Query 032762
Match_columns 134
No_of_seqs 156 out of 233
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:37:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07172 GRP: Glycine rich pro 99.9 2.3E-22 5.1E-27 142.9 10.6 47 1-55 1-47 (95)
2 PF07172 GRP: Glycine rich pro 98.5 9.8E-07 2.1E-11 62.8 8.8 28 6-33 10-37 (95)
3 PF03058 Sar8_2: Sar8.2 family 98.0 7.2E-06 1.6E-10 58.1 3.4 33 1-33 1-34 (93)
4 PF15240 Pro-rich: Proline-ric 92.8 0.058 1.2E-06 42.6 1.5 17 8-24 2-18 (179)
5 COG4371 Predicted membrane pro 92.3 0.59 1.3E-05 39.4 6.9 17 4-20 23-39 (334)
6 PF10731 Anophelin: Thrombin i 90.3 0.25 5.5E-06 32.9 2.3 14 1-14 1-14 (65)
7 PF05887 Trypan_PARP: Procycli 90.0 0.091 2E-06 40.0 0.0 29 1-29 1-29 (143)
8 PLN03134 glycine-rich RNA-bind 84.2 1.2 2.7E-05 33.2 3.2 34 15-52 79-112 (144)
9 PHA02291 hypothetical protein 81.9 1.3 2.7E-05 32.9 2.4 15 1-15 1-15 (132)
10 PF03896 TRAP_alpha: Transloco 80.2 1.2 2.6E-05 37.4 2.0 18 1-18 3-20 (285)
11 COG3784 Uncharacterized protei 79.8 2.4 5.2E-05 30.9 3.2 31 1-33 1-31 (109)
12 PLN00115 pollen allergen group 79.0 1.9 4.1E-05 31.9 2.5 22 1-22 1-22 (118)
13 COG4704 Uncharacterized protei 77.3 2.9 6.4E-05 32.1 3.2 29 1-29 1-29 (151)
14 PRK15058 cytochrome b562; Prov 74.4 4.5 9.8E-05 30.4 3.5 19 15-33 12-30 (128)
15 PF03032 Brevenin: Brevenin/es 74.3 1.7 3.6E-05 27.2 1.0 19 3-21 3-21 (46)
16 PRK02898 cobalt transport prot 73.2 7 0.00015 28.3 4.1 11 23-33 38-48 (100)
17 PF15284 PAGK: Phage-encoded v 71.0 6.7 0.00014 26.0 3.3 11 17-27 18-28 (61)
18 TIGR03068 srtB_sig_NPQTN sorta 70.6 4 8.7E-05 23.9 1.9 20 2-21 7-26 (33)
19 COG4991 Uncharacterized protei 68.0 5.9 0.00013 30.7 3.0 21 2-22 9-29 (155)
20 PF02553 CbiN: Cobalt transpor 64.7 13 0.00028 25.5 3.8 10 23-32 36-45 (74)
21 TIGR03045 PS_II_C550 cytochrom 63.2 7.1 0.00015 30.2 2.6 25 9-33 9-33 (159)
22 CHL00133 psbV photosystem II c 62.7 7.1 0.00015 30.4 2.6 30 4-33 3-34 (163)
23 PRK13619 psbV cytochrome c-550 62.4 6.8 0.00015 30.5 2.4 25 9-33 9-33 (160)
24 PRK10301 hypothetical protein; 62.2 10 0.00022 27.8 3.2 13 15-27 16-28 (124)
25 PF07423 DUF1510: Protein of u 61.4 5.6 0.00012 32.2 1.8 13 9-21 26-38 (217)
26 PRK09125 DNA ligase; Provision 60.8 3.9 8.5E-05 33.8 0.9 17 9-25 10-26 (282)
27 TIGR01659 sex-lethal sex-letha 59.3 13 0.00029 31.6 3.9 19 15-33 238-256 (346)
28 PRK13617 psbV cytochrome c-550 58.2 7.1 0.00015 30.7 1.8 13 19-31 27-39 (170)
29 PF02419 PsbL: PsbL protein; 57.6 14 0.00031 22.1 2.6 15 7-21 19-33 (37)
30 PRK15396 murein lipoprotein; P 57.6 12 0.00026 25.7 2.7 19 1-19 1-19 (78)
31 TIGR02953 penta_MxKDx pentapep 56.3 12 0.00027 25.7 2.6 21 7-27 3-23 (75)
32 PF09403 FadA: Adhesion protei 56.0 4.9 0.00011 30.0 0.6 19 4-22 2-20 (126)
33 PRK13620 psbV cytochrome c-550 55.0 10 0.00023 30.8 2.4 24 10-33 63-86 (215)
34 PF12276 DUF3617: Protein of u 54.8 6.1 0.00013 29.2 1.0 9 4-12 2-10 (162)
35 COG3354 FlaG Putative archaeal 53.3 14 0.00031 28.5 2.8 21 1-21 1-21 (154)
36 PF06411 HdeA: HdeA/HdeB famil 52.8 4.6 9.9E-05 28.0 0.0 17 4-20 1-17 (94)
37 PLN03207 stomagen; Provisional 52.2 13 0.00028 27.1 2.3 8 113-120 84-91 (113)
38 PF10690 Myticin-prepro: Mytic 52.0 4.8 0.0001 28.9 0.0 16 4-19 2-17 (98)
39 PRK10772 cell division protein 51.3 24 0.00052 25.7 3.6 26 8-33 30-55 (108)
40 PRK13618 psbV cytochrome c-550 51.1 18 0.00039 28.1 3.0 13 21-33 22-34 (163)
41 PF10749 DUF2534: Protein of u 50.3 32 0.00068 24.2 3.9 21 3-23 12-33 (85)
42 PLN03161 Probable xyloglucan e 48.9 11 0.00024 31.8 1.7 21 1-21 1-21 (291)
43 COG2869 NqrC Na+-transporting 48.8 8.8 0.00019 32.0 1.1 18 6-23 15-32 (264)
44 TIGR01495 ETRAMP Plasmodium ri 48.6 14 0.0003 25.8 1.9 18 3-20 4-21 (85)
45 TIGR02209 ftsL_broad cell divi 47.6 41 0.00089 22.1 4.1 11 15-25 16-26 (85)
46 COG2854 Ttg2D ABC-type transpo 47.5 8.7 0.00019 30.9 0.8 20 1-20 2-21 (202)
47 PRK15240 resistance to complem 47.4 12 0.00026 29.2 1.6 16 4-19 2-17 (185)
48 PF00879 Defensin_propep: Defe 47.2 16 0.00034 23.5 1.8 12 17-28 11-22 (52)
49 COG3495 Uncharacterized protei 46.5 14 0.00031 28.7 1.8 21 4-24 2-22 (166)
50 PF03823 Neurokinin_B: Neuroki 45.3 33 0.00073 22.5 3.2 14 7-20 5-18 (59)
51 PF12048 DUF3530: Protein of u 45.0 20 0.00044 29.9 2.7 22 5-26 4-25 (310)
52 PF05399 EVI2A: Ectropic viral 44.8 33 0.00073 28.1 3.8 16 15-30 145-160 (227)
53 KOG4087 Phospholipase A2 [Lipi 44.0 64 0.0014 24.8 5.0 30 4-33 2-33 (144)
54 COG5510 Predicted small secret 44.0 32 0.00069 21.4 2.8 12 9-20 10-21 (44)
55 PF12092 DUF3568: Protein of u 43.8 17 0.00036 27.2 1.8 14 4-17 1-14 (131)
56 PRK10894 lipopolysaccharide tr 42.9 20 0.00043 27.5 2.2 10 14-23 12-21 (180)
57 PHA03255 BDLF3; Provisional 42.4 21 0.00045 28.7 2.2 14 6-19 194-207 (234)
58 PF07438 DUF1514: Protein of u 41.9 40 0.00087 22.6 3.2 14 8-21 4-17 (66)
59 PF05513 TraA: TraA; InterPro 41.6 34 0.00073 25.5 3.1 23 9-31 39-61 (119)
60 PF12869 tRNA_anti-like: tRNA_ 41.2 10 0.00022 27.3 0.3 9 1-9 1-10 (144)
61 PRK09810 entericidin A; Provis 41.2 33 0.0007 21.0 2.5 8 4-11 3-10 (41)
62 PRK06531 yajC preprotein trans 41.2 47 0.001 24.3 3.8 20 1-20 1-20 (113)
63 PF12097 DUF3573: Protein of u 41.1 18 0.0004 31.6 1.9 21 1-21 1-21 (383)
64 PRK10260 L,D-transpeptidase; P 41.1 18 0.00039 30.8 1.8 24 1-25 1-24 (306)
65 PF04885 Stig1: Stigma-specifi 41.0 8.6 0.00019 29.1 -0.1 15 7-21 3-17 (136)
66 PF12477 TraW_N: Sex factor F 41.0 15 0.00032 21.1 0.9 13 15-27 8-20 (31)
67 PRK10318 hypothetical protein; 40.6 31 0.00067 25.8 2.8 11 7-17 6-16 (121)
68 TIGR00547 lolA periplasmic cha 40.0 38 0.00083 26.7 3.4 6 6-11 5-10 (204)
69 PRK09455 rseB anti-sigma E fac 39.8 15 0.00032 31.1 1.1 21 4-24 2-22 (319)
70 PLN00212 glutelin; Provisional 39.8 28 0.0006 31.5 2.9 20 1-21 1-20 (493)
71 COG3017 LolB Outer membrane li 39.7 19 0.00041 29.2 1.6 21 2-22 3-23 (206)
72 PF06796 NapE: Periplasmic nit 39.6 35 0.00076 22.2 2.6 15 4-18 19-33 (56)
73 PF11912 DUF3430: Protein of u 39.4 25 0.00053 26.9 2.2 15 4-18 2-16 (212)
74 PLN03024 Putative EG45-like do 38.4 19 0.00042 26.6 1.4 9 2-10 1-9 (125)
75 PRK00753 psbL photosystem II r 38.4 36 0.00078 20.6 2.3 11 11-21 25-35 (39)
