47 Identities=13% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++. +......+.+.|||.| |+|.+.+.+
T Consensus 73 ~~~~~~~l~~~f~~-~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~ 120 (140)
T 2ku7_A 73 EEVDDKVLHAAFIP-FGD-ITDIQ----IPLDYETEKHRGFAFVEFELAEDAAA 120 (140)
T ss_dssp TTCCHHHHHHHHGG-GSC-EEEEE----CCCCTTTCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEE----EeecCCCCCcCcEEEEEECCHHHHHH
Confidence 45778899888854 554 12222 2222234567788876 777777654
No 86
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.47 E-value=71 Score=19.88 Aligned_cols=47 Identities=11% Similarity=0.197 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCC-CeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDP-NSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~-~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+.. |+. -. ++-++.+ -..+.+.|||.| |.|.+.+.+
T Consensus 19 ~~~t~~~l~~~F~~-~G~-i~~~v~i~~~----~~~g~~~g~afV~f~~~~~a~~ 67 (99)
T 2div_A 19 PYMDENFISRAFAT-MGE-TVMSVKIIRN----RLTGIPAGYCFVEFADLATAEK 67 (99)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCCEEEEEEC----SSSCCEEEEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-cceEEEEeec----CCCCCcCCEEEEEeCCHHHHHH
Confidence 56788999988855 553 23 4444432 235678889887 777776654
No 87
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=38.36 E-value=65 Score=19.41 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++ .||. =.++.+ ...-..+.+.|||.| |+|.+.+..
T Consensus 16 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~ 63 (87)
T 3bs9_A 16 PEITTAAIAAAFA-PFGR-ISDARV----VKDMATGKSKGYGFVSFFNKWDAEN 63 (87)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EeEEEE----EecCCCCccceEEEEEECCHHHHHH
Confidence 4678899998885 4554 123222 233345678888877 777777654
No 88
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=38.35 E-value=74 Score=23.75 Aligned_cols=46 Identities=22% Similarity=0.426 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.+.+..+|++.++ .||. =.++.++.+ ..|.+.|||.| |+|.+.|.+
T Consensus 106 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~-----~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 106 PVVSNELLEQAFS-QFGP-VEKAVVVVD-----DRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEEEEE-----TTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEeeeC-----CCCCcCcEEEEEeCCHHHHHH
Confidence 4567889998884 5665 234444433 24667888876 777766543
No 89
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=37.96 E-value=24 Score=21.94 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.+... .+ .++.+ . .+.|||.| |+|.+.+..
T Consensus 15 ~~~t~~~l~~~F~~~-~v--~~~~i-~---------~~~g~afV~f~~~~~a~~ 55 (88)
T 1wg1_A 15 QDSNCQEVHDLLKDY-DL--KYCYV-D---------RNKRTAFVTLLNGEQAQN 55 (88)
T ss_dssp SSCCHHHHHHHTCSS-CC--CCEEE-E---------GGGTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Ce--EEEEE-e---------CCCcEEEEEECCHHHHHH
Confidence 567788999888766 66 33333 2 56677776 667665543
No 90
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=37.93 E-value=74 Score=19.96 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++-+ ..||. =.++.++.+ . .|.+.|||.| |+|.+.+.
T Consensus 19 ~~~t~~~l~~~F-~~~G~-i~~v~i~~~---~--~g~~~g~afV~f~~~~~a~ 64 (102)
T 2xs2_A 19 VRMDETEIRSFF-ARYGS-VKEVKIITD---R--TGVSKGYGFVSFYNDVDVQ 64 (102)
T ss_dssp TTCCHHHHHHHH-GGGSC-EEEEEEEEC---T--TSCEEEEEEEEESSCCCHH
T ss_pred CCCCHHHHHHHH-HhCCC-eEEEEEEEC---C--CCCccceEEEEECCHHHHH
Confidence 467888998877 44554 123333222 2 5678888877 55544443
No 91
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=37.85 E-value=73 Score=19.82 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++ .|......+.+.|||.| |.|.+.+.+
T Consensus 18 ~~~t~~~l~~~F~~-~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 65 (99)
T 1whw_A 18 YTSSEEDLEKLFSA-YGP-LSEL----HYPIDSLTKKPKGFAFVTFMFPEHAVK 65 (99)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEE----ECCCCTTTCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EeEE----EEEecCCCCCcCeEEEEEECCHHHHHH
Confidence 46788899988854 453 1122 22222234667777766 777776654
No 92
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=37.53 E-value=87 Score=20.66 Aligned_cols=47 Identities=21% Similarity=0.430 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+ ..||. =.++.++ .....|.+.|||.| |+|.+.|.+
T Consensus 97 ~~~t~~~l~~~f-~~~G~-i~~~~i~----~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 97 VNVDDETLRNAF-KDFPS-YLSGHVM----WDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp TTCCHHHHHHHH-TTSTT-EEEEEEE----ECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-hccCC-eeEEEEE----ecCCCCCcceEEEEEeCCHHHHHH
Confidence 456788998888 44554 2233333 23345778888877 777777654
No 93
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.51 E-value=80 Score=20.23 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+.. ||. =.++-++ ..- .+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~~-~G~-i~~~~i~----~~~-~g~~~g~afV~f~~~~~a~~ 81 (114)
T 1x5o_A 35 LSMDEQELENMLKP-FGQ-VISTRIL----RDS-SGTSRGVGFARMESTEKCEA 81 (114)
T ss_dssp TTCCHHHHHHTTTT-TSC-EEEEEEE----ECS-SSCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE----ECC-CCCcceEEEEEECCHHHHHH
Confidence 45678888877743 443 1222222 222 5778888887 777776653
No 94
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.39 E-value=75 Score=19.85 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++. ||. =.++.++. .- .+.+.|||.| |++.+.|.+
T Consensus 27 ~~~t~~~l~~~F~~-~G~-i~~v~i~~----~~-~g~~~g~afV~f~~~~~a~~ 73 (100)
T 2do4_A 27 FSCTKEELEEICKA-HGT-VKDLRLVT----NR-AGKPKGLAYVEYENESQASQ 73 (100)
T ss_dssp TTCCHHHHHHHHTT-TSC-EEEEEEEE----CT-TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC-eEEEEEEE----CC-CCCEEeEEEEEECCHHHHHH
Confidence 45788899888854 553 12222222 22 5778888877 788777654
No 95
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.21 E-value=63 Score=20.91 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe
Q 032760 34 ANVSKAELKEKLARMYDVKDPNS 56 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ 56 (134)
++-+-.+|+++|+...|+ +++.
T Consensus 27 ~~~TV~~lK~ki~~~~gi-p~~~ 48 (95)
T 1v6e_A 27 RSLTIAEFKCKLELVVGS-PASC 48 (95)
T ss_dssp TTSBHHHHHHHHHHHTCS-CTTT
T ss_pred ccCHHHHHHHHHHHHHCC-CHHH
Confidence 456679999999999999 5443
No 96
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.92 E-value=44 Score=22.37 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=33.3
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 24 FVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 24 i~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
..+-|..- ..+.+.+||++-+... ++ .++.++.+ .- |.+.|||.| |.+.+.+.+
T Consensus 17 ~~v~V~nL-p~~~te~dl~~~F~~~-~v--~~v~i~~d---~~--g~~~G~afV~F~~~~~a~~ 71 (109)
T 2dnn_A 17 LYVSVHGM-PFSAMENDVRDFFHGL-RV--DAVHLLKD---HV--GRNNGNGLVKFLSPQDTFE 71 (109)
T ss_dssp HEEEEECC-CSSCCHHHHHHHTTTS-CC--CEEEECCC---TT--CCCCSEEEEECSSHHHHHH
T ss_pred CEEEEeCC-CCCCCHHHHHHHhccC-Ce--eEEEEEEC---CC--CCCCeEEEEEECCHHHHHH
Confidence 34445553 3567889999998765 66 45555543 22 567778777 556555543
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=36.90 E-value=99 Score=21.09 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.+ ...-..+.+.|||.| |+|.+.|.+
T Consensus 49 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~ 96 (156)
T 1h2v_Z 49 FYTTEEQIYELFS-KSGD-IKKIIM----GLDKMKKTACGFCFVEYYSRADAEN 96 (156)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEE----EecCCCCccceEEEEEECCHHHHHH
Confidence 4677889988884 4553 123333 333345678888877 778776654
No 98
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.82 E-value=11 Score=24.91 Aligned_cols=49 Identities=8% Similarity=0.186 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. = ..+++..-.|. ..|.+.|||.| |++.+.|.+
T Consensus 18 ~~~te~~L~~~F~-~~G~-i-~~~~~~~~~~~-~~g~~~G~aFV~f~~~~~a~~ 67 (114)
T 2dnl_A 18 PDIDEDEITASFR-RFGP-L-VVDWPHKAESK-SYFPPKGYAFLLFQEESSVQA 67 (114)
T ss_dssp TTCCHHHHHHHTT-TTCC-C-CEECTTSSSSC-CCSCTTSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-E-EEEEeecCCCC-CCCCcccEEEEEECCHHHHHH
Confidence 5678889988875 4554 1 23333222221 12678889987 888887654
No 99
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.70 E-value=31 Score=22.28 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCC-------CeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDP-------NSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~-------~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+.-.. ++-++. .-..+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~----~~~~g~~~g~afV~f~~~~~A~~ 80 (113)
T 2cpe_A 25 DSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYL----DKETGKPKGDATVSYEDPPTAKA 80 (113)
T ss_dssp TTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCB----CTTTCSBCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCEeEccccCccCEEEEE----eCCCCCeeeEEEEEECCHHHHHH
Confidence 46778899888854 444021 233322 2234567778877 777776654
No 100
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=36.63 E-value=68 Score=21.68 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=31.6
Q ss_pred eeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceE
Q 032760 13 FMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFR 63 (134)
Q Consensus 13 ~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~ 63 (134)
+....|+...+++|.|.- ..++.||++++-++|++ ++.=|..+.
T Consensus 13 EKa~~~~e~n~~~F~V~~----~AnK~qIK~aVe~lf~V---kV~~VnT~~ 56 (92)
T 3tve_T 13 EKAYAGFAEGKYTFWVHP----KATKTEIKNAVETAFKV---KVVKVNTLH 56 (92)
T ss_dssp HHHHTTTTTTEEEEEECT----TCCHHHHHHHHHHHTTC---CEEEEEEEE
T ss_pred HHHHHHhhCCEEEEEECC----CCCHHHHHHHHHHHhCC---ceeeeeeee
Confidence 344566777888888754 36799999999999999 444444443
No 101
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=36.04 E-value=36 Score=21.19 Aligned_cols=42 Identities=33% Similarity=0.364 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+.. ++. ... + ...+.+.|||.| |.|.+.+.+
T Consensus 26 ~~~t~~~l~~~F~~-~g~--v~~--~------~~~~~~~g~afV~f~~~~~a~~ 68 (96)
T 1fjc_A 26 FNITEDELKEVFED-ALE--IRL--V------SQDGKSKGIAYIEFKSEADAEK 68 (96)
T ss_dssp SSCCHHHHHHHHCS-EEE--ECC--E------EETTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHhh-CCc--EEE--e------CCCCCcceEEEEEECCHHHHHH
Confidence 45688898887755 332 111 1 345688899988 777776654
No 102
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=35.90 E-value=38 Score=21.39 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.+-|-+- ....+.++|++.++ .||. =.++.++. .+.|||.| |++.+.|..
T Consensus 13 ~l~V~~L-p~~~te~~L~~~F~-~~G~-i~~v~i~~---------~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 13 KVFVGRC-TEDMTAEELQQFFC-QYGE-VVDVFIPK---------PFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp EEEEESC-CTTCCHHHHHHHHT-TTSC-EEEEECCS---------SCCSEEEEEESCHHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHh-ccCC-EEEEEEee---------CCCCEEEEEECCHHHHHH
Confidence 3444444 45678889988884 4564 22333332 27788877 899998874
No 103
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.79 E-value=52 Score=20.35 Aligned_cols=47 Identities=17% Similarity=0.354 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe-EEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNS-IFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~-ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++ -++.+ -..+.+.|||.| |.|.+.|.+
T Consensus 15 ~~~t~~~l~~~F~~-~G~-i~~~~~i~~~----~~~g~~~g~afV~f~~~~~A~~ 63 (96)
T 1x5t_A 15 PEIDEKLLYDTFSA-FGV-ILQTPKIMRD----PDTGNSKGYAFINFASFDASDA 63 (96)
T ss_dssp TTCCHHHHHHHHHT-TSC-BSSCCEECCC----TTTCSCCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEEEEEc----CCCCCcCeEEEEEECCHHHHHH
Confidence 45778899988865 554 2344 33322 234556677766 777776654
No 104
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=35.70 E-value=1.1e+02 Score=21.24 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++ .||. =.++ .|...-..|.+.|||.| |.+.+.|..
T Consensus 82 ~~~t~~~L~~~F~-~~G~-i~~v----~i~~~~~~g~~~g~afV~f~~~~~A~~ 129 (165)
T 1rk8_A 82 EEAQEDEIQEKFC-DYGE-IKNI----HLNLDRRTGFSKGYALVEYETHKQALA 129 (165)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEE----EEEECTTTSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHhh-cCCC-EEEE----EEEecCCCCcEeeEEEEEECCHHHHHH
Confidence 4568889988884 4554 1222 23333345678888887 777776653
No 105
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.36 E-value=73 Score=19.92 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. ||. = ...++. | .+.|||.| |+|.+.+.+
T Consensus 29 ~~~t~~~l~~~F~~-~G~-v-~~~~~~------~--~~~g~afV~f~~~~~a~~ 71 (97)
T 2e5j_A 29 RDARVSDLKRALRE-LGS-V-PLRLTW------Q--GPRRRAFLHYPDSAAAQQ 71 (97)
T ss_dssp TTCCHHHHHHHHHH-TTC-C-CSEEEE------E--TTTTEEEEECSSHHHHHH
T ss_pred CcCcHHHHHHHHHh-cCC-E-EEEEEc------C--CCCcEEEEEECCHHHHHH
Confidence 56788899988854 554 1 233332 2 45567766 777776543
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.23 E-value=57 Score=21.00 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=28.0
Q ss_pred EEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 23 QFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 23 Ei~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+-|-.. ....+.+||++.+. .|+. =.++-++.+ |||.| |.+.+.|.
T Consensus 15 ~~~l~V~nL-p~~~t~~~l~~~F~-~~G~-i~~~~i~~~-----------g~afV~f~~~~~a~ 64 (108)
T 1x4c_A 15 ENRVVVSGL-PPSGSWQDLKDHMR-EAGD-VCYADVYRD-----------GTGVVEFVRKEDMT 64 (108)
T ss_dssp CCEEEEESC-CSSCCHHHHHHHHG-GGSC-EEEEEEETT-----------TEEEEEESSHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHH-hcCC-EeEEEEecC-----------CEEEEEECCHHHHH
Confidence 344555554 36778899988775 4553 233333333 56655 66665443
No 107
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=34.96 E-value=48 Score=24.48 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=23.7
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 27 DVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
+|.++| .|+...-..|++.||+ +++.++++|
T Consensus 195 ei~~~~---~~K~~~l~~l~~~lgi-~~~~~i~~G 225 (290)
T 3dnp_A 195 NIVPKG---VSKEAGLALVASELGL-SMDDVVAIG 225 (290)
T ss_dssp EEEETT---CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEECC---CCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 455543 6889999999999999 777776664
No 108
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=34.93 E-value=49 Score=24.12 Aligned_cols=32 Identities=31% Similarity=0.282 Sum_probs=25.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
++|.++| .++...-+.|++.||+ +++.++.+|
T Consensus 186 ~ei~~~~---~~K~~~l~~l~~~lgi-~~~~~ia~G 217 (268)
T 3r4c_A 186 ADVNVAG---TSKATGLSLFADYYRV-KVSEIMACG 217 (268)
T ss_dssp EEEEETT---CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEeeCC---CCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 5566654 6899999999999999 777777665
No 109
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=34.76 E-value=33 Score=24.35 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=21.8
Q ss_pred EEEEEEcC-CCCCCCHHHHH-----HHHHhHcCCCCCCeEEE
Q 032760 24 FVIDVLHP-GRANVSKAELK-----EKLARMYDVKDPNSIFV 59 (134)
Q Consensus 24 i~~~v~H~-g~~Tpsr~eI~-----~kLA~~~~~~~~~~ivV 59 (134)
+.+.=.|| |.++||.+|+. ...++++++.=-|-|||
T Consensus 71 vIl~HNHPSG~~~PS~~D~~~T~~l~~a~~ll~I~llDHiIi 112 (126)
T 2qlc_A 71 IILVHNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDHVIV 112 (126)
T ss_dssp EEEEEECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEEEEEEE
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEeeeEEE
Confidence 44445788 67999999875 23345566522344444
No 110
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=34.45 E-value=91 Score=19.97 Aligned_cols=47 Identities=17% Similarity=0.367 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.+ ......+.+.|||.| |++.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~~~~~g~afV~f~~~~~a~~ 72 (115)
T 2dgo_A 25 PEITTEDIKAAFA-PFGR-ISDARV----VKDMATGKSKGYGFVSFFNKWDAEN 72 (115)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEE----EEcCCCCCcceEEEEEECCHHHHHH
Confidence 4678889998885 5554 122222 233345778888877 677776654
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=34.21 E-value=99 Score=20.96 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=30.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
+-|... ....+.++|++.+ ..||. =.++.++.+ -..|.+.|||.| |.|.+.+.+
T Consensus 73 l~v~nl-~~~~~~~~l~~~F-~~~G~-v~~~~i~~~----~~~g~~~g~afV~f~~~~~a~~ 127 (158)
T 2kn4_A 73 LKVDNL-TYRTSPDTLRRVF-EKYGR-VGDVYIPRD----RYTKESRGFAFVRFHDKRDAED 127 (158)
T ss_dssp EEEESC-CTTCCHHHHHHHH-HHHSC-EEEEECCCC----SSCTTSCCEEEEEESBHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHH-HhcCC-eEEEEEeec----CCCCccceEEEEEECCHHHHHH
Confidence 334443 3567889999988 45564 122222222 124556777766 777766543
No 112
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.12 E-value=78 Score=20.35 Aligned_cols=47 Identities=11% Similarity=0.221 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.+. .||. =.++.++ ..-..+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~ 82 (114)
T 2cq4_A 35 ARIRPRDLEDFFS-AVGK-VRDVRII----SDRNSRRSKGIAYVEFCEIQSVPL 82 (114)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEC----CSCCSSSCCCCEEEEESCGGGHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EeEEEEE----ecCCCCccCcEEEEEeCcHHHHHH
Confidence 4577889888874 4553 1222222 22233567777776 777666554
No 113
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=33.96 E-value=1.4e+02 Score=22.07 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=39.6
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE---eCCHHHHHh
Q 032760 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI---YDSVDSAKK 86 (134)
Q Consensus 22 kEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I---Yds~e~~kk 86 (134)
.+++|.|.- .-++.||++.+-++|++ ++.=|..+... +|.=.+|+.. ||.+|-+.+
T Consensus 88 N~~vF~Vd~----kAnK~qIK~AVEklf~V---kV~kVNTl~~p--~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHN----RSTKPQIKSAFEKLYNV---KVRSVNTLNTI--TGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECT----TCCHHHHHHHHHHHHCC---CEEEEEEEECT--TSCEEEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcC----CCCHHHHHHHHHHHhCC---ceeEEEeeEcC--CCcEEEEEEcCCCCcHHHHHHh
Confidence 577887754 36799999999999999 56666666654 3555667766 566665544
No 114
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.92 E-value=58 Score=20.54 Aligned_cols=46 Identities=13% Similarity=0.201 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++.++ .||. =.++. |...-..+.+.|||.| |+|.+.|.
T Consensus 23 ~~~t~~~l~~~f~-~~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~ 69 (103)
T 2dnm_A 23 YRTSPDSLRRVFE-KYGR-VGDVY----IPREPHTKAPRGFAFVRFHDRRDAQ 69 (103)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEE----CCBCSSSCSBCSCEEEEESSSSHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEE----EEeCCCCCCCCeEEEEEECCHHHHH
Confidence 4578889988875 4443 12222 2222233556677766 66655543
No 115
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.88 E-value=34 Score=22.41 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=33.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhc
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKF 87 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~ 87 (134)
|-|... ....+.+||++.+.. ++.-+.++.++.+- .|.+.|||.| |.+.+.+.+.