76 PF12930 DUF3836: Family of un 38.0 9.2 0.0002 28.6 -0.3 12 4-15 8-19 (132)
77 PF14060 DUF4252: Domain of un 37.5 54 0.0012 23.8 3.8 8 4-11 1-8 (155)
78 PRK12750 cpxP periplasmic repr 36.9 31 0.00067 26.7 2.4 14 3-16 4-17 (170)
79 PF14147 Spore_YhaL: Sporulati 36.7 74 0.0016 20.4 3.7 17 6-22 7-23 (52)
80 COG4856 Uncharacterized protei 36.6 23 0.0005 31.3 1.8 19 2-20 6-25 (403)
81 PRK15307 major fimbrial protei 36.4 30 0.00066 26.9 2.3 15 1-15 1-15 (201)
82 PRK10780 periplasmic chaperone 35.9 43 0.00093 25.2 3.0 6 4-9 2-7 (165)
83 PLN00213 predicted protein; Pr 35.8 29 0.00063 25.8 2.0 19 1-19 1-19 (118)
84 PRK13881 conjugal transfer pro 35.7 50 0.0011 29.9 3.8 20 13-32 38-57 (472)
85 COG4890 Predicted outer membra 35.6 75 0.0016 18.9 3.3 24 8-32 7-30 (37)
86 TIGR02972 TMAO_torE trimethyla 35.5 46 0.001 20.9 2.6 14 4-17 11-24 (47)
87 PRK12592 putative monovalent c 35.4 93 0.002 23.2 4.7 18 12-29 80-97 (126)
88 PF02699 YajC: Preprotein tran 35.3 87 0.0019 21.2 4.2 16 6-21 5-20 (82)
89 COG4313 Protein involved in me 35.3 28 0.00062 29.7 2.1 15 1-15 4-18 (304)
90 PRK11063 metQ DL-methionine tr 35.0 37 0.00081 27.7 2.7 12 1-12 1-14 (271)
91 PRK13893 conjugal transfer pro 34.7 24 0.00052 28.3 1.5 16 1-17 1-16 (193)
92 KOG4207 Predicted splicing fac 34.5 8.3 0.00018 31.8 -1.1 36 15-54 58-93 (256)
93 PF11839 DUF3359: Protein of u 34.2 38 0.00081 24.3 2.3 15 4-18 2-16 (96)
94 COG4238 Murein lipoprotein [Ce 34.2 36 0.00078 23.5 2.1 18 1-18 1-18 (78)
95 PRK10641 btuB vitamin B12/coba 34.0 10 0.00022 33.3 -0.8 16 1-16 1-16 (614)
96 PF11162 DUF2946: Protein of u 33.9 56 0.0012 21.5 3.1 12 5-16 3-14 (122)
97 TIGR02973 nitrate_rd_NapE peri 33.7 53 0.0011 20.2 2.6 16 4-19 6-21 (42)
98 PF13623 SurA_N_2: SurA N-term 33.7 20 0.00044 26.9 0.9 18 6-23 10-27 (145)
99 PF05984 Cytomega_UL20A: Cytom 33.7 31 0.00066 24.6 1.7 19 1-21 1-19 (100)
100 PF09919 DUF2149: Uncharacteri 33.5 47 0.001 23.4 2.7 20 1-20 1-21 (92)
101 PRK03577 acid shock protein pr 33.5 37 0.00079 24.6 2.1 16 8-23 4-19 (102)
102 COG1930 CbiN ABC-type cobalt t 33.0 49 0.0011 23.8 2.7 9 10-18 13-21 (97)
103 PRK06193 hypothetical protein; 32.8 19 0.0004 28.8 0.6 9 1-9 1-9 (206)
104 PF09716 ETRAMP: Malarial earl 32.5 38 0.00082 23.2 2.1 17 3-19 4-20 (84)
105 MTH00261 ATP8 ATP synthase F0 32.4 46 0.001 22.0 2.3 15 6-20 14-28 (68)
106 PF14208 DUF4320: Domain of un 32.4 71 0.0015 23.3 3.6 21 7-27 7-27 (116)
107 COG4744 Uncharacterized conser 32.3 46 0.001 24.7 2.6 7 9-15 31-37 (121)
108 COG3116 FtsL Cell division pro 32.2 77 0.0017 23.1 3.6 22 10-31 30-51 (105)
109 COG2834 LolA Outer membrane li 32.1 52 0.0011 25.7 3.0 7 24-30 28-34 (211)
110 CHL00038 psbL photosystem II p 32.1 53 0.0012 19.8 2.3 10 12-21 25-34 (38)
111 TIGR02830 spore_III_AG stage I 32.1 40 0.00087 26.7 2.4 14 7-20 6-19 (186)
112 COG3745 CpaB Flp pilus assembl 32.0 42 0.00092 28.3 2.6 18 1-18 1-18 (276)
113 PRK13838 conjugal transfer pil 31.9 54 0.0012 25.4 3.0 12 1-12 1-12 (176)
114 PRK15137 DNA-specific endonucl 31.9 28 0.00061 28.7 1.5 11 1-11 1-11 (235)
115 PRK11067 outer membrane protei 31.2 38 0.00083 31.2 2.4 12 1-12 1-12 (803)
116 PRK13680 hypothetical protein; 30.4 41 0.00089 25.0 2.0 15 5-19 5-19 (117)
117 PRK05886 yajC preprotein trans 30.3 79 0.0017 23.0 3.5 16 6-21 7-22 (109)
118 TIGR03656 IsdC heme uptake pro 29.9 29 0.00062 28.3 1.2 21 4-24 2-24 (217)
119 PRK11566 hdeB acid-resistance 28.6 47 0.001 24.1 2.0 17 4-20 2-18 (102)
120 PF12555 TPPK_C: Thiamine pyro 28.6 80 0.0017 19.8 2.9 8 9-16 21-28 (53)
121 PF02402 Lysis_col: Lysis prot 28.4 16 0.00035 22.9 -0.3 17 5-21 3-19 (46)
122 PF02084 Bindin: Bindin; Inte 28.3 3.1E+02 0.0066 22.8 6.9 6 28-33 156-161 (238)
123 TIGR03778 VPDSG_CTERM VPDSG-CT 28.3 83 0.0018 17.5 2.5 13 5-17 7-19 (26)
124 PF07437 YfaZ: YfaZ precursor; 28.2 29 0.00064 27.0 1.0 22 4-27 2-23 (180)
125 PF06692 MNSV_P7B: Melon necro 28.1 56 0.0012 21.4 2.1 10 7-16 16-25 (61)
126 PRK11009 aphA acid phosphatase 28.1 49 0.0011 26.8 2.3 17 4-20 2-18 (237)
127 PLN02682 pectinesterase family 28.0 20 0.00044 31.2 0.1 17 7-23 7-23 (369)
128 TIGR02659 TTQ_MADH_Lt methylam 28.0 40 0.00088 26.9 1.7 30 102-134 130-159 (186)
129 PF06103 DUF948: Bacterial pro 27.9 71 0.0015 21.4 2.8 13 5-17 9-21 (90)
130 PF13893 RRM_5: RNA recognitio 27.9 8.1 0.00018 23.3 -1.8 31 15-49 24-54 (56)
131 COG4727 Uncharacterized protei 27.7 68 0.0015 26.9 3.1 15 1-15 1-15 (287)
132 COG5353 Uncharacterized protei 27.6 67 0.0015 25.0 2.9 13 9-21 17-29 (161)
133 PRK06287 cobalt transport prot 27.4 74 0.0016 22.8 2.9 11 1-11 2-12 (107)
134 PRK05996 motB flagellar motor 27.3 98 0.0021 27.6 4.2 8 8-15 43-50 (423)
135 PRK09838 periplasmic copper-bi 26.9 57 0.0012 23.8 2.3 9 13-21 10-18 (115)
136 PF07271 Cytadhesin_P30: Cytad 26.7 78 0.0017 26.8 3.3 12 6-17 12-23 (279)
137 KOG0111 Cyclophilin-type pepti 26.6 14 0.00031 30.8 -1.1 26 24-53 64-89 (298)
138 PF01307 Plant_vir_prot: Plant 26.4 51 0.0011 23.7 1.9 18 3-20 8-25 (104)
139 KOG3555 Ca2+-binding proteogly 26.2 72 0.0016 28.2 3.1 20 5-24 3-22 (434)
140 COG1320 MnhG Multisubunit Na+/ 26.1 93 0.002 22.7 3.3 23 11-33 70-92 (113)
141 PF10614 CsgF: Type VIII secre 25.9 24 0.00053 26.9 0.2 23 4-28 2-24 (142)
142 PRK10455 periplasmic protein; 25.6 68 0.0015 24.6 2.6 13 10-22 6-18 (161)
143 PRK10208 acid-resistance prote 25.6 56 0.0012 24.2 2.0 16 4-19 5-22 (114)
144 CHL00066 psbH photosystem II p 25.4 55 0.0012 22.4 1.8 10 12-21 49-58 (73)
145 PRK10095 ribonuclease I; Provi 25.4 44 0.00095 27.8 1.6 6 115-120 118-123 (268)
146 PRK09973 putative outer membra 25.4 76 0.0017 22.2 2.6 15 4-18 3-17 (85)
147 PF03866 HAP: Hydrophobic abun 25.2 98 0.0021 23.9 3.3 20 5-24 3-22 (164)
148 PRK11372 lysozyme inhibitor; P 25.1 65 0.0014 23.2 2.3 11 1-11 1-11 (109)
149 PF07127 Nodulin_late: Late no 25.1 75 0.0016 19.7 2.3 9 9-17 11-19 (54)
150 PHA02054 hypothetical protein 25.0 46 0.001 23.5 1.4 20 3-22 2-21 (94)
151 COG3470 Tpd Uncharacterized pr 24.9 62 0.0013 25.5 2.2 16 1-16 1-16 (179)
152 COG1991 Uncharacterized conser 24.5 1.1E+02 0.0023 23.2 3.4 6 3-8 17-22 (131)
153 PRK01326 prsA foldase protein 24.3 65 0.0014 26.8 2.5 9 4-12 3-11 (310)
154 PRK09125 DNA ligase; Provision 24.2 38 0.00083 27.9 1.1 16 6-21 1-16 (282)
155 PLN00055 photosystem II reacti 23.9 61 0.0013 22.2 1.8 10 12-21 49-58 (73)
156 PF05479 PsaN: Photosystem I r 23.9 25 0.00055 26.8 -0.1 7 6-12 34-40 (138)
157 PRK03554 tatA twin arginine tr 23.8 64 0.0014 22.9 2.0 8 8-15 10-17 (89)
158 PF08999 SP_C-Propep: Surfacta 23.8 1E+02 0.0023 21.7 3.0 15 4-18 34-48 (93)
159 PF04956 TrbC: TrbC/VIRB2 fami 23.7 79 0.0017 21.4 2.4 12 15-26 20-31 (99)
160 PF11355 DUF3157: Protein of u 23.5 51 0.0011 26.6 1.6 12 4-15 2-13 (199)
161 PLN02713 Probable pectinestera 23.5 71 0.0015 29.3 2.7 21 1-21 1-21 (566)
162 PF07771 TSGP1: Tick salivary 23.4 36 0.00078 25.1 0.7 8 98-105 70-77 (120)
163 TIGR01944 rnfB electron transp 23.1 57 0.0012 24.6 1.8 16 8-23 11-26 (165)
164 PF14991 MLANA: Protein melan- 23.1 28 0.0006 25.9 0.0 13 8-20 31-43 (118)
165 PRK14018 trifunctional thiored 22.9 70 0.0015 29.1 2.5 22 1-22 1-22 (521)
166 PF10956 DUF2756: Protein of u 22.9 67 0.0015 23.4 2.0 9 4-12 2-10 (104)
167 PRK02463 OxaA-like protein pre 22.5 78 0.0017 26.8 2.6 19 4-22 6-24 (307)
168 PRK10259 hypothetical protein; 22.4 94 0.002 21.7 2.6 12 5-16 5-16 (86)
169 PF11777 DUF3316: Protein of u 22.4 89 0.0019 22.2 2.6 7 4-10 2-8 (114)
170 PF07312 DUF1459: Protein of u 22.4 81 0.0018 22.1 2.2 11 1-11 1-11 (84)
171 PF06990 Gal-3-0_sulfotr: Gala 22.4 44 0.00096 29.2 1.1 19 3-21 17-35 (402)
172 PRK11443 lipoprotein; Provisio 22.2 73 0.0016 23.5 2.1 8 4-11 2-9 (124)
173 KOG4742 Predicted chitinase [G 22.2 65 0.0014 27.3 2.1 7 106-112 171-177 (286)
174 TIGR00842 bcct choline/carniti 22.2 1.6E+02 0.0035 26.3 4.6 19 6-24 358-376 (453)
175 PF00737 PsbH: Photosystem II 22.1 69 0.0015 20.6 1.7 9 12-20 34-42 (52)
176 PLN00054 photosystem I reactio 22.0 72 0.0016 24.2 2.0 7 27-33 58-64 (139)
177 PRK01622 OxaA-like protein pre 22.0 85 0.0018 25.6 2.7 21 2-22 3-23 (256)
178 TIGR02052 MerP mercuric transp 21.9 73 0.0016 19.6 1.8 6 4-9 2-7 (92)
179 PF13999 MarB: MarB protein 21.9 68 0.0015 21.6 1.7 7 16-22 8-14 (66)
180 PRK12450 foldase protein PrsA; 21.9 86 0.0019 26.1 2.7 13 3-15 4-16 (309)
181 PF07390 P30: Mycoplasma P30 p 21.8 43 0.00092 27.5 0.8 20 1-20 1-20 (266)
182 TIGR00156 conserved hypothetic 21.7 87 0.0019 23.3 2.4 6 4-9 2-7 (126)
183 PRK12587 putative monovalent c 21.5 1.9E+02 0.0041 21.2 4.2 16 12-27 73-88 (118)
184 KOG4251 Calcium binding protei 21.5 26 0.00056 29.8 -0.5 28 1-30 8-41 (362)
185 PRK06778 hypothetical protein; 21.5 1E+02 0.0023 25.6 3.1 9 25-33 51-59 (289)
186 PRK15206 long polar fimbrial p 21.5 70 0.0015 27.8 2.2 17 1-17 1-17 (359)
187 PRK10510 putative outer membra 21.5 78 0.0017 25.2 2.3 20 3-22 2-21 (219)
188 TIGR03043 PS_II_psbZ photosyst 21.4 1E+02 0.0022 20.1 2.4 17 5-21 3-19 (58)
189 PRK12670 putative monovalent c 21.2 2E+02 0.0044 20.3 4.2 20 11-30 66-85 (99)
190 PRK13871 conjugal transfer pro 21.1 96 0.0021 23.6 2.6 9 1-9 1-9 (135)
191 PF01737 Ycf9: YCF9; InterPro 21.1 1.1E+02 0.0024 20.1 2.5 17 5-21 3-19 (59)
192 TIGR03063 srtB_target sortase 20.9 1.4E+02 0.0029 16.9 2.6 9 6-14 11-19 (29)
193 PF15281 Consortin_C: Consorti 20.9 83 0.0018 23.2 2.1 14 7-20 55-68 (113)
194 PF06404 PSK: Phytosulfokine p 20.7 28 0.0006 24.0 -0.4 10 20-29 10-19 (81)
195 PF06716 DUF1201: Protein of u 20.7 1.5E+02 0.0032 18.9 2.9 7 4-10 6-12 (54)
196 COG3637 Opacity protein and re 20.7 94 0.002 24.2 2.6 8 4-11 2-9 (199)
197 PRK13792 lysozyme inhibitor; P 20.6 70 0.0015 23.9 1.7 8 4-11 3-10 (127)
198 PF01998 DUF131: Protein of un 20.6 1.2E+02 0.0026 20.1 2.6 14 4-17 42-55 (64)
199 CHL00190 psaM photosystem I su 20.5 1.8E+02 0.004 16.5 3.8 15 1-15 1-15 (30)
200 PRK11546 zraP zinc resistance 20.5 1.3E+02 0.0028 23.0 3.2 15 12-26 13-27 (143)
201 PF12988 DUF3872: Domain of un 20.4 34 0.00073 26.1 0.0 22 1-22 1-22 (137)
202 TIGR03302 OM_YfiO outer membra 20.4 61 0.0013 24.5 1.4 11 9-19 4-14 (235)
203 TIGR02738 TrbB type-F conjugat 20.3 1.7E+02 0.0036 22.0 3.8 10 4-13 3-12 (153)
204 PRK03625 tatE twin arginine tr 20.3 77 0.0017 21.2 1.7 10 8-17 10-19 (67)
205 COG2143 Thioredoxin-related pr 20.3 95 0.0021 24.6 2.5 7 13-19 10-16 (182)
206 PLN02196 abscisic acid 8'-hydr 20.1 86 0.0019 26.8 2.4 19 1-19 1-19 (463)
207 PRK08055 chorismate mutase; Pr 20.1 1.4E+02 0.0031 23.4 3.5 6 18-23 17-22 (181)
208 PRK09950 putative transporter; 20.0 2E+02 0.0043 26.1 4.8 19 6-24 404-422 (506)
No 1
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=99.88 E-value=2.3e-22 Score=142.95 Aligned_cols=47 Identities=60% Similarity=0.868 Sum_probs=37.8
Q ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHhccccccCccccCcccccCCCccCC
Q 032762 1 MGSKVFLMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNG 55 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~gG 55 (134)
||||+||||+||||+||||||||+||+++++.+ ++++++|+|+++++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~~~~~~--------~~~~~~v~~~~~~g 47 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAARELEETEK--------EEEENEVQDDKYGG 47 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHhhhccc--------cccCCCCCccccCC
Confidence 999999999999999999999999999843322 23456788887743
No 2
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=98.51 E-value=9.8e-07 Score=62.83 Aligned_cols=28 Identities=18% Similarity=0.157 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcc
Q 032762 6 FLMLGLLVSIVLLISSEAAARDLAETSN 33 (134)
Q Consensus 6 ~llL~l~la~~LlvSSevaArelaE~~~ 33 (134)
.|||++||+++..+|++..+++.+++++
T Consensus 10 ~l~LA~lLlisSevaa~~~~~~~~~~~~ 37 (95)
T PF07172_consen 10 GLLLAALLLISSEVAARELEETEKEEEE 37 (95)
T ss_pred HHHHHHHHHHHhhhhhHHhhhccccccC
Confidence 4667777778888887666444333333
No 3
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=97.97 E-value=7.2e-06 Score=58.15 Aligned_cols=33 Identities=42% Similarity=0.562 Sum_probs=27.6
Q ss_pred CchhHHHHHHHHHHHHH-HhhhHHHHHHHHHhcc
Q 032762 1 MGSKVFLMLGLLVSIVL-LISSEAAARDLAETSN 33 (134)
Q Consensus 1 M~sK~~llL~l~la~~L-lvSSevaArelaE~~~ 33 (134)
|+||+-|||.|.||++| .|||+|.|||..|++.