T Consensus 18 l~V~nL-p~~~t~~~l~~~F~~-~g~v~~~v~i~~d~-----~g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 18 AHITNI-PFSITKMDVLQFLEG-IPVDENAVHVLVDN-----NGQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp EEEESC-CTTSCHHHHHHHTTT-SCCCSTTEEECCCT-----TSSCSSCEEEECSSHHHHHHH
T ss_pred EEEeCc-CCcCCHHHHHHHHHh-CCCcCCeEEEEECC-----CCCcceEEEEEECCHHHHHHH
Confidence 334443 356788899988855 46612445554432 4567788876 6777766553
No 116
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=33.87 E-value=80 Score=19.11 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.+ ..||. =.++.++ ..-..|.+.|||.| |.|.+.+.+
T Consensus 21 ~~~t~~~l~~~F-~~~G~-i~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~ 68 (87)
T 3s7r_A 21 WDTSKKDLKDYF-TKFGE-VVDCTIK----MDPNTGRSRGFGFILFKDAASVEK 68 (87)
T ss_dssp TTCCHHHHHHHH-TTTSC-EEEEEEE----ECTTTCCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHH-HhCCC-EEEEEEe----ecCCCCccccEEEEEECCHHHHHH
Confidence 456888998887 44554 1233332 22345678888887 677666544
No 117
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=33.58 E-value=60 Score=23.38 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.|-|... ....+.+||++.++. ||. =.++.++.+- .+.+.|||.| |++.+.|.+
T Consensus 90 ~l~V~nL-p~~~te~~L~~~F~~-~G~-I~~v~i~~d~-----~g~~kG~afV~F~~~~~A~~ 144 (177)
T 2f3j_A 90 KLLVSNL-DFGVSDADIQELFAE-FGT-LKKAAVDYDR-----SGRSLGTADVHFERRADALK 144 (177)
T ss_dssp EEEEECC-CSCCCHHHHHHHHHH-TSC-CSEEEECCCT-----TSSCSCCEEEEESCHHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHHh-cCC-eEEEEEEECC-----CCCEeeEEEEEeCCHHHHHH
Confidence 3334443 356789999998865 554 2333333322 4566777766 677776653
No 118
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=33.28 E-value=45 Score=20.19 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. +.-|.=+.....++.+.|||.| |.|.+.+.+
T Consensus 14 ~~~t~~~l~~~F~~-~G~----i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~ 62 (88)
T 4a8x_A 14 RNVTKDHIMEIFST-YGK----IKMIDMPVERMHPHLSKGYAYVEFENPDEAEK 62 (88)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEECCEETTEEEEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC----EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHH
Confidence 45688899988854 553 1222222233334457888876 777776653
No 119
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=33.21 E-value=57 Score=21.13 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
+-|... ....+.+||++.+. .||. =.++. |...-..+.+.|||.| |.|.+.+.
T Consensus 43 l~V~nl-p~~~t~~~l~~~F~-~~G~-i~~~~----i~~~~~~g~~~g~afV~f~~~~~A~ 96 (118)
T 2khc_A 43 LFIYHL-PQEFTDTDLASTFL-PFGN-VISAK----VFIDKQTSLSKCFGFVSFDNPDSAQ 96 (118)
T ss_dssp EEEECS-CTTCCHHHHHHHTT-TSCE-EEEEE----ECCCSSSSCCCCEEEEEEESSHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHH-hcCC-EEEEE----EEeCCCCCCcCcEEEEEECCHHHHH
Confidence 334443 34567888888774 4553 11222 2222234566777766 56655554
No 120
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=33.09 E-value=52 Score=24.68 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.++|.++| .++...-..|++.+++ +++.++++|
T Consensus 207 ~lei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~~G 239 (288)
T 1nrw_A 207 NFELSSRK---ASKGQALKRLAKQLNI-PLEETAAVG 239 (288)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred cEEEecCC---CChHHHHHHHHHHhCC-CHHHEEEEc
Confidence 35666654 6788889999999999 776666654
No 121
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=32.57 E-value=94 Score=19.55 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=23.4
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032760 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60 (134)
Q Consensus 22 kEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~ 60 (134)
+.+.++|. ++-+-.+|+++|++..+++..+.-+++
T Consensus 15 ~~~~~~v~----~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 15 RSSTYEVR----LTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp CEEEEEEE----SSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CEEEEEEC----CCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 34555553 345679999999999999444444443
No 122
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=32.57 E-value=54 Score=24.35 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
++|.++| .++...-..|++.+++ +++.++++|
T Consensus 182 ~ei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~~G 213 (268)
T 1nf2_A 182 LEIVPKN---VDKGKALRFLRERMNW-KKEEIVVFG 213 (268)
T ss_dssp EEEECTT---CCHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EEEeCCC---CChHHHHHHHHHHcCC-CHHHeEEEc
Confidence 5666654 6888999999999999 777666664
No 123
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.50 E-value=69 Score=19.65 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+. .|+. =.++. +...-..+.+.|||.| |.|.+.+.+
T Consensus 26 ~~~t~~~l~~~f~-~~G~-v~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~ 73 (94)
T 2e5h_A 26 FSLTNNDLYRIFS-KYGK-VVKVT----IMKDKDTRKSKGVAFILFLDKDSAQN 73 (94)
T ss_dssp TTSCHHHHHHHTT-TTSC-EEEEE----ECCCSSSCCCTTCEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEE----EEeCCCCCCcccEEEEEECCHHHHHH
Confidence 4577888887774 3443 12222 2222233556667765 777776654
No 124
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=32.16 E-value=1.5e+02 Score=21.92 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=41.4
Q ss_pred Cccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE---eCCHHHHHh
Q 032760 18 LLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI---YDSVDSAKK 86 (134)
Q Consensus 18 LL~R-kEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I---Yds~e~~kk 86 (134)
|+.. .+++|.|.-. -++.||++.+-++|++ ++.=|..+... .|.=.+|+.. ||.+|.+.+
T Consensus 85 ~~E~~N~~vF~Vd~~----AnK~qIK~AVEklf~V---kV~kVNTl~~~--~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 85 KIEDNNTLVFIVDLK----ADKKKIKAAVKKMYDI---QAKKVNTLIRP--DGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp HHHHHSEEEEEECSS----CCSHHHHHHHHHHHTC---CEEEEEEEECT--TSSEEEEEEECTTSCHHHHHGG
T ss_pred HHHhCCEEEEEEcCC----CCHHHHHHHHHHHhCC---cceEEEeeEcC--CCceEEEEEcCCCCcHHHHHHh
Confidence 4443 5788877543 6799999999999999 56666666654 4556667766 555665544
No 125
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.12 E-value=89 Score=20.65 Aligned_cols=20 Identities=25% Similarity=0.129 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHhHc--CCCCCCe
Q 032760 36 VSKAELKEKLARMY--DVKDPNS 56 (134)
Q Consensus 36 psr~eI~~kLA~~~--~~~~~~~ 56 (134)
-+-.+|+++|+... ++ .++.
T Consensus 45 ~TV~~LK~~i~~~~~~gi-p~~~ 66 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESV-PDPE 66 (107)
T ss_dssp CBHHHHHHHHHHHCTTTC-CCSS
T ss_pred CCHHHHHHHHHHHhccCC-Chhh
Confidence 56899999999999 99 5554
No 126
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=31.93 E-value=22 Score=21.75 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=23.8
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 37 SKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 37 sr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
+.++|++.++ .||. ...|.+. . ..|.+.|||.| |+|.+.|..
T Consensus 20 t~~~l~~~F~-~~G~--i~~v~i~---~--~~g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 20 LKNVIHKIFS-KFGK--ITNDFYP---E--EDGKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp HHHHHHHHHH-TTCC--EEEEECC---C--BTTBCCCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHh-hcCC--eEEEEec---C--CCCcEeEEEEEEECCHHHHHH
Confidence 4567777664 4554 1222222 2 34577888877 777776653
No 127
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=31.69 E-value=1.5e+02 Score=21.69 Aligned_cols=60 Identities=20% Similarity=0.381 Sum_probs=41.0
Q ss_pred Cccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE---eCCHHHHHh
Q 032760 18 LLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI---YDSVDSAKK 86 (134)
Q Consensus 18 LL~R-kEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I---Yds~e~~kk 86 (134)
|+.. .+++|.|.-. -++.||++.+-++|++ ++.=|..+... +|.=.+|+.. ||.+|.+.+
T Consensus 75 ~~E~~N~~vF~Vd~~----AnK~qIK~AVEklf~V---kV~kVNTl~~~--~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 75 KVEDGNILVFQVSMK----ANKYQIKKAVKELYEV---DVLKVNTLVRP--NGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp HHHHHCEEEEEECTT----CCHHHHHHHHHHHHSC---CEEEEEEEECT--TSCEEEEEEECTTCCHHHHHHH
T ss_pred HHHhCCEEEEEEcCC----CCHHHHHHHHHHHhCC---ceeEEEeeEcC--CCceEEEEEeCCCCcHHHHHHh
Confidence 4443 5788887543 5699999999999999 56666666554 3566677776 555555544
No 128
>2okr_C MAP kinase-activated protein kinase 2; NLS, NES, heterodimer, docking groove, transferase; 2.00A {Homo sapiens}
Probab=31.57 E-value=2.2 Score=23.27 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=10.6
Q ss_pred EEeeeeeeccCccce
Q 032760 8 IRTRKFMTNRLLSRK 22 (134)
Q Consensus 8 i~~~k~~~NpLL~Rk 22 (134)
|+....-+||||++|
T Consensus 3 iK~L~~snNpLL~kR 17 (26)
T 2okr_C 3 IKKIEDASNPLLLKR 17 (26)
T ss_dssp CCCTTTCCCHHHHHH
T ss_pred ccccccccCHHHHHH
Confidence 444566789999865
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=31.37 E-value=73 Score=19.96 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++.++. ||. =.++-++ .+.|||.| |+|.+.+.