T Consensus 1 M~~Ktnlfl~lSLailLmIISSqv~AREms~A~a 34 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLMIISSQVDAREMSKASA 34 (93)
T ss_pred CcchhhhHHHHHHHHHHHHHhhHHHHHHHhcccc
Confidence 99999999999886654 6888999999887764
No 4
>PF15240 Pro-rich: Proline-rich
Probab=92.79 E-value=0.058 Score=42.62 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhHHH
Q 032762 8 MLGLLVSIVLLISSEAA 24 (134)
Q Consensus 8 lL~l~la~~LlvSSeva 24 (134)
||+||.|+||.+||+..
T Consensus 2 LlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQS 18 (179)
T ss_pred hhHHHHHHHHHhhhccc
Confidence 56666677777887654
No 5
>COG4371 Predicted membrane protein [Function unknown]
Probab=92.31 E-value=0.59 Score=39.37 Aligned_cols=17 Identities=12% Similarity=0.397 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHhh
Q 032762 4 KVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 4 K~~llL~l~la~~LlvS 20 (134)
|.++++.++||+.|++.
T Consensus 23 gT~~~~gfvLa~al~~~ 39 (334)
T COG4371 23 GTLALGGFVLAAALFVP 39 (334)
T ss_pred hhHHHHHHHHHHHHcCC
Confidence 44556666666655543
No 6
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=90.32 E-value=0.25 Score=32.85 Aligned_cols=14 Identities=36% Similarity=0.446 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVS 14 (134)
Q Consensus 1 M~sK~~llL~l~la 14 (134)
||||.||+-.|.+|
T Consensus 1 MA~Kl~vialLC~a 14 (65)
T PF10731_consen 1 MASKLIVIALLCVA 14 (65)
T ss_pred CcchhhHHHHHHHH
Confidence 99986665444333
No 7
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=89.99 E-value=0.091 Score=39.98 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIVLLISSEAAARDLA 29 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSSevaArela 29 (134)
|+-+.|+||+|||.+.+||+...+|+.+.
T Consensus 1 m~pr~l~~LavLL~~A~Lfag~g~AaAad 29 (143)
T PF05887_consen 1 MTPRHLCLLAVLLFGAALFAGVGSAAAAD 29 (143)
T ss_dssp -----------------------------
T ss_pred Ccccccccccccccccccccccccccccc
Confidence 77888888888777777777766555443
No 8
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=84.24 E-value=1.2 Score=33.15 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++++|+.++++++ .. ++..+.+.|+.++
T Consensus 79 aFV~F~~~e~A~~Al~~ln-g~---~i~Gr~l~V~~a~ 112 (144)
T PLN03134 79 GFVNFNDEGAATAAISEMD-GK---ELNGRHIRVNPAN 112 (144)
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEeCC
Confidence 4677888888888888776 32 4566677776553
No 9
>PHA02291 hypothetical protein
Probab=81.85 E-value=1.3 Score=32.91 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=10.5
Q ss_pred CchhHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSI 15 (134)
Q Consensus 1 M~sK~~llL~l~la~ 15 (134)
|.||+.|+.+|++++
T Consensus 1 MS~K~~iFYiL~~~V 15 (132)
T PHA02291 1 MSRKASIFYILVVIV 15 (132)
T ss_pred CCcchhhHHHHHHHH
Confidence 889987776665544
No 10
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=80.19 E-value=1.2 Score=37.40 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=9.4
Q ss_pred CchhHHHHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIVLL 18 (134)
Q Consensus 1 M~sK~~llL~l~la~~Ll 18 (134)
|.||.+||+.|+|.+.||
T Consensus 3 ~~~~~~ll~ll~~p~~l~ 20 (285)
T PF03896_consen 3 FLSRLILLALLVFPATLL 20 (285)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 346666665554444444
No 11
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.79 E-value=2.4 Score=30.91 Aligned_cols=31 Identities=42% Similarity=0.314 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHhcc
Q 032762 1 MGSKVFLMLGLLVSIVLLISSEAAARDLAETSN 33 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSSevaArelaE~~~ 33 (134)
|-.|..|+|+|+++. |+|+.+.|-++.|+.+
T Consensus 1 mm~~~~l~la~~a~g--l~s~sa~altld~A~t 31 (109)
T COG3784 1 MMMKRTLLLALLALG--LASSSAMALTLDEART 31 (109)
T ss_pred CcHHHHHHHHHHHHh--hcchHHHHhhHHHHHh
Confidence 445677777776444 6777777888877765
No 12
>PLN00115 pollen allergen group 3; Provisional
Probab=79.01 E-value=1.9 Score=31.86 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHHHHHHhhhH
Q 032762 1 MGSKVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSSe 22 (134)
|+|..+||++++||+++.+.+.
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~~~ 22 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVGSC 22 (118)
T ss_pred CchhHHHHHHHHHHHHhhhhhc
Confidence 8888888877788887777654
No 13
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.29 E-value=2.9 Score=32.06 Aligned_cols=29 Identities=31% Similarity=0.170 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIVLLISSEAAARDLA 29 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSSevaArela 29 (134)
|-+|+.+-|.|++|++-|+++.++|.+++
T Consensus 1 m~~~~~~~l~Ll~aa~sL~~~~aaaaeat 29 (151)
T COG4704 1 MLNISRRRLFLLAAALSLVSLKAAAAEAT 29 (151)
T ss_pred CccHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 66777777778777777787777655543
No 14
>PRK15058 cytochrome b562; Provisional
Probab=74.36 E-value=4.5 Score=30.37 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=9.2
Q ss_pred HHHHhhhHHHHHHHHHhcc
Q 032762 15 IVLLISSEAAARDLAETSN 33 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~ 33 (134)
++|++|+.+-|.++.+.|+
T Consensus 12 ~~l~~s~~a~Aa~l~~~M~ 30 (128)
T PRK15058 12 SSLVFSSASFAADLEDNME 30 (128)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 3344555444555555443
No 15
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=74.30 E-value=1.7 Score=27.21 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 032762 3 SKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 3 sK~~llL~l~la~~LlvSS 21 (134)
.|+.|||.+||.++.|...
T Consensus 3 lKKsllLlfflG~ISlSlC 21 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLC 21 (46)
T ss_pred chHHHHHHHHHHHcccchH
Confidence 3666777676655444433
No 16
>PRK02898 cobalt transport protein CbiN; Provisional
Probab=73.24 E-value=7 Score=28.26 Aligned_cols=11 Identities=9% Similarity=0.048 Sum_probs=5.1
Q ss_pred HHHHHHHHhcc
Q 032762 23 AAARDLAETSN 33 (134)
Q Consensus 23 vaArelaE~~~ 33 (134)
..|++++++.+
T Consensus 38 ~~A~~~I~ei~ 48 (100)
T PRK02898 38 GQAEEAITEIA 48 (100)
T ss_pred HHHHHHHHHhC
Confidence 34555554433
No 17
>PF15284 PAGK: Phage-encoded virulence factor
Probab=70.99 E-value=6.7 Score=26.01 Aligned_cols=11 Identities=36% Similarity=0.217 Sum_probs=5.2
Q ss_pred HHhhhHHHHHH
Q 032762 17 LLISSEAAARD 27 (134)
Q Consensus 17 LlvSSevaAre 27 (134)
.++|+.+-|++
T Consensus 18 ~~FSasamAa~ 28 (61)
T PF15284_consen 18 AGFSASAMAAD 28 (61)
T ss_pred hhhhHHHHHHh
Confidence 34555554443
No 18
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=70.63 E-value=4 Score=23.89 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHhhh
Q 032762 2 GSKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 2 ~sK~~llL~l~la~~LlvSS 21 (134)
++++++.++.+.++|||++-
T Consensus 7 gtp~y~y~Ip~v~lflL~~~ 26 (33)
T TIGR03068 7 GTPAYIYAIPVASLALLIAI 26 (33)
T ss_pred CCcchhhHHHHHHHHHHHHH
Confidence 45778887777777777753
No 19
>COG4991 Uncharacterized protein with a bacterial SH3 domain homologue [Function unknown]
Probab=67.97 E-value=5.9 Score=30.71 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=11.3
Q ss_pred chhHHHHHHHHHHHHHHhhhH
Q 032762 2 GSKVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 2 ~sK~~llL~l~la~~LlvSSe 22 (134)
.|++.|+.++++.++|++++.
T Consensus 9 ~~~~~~~~A~a~~~~l~~~~~ 29 (155)
T COG4991 9 LSMKTLMRASAFGLALLMPAA 29 (155)
T ss_pred HhHHHHHHHHHHHHHHHhHHH
Confidence 455556666655555555443
No 20
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=64.65 E-value=13 Score=25.47 Aligned_cols=10 Identities=20% Similarity=0.292 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 032762 23 AAARDLAETS 32 (134)
Q Consensus 23 vaArelaE~~ 32 (134)
..|++++++.
T Consensus 36 ~~A~~~I~~~ 45 (74)
T PF02553_consen 36 DQAEEMIEEI 45 (74)
T ss_pred HHHHHHHHHh
Confidence 3445555443
No 21
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=63.24 E-value=7.1 Score=30.18 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcc
Q 032762 9 LGLLVSIVLLISSEAAARDLAETSN 33 (134)
Q Consensus 9 L~l~la~~LlvSSevaArelaE~~~ 33 (134)
++++|.++.++++.+.|.++.|++-
T Consensus 9 ~~~~~~~~~~~~~~~~a~~~~~~~~ 33 (159)
T TIGR03045 9 LALLLLLIQLNVGPAQAAELDEETR 33 (159)
T ss_pred HHHHHHHHHHccchHHHHhcccccc
Confidence 3444455556666676677666443
No 22
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=62.68 E-value=7.1 Score=30.36 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=17.0
Q ss_pred hHHHHH--HHHHHHHHHhhhHHHHHHHHHhcc
Q 032762 4 KVFLML--GLLVSIVLLISSEAAARDLAETSN 33 (134)
Q Consensus 4 K~~llL--~l~la~~LlvSSevaArelaE~~~ 33 (134)
|+|+++ +++|.+|.++.+.+.|.++.|++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 34 (163)
T CHL00133 3 KKFSSLFLLVFLLIFSIFVSSALAIELDEATR 34 (163)
T ss_pred HHHHHHHHHHHHHHHHHcccchhHhhccccce
Confidence 454443 333444455666677777777654
No 23
>PRK13619 psbV cytochrome c-550; Provisional
Probab=62.39 E-value=6.8 Score=30.53 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhcc
Q 032762 9 LGLLVSIVLLISSEAAARDLAETSN 33 (134)
Q Consensus 9 L~l~la~~LlvSSevaArelaE~~~ 33 (134)
++++|++|.++++.+.|.++.|++-
T Consensus 9 ~~~~~~~~~~~~~~a~a~eld~~~~ 33 (160)
T PRK13619 9 IATVFFFLQFQVNSANALELDEATR 33 (160)
T ss_pred HHHHHHHHHHhccchhHhhccccce
Confidence 3444555555666677777766543
No 24
>PRK10301 hypothetical protein; Provisional
Probab=62.22 E-value=10 Score=27.77 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=5.3
Q ss_pred HHHHhhhHHHHHH
Q 032762 15 IVLLISSEAAARD 27 (134)
Q Consensus 15 ~~LlvSSevaAre 27 (134)
+++++++.+.|-.
T Consensus 16 ~~~~~~~~A~AHa 28 (124)
T PRK10301 16 TTSLVTPAVWAHA 28 (124)
T ss_pred HHHHhhhhhhhcc
Confidence 3334444443443
No 25
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=61.35 E-value=5.6 Score=32.24 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhhh
Q 032762 9 LGLLVSIVLLISS 21 (134)
Q Consensus 9 L~l~la~~LlvSS 21 (134)
|+++++.+|||.+
T Consensus 26 LIiiva~~lf~~~ 38 (217)
T PF07423_consen 26 LIIIVAYQLFFGG 38 (217)
T ss_pred HHHHHhhhheecC
Confidence 4444455555533
No 26
>PRK09125 DNA ligase; Provisional
Probab=60.75 E-value=3.9 Score=33.80 Aligned_cols=17 Identities=53% Similarity=0.708 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhHHHH
Q 032762 9 LGLLVSIVLLISSEAAA 25 (134)
Q Consensus 9 L~l~la~~LlvSSevaA 25 (134)
|+|+||++|+.||+-+|
T Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (282)
T PRK09125 10 LALLLALLLLASSANAA 26 (282)
T ss_pred HHHHHHHHHhccccccC
Confidence 56667666666665444
No 27
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=59.31 E-value=13 Score=31.65 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=15.7
Q ss_pred HHHHhhhHHHHHHHHHhcc
Q 032762 15 IVLLISSEAAARDLAETSN 33 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~ 33 (134)
+||.+.+.++|++++++++
T Consensus 238 aFV~F~~~e~A~~Ai~~ln 256 (346)
T TIGR01659 238 AFVRFNKREEAQEAISALN 256 (346)
T ss_pred EEEEECCHHHHHHHHHHhC
Confidence 4678888888999998877
No 28
>PRK13617 psbV cytochrome c-550; Provisional
Probab=58.15 E-value=7.1 Score=30.66 Aligned_cols=13 Identities=38% Similarity=0.302 Sum_probs=6.9
Q ss_pred hhhHHHHHHHHHh
Q 032762 19 ISSEAAARDLAET 31 (134)
Q Consensus 19 vSSevaArelaE~ 31 (134)
+++.+.|.++.|+
T Consensus 27 ~~~~A~A~~ld~~ 39 (170)
T PRK13617 27 ISSPAQAAQWDAE 39 (170)
T ss_pred ccchhhhhhcccc
Confidence 4555555555554
No 29
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=57.57 E-value=14 Score=22.13 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhh
Q 032762 7 LMLGLLVSIVLLISS 21 (134)
Q Consensus 7 llL~l~la~~LlvSS 21 (134)
+-|.|++.+.||+||
T Consensus 19 ~GLllifvl~vLFss 33 (37)
T PF02419_consen 19 WGLLLIFVLAVLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 334445555566765
No 30
>PRK15396 murein lipoprotein; Provisional
Probab=57.56 E-value=12 Score=25.73 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 032762 1 MGSKVFLMLGLLVSIVLLI 19 (134)
Q Consensus 1 M~sK~~llL~l~la~~Llv 19 (134)
|..|++|+.+++|+++||.
T Consensus 1 m~~~kl~l~av~ls~~LLa 19 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLA 19 (78)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 6666777777766665554
No 31
>TIGR02953 penta_MxKDx pentapeptide MXKDX repeat protein. Members of this protein family are small bacterial proteins, each with an N-terminal signal sequence followed by up to 11 imperfect repeats of a pentapeptide. The pentapeptide repeat usually follows the form Met-Xaa-Lys-Asp-Xaa.
Probab=56.27 E-value=12 Score=25.66 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 032762 7 LMLGLLVSIVLLISSEAAARD 27 (134)
Q Consensus 7 llL~l~la~~LlvSSevaAre 27 (134)
|+++|+.++|++++..+.|++
T Consensus 3 i~~a~~aaal~~~a~~A~a~D 23 (75)
T TIGR02953 3 IVAAISAAAFLSLAPAALAQD 23 (75)
T ss_pred HHHHHHHHHHHHHhHHhhhhh
Confidence 344444445555555555554
No 32
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=55.99 E-value=4.9 Score=30.00 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhH
Q 032762 4 KVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 4 K~~llL~l~la~~LlvSSe 22 (134)
|++||+++++...+-+|++
T Consensus 2 KK~ll~~~lllss~sfaA~ 20 (126)
T PF09403_consen 2 KKILLLGMLLLSSISFAAT 20 (126)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHHcc
Confidence 4555554444344444443
No 33
>PRK13620 psbV cytochrome c-550; Provisional
Probab=55.02 E-value=10 Score=30.80 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcc
Q 032762 10 GLLVSIVLLISSEAAARDLAETSN 33 (134)
Q Consensus 10 ~l~la~~LlvSSevaArelaE~~~ 33 (134)
+++|.+|.++++.+.|.++.|++-
T Consensus 63 ~~~~~~~~~~~~~a~A~~ld~~tr 86 (215)
T PRK13620 63 AALLAVFQFNLGAAQAAELTAETR 86 (215)
T ss_pred HHHHHHHHhccchhhHHHhhccce
Confidence 344444555566666777766543
No 34
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=54.79 E-value=6.1 Score=29.18 Aligned_cols=9 Identities=44% Similarity=0.449 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 032762 4 KVFLMLGLL 12 (134)
Q Consensus 4 K~~llL~l~ 12 (134)
|++|+++++
T Consensus 2 ~~~~~~~~~ 10 (162)
T PF12276_consen 2 KRRLLLALA 10 (162)
T ss_pred chHHHHHHH
Confidence 334444333
No 35
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=53.31 E-value=14 Score=28.52 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHHHHHHhhh
Q 032762 1 MGSKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSS 21 (134)
|||-+.--|++|+|++|..+|
T Consensus 1 mAs~a~SeLV~FIaalLiaas 21 (154)
T COG3354 1 MASVASSELVMFIAALLIAAS 21 (154)
T ss_pred CCccchhHHHHHHHHHHHHHH
Confidence 888776666676655444333
No 36
>PF06411 HdeA: HdeA/HdeB family; InterPro: IPR010486 HNS (histone-like nucleoid structuring)-dependent expression A (HdeA) protein is a stress response protein found in highly acid resistant bacteria such as Shigella flexneri and Escherichia coli, but which is lacking in mildly acid tolerant bacteria such as Salmonella []. HdeA is one of the most abundant proteins found in the periplasmic space of E. coli, where it is one of a network of proteins that confer an acid resistance phenotype essential for the pathogenesis of enteric bacteria []. HdeA is thought to act as a chaperone, functioning to prevent the aggregation of periplasmic proteins denatured under acidic conditions. The HNS protein, a chromatin-associated protein that influences the gene expression of several environmentally-induced target genes, represses the expression of HdeA. HdeB, which is encoded within the same operon, may form heterodimers with HdeA. HdeA is a single domain protein with an overall fold that is similar to the fold of the N-terminal subdomain of the GluRS anticodon-binding domain. ; PDB: 1BG8_C 1DJ8_C 2XUV_C.
Probab=52.78 E-value=4.6 Score=27.97 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhh
Q 032762 4 KVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 4 K~~llL~l~la~~LlvS 20 (134)
|++++++++|+++.+++
T Consensus 1 ~~~~~~~~~l~~~~~~~ 17 (94)
T PF06411_consen 1 KKLVLLILALALAALAS 17 (94)
T ss_dssp -----------------
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 55555555544444443
No 37
>PLN03207 stomagen; Provisional
Probab=52.16 E-value=13 Score=27.13 Aligned_cols=8 Identities=13% Similarity=0.015 Sum_probs=4.5
Q ss_pred CccCCCCc
Q 032762 113 GCRCCSYA 120 (134)
Q Consensus 113 c~rcc~~~ 120 (134)
|++=|+..