T Consensus 37 ~~~~~~~l~~~f~~-~G~-i~~~~~~----------~~~g~afV~f~~~~~A~ 77 (101)
T 2la4_A 37 HFATEADLIPLFQN-FGF-ILDFKHY----------PEKGCCFIKYDTHEQAA 77 (101)
T ss_dssp TTCCHHHHHHHHHT-TSC-CSEEEEE----------TTTTEEEEECSSHHHHH
T ss_pred cccCHHHHHHHHHh-CCC-EEEEEEe----------cCCCEEEEEECCHHHHH
Confidence 46778888888754 554 2233332 24567766 66776554
No 130
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=31.21 E-value=58 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 36 VSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.|+...-..|++.||+ +++.++++|
T Consensus 196 ~~K~~~l~~l~~~lgi-~~~~~i~~G 220 (279)
T 3mpo_A 196 ASKGGTLSELVDQLGL-TADDVMTLG 220 (279)
T ss_dssp CCHHHHHHHHHHHTTC-CGGGEEEC-
T ss_pred CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 6799999999999999 887777764
No 131
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.19 E-value=63 Score=20.96 Aligned_cols=45 Identities=16% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++.+ -| .+.|||.| |++.+.+.+
T Consensus 39 ~~~te~~l~~~F~-~~G~-i~~v~i~~~----~~--~~kg~afV~f~~~~~A~~ 84 (109)
T 2err_A 39 FRFRDPDLRQMFG-QFGK-ILDVEIIFN----ER--GSKGFGFVTFENSADADR 84 (109)
T ss_dssp TTCCHHHHHHHGG-GTCC-CSCEEECCB----TT--BCTTEEEEECCCSHHHHH
T ss_pred CcCCHHHHHHHHH-hcCC-EEEEEEEEC----CC--CCceEEEEEECCHHHHHH
Confidence 4678889988885 5554 244444433 12 36677766 666555543
No 132
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=30.97 E-value=1e+02 Score=19.47 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++. .--.+.+.|||.| |.|.+.+.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~v~i~~----~~~~g~~~g~afV~f~~~~~A~~ 72 (111)
T 1x4h_A 25 FDSEEEALGEVLQQ-FGD-LKYVRVVL----HPDTEHSKGCAFAQFMTQEAAQK 72 (111)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEECCB----CSSSCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEe----cCCCCCCccEEEEEECCHHHHHH
Confidence 45788899988854 453 12222222 2224566777766 667666543
No 133
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=30.78 E-value=61 Score=23.73 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 36 VSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.|+.+.-..|++.||+ +++.++++|
T Consensus 196 ~~K~~~l~~l~~~lgi-~~~~~i~~G 220 (279)
T 4dw8_A 196 IDKALSLSVLLENIGM-TREEVIAIG 220 (279)
T ss_dssp CCHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 6889999999999999 777776664
No 134
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=30.67 E-value=41 Score=25.39 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVF 60 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~ 60 (134)
+.+.-.++++.||+.+++ +++.|++.
T Consensus 59 ~~~~~~~l~~~la~~~~~-~~~~i~~~ 84 (361)
T 3ftb_A 59 PDVNYRRLNKSIENYLKL-KDIGIVLG 84 (361)
T ss_dssp CCTTCHHHHHHHHHHHTC-CSCEEEEE
T ss_pred CCccHHHHHHHHHHHhCC-CcceEEEc
Confidence 445568999999999999 88877764
No 135
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=30.44 E-value=32 Score=26.11 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 36 VSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
|.-.++++.||+.+++ +++.|++.+
T Consensus 50 ~~~~~lr~~la~~~~~-~~~~i~~t~ 74 (350)
T 3fkd_A 50 PDAGTLRQMLAKRNSV-DNNAILVTN 74 (350)
T ss_dssp TTCHHHHHHHHHHTTC-CGGGEEEES
T ss_pred CcHHHHHHHHHHHhCc-CHHHEEEcC
Confidence 4447999999999999 877777643
No 136
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=30.37 E-value=28 Score=26.03 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVF 60 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~ 60 (134)
+.|.-.++++.||+.+++ +++.|++.
T Consensus 49 ~~~~~~~lr~~la~~~~~-~~~~i~~t 74 (337)
T 3p1t_A 49 PFDAEPRVMRKLAEHFSC-PEDNLMLV 74 (337)
T ss_dssp CTTHHHHHHHHHHHHHTS-CGGGEEEE
T ss_pred CCCchHHHHHHHHHHhCc-CHHHEEEe
Confidence 456678999999999999 77666654
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=29.64 E-value=1.1e+02 Score=19.52 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 36 VSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
.+.+||++.++ .||. ...|.+ +.|||.| |++.+.+.
T Consensus 40 ~t~~~l~~~F~-~~G~--v~~v~i-----------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 40 VKKSDVETIFS-KYGR--VAGCSV-----------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCHHHHHHHHG-GGSC--CSEEEE-----------ETTEEEEECSSSHHHH
T ss_pred CCHHHHHHHHH-hCCC--eEEEEE-----------eCCEEEEEECCHHHHH
Confidence 77889998885 4564 234444 4567766 55555543
No 138
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=29.56 E-value=65 Score=24.02 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
++|.++| .|+...-+.|++.||+ +++.++.+|
T Consensus 201 ~ei~~~~---~~K~~al~~l~~~lgi-~~~~~ia~G 232 (285)
T 3pgv_A 201 LEVMAGG---VSKGHALEAVAKMLGY-TLSDCIAFG 232 (285)
T ss_dssp EEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEecCC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 4455443 6788888999999999 777776654
No 139
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=29.50 E-value=1e+02 Score=18.91 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++. ... +.+.|||.| |.+.+.+.+
T Consensus 26 ~~~~~~~l~~~F~~-~G~-i~~v~i~~----~~~-g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ywk_A 26 ARVREEILYELFLQ-AGP-LTKVTICK----DRE-GKPKSFGFVCFKHPESVSY 72 (95)
T ss_dssp TTCCHHHHHHHHGG-GSC-EEEEEEEE----CTT-SCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEE----CCC-CCCceEEEEEECCHHHHHH
Confidence 45778899888854 554 12322222 222 678888877 666666644
No 140
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=29.44 E-value=66 Score=23.99 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 36 VSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.++...-..|++.||+ +++.++.+|
T Consensus 210 ~~K~~~l~~l~~~lgi-~~~e~ia~G 234 (283)
T 3dao_A 210 VSKWTALSYLIDRFDL-LPDEVCCFG 234 (283)
T ss_dssp CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred CcHHHHHHHHHHHhCC-CHHHEEEEC
Confidence 6899999999999999 777777654
No 141
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=29.43 E-value=64 Score=23.90 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 36 VSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.++.+.-..|++.+++ +++.++++|
T Consensus 190 ~~K~~~~~~l~~~l~i-~~~~~~~~G 214 (271)
T 1rlm_A 190 LHKANGISRLLKRWDL-SPQNVVAIG 214 (271)
T ss_dssp CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 5788899999999999 776666554
No 142
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=29.42 E-value=1.8e+02 Score=21.71 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=31.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCC-CCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH-hcC
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVK-DPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK-KFE 88 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~-~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k-k~E 88 (134)
|-|-.. ....+..+|++.+ ..|++. =.++.|+ +.--.+.+.|||.| |++.+.+. .++
T Consensus 71 lfVgnL-~~~~te~~L~~~F-~~~G~~~v~~v~i~----~d~~tg~skGfaFV~f~~~~~a~~Ai~ 130 (229)
T 3q2s_C 71 LYIGNL-TWWTTDEDLTEAV-HSLGVNDILEIKFF----ENRANGQSKGFALVGVGSEASSKKLMD 130 (229)
T ss_dssp EEEESC-CTTCCHHHHHHHH-HTTTCCCEEEEEEE----ECTTTCCEEEEEEEEESCTTHHHHHHT
T ss_pred EEEeCC-CCCCCHHHHHHHH-HHHCCcceEEEEEE----ecCCCCccceEEEEEECCHHHHHHHHH
Confidence 344443 3567888999888 456630 1222233 22235677888877 66654443 344
No 143
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=29.26 E-value=97 Score=18.66 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++ ..-..+.+.|||.| |.|.+.+.+
T Consensus 16 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 63 (89)
T 3ucg_A 16 YGATAEELEAHFH-GCGS-VNRVTIL----CDKFSGHPKGFAYIEFSDKESVRT 63 (89)
T ss_dssp TTCCHHHHHHHHG-GGCC-EEEEEEE----ESCSSSSCCEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EEEEEEE----ecCCCCCcceEEEEEECCHHHHHH
Confidence 4568899998885 4554 1233333 22234566677665 666665543
No 144
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.93 E-value=40 Score=20.75 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhc
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++.++ .||. =.++.++.. +.|||.| |+|.+.|.+.
T Consensus 15 ~~~te~~l~~~F~-~~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 15 GDMTEDELREFFS-QYGD-VMDVFIPKP---------FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SSSCHHHHHHHST-TTSC-CCEEECCSS---------CCSCCEEECSCHHHHHHT
T ss_pred CCCCHHHHHHHHH-HcCC-eeEEEEecC---------CCCEEEEEECCHHHHHHH
Confidence 5677888888774 4554 233333322 6788877 8899988653
No 145
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.75 E-value=21 Score=23.16 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCC-eEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPN-SIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~-~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
+-|-.. ....+.+||++.+. .++. -.+ +.++.+ -.|.+.|||.| |++.+.+.+
T Consensus 18 l~V~nL-p~~~te~~l~~~F~-~~G~-v~~~v~i~~~-----~~g~~~G~afV~F~~~~~a~~ 72 (104)
T 1wg5_A 18 VRLRGL-PFGCSKEEIVQFFS-GLEI-VPNGMTLPVD-----FQGRSTGEAFVQFASQEIAEK 72 (104)
T ss_dssp EEEESC-CTTCCHHHHHHHTT-TCCE-EEEEEECCBC-----SSSCBCSEEEEEESSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHH-hcCC-cceeEEEEEC-----CCCCcceEEEEEECCHHHHHH
Confidence 334443 35667888887774 3443 122 222222 24567788876 666665543
No 146
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=28.40 E-value=1.2e+02 Score=19.55 Aligned_cols=47 Identities=23% Similarity=0.435 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. |.-..+...-..|.+.|||.| |.|.+.+..
T Consensus 36 ~~~te~~l~~~F~-~~G~-----i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 83 (108)
T 2jrs_A 36 FNITEDMLRGIFE-PFGR-----IESIQLMMDSETGRSKGYGFITFSDSECAKK 83 (108)
T ss_dssp SSCCHHHHHHHHT-TTSC-----EEEEEEEEETTTTEEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-----eEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 4578889988884 4553 222223333456788999987 788887764
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.86 E-value=28 Score=22.00 Aligned_cols=40 Identities=10% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 35 NVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
..+.++|++.+ ..||. ...|.| +.+.|||.| |++.+.+.+
T Consensus 24 ~~t~~~l~~~F-~~~G~--i~~v~i---------~~~~g~afV~f~~~~~a~~ 64 (97)
T 1x5p_A 24 DMTPTLLRGAF-SPFGN--IIDLSM---------DPPRNCAFVTYEKMESADQ 64 (97)
T ss_dssp SCCHHHHHHHH-TTTSC--EEEEEE---------ETTTTEEEEEESSHHHHHH
T ss_pred CCCHHHHHHHH-hhCCC--EEEEEe---------cCCCCEEEEEECCHHHHHH
Confidence 67888998877 44554 122332 134556665 666665544
No 148
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=27.51 E-value=44 Score=22.52 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 35 NVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
..+.++|++.+ ..||. =.++.++ .+.|||.| |++.+.+..
T Consensus 48 ~~te~~L~~~F-~~~G~-I~~v~i~----------~~kg~aFV~f~~~~~A~~ 88 (121)
T 2bz2_A 48 DMTPTLLRGAF-SPFGN-IIDLSMD----------PPRNCAFVTYEKMESADQ 88 (121)
T ss_dssp SCCHHHHHHHH-STTCC-CSCEEEE----------TTTTEEEEECSSHHHHHH
T ss_pred CCCHHHHHHHH-HccCC-EEEEEEe----------CCCCEEEEEECCHHHHHH
Confidence 57788888877 45554 2343332 34566766 777765543
No 149
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=27.25 E-value=54 Score=19.06 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=18.9
Q ss_pred EEEEcCCCCCCC-H----HHHHHHHHhHcCCCCCCeEEE
Q 032760 26 IDVLHPGRANVS-K----AELKEKLARMYDVKDPNSIFV 59 (134)
Q Consensus 26 ~~v~H~g~~Tps-r----~eI~~kLA~~~~~~~~~~ivV 59 (134)
+.|...++-|+. + .+|-+.|++.+|. +++.|+|
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~-~~~~v~V 41 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGE-PYEEVRV 41 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTC-CGGGEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCC-CcccEEE
Confidence 344444344554 2 2456677788899 6665544
No 150
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*
Probab=27.07 E-value=77 Score=23.29 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.++|.++| .++...-..|++.+++ +++.++.+|
T Consensus 153 ~lei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~~G 185 (244)
T 1s2o_A 153 DVDLLPQR---SNKGNATQYLQQHLAM-EPSQTLVCG 185 (244)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred eEEeccCC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 35666664 6788899999999999 777666665
No 151
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.03 E-value=79 Score=18.98 Aligned_cols=41 Identities=10% Similarity=0.238 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++. +.|||.| |+|.+.+..
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~~~~~~----------~kg~afV~f~~~~~A~~ 63 (85)
T 2ytc_A 22 DTITETDLRNHFYQ-FGE-IRTITVVQ----------RQQCAFIQFATRQAAEV 63 (85)
T ss_dssp TTSCHHHHHHHHHT-TSC-EEEEEEEG----------GGTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC-EeEEEEEC----------CCCEEEEEECCHHHHHH
Confidence 56788999988854 554 12333332 2466766 677776644
No 152
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=27.03 E-value=54 Score=21.14 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+..+|++.++ .||. =.++.++.+ |.+ .|||.| |.|.+.|.
T Consensus 18 ~~~t~~~l~~~F~-~~G~-v~~v~i~~~-----~~~--~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 18 YKITAEEMYDIFG-KYGP-IRQIRVGNT-----PET--RGTAYVVYEDIFDAK 61 (115)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEECS-----TTT--TTCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEeeC-----CCC--CcEEEEEECCHHHHH
Confidence 5678899998885 4554 233333321 333 555554 56665543
No 153
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=26.89 E-value=38 Score=25.85 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVF 60 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~ 60 (134)
+.|.-.++++.||+.+++ +++.|++.
T Consensus 63 ~~~~~~~lr~~la~~~g~-~~~~i~~t 88 (360)
T 3hdo_A 63 PSASSQKLREVAGELYGF-DPSWIIMA 88 (360)
T ss_dssp CCSSCHHHHHHHHHHHTC-CGGGEEEE
T ss_pred CCCchHHHHHHHHHHhCc-CcceEEEc
Confidence 344558999999999998 77777764
No 154
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=26.62 E-value=40 Score=23.26 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEEeCCHHHHHhcCCchhhhhcCCccc
Q 032760 36 VSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTK 101 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~IYds~e~~kk~Epk~~l~Rn~~~e~ 101 (134)
-++.++-..+++.+++...++++|.+=.+-.-+....|..-++.+.+.++ -.+.|++.-|.+.+-
T Consensus 141 k~k~~~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~~~~~~l~-~~ad~v~~~~dl~~~ 205 (217)
T 3m1y_A 141 HSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLK-QHATHCINEPDLALI 205 (217)
T ss_dssp THHHHHHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEESCCHHHH-TTCSEEECSSBGGGG
T ss_pred CChHHHHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEECccHHHH-HhcceeecccCHHHH
Confidence 34568888888999994445555554333333333444455556666665 458888887776553
No 155
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=26.55 E-value=38 Score=26.09 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032760 35 NVSKAELKEKLARMYDVKDPNSIFVF 60 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~ivV~ 60 (134)
.|.-.++++.||+.+++ +++.|++.
T Consensus 57 ~~~~~~lr~~la~~~~~-~~~~v~~~ 81 (356)
T 1fg7_A 57 ECQPKAVIENYAQYAGV-KPEQVLVS 81 (356)
T ss_dssp CSSCHHHHHHHHHHHTS-CGGGEEEE
T ss_pred CccHHHHHHHHHHHhCC-ChHHEEEc
Confidence 34468999999999999 87776654
No 156
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=26.45 E-value=48 Score=24.72 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=26.7
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 28 VLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
..-| +=.|-+.++++.||+.+++ +++.|-|.-
T Consensus 100 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKA 131 (152)
T 1iv3_A 100 LDRP-KLGPHRKALVDSLSRLMRL-PQDRIGLTF 131 (152)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred ecCC-cCHHHHHHHHHHHHHHhCC-CCceEEEEE
Confidence 3344 5689999999999999999 999988864
No 157
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=26.44 E-value=1.4e+02 Score=19.60 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=31.2
Q ss_pred cceEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032760 4 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVF 60 (134)
Q Consensus 4 ~~v~i~~~k~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~ 60 (134)
+.|+|.+.. +.+..+.+.++|. ++-+-.+|+++|....|++....-+++
T Consensus 14 ~~v~l~It~----s~~~~~~~~~~v~----~~~TV~~LK~kI~~~~GiP~~~QrL~~ 62 (95)
T 2kjr_A 14 DFIKVNVSN----SHNDAVAFEVKLA----KDLTVAQLKTKLEILTGGCAGTMKVQV 62 (95)
T ss_dssp CEEEEEEEE----SSCSCEEEEEEEE----TTCBHHHHHHHHHHHHCSCTTTEEEEE
T ss_pred CeEEEEEEE----CCCCceEEEEEeC----ccCHHHHHHHHHHHHHCcCHHHeEEEE
Confidence 357777654 4444444444443 556789999999999999444444443
No 158
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=26.42 E-value=1.1e+02 Score=20.60 Aligned_cols=40 Identities=18% Similarity=0.414 Sum_probs=28.9
Q ss_pred eeeeccCccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCe
Q 032760 12 KFMTNRLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNS 56 (134)
Q Consensus 12 k~~~NpLL~R-kEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ 56 (134)
.+....|+.. .+++|.|.- ..++.||++++-++|++ +..-
T Consensus 17 TEKa~~~~e~~n~~~F~V~~----~AnK~eIK~AVE~lf~V-kV~~ 57 (93)
T 3r8s_T 17 SEKASTAMEKSNTIVLKVAK----DATKAEIKAAVQKLFEV-EVEV 57 (93)
T ss_dssp SHHHHHHHHTTSEEEEEECS----SCCHHHHHHHHHHHSCC-CCCE
T ss_pred CHHHHHHHHhCCEEEEEECC----CCCHHHHHHHHHHHcCC-ceEE
Confidence 3334455555 688888754 36799999999999999 5443
No 159
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.39 E-value=1.1e+02 Score=19.44 Aligned_cols=41 Identities=7% Similarity=0.274 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++.+ .|||.| |+|.+.+..
T Consensus 35 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~----------~g~afV~f~~~~~a~~ 76 (109)
T 1x4g_A 35 SGLTDQLMRQTFSP-FGQ-IMEIRVFPE----------KGYSFVRFSTHESAAH 76 (109)
T ss_dssp SCCCHHHHHHHHHH-HSC-EEEEEEETT----------TTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEeCC----------CCEEEEEECCHHHHHH
Confidence 46788999988864 564 233333332 456665 777776543
No 160
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=26.38 E-value=57 Score=23.92 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=22.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 27 DVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
+|.++| .++.+.-..|++.+++ +++.++++|
T Consensus 180 ei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~iG 210 (261)
T 2rbk_A 180 DVTAKG---DTKQKGIDEIIRHFGI-KLEETMSFG 210 (261)
T ss_dssp EEESTT---CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EecCCC---CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 445543 5788888999999999 776666654
No 161
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=26.02 E-value=26 Score=20.72 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeEE
Q 032760 32 GRANVSKAELKEKLARMYDVKDPNSIF 58 (134)
Q Consensus 32 g~~Tpsr~eI~~kLA~~~~~~~~~~iv 58 (134)
|...|+.. .-.+||..|++ +++.++
T Consensus 46 g~~~~~~~-~l~~ia~~l~~-~~~~l~ 70 (76)
T 3bs3_A 46 NKSQPSLD-MLVKVAELLNV-DPRQLI 70 (76)
T ss_dssp TSSCCCHH-HHHHHHHHHTS-CGGGGB
T ss_pred CCCCCCHH-HHHHHHHHHCc-CHHHHh
Confidence 45556654 45789999999 777655
No 162
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=26.01 E-value=51 Score=24.74 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=27.4
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceE
Q 032760 28 VLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFR 63 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~ 63 (134)
..-| +=.|-+.++++.||+.+++ +++.|-|.-=-
T Consensus 102 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKAtT 135 (159)
T 1t0a_A 102 AQAP-KMAPHIEDMRQVLAADLNA-DVADINVKATT 135 (159)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHTTC-CGGGEEEEEEC
T ss_pred cCCC-cChHHHHHHHHHHHHHhCC-CCceEEEEEec
Confidence 3344 5689999999999999999 99998886433
No 163
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=25.84 E-value=52 Score=24.74 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=27.5
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceE
Q 032760 28 VLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFR 63 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~ 63 (134)
..-| +=.|-+.++++.||+.+++ +++.|-|.-=-
T Consensus 101 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKAtT 134 (160)
T 1gx1_A 101 AQAP-KMLPHIPQMRVFIAEDLGC-HMDDVNVKATT 134 (160)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHTTC-CGGGEEEEEEC
T ss_pred cCCC-cchHHHHHHHHHHHHHhCC-CCceEEEEEcc
Confidence 3344 5689999999999999999 99999886433
No 164
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=25.72 E-value=1.2e+02 Score=20.99 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=32.3
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEe
Q 032760 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64 (134)
Q Consensus 22 kEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T 64 (134)
|-+++||+-| --||--|+-..||+.-|+ +.=+|-|..+.-
T Consensus 7 rRlVLDVlKP--h~p~i~d~A~~l~~~~gV-~gVnItv~EvD~ 46 (97)
T 2raq_A 7 IRIVLDILKP--HEPIIPEYAKYLSELRGV-EGVNITLMEIDK 46 (97)
T ss_dssp EEEEEEEECC--SCSCHHHHHHHHHHSTTC-CEEEEEEEEECS
T ss_pred eEEEEEecCC--CCCCHHHHHHHHHhCCCc-ceEEEEEEEeec
Confidence 4489999987 669999999999999999 766666665543
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=25.54 E-value=46 Score=22.36 Aligned_cols=47 Identities=26% Similarity=0.545 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++.+- ..|.+.|||.| |+|.+.+.+
T Consensus 97 ~~~t~~~l~~~F~~-~G~-i~~~~i~~~~----~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 97 PDVRPKEFEEFFSQ-WGT-IIDAQLMLDK----DTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp TTCCHHHHHHHHHT-TSC-CSEEECCCSS----SSSTTSEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-Ccc-EEEEEEEEcC----CCCccceEEEEEECCHHHHHH
Confidence 46778899988864 554 2333333321 23556666655 677776654
No 166
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=25.49 E-value=1.3e+02 Score=19.04 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=14.1
Q ss_pred CCCEEEEEEEE-eCCHHHHHh
Q 032760 67 GGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 67 G~g~s~g~a~I-Yds~e~~kk 86 (134)
..|.+.|||.| |.+.+.+.+
T Consensus 49 ~tg~~kG~afV~f~~~~~A~~ 69 (100)
T 3ns6_A 49 ATGKTKGFLFVECGSMNDAKK 69 (100)
T ss_dssp TTTEECSEEEEEESSHHHHHH
T ss_pred CCCccceEEEEEECCHHHHHH
Confidence 44788899887 777666543
No 167
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=25.43 E-value=81 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=24.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
++|.++| .++...-..|++.+++ +++.++++|
T Consensus 190 lei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~~G 221 (282)
T 1rkq_A 190 LEILDKR---VNKGTGVKSLADVLGI-KPEEIMAIG 221 (282)
T ss_dssp EEEEETT---CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EEecCCC---CCCHHHHHHHHHHhCC-CHHHEEEEC
Confidence 5666654 6788899999999999 776666654
No 168
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=25.32 E-value=1.1e+02 Score=19.45 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=22.5
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 37 SKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 37 sr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
+..+|++.++ .||. =.+ |.|. . ..|.+.|||.| |.|.+.+.