T Consensus 84 cr~kc~~e 91 (113)
T PLN03207 84 CRYKCRAE 91 (113)
T ss_pred ccccccce
Confidence 66556543
No 38
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=51.99 E-value=4.8 Score=28.88 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHh
Q 032762 4 KVFLMLGLLVSIVLLI 19 (134)
Q Consensus 4 K~~llL~l~la~~Llv 19 (134)
|+-+||++++|.||.+
T Consensus 2 KatIlLAv~vAViv~v 17 (98)
T PF10690_consen 2 KATILLAVVVAVIVGV 17 (98)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 7778888888776644
No 39
>PRK10772 cell division protein FtsL; Provisional
Probab=51.32 E-value=24 Score=25.71 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcc
Q 032762 8 MLGLLVSIVLLISSEAAARDLAETSN 33 (134)
Q Consensus 8 lL~l~la~~LlvSSevaArelaE~~~ 33 (134)
++++++.++.+|.+...+|.+..+.+
T Consensus 30 l~~vv~SAl~VV~~~h~tR~l~~ele 55 (108)
T PRK10772 30 FIAVIVSAVTVVTTAHHTRLLTAERE 55 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666667777766554
No 40
>PRK13618 psbV cytochrome c-550; Provisional
Probab=51.11 E-value=18 Score=28.12 Aligned_cols=13 Identities=31% Similarity=0.458 Sum_probs=6.5
Q ss_pred hHHHHHHHHHhcc
Q 032762 21 SEAAARDLAETSN 33 (134)
Q Consensus 21 SevaArelaE~~~ 33 (134)
+.+.|.++.|++.
T Consensus 22 ~~a~A~~~d~~t~ 34 (163)
T PRK13618 22 GSATAAELDEATR 34 (163)
T ss_pred cHHHHhhcccccc
Confidence 3444555555543
No 41
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=50.32 E-value=32 Score=24.20 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=10.6
Q ss_pred hhHHHH-HHHHHHHHHHhhhHH
Q 032762 3 SKVFLM-LGLLVSIVLLISSEA 23 (134)
Q Consensus 3 sK~~ll-L~l~la~~LlvSSev 23 (134)
.|+||+ |+.++++++.+.+.+
T Consensus 12 ~kkFl~~l~~vfiia~~Vv~rA 33 (85)
T PF10749_consen 12 GKKFLLALAIVFIIAATVVGRA 33 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 356665 444444445454443
No 42
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=48.94 E-value=11 Score=31.78 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=12.6
Q ss_pred CchhHHHHHHHHHHHHHHhhh
Q 032762 1 MGSKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSS 21 (134)
|||-+-|||+||++++++-.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (291)
T PLN03161 1 MASLKTLLVALFAALAAFDRS 21 (291)
T ss_pred ChhHHHHHHHHHHHHHhcCCC
Confidence 888655666666555554333
No 43
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=48.79 E-value=8.8 Score=31.96 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhHH
Q 032762 6 FLMLGLLVSIVLLISSEA 23 (134)
Q Consensus 6 ~llL~l~la~~LlvSSev 23 (134)
+++|+|.|++-+++|..+
T Consensus 15 lvvl~lsLvcsvivagaa 32 (264)
T COG2869 15 LVVLVLSLVCSVIVAGAA 32 (264)
T ss_pred hhHHHHHHHHHHHHhhhh
Confidence 444666655555665543
No 44
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=48.64 E-value=14 Score=25.76 Aligned_cols=18 Identities=22% Similarity=0.491 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 032762 3 SKVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 3 sK~~llL~l~la~~LlvS 20 (134)
||.|++++++|++-|++.
T Consensus 4 sKi~~f~~~Ll~in~~~p 21 (85)
T TIGR01495 4 SKILYFFAALLAINFIAP 21 (85)
T ss_pred hHHHHHHHHHHHHHhCcc
Confidence 788999988888866653
No 45
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.58 E-value=41 Score=22.12 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=4.6
Q ss_pred HHHHhhhHHHH
Q 032762 15 IVLLISSEAAA 25 (134)
Q Consensus 15 ~~LlvSSevaA 25 (134)
+|.++++....
T Consensus 16 ~~~~v~~~~~~ 26 (85)
T TIGR02209 16 AISVVSAQHQT 26 (85)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 46
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.50 E-value=8.7 Score=30.94 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=10.5
Q ss_pred CchhHHHHHHHHHHHHHHhh
Q 032762 1 MGSKVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvS 20 (134)
|--|.|+.+.|++++|+..+
T Consensus 2 ~m~k~l~~~~ll~~a~a~~~ 21 (202)
T COG2854 2 MMKKSLTILALLVIAFASSL 21 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33456666666555544333
No 47
>PRK15240 resistance to complement killing; Provisional
Probab=47.41 E-value=12 Score=29.20 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHh
Q 032762 4 KVFLMLGLLVSIVLLI 19 (134)
Q Consensus 4 K~~llL~l~la~~Llv 19 (134)
|+.|+++++++++++.
T Consensus 2 kk~~~~~~~~~~~~~~ 17 (185)
T PRK15240 2 KKIVLSSLLLSAAGLA 17 (185)
T ss_pred chhHHHHHHHHHHHhc
Confidence 4555544443333333
No 48
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=47.17 E-value=16 Score=23.47 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=5.4
Q ss_pred HHhhhHHHHHHH
Q 032762 17 LLISSEAAARDL 28 (134)
Q Consensus 17 LlvSSevaArel 28 (134)
||++--+.|+++
T Consensus 11 LLlAlqaQAepl 22 (52)
T PF00879_consen 11 LLLALQAQAEPL 22 (52)
T ss_pred HHHHHHHhcccc
Confidence 444444445544
No 49
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.47 E-value=14 Score=28.67 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHhhhHHH
Q 032762 4 KVFLMLGLLVSIVLLISSEAA 24 (134)
Q Consensus 4 K~~llL~l~la~~LlvSSeva 24 (134)
|.|+++.+|++++||.++-++
T Consensus 2 ~rf~~i~lL~~A~lls~plva 22 (166)
T COG3495 2 NRFTSITLLAAALLLSAPLVA 22 (166)
T ss_pred chhHHHHHHHHHHHhcchhhh
Confidence 456665554444344444333
No 50
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=45.30 E-value=33 Score=22.48 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhh
Q 032762 7 LMLGLLVSIVLLIS 20 (134)
Q Consensus 7 llL~l~la~~LlvS 20 (134)
|||+.+||+.|.-|
T Consensus 5 lLf~aiLalsla~s 18 (59)
T PF03823_consen 5 LLFAAILALSLARS 18 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344433333
No 51
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=45.01 E-value=20 Score=29.86 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHH
Q 032762 5 VFLMLGLLVSIVLLISSEAAAR 26 (134)
Q Consensus 5 ~~llL~l~la~~LlvSSevaAr 26 (134)
.|+|+.++|+.++++++.++++
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~ 25 (310)
T PF12048_consen 4 RFLLPLLFLSSILAAAAQAAAA 25 (310)
T ss_pred HHHHHHHHHHHHHHhhchhhcc
Confidence 3444445555555555555443
No 52
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=44.75 E-value=33 Score=28.08 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=9.2
Q ss_pred HHHHhhhHHHHHHHHH
Q 032762 15 IVLLISSEAAARDLAE 30 (134)
Q Consensus 15 ~~LlvSSevaArelaE 30 (134)
.||++|.-|.|..+..
T Consensus 145 T~LfLSTVVLANKVS~ 160 (227)
T PF05399_consen 145 TLLFLSTVVLANKVSS 160 (227)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666655543
No 53
>KOG4087 consensus Phospholipase A2 [Lipid transport and metabolism]
Probab=44.03 E-value=64 Score=24.76 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHhhh--HHHHHHHHHhcc
Q 032762 4 KVFLMLGLLVSIVLLISS--EAAARDLAETSN 33 (134)
Q Consensus 4 K~~llL~l~la~~LlvSS--evaArelaE~~~ 33 (134)
|.+|+|++|+...|+... -..-++++|.++
T Consensus 2 k~~~~la~l~~~~~~~~~g~l~~l~~Mi~~vt 33 (144)
T KOG4087|consen 2 KLLLLLAFLLPAVLLTAHGALLNLKKMIECVT 33 (144)
T ss_pred chhHHHHHHHHHHHhhcchHHHHHHHHHHHHc
Confidence 455556555444333321 122344555443
No 54
>COG5510 Predicted small secreted protein [Function unknown]
Probab=44.02 E-value=32 Score=21.39 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhh
Q 032762 9 LGLLVSIVLLIS 20 (134)
Q Consensus 9 L~l~la~~LlvS 20 (134)
++|+|++|||.+
T Consensus 10 ~~vll~s~llaa 21 (44)
T COG5510 10 ALVLLASTLLAA 21 (44)
T ss_pred HHHHHHHHHHHH
Confidence 444444555443
No 55
>PF12092 DUF3568: Protein of unknown function (DUF3568); InterPro: IPR021952 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 130 amino acids in length.
Probab=43.77 E-value=17 Score=27.18 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSIVL 17 (134)
Q Consensus 4 K~~llL~l~la~~L 17 (134)
|++|++.|++++.|
T Consensus 1 kkl~~~~l~~~~~l 14 (131)
T PF12092_consen 1 KKLLLIALFILSTL 14 (131)
T ss_pred CccHHHHHHHHHHH
Confidence 45555544433333
No 56
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=42.94 E-value=20 Score=27.53 Aligned_cols=10 Identities=40% Similarity=0.218 Sum_probs=3.9
Q ss_pred HHHHHhhhHH
Q 032762 14 SIVLLISSEA 23 (134)
Q Consensus 14 a~~LlvSSev 23 (134)
+++|+++..+
T Consensus 12 ~~ll~~~~~a 21 (180)
T PRK10894 12 SSLLAASIPA 21 (180)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 57
>PHA03255 BDLF3; Provisional
Probab=42.36 E-value=21 Score=28.70 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHh
Q 032762 6 FLMLGLLVSIVLLI 19 (134)
Q Consensus 6 ~llL~l~la~~Llv 19 (134)
||+|+|+||+=++|
T Consensus 194 flmlilifaagimm 207 (234)
T PHA03255 194 FLMLILIFAAGLMM 207 (234)
T ss_pred HHHHHHHHHhhHhh
Confidence 33344444443333
No 58
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=41.89 E-value=40 Score=22.63 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhh
Q 032762 8 MLGLLVSIVLLISS 21 (134)
Q Consensus 8 lL~l~la~~LlvSS 21 (134)
.+.++||++|||+-
T Consensus 4 iiSIvLai~lLI~l 17 (66)
T PF07438_consen 4 IISIVLAIALLISL 17 (66)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444555555443
No 59
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=41.61 E-value=34 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHh
Q 032762 9 LGLLVSIVLLISSEAAARDLAET 31 (134)
Q Consensus 9 L~l~la~~LlvSSevaArelaE~ 31 (134)
.+++++++++++..+.|.|+-..