T Consensus 34 t~~~l~~~F~-~~G~-v~~-v~i~---~--~~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 34 LKNVIHKIFS-KFGK-ITN-DFYP---E--EDGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp HHHHHHHHHG-GGSC-EEE-EECC---C--BTTBSCCEEEEEECSSSHHH
T ss_pred HHHHHHHHHh-cCCC-EEE-EEee---C--CCCCeeeEEEEEECCHHHHH
Confidence 4567777774 4554 122 2222 1 34577788876 66665443
No 169
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=25.29 E-value=91 Score=22.78 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.++|.++| .++.+.-..|++.++. +++.++.+|
T Consensus 144 ~~ei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~iG 176 (227)
T 1l6r_A 144 SWHLMNRG---EDKAFAVNKLKEMYSL-EYDEILVIG 176 (227)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEC
T ss_pred EEEEecCC---CCHHHHHHHHHHHhCc-CHHHEEEEC
Confidence 35666654 6888889999999999 776666654
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=25.21 E-value=1.7e+02 Score=20.25 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.+. .||. =.++.++ ..--.|.+.|||.| |+|.+.+.+
T Consensus 135 ~~~t~~~l~~~f~-~~G~-v~~v~i~----~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 135 QDLSDDDIKSVFE-AFGK-IKSATLA----RDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp TTCCHHHHHHHHT-TSSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHh-ccCC-eeEEEEE----ecCCCCCcCceEEEEecCHHHHHH
Confidence 4567888888774 4553 1233332 22235677888776 677766543
No 171
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=25.10 E-value=1.1e+02 Score=18.06 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++. +......+.+.|||.| |.|.+.+..
T Consensus 11 ~~~t~~~l~~~f~-~~G~-i~~~~----i~~~~~~~~~~g~afV~f~~~~~a~~ 58 (83)
T 3md1_A 11 VNVDDETLRNAFK-DFPS-YLSGH----VMWDMQTGSSRGYGFVSFTSQDDAQN 58 (83)
T ss_dssp TTCCHHHHHHHHT-TSTT-EEEEE----EEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eeEEE----EEEcCCCCCccceEEEEECCHHHHHH
Confidence 4567888888774 4554 12222 2333345778888876 777776654
No 172
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=24.99 E-value=53 Score=21.59 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=25.4
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
.|-|-.. ....+.+||++.+. .++. =.++.++.+ |||.| |++.+.|.
T Consensus 18 ~l~V~nL-p~~~t~~~l~~~F~-~~G~-v~~~~i~~~-----------g~afV~f~~~~~a~ 65 (115)
T 3beg_B 18 RVVVSGL-PPSGSWQDLKDHMR-EAGD-VCYADVYRD-----------GTGVVEFVRKEDMT 65 (115)
T ss_dssp CEEEEEC-CSSCCTTHHHHHHG-GGSC-EEEEEECTT-----------SEEEEEESSHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHH-hcCC-eEEEEEecC-----------CEEEEEECCHHHHH
Confidence 3344443 25667889988775 4553 123333222 67765 66666554
No 173
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=24.56 E-value=54 Score=24.63 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=26.6
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 28 VLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
..-| +=.|-+.++++.||+.+++ +++.|-|.-
T Consensus 103 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKA 134 (160)
T 2pmp_A 103 LQRP-KISPHKETIRSNLSKLLGA-DPSVVNLKA 134 (160)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred ecCC-cCHHHHHHHHHHHHHHHCC-CcceEEEEE
Confidence 3345 5679999999999999999 999988764
No 174
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=24.39 E-value=27 Score=20.49 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=16.8
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeE
Q 032760 32 GRANVSKAELKEKLARMYDVKDPNSI 57 (134)
Q Consensus 32 g~~Tpsr~eI~~kLA~~~~~~~~~~i 57 (134)
|...|+... -.+||..|++ +++.+
T Consensus 49 g~~~~~~~~-l~~l~~~l~~-~~~~l 72 (74)
T 1y7y_A 49 GQRNVSLVN-ILKLATALDI-EPREL 72 (74)
T ss_dssp TCSCCBHHH-HHHHHHHTTS-CGGGG
T ss_pred CCCCCCHHH-HHHHHHHhCc-CHHHH
Confidence 455666554 5689999999 77654
No 175
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=24.10 E-value=1.6e+02 Score=19.56 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++.++ .||. =.++.+ ...-..|.+.|||.| |+|.+.+.
T Consensus 104 ~~~t~~~l~~~f~-~~G~-v~~v~i----~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 104 NYLNDDQVKELLT-SFGP-LKAFNL----VKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEE----EECTTTCSEEEEEEEEESSTTHHH
T ss_pred CcCCHHHHHHHHH-hcCC-ceEEEE----EecCCCCCcceEEEEEeCCHHHHH
Confidence 3567889998886 4554 122222 222235667788776 66666554
No 176
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.06 E-value=1.4e+02 Score=21.22 Aligned_cols=26 Identities=8% Similarity=0.264 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeE-EEe
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSI-FVF 60 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~i-vV~ 60 (134)
+.-+-.|+++.||..+++ +++.+ ++|
T Consensus 35 ~d~TV~dLKe~ls~~~~i-P~e~qrLIy 61 (118)
T 2daf_A 35 VDTILKYLKDHFSHLLGI-PHSVLQIRY 61 (118)
T ss_dssp SSSCSHHHHHHHHHHHTC-CTTTEEEEE
T ss_pred CCCcHHHHHHHHHhhhCC-ChHHEEEEE
Confidence 556789999999999999 55544 444
No 177
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=23.88 E-value=56 Score=24.62 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=27.1
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceE
Q 032760 28 VLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFR 63 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~ 63 (134)
...| +=.|-+.++++.||+.+++ +++.|-|.-=-
T Consensus 106 ~q~P-Kl~p~~~~m~~~la~~L~~-~~~~V~vKAtT 139 (162)
T 3re3_A 106 AQAP-KMLPHIEKMRACLANILEI-QISQINIKATT 139 (162)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHHTS-CGGGEEEEEEC
T ss_pred cCCC-cchhHHHHHHHHHHHHHCC-CCceEEEEEec
Confidence 3344 5678899999999999999 88998886433
No 178
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.86 E-value=1.4e+02 Score=18.70 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCC-CCEEEEEEEE-eCCHHHHHhc
Q 032760 25 VIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFG-GGKSTGFGLI-YDSVDSAKKF 87 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG-~g~s~g~a~I-Yds~e~~kk~ 87 (134)
.+-|-.. ....+.+||++.++. |++ .++. |..... .+.+.|||.| |.|.+.+.+.
T Consensus 17 ~l~V~nl-p~~~t~~~l~~~F~~-~Gi--~~v~----i~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 17 TAFLGNL-PYDVTEESIKEFFRG-LNI--SAVR----LPREPSNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp EEEEESC-CSSCCHHHHHHHTTT-SCE--EEEE----CCBCSSCTTSBCSCEEEEESSHHHHHHH
T ss_pred EEEEeCC-CCcCCHHHHHHHHHH-CCc--eEEE----EecCCCCCCCcCeEEEEEECCHHHHHHH
Confidence 3444443 356788888877743 343 1222 222222 2677788877 7777777553
No 179
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=23.75 E-value=94 Score=23.40 Aligned_cols=25 Identities=12% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 36 VSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.++...-..|++.+|+ +++.++++|
T Consensus 227 ~~K~~al~~l~~~lgi-~~~e~i~~G 251 (304)
T 3l7y_A 227 LHKGWALQQLLKRWNF-TSDHLMAFG 251 (304)
T ss_dssp CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred CCHHHHHHHHHHHhCc-CHHHEEEEC
Confidence 5788889999999999 777776664
No 180
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=23.74 E-value=59 Score=21.55 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=19.3
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeEEE
Q 032760 32 GRANVSKAELKEKLARMYDVKDPNSIFV 59 (134)
Q Consensus 32 g~~Tpsr~eI~~kLA~~~~~~~~~~ivV 59 (134)
|...|+. +.-.+||..|++ +++.++.