T Consensus 39 ~av~~l~~~~~~~~A~A~DLlA~ 61 (119)
T PF05513_consen 39 VAVLALFFLALAHPAHATDLLAS 61 (119)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhc
Confidence 34443344455555556665443
No 60
>PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [].; PDB: 3F1Z_I.
Probab=41.24 E-value=10 Score=27.31 Aligned_cols=9 Identities=33% Similarity=0.479 Sum_probs=0.0
Q ss_pred Cc-hhHHHHH
Q 032762 1 MG-SKVFLML 9 (134)
Q Consensus 1 M~-sK~~llL 9 (134)
|- .|++|++
T Consensus 1 M~~~kk~l~~ 10 (144)
T PF12869_consen 1 MKILKKILII 10 (144)
T ss_dssp ----------
T ss_pred CchhhhHHHH
Confidence 54 4555443
No 61
>PRK09810 entericidin A; Provisional
Probab=41.23 E-value=33 Score=20.96 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 032762 4 KVFLMLGL 11 (134)
Q Consensus 4 K~~llL~l 11 (134)
|++++|++
T Consensus 3 kk~~~l~~ 10 (41)
T PRK09810 3 KRLIVLVL 10 (41)
T ss_pred HHHHHHHH
Confidence 45444443
No 62
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=41.16 E-value=47 Score=24.30 Aligned_cols=20 Identities=15% Similarity=0.579 Sum_probs=11.4
Q ss_pred CchhHHHHHHHHHHHHHHhh
Q 032762 1 MGSKVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvS 20 (134)
|.--.+|+|+++|++|.|+.
T Consensus 1 ~~~~~il~~vv~~~i~yf~i 20 (113)
T PRK06531 1 MGIPTIIMFVVMLGLIFFMQ 20 (113)
T ss_pred CchHHHHHHHHHHHHHHhee
Confidence 44444555666666666554
No 63
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=41.11 E-value=18 Score=31.60 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=14.4
Q ss_pred CchhHHHHHHHHHHHHHHhhh
Q 032762 1 MGSKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSS 21 (134)
|=.|++|++..||++.++..+
T Consensus 1 ~~~k~~li~~~ll~~~~~~~~ 21 (383)
T PF12097_consen 1 MFKKTCLILSFLLAISILAFF 21 (383)
T ss_pred CcccchhhHHHHHHHHHHHhc
Confidence 667888888777766555433
No 64
>PRK10260 L,D-transpeptidase; Provisional
Probab=41.07 E-value=18 Score=30.84 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=14.9
Q ss_pred CchhHHHHHHHHHHHHHHhhhHHHH
Q 032762 1 MGSKVFLMLGLLVSIVLLISSEAAA 25 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSSevaA 25 (134)
|-.|.++++.|+|++ +++++.+.|
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~A 24 (306)
T PRK10260 1 MNMKLKTLFAAAFAV-VGFCSTASA 24 (306)
T ss_pred CcchhhHHHHHHHHH-HHhccchhh
Confidence 777887777777744 445444443
No 65
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=41.04 E-value=8.6 Score=29.05 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhh
Q 032762 7 LMLGLLVSIVLLISS 21 (134)
Q Consensus 7 llL~l~la~~LlvSS 21 (134)
|||+|+|++++.+++
T Consensus 3 ill~l~lt~~~~~~~ 17 (136)
T PF04885_consen 3 ILLVLVLTLITISSS 17 (136)
T ss_pred eHHHHHHHHHHHhcc
Confidence 344444444333333
No 66
>PF12477 TraW_N: Sex factor F TraW protein N terminal
Probab=40.98 E-value=15 Score=21.08 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=6.2
Q ss_pred HHHHhhhHHHHHH
Q 032762 15 IVLLISSEAAARD 27 (134)
Q Consensus 15 ~~LlvSSevaAre 27 (134)
++++++..+.|++
T Consensus 8 ~~~~~~~~a~Akd 20 (31)
T PF12477_consen 8 ALLLLSPSAHAKD 20 (31)
T ss_pred HHHHcCcccchhh
Confidence 3445554444444
No 67
>PRK10318 hypothetical protein; Provisional
Probab=40.59 E-value=31 Score=25.75 Aligned_cols=11 Identities=27% Similarity=0.543 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 032762 7 LMLGLLVSIVL 17 (134)
Q Consensus 7 llL~l~la~~L 17 (134)
+|+.|||+..+
T Consensus 6 ~l~~lL~~~~~ 16 (121)
T PRK10318 6 LLITLLFTLPA 16 (121)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 68
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=40.00 E-value=38 Score=26.67 Aligned_cols=6 Identities=0% Similarity=-0.169 Sum_probs=2.3
Q ss_pred HHHHHH
Q 032762 6 FLMLGL 11 (134)
Q Consensus 6 ~llL~l 11 (134)
+++|+|
T Consensus 5 ~~~~~l 10 (204)
T TIGR00547 5 AIKCAA 10 (204)
T ss_pred HHHHHH
Confidence 333433
No 69
>PRK09455 rseB anti-sigma E factor; Provisional
Probab=39.80 E-value=15 Score=31.11 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHhhhHHH
Q 032762 4 KVFLMLGLLVSIVLLISSEAA 24 (134)
Q Consensus 4 K~~llL~l~la~~LlvSSeva 24 (134)
|++++++++|++.|++++.++
T Consensus 2 ~~~~~~~~~l~~~l~~~~~~~ 22 (319)
T PRK09455 2 KQLWFAVSLLTGSLLFSANAS 22 (319)
T ss_pred chHHHHHHHHHHhhccccccc
Confidence 566665555555555555444
No 70
>PLN00212 glutelin; Provisional
Probab=39.77 E-value=28 Score=31.50 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=10.9
Q ss_pred CchhHHHHHHHHHHHHHHhhh
Q 032762 1 MGSKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSS 21 (134)
|+|+++|| .|.|+++||+.+
T Consensus 1 ~~~~~~~l-~~~~~~l~l~~~ 20 (493)
T PLN00212 1 ASSAFSRL-SICFCVLLLCHG 20 (493)
T ss_pred CcchHHHH-HHHHHHHHHHhh
Confidence 77766554 334445555544
No 71
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=39.73 E-value=19 Score=29.17 Aligned_cols=21 Identities=29% Similarity=0.282 Sum_probs=15.1
Q ss_pred chhHHHHHHHHHHHHHHhhhH
Q 032762 2 GSKVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 2 ~sK~~llL~l~la~~LlvSSe 22 (134)
-+|++++|.+.+|+|||.+..
T Consensus 3 ~~~~~~~~l~~~As~LL~aC~ 23 (206)
T COG3017 3 MMKRLLFLLLALASLLLTACT 23 (206)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 367777777777888887663
No 72
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=39.57 E-value=35 Score=22.17 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSIVLL 18 (134)
Q Consensus 4 K~~llL~l~la~~Ll 18 (134)
|+||+|+++|.=+|.
T Consensus 19 ~~flfl~~~l~PiL~ 33 (56)
T PF06796_consen 19 KAFLFLAVVLFPILA 33 (56)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666555444443
No 73
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=39.36 E-value=25 Score=26.90 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSIVLL 18 (134)
Q Consensus 4 K~~llL~l~la~~Ll 18 (134)
|-|++|+|||.+|+.
T Consensus 2 Kll~~lilli~~~~~ 16 (212)
T PF11912_consen 2 KLLISLILLILLIIN 16 (212)
T ss_pred cHHHHHHHHHHHHHh
Confidence 544444444333333
No 74
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=38.42 E-value=19 Score=26.63 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=4.4
Q ss_pred chhHHHHHH
Q 032762 2 GSKVFLMLG 10 (134)
Q Consensus 2 ~sK~~llL~ 10 (134)
-||++|++.
T Consensus 1 ~~~~~~~~~ 9 (125)
T PLN03024 1 MSKRILIFS 9 (125)
T ss_pred CceeeHHHH
Confidence 066655443
No 75
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=38.39 E-value=36 Score=20.56 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=5.5
Q ss_pred HHHHHHHHhhh
Q 032762 11 LLVSIVLLISS 21 (134)
Q Consensus 11 l~la~~LlvSS 21 (134)
|++++.|++||
T Consensus 25 lifvl~vLFss 35 (39)
T PRK00753 25 LVFVLGILFSS 35 (39)
T ss_pred HHHHHHHHHHh
Confidence 33344556664
No 76
>PF12930 DUF3836: Family of unknown function (DUF3836); InterPro: IPR024339 This entry represents a family of bacterial proteins of unknown function.; PDB: 3MSW_A.