T Consensus 59 G~~~ps~-~~l~~ia~~l~v-~~~~l~~ 84 (111)
T 3mlf_A 59 DSTNIKD-SLLSKYMSAFNV-KYDDIFL 84 (111)
T ss_dssp CCTTCCH-HHHHHHHHHHTC-CGGGEEC
T ss_pred CCCCCCH-HHHHHHHHHhCc-CHHHHhC
Confidence 4556664 556899999999 8887763
No 181
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.47 E-value=90 Score=19.41 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHhHcCC
Q 032760 34 ANVSKAELKEKLARMYDV 51 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~ 51 (134)
...+.++|++.++ .|+.
T Consensus 27 ~~~t~~~l~~~F~-~~G~ 43 (97)
T 1why_A 27 PNTSLAALAREFD-RFGS 43 (97)
T ss_dssp SSCCHHHHHHHHH-TTSC
T ss_pred CCCCHHHHHHHHH-hcCC
Confidence 4578889988775 4554
No 182
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=23.46 E-value=1.2e+02 Score=17.96 Aligned_cols=47 Identities=13% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++ .+......+.+.|||.| |+|.+.+..
T Consensus 17 ~~~~~~~l~~~f~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 64 (85)
T 3mdf_A 17 EEVDDKVLHAAFI-PFGD-ITDI----QIPLDYETEKHRGFAFVEFELAEDAAA 64 (85)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEE----ECCEETTTTEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCC-EEEE----EEEECCCCCccccEEEEEECCHHHHHH
Confidence 4567889988874 4554 1122 22233345778888875 777777654
No 183
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=23.19 E-value=1.6e+02 Score=19.05 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhc
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.+||++-++. ||. =.++.++ ..-..|.+.|||.| |.|.+.+...
T Consensus 46 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 46 YGSTAQDLEAHFSS-CGS-INRITIL----CDKFSGHPKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE----EECTTSSCEEEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE----ecCCCCCcccEEEEEECCHHHHHHH
Confidence 34678899888854 453 1222222 22245667788866 7777766543
No 184
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=23.07 E-value=52 Score=18.73 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCC-HH----HHHHHHHhHcCCCCCCeEEE
Q 032760 26 IDVLHPGRANVS-KA----ELKEKLARMYDVKDPNSIFV 59 (134)
Q Consensus 26 ~~v~H~g~~Tps-r~----eI~~kLA~~~~~~~~~~ivV 59 (134)
+.|...++.|+. +. +|-+.|++.+|+ +++.++|
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~-p~~~v~v 43 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDAVEKTTGA-NRQAIHV 43 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCC-CGGGCEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc-CcccEEE
Confidence 344444444554 32 455667778899 6665554
No 185
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=22.92 E-value=1.7e+02 Score=19.22 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. +|. =.++.++ ..-..|.+.|||.| |.|.+.+..
T Consensus 12 ~~~~~~~l~~~f~~-~G~-i~~v~~~----~~~~~~~~~g~afV~f~~~~~A~~ 59 (167)
T 1fxl_A 12 QNMTQEEFRSLFGS-IGE-IESCKLV----RDKITGQSLGYGFVNYIDPKDAEK 59 (167)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEE----eCCCCCcceeEEEEEECCHHHHHH
Confidence 45688899988854 453 1233332 23335678888877 777777654
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=22.91 E-value=1.7e+02 Score=19.32 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+. .||. =.++. +...--.|.+.|||.| |+|.+.|.+
T Consensus 99 ~~~t~~~l~~~f~-~~G~-i~~~~----i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 99 RTITDDQLDTIFG-KYGS-IVQKN----ILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp TTCCHHHHHHHHT-SSSC-EEEEE----EEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHhhh-cCCc-EEEEE----EEEcCCCCCcceEEEEEECCHHHHHH
Confidence 4567788888774 4443 11222 2222235667888887 777777654
No 187
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=22.84 E-value=35 Score=23.39 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++. ||. =.++.++.+- -.+.+.|||.| |+|.+.+.+
T Consensus 57 ~~~te~~L~~~F~~-~G~-i~~v~i~~~~----~~g~~~G~afV~F~~~~~A~~ 104 (135)
T 2lea_A 57 YRTSPDTLRRVFEK-YGR-VGDVYIPRDR----YTKESRGFAFVRFHDKRDAED 104 (135)
T ss_dssp SSCHHHHHHHHHGG-GSC-CSEEECCCCS----SSSSCCSCCEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEecC----CCCccceEEEEEECCHHHHHH
Confidence 45678899888854 564 2333333222 23556777776 777776654
No 188
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.75 E-value=1.3e+02 Score=18.32 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++ .|||.| |+|.+.+..
T Consensus 18 ~~~t~~~l~~~F~~-~G~-i~~v~~~------------~g~afV~f~~~~~A~~ 57 (90)
T 2dnq_A 18 REATEQEIRSLFEQ-YGK-VLECDII------------KNYGFVHIEDKTAAED 57 (90)
T ss_dssp SSCCHHHHHHHHHT-SSC-EEEEEEE------------TTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC-EEEEEEE------------CCEEEEEECCHHHHHH
Confidence 46788899888854 454 1233333 245554 666666543
No 189
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=22.43 E-value=94 Score=23.77 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=23.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
++|.++| .++...-..|++.+++ +++.++++|
T Consensus 216 lei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~~G 247 (301)
T 2b30_A 216 AEVTKLG---HDKYTGINYLLKHYNI-SNDQVLVVG 247 (301)
T ss_dssp EEEEETT---CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred eEecCCC---CCcHHHHHHHHHHcCC-CHHHEEEEC
Confidence 4555543 6889999999999999 776666654
No 190
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=22.35 E-value=78 Score=20.62 Aligned_cols=39 Identities=23% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++ .||. =.++.++ .|||.| |.|.+.+.+
T Consensus 41 ~~~t~~~L~~~F~-~~G~-i~~v~i~------------kg~afV~f~~~~~A~~ 80 (108)
T 2jvo_A 41 LDVQESELNEIFG-PFGP-MKEVKIL------------NGFAFVEFEEAESAAK 80 (108)
T ss_dssp TTCCHHHHHHHHT-TTSC-CCEEEEE------------TTEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEE------------CCEEEEEECCHHHHHH
Confidence 4567889988885 4554 2333333 456666 666665543
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=22.35 E-value=1.1e+02 Score=22.20 Aligned_cols=47 Identities=26% Similarity=0.214 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHhc
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++-++ .||. =.++.++.. ..+.+.|||.| |++.+.|.+.
T Consensus 119 ~~~t~~~L~~~F~-~~G~-v~~v~i~~~-----~~~~~kG~aFVeF~~~e~A~~A 166 (193)
T 2voo_A 119 TDATLDDIKEWLE-DKGQ-VLNIQMRRT-----LHKAFKGSIFVVFDSIESAKKF 166 (193)
T ss_dssp TTCCHHHHHHHHT-TSCC-EEEEEEEEC-----TTCCEEEEEEEEESSHHHHHHH
T ss_pred CcCCHHHHHHHHh-cCCC-EEEEEEEEC-----CCCCcccEEEEEECCHHHHHHH
Confidence 4567788887774 4554 122222222 23778899987 8888877653
No 192
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=22.23 E-value=34 Score=19.97 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeE
Q 032760 32 GRANVSKAELKEKLARMYDVKDPNSI 57 (134)
Q Consensus 32 g~~Tpsr~eI~~kLA~~~~~~~~~~i 57 (134)
|...|+. +.-.+||..|++ +++.+
T Consensus 46 g~~~~~~-~~l~~la~~l~v-~~~~l 69 (71)
T 2ewt_A 46 GDRAVTV-QRLAELADFYGV-PVQEL 69 (71)
T ss_dssp TCSCCCH-HHHHHHHHHHTS-CGGGG
T ss_pred CCCCCCH-HHHHHHHHHHCc-CHHHH
Confidence 4455665 445679999999 76643
No 193
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=22.01 E-value=54 Score=24.89 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.9
Q ss_pred HHHHHHHHHhHcCCCCCCeEEEec
Q 032760 38 KAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 38 r~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
-.++++.||+.+++ +++.|++.+
T Consensus 67 ~~~lr~~la~~~~~-~~~~v~~~~ 89 (365)
T 3get_A 67 MIELKSTLAQKYKV-QNENIIIGA 89 (365)
T ss_dssp CHHHHHHHHHHHTC-CGGGEEEES
T ss_pred hHHHHHHHHHHhCC-CcceEEECC
Confidence 37999999999999 777777643
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=21.59 E-value=2e+02 Score=19.62 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++.++. ||. =.++.+ ...-..|.+.|||.| |+|.+.+.
T Consensus 124 ~~~~~~~l~~~f~~-~G~-v~~~~~----~~~~~~~~~~g~afV~f~~~~~a~ 170 (198)
T 2yh0_A 124 NYLNDDQVKELLTS-FGP-LKAFNL----VKDSATGLSKGYAFCEYVDINVTD 170 (198)
T ss_dssp TTCCHHHHHHHHHT-BSC-EEEEEE----EECTTTCSEEEEEEEEESSSSHHH
T ss_pred CCCCHHHHHHHHHH-cCC-ccEEEE----eecCCCCCcceEEEEEECCHHHHH
Confidence 35678899888854 554 122222 222235667788776 66655553
No 195
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=21.58 E-value=71 Score=21.71 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=28.6
Q ss_pred eeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeE
Q 032760 13 FMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSI 57 (134)
Q Consensus 13 ~~~NpLL~RkEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~i 57 (134)
+....|+...++.|.|.- ..++.||++.+-++|++ +..-|
T Consensus 14 EKs~~~~e~n~y~F~V~~----~anK~eIK~aVE~lf~V-kV~~V 53 (95)
T 2zjr_Q 14 EKAYSAMERGVYSFWVSP----KATKTEIKDAIQQAFGV-RVIGI 53 (95)
T ss_dssp HHHHHHHTTTCCEEEECS----SCTHHHHHHHHHHHHCC-CCSEE
T ss_pred HHHHHHHHCCEEEEEEcC----CCCHHHHHHHHHHHhCC-CceEE
Confidence 334445665668887744 47799999999999999 54433
No 196
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=21.55 E-value=1.2e+02 Score=19.45 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe
Q 032760 34 ANVSKAELKEKLARMYDVKDPNS 56 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ 56 (134)
++-+-.+++++|++..++ +++.
T Consensus 41 ~~~TV~~LK~~I~~~~gi-p~~~ 62 (98)
T 4hcn_B 41 SSDTIDNVKSKIQDKEGI-PPDQ 62 (98)
T ss_dssp TTCBHHHHHHHHHHHHCC-CGGG
T ss_pred CCCcHHHHHHHHHHHhCC-ChhH
Confidence 455789999999999999 5443
No 197
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.52 E-value=2e+02 Score=19.62 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=28.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 26 IDVLHPGRANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
+-|-.- ....+.+||++.+ ..||. =.++.++.+ .|||.| |++.+.|.
T Consensus 34 LfVgNL-p~~vte~dL~~lF-~~fG~-V~~v~i~~~----------kG~AFVeF~~~e~A~ 81 (119)
T 2ad9_A 34 IHIRKL-PIDVTEGEVISLG-LPFGK-VTNLLMLKG----------KNQAFIEMNTEEAAN 81 (119)
T ss_dssp EEEESC-CTTCCHHHHHHHH-TTTSC-CCEEEEEGG----------GTEEEEECSCHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHH-HhcCC-EEEEEEeCC----------CCEEEEEECCHHHHH
Confidence 334443 3467888888766 56775 355665543 366665 66666554
No 198
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=21.25 E-value=68 Score=24.64 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCCeEEEeceEe
Q 032760 33 RANVSKAELKEKLARMYDVKDPNSIFVFKFRT 64 (134)
Q Consensus 33 ~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T 64 (134)
+=.|-+.++++.||+.+++ +++.|-|.-=-|
T Consensus 127 Kl~p~~~~mr~~la~~L~i-~~~~VnVKATT~ 157 (183)
T 3f0d_A 127 KLAPHIDAMRANIAADLDL-PLDRVNVKAKTN 157 (183)
T ss_dssp CCGGGHHHHHHHHHHHHTC-CGGGEEEEEECC
T ss_pred cchhHHHHHHHHHHHHHCC-CcceEEEEEecC
Confidence 5678899999999999999 889998864333
No 199
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=21.18 E-value=70 Score=25.11 Aligned_cols=30 Identities=10% Similarity=0.147 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 31 PGRANVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 31 ~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
++.+++...++.+.||+.+++ +++.|++.+
T Consensus 80 ~~~~~~~~~~l~~~la~~~~~-~~~~v~~~~ 109 (433)
T 1zod_A 80 SEMLSRPVVDLATRLANITPP-GLDRALLLS 109 (433)
T ss_dssp TTCCCHHHHHHHHHHHHHSCT-TCCEEEEES
T ss_pred cccCCHHHHHHHHHHHHhCCC-CcCEEEEeC
Confidence 344566788999999999998 777777663
No 200
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=21.09 E-value=2.5e+02 Score=20.76 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. +|. ....|.+.. ... |.+.|||.| |.|.+.+..
T Consensus 127 ~~~t~~~l~~~f~~-~G~-~i~~v~i~~--~~~--~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 127 PSYTQRNIRDLLQD-INV-VALSIRLPS--LRF--NTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCCEEECC-----------CCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-CeEEEEEEe--CCC--CCcceEEEEEECCHHHHHH
Confidence 46788899988855 663 233443332 222 456667665 666665543
No 201
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.05 E-value=1.8e+02 Score=19.73 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=22.4
Q ss_pred EEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEE
Q 032760 23 QFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSIFV 59 (134)
Q Consensus 23 Ei~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ivV 59 (134)
.+.++|. ++-+-.+|+++|++..|+ +++.+.+
T Consensus 40 ~i~lev~----p~dTV~~lK~~Ia~k~Gi-p~~qQrL 71 (100)
T 1uh6_A 40 KVRVKCN----TDDTIGDLKKLIAAQTGT-RWNKIVL 71 (100)
T ss_dssp CEEEEEE----TTSBHHHHHHHHHHHHCC-CGGGCEE
T ss_pred EEEEEeC----CCCcHHHHHHHHHHHhCC-CHHHEEE
Confidence 3555554 445678999999999999 5555443
No 202
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=21.03 E-value=1.9e+02 Score=19.23 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe--EEEeceEecCCCCEEEEEEEE-eCCHHHHH
Q 032760 34 ANVSKAELKEKLARMYDVKDPNS--IFVFKFRTHFGGGKSTGFGLI-YDSVDSAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~--ivV~~~~T~fG~g~s~g~a~I-Yds~e~~k 85 (134)
.+.+-.+|++.++ .||. =..+ .++..++.. -.|.+.|||.| |.+.+.|.
T Consensus 55 ~~~te~~L~~~F~-~~G~-i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 55 KHVQEKDLKYIFG-RYVD-FSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp TTCCHHHHHHHHG-GGCC-TTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHH-HhCC-cccccccceeeEEec-cCCCcccEEEEEeCCHHHHH
Confidence 4578899998885 4564 2332 011111110 02445666666 66666554
No 203
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=20.87 E-value=1.5e+02 Score=17.86 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=22.2
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeE
Q 032760 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSI 57 (134)
Q Consensus 22 kEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~i 57 (134)
+.+.++|. ++-+-.++++.|++..++ +++..
T Consensus 14 ~~~~~~v~----~~~tV~~lK~~i~~~~~i-~~~~q 44 (85)
T 3mtn_B 14 KTITLEVE----PSDTIENVKAKIQDKEGI-PPDQQ 44 (85)
T ss_dssp CEEEEEEC----TTCBHHHHHHHHHHHHCC-CGGGC
T ss_pred CEEEEEEC----CCCCHHHHHHHHHHHHCc-ChHHE
Confidence 34555543 456789999999999999 55443
No 204
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=20.80 E-value=1.8e+02 Score=18.90 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCCCCHH-----HHHHHHHhHcCCCCCCeEEE
Q 032760 24 FVIDVLHPGRANVSKA-----ELKEKLARMYDVKDPNSIFV 59 (134)
Q Consensus 24 i~~~v~H~g~~Tpsr~-----eI~~kLA~~~~~~~~~~ivV 59 (134)
+.+.|.-.|+-||..+ +|-+.|++.+|+ +++.|+|
T Consensus 58 ~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi-~~~~v~I 97 (112)
T 3b64_A 58 ACVRVEALGGYGPSEPEKVTSIVTAAITKECGI-VADRIFV 97 (112)
T ss_dssp EEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCC-CGGGEEE
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc-CcceEEE
Confidence 4566665665667643 567778889999 7766654
No 205
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=20.75 E-value=84 Score=24.44 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=23.0
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeE
Q 032760 28 VLHPGRANVSKAELKEKLARMYDVKDPNSI 57 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~i 57 (134)
=+|.=..||+.+|+.+.+++|... .+|.+
T Consensus 145 S~Hdf~~TP~~~el~~~~~~~~~~-gaDIv 173 (258)
T 4h3d_A 145 SNHDFNKTPKKEEIVSRLCRMQEL-GADLP 173 (258)
T ss_dssp EEEESSCCCCHHHHHHHHHHHHHT-TCSEE
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh-CCCEE
Confidence 346557899999999999999877 66654
No 206
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=26.04 E-value=21 Score=23.39 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCC--------eEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPN--------SIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~--------~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.++..=.+ .+ +.++.+ -..+.+.|||.| |.|.+.|.+
T Consensus 17 ~~~t~~~l~~~F~~~G~i--~~~~~~~~~~v~i~~~----~~~g~~~g~afV~f~~~~~A~~ 72 (116)
T 2lcw_A 17 ENVTIESVADYFKQIGII--KTNKKTGQPMINLYTD----RETGKLKGEATVSFDDPPSAKA 72 (116)
Confidence 345677888777544333 22 222222 233667888877 566665543
No 207
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=20.54 E-value=1.5e+02 Score=17.81 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=22.3
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeE
Q 032760 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVKDPNSI 57 (134)
Q Consensus 22 kEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~i 57 (134)
+.+.++|. ++-+-.+++++|++..++ +++..
T Consensus 15 ~~~~~~v~----~~~tV~~lK~~i~~~~gi-p~~~q 45 (79)
T 3phx_B 15 RSSTYEVR----LTQTVAHLKQQVSGLEGV-QDDLF 45 (79)
T ss_dssp CEEEEEEC----TTSBHHHHHHHHHHHHTC-CGGGE
T ss_pred CEEEEEEC----CcChHHHHHHHHHhhcCC-CHHHE
Confidence 34555543 456788999999999999 55543
No 208
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=20.50 E-value=50 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032760 35 NVSKAELKEKLARMYDVKDPNSIFVFK 61 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~ivV~~ 61 (134)
.+.-.++++.||+.+++ +++.|++.+
T Consensus 66 ~~~~~~lr~~la~~~~~-~~~~v~~~~ 91 (363)
T 3ffh_A 66 DGWASSLRKEVADFYQL-EEEELIFTA 91 (363)
T ss_dssp ---CHHHHHHHHHHHTC-CGGGEEEES
T ss_pred CcchHHHHHHHHHHhCC-ChhhEEEeC
Confidence 34558999999999999 777776643
No 209
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=20.23 E-value=1.1e+02 Score=20.74 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceEecCCCCEEEEEEEE-eCCHHHHHh
Q 032760 34 ANVSKAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLI-YDSVDSAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~ivV~~~~T~fG~g~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++-++. ||. =.++.++.+ +.|||.| |+|.+.+..
T Consensus 83 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~ 125 (150)
T 2i2y_A 83 NNGNKTELERAFGY-YGP-LRSVWVARN---------PPGFAFVEFEDPRDAAD 125 (150)
T ss_dssp SCCSCHHHHHHHHH-HSC-EEEEEECSS---------SCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-hCC-EEEEEEeeC---------CCcEEEEEECCHHHHHH
Confidence 45678899988865 554 123333322 4667766 677666543
No 210
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=20.23 E-value=1.1e+02 Score=20.36 Aligned_cols=38 Identities=13% Similarity=0.252 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCCCCH-----HHHHHHHHhHcCCCCCCeEEEece
Q 032760 24 FVIDVLHPGRANVSK-----AELKEKLARMYDVKDPNSIFVFKF 62 (134)
Q Consensus 24 i~~~v~H~g~~Tpsr-----~eI~~kLA~~~~~~~~~~ivV~~~ 62 (134)
..++|.-.|.-+|.. +.|-+.|.+.|++ ++|.++|.=.
T Consensus 57 a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi-~~~riyI~f~ 99 (114)
T 3djh_A 57 ALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRI-SPDRVYINYY 99 (114)
T ss_dssp EEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCC-CGGGEEEEEE
T ss_pred EEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCc-CcceEEEEEE
Confidence 345566666666644 4677788888999 8888887533
Done!