Probab=37.96 E-value=9.2 Score=28.55 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSI 15 (134)
Q Consensus 4 K~~llL~l~la~ 15 (134)
|+++|++++|++
T Consensus 8 K~~v~~av~~~s 19 (132)
T PF12930_consen 8 KALVLSAVVAVS 19 (132)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
No 77
>PF14060 DUF4252: Domain of unknown function (DUF4252)
Probab=37.52 E-value=54 Score=23.84 Aligned_cols=8 Identities=25% Similarity=0.438 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q 032762 4 KVFLMLGL 11 (134)
Q Consensus 4 K~~llL~l 11 (134)
|++|++.+
T Consensus 1 Kk~i~~l~ 8 (155)
T PF14060_consen 1 KKIILILL 8 (155)
T ss_pred ChhHHHHH
Confidence 45444433
No 78
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=36.90 E-value=31 Score=26.67 Aligned_cols=14 Identities=7% Similarity=0.408 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHH
Q 032762 3 SKVFLMLGLLVSIV 16 (134)
Q Consensus 3 sK~~llL~l~la~~ 16 (134)
.|+|+|++++++++
T Consensus 4 ~kkl~~~~v~~~l~ 17 (170)
T PRK12750 4 AKKLVLAAVVLPLT 17 (170)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666665554443
No 79
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=36.72 E-value=74 Score=20.43 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhH
Q 032762 6 FLMLGLLVSIVLLISSE 22 (134)
Q Consensus 6 ~llL~l~la~~LlvSSe 22 (134)
|++++++|+++.++-+.
T Consensus 7 ~vi~gI~~S~ym~v~t~ 23 (52)
T PF14147_consen 7 FVIAGIIFSGYMAVKTA 23 (52)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666666543
No 80
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.65 E-value=23 Score=31.32 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=12.2
Q ss_pred chhHHHHH-HHHHHHHHHhh
Q 032762 2 GSKVFLML-GLLVSIVLLIS 20 (134)
Q Consensus 2 ~sK~~llL-~l~la~~LlvS 20 (134)
.|||++.+ +||||++|+++
T Consensus 6 ns~W~irIiaff~A~~Lfl~ 25 (403)
T COG4856 6 NSPWLIRIIAFFFAILLFLY 25 (403)
T ss_pred cCcHhHHHHHHHHHHHhhee
Confidence 36777665 57777766554
No 81
>PRK15307 major fimbrial protein StkA; Provisional
Probab=36.44 E-value=30 Score=26.91 Aligned_cols=15 Identities=13% Similarity=0.002 Sum_probs=8.4
Q ss_pred CchhHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSI 15 (134)
Q Consensus 1 M~sK~~llL~l~la~ 15 (134)
|-.|+++|+++++++
T Consensus 1 m~~~~~~l~~~~~~~ 15 (201)
T PRK15307 1 MFLKKYGLAAAVAMT 15 (201)
T ss_pred CchHHHHHHHHHHHH
Confidence 766766655554433
No 82
>PRK10780 periplasmic chaperone; Provisional
Probab=35.94 E-value=43 Score=25.22 Aligned_cols=6 Identities=33% Similarity=0.595 Sum_probs=3.0
Q ss_pred hHHHHH
Q 032762 4 KVFLML 9 (134)
Q Consensus 4 K~~llL 9 (134)
|+||++
T Consensus 2 kk~~~~ 7 (165)
T PRK10780 2 KKWLLA 7 (165)
T ss_pred hHHHHH
Confidence 555543
No 83
>PLN00213 predicted protein; Provisional
Probab=35.81 E-value=29 Score=25.80 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 032762 1 MGSKVFLMLGLLVSIVLLI 19 (134)
Q Consensus 1 M~sK~~llL~l~la~~Llv 19 (134)
|.-|..++|.+++.++|.|
T Consensus 1 m~iknV~~ll~v~cIvvsV 19 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSV 19 (118)
T ss_pred CchHHHHHHHHHHHHHhee
Confidence 7778877766655554443
No 84
>PRK13881 conjugal transfer protein TrbI; Provisional
Probab=35.72 E-value=50 Score=29.86 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=9.3
Q ss_pred HHHHHHhhhHHHHHHHHHhc
Q 032762 13 VSIVLLISSEAAARDLAETS 32 (134)
Q Consensus 13 la~~LlvSSevaArelaE~~ 32 (134)
|.+|||+..-|+|+.++++.
T Consensus 38 ~~~f~~~~~~va~~r~~~~~ 57 (472)
T PRK13881 38 LLSFVLVMALVAADRAAKQN 57 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 33444444445555444443
No 85
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=35.60 E-value=75 Score=18.92 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhc
Q 032762 8 MLGLLVSIVLLISSEAAARDLAETS 32 (134)
Q Consensus 8 lL~l~la~~LlvSSevaArelaE~~ 32 (134)
+|.++||.++-|..+. .-|..|..
T Consensus 7 iLG~lLAcAFgiinAl-wlEh~e~~ 30 (37)
T COG4890 7 ILGLLLACAFGIINAL-WLEHMEDR 30 (37)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4677777766665433 34444443
No 86
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=35.54 E-value=46 Score=20.94 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSIVL 17 (134)
Q Consensus 4 K~~llL~l~la~~L 17 (134)
|+|++|+++|.=+|
T Consensus 11 ~~flfl~v~l~PiL 24 (47)
T TIGR02972 11 KALGFIIVVLFPIL 24 (47)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666665544433
No 87
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=35.44 E-value=93 Score=23.18 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=9.9
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 032762 12 LVSIVLLISSEAAARDLA 29 (134)
Q Consensus 12 ~la~~LlvSSevaArela 29 (134)
++.+|+++.+.+++.-++
T Consensus 80 li~~FlllT~Pvaah~ia 97 (126)
T PRK12592 80 LLVLFALLTSPVTAQRVG 97 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566677666654333
No 88
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=35.31 E-value=87 Score=21.18 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 032762 6 FLMLGLLVSIVLLISS 21 (134)
Q Consensus 6 ~llL~l~la~~LlvSS 21 (134)
||+|++++++|.+++.
T Consensus 5 li~lv~~~~i~yf~~~ 20 (82)
T PF02699_consen 5 LIPLVIIFVIFYFLMI 20 (82)
T ss_dssp HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhhhee
Confidence 4445555555555444
No 89
>COG4313 Protein involved in meta-pathway of phenol degradation [Energy production and conversion]
Probab=35.30 E-value=28 Score=29.70 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=7.2
Q ss_pred CchhHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSI 15 (134)
Q Consensus 1 M~sK~~llL~l~la~ 15 (134)
|++|.+..+++++|+
T Consensus 4 ~~~~lla~~~~~~aa 18 (304)
T COG4313 4 MRSKLLAALVVLLAA 18 (304)
T ss_pred chhhHHHHHHHHHHH
Confidence 566654444443333
No 90
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=34.96 E-value=37 Score=27.74 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=6.7
Q ss_pred Cchh--HHHHHHHH
Q 032762 1 MGSK--VFLMLGLL 12 (134)
Q Consensus 1 M~sK--~~llL~l~ 12 (134)
|++| ++++|.++
T Consensus 1 ~~~~~~~~~~~~~~ 14 (271)
T PRK11063 1 MAFKFKTFAAVGAL 14 (271)
T ss_pred CcchHHHHHHHHHH
Confidence 7775 55554443
No 91
>PRK13893 conjugal transfer protein TrbM; Provisional
Probab=34.67 E-value=24 Score=28.29 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=6.7
Q ss_pred CchhHHHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIVL 17 (134)
Q Consensus 1 M~sK~~llL~l~la~~L 17 (134)
|-+| +|.|++++++++
T Consensus 1 m~k~-~~~~~~~~~a~~ 16 (193)
T PRK13893 1 MKKK-LLALAALVAALG 16 (193)
T ss_pred Cchh-HHHHHHHHHHHh
Confidence 5444 444444333333
No 92
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=34.51 E-value=8.3 Score=31.79 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=26.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCccC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYN 54 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~g 54 (134)
+||.|-....|+++.|+++ .. +++++.+.|+.++|+
T Consensus 58 aFVrf~~k~daedA~damD-G~---~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 58 AFVRFHDKRDAEDALDAMD-GA---VLDGRELRVQMARYG 93 (256)
T ss_pred eEEEeeecchHHHHHHhhc-ce---eeccceeeehhhhcC
Confidence 3455555566788888877 33 789999999999983
No 93
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=34.20 E-value=38 Score=24.29 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSIVLL 18 (134)
Q Consensus 4 K~~llL~l~la~~Ll 18 (134)
|+||+.+|+++++|+
T Consensus 2 ~k~l~sal~~~~~L~ 16 (96)
T PF11839_consen 2 KKLLLSALALAALLL 16 (96)
T ss_pred chHHHHHHHHHHHHH
Confidence 667776676665554
No 94
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=34.18 E-value=36 Score=23.54 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=13.5
Q ss_pred CchhHHHHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIVLL 18 (134)
Q Consensus 1 M~sK~~llL~l~la~~Ll 18 (134)
|.+++|+|.+++|..+||
T Consensus 1 m~~~~m~l~Avvlg~lll 18 (78)
T COG4238 1 MKTTKMTLGAVVLGSLLL 18 (78)
T ss_pred CCcchhhHHHHHHHHHHH
Confidence 677878887777777665
No 95
>PRK10641 btuB vitamin B12/cobalamin outer membrane transporter; Provisional
Probab=33.95 E-value=10 Score=33.34 Aligned_cols=16 Identities=31% Similarity=0.262 Sum_probs=9.6
Q ss_pred CchhHHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIV 16 (134)
Q Consensus 1 M~sK~~llL~l~la~~ 16 (134)
|-.|++|+++|+|+++
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (614)
T PRK10641 1 MIKKASLLTALSVTAF 16 (614)
T ss_pred CcchHHHHHHHHhccc
Confidence 7778766665544443
No 96
>PF11162 DUF2946: Protein of unknown function (DUF2946); InterPro: IPR021333 This family of proteins has no known function.
Probab=33.93 E-value=56 Score=21.46 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 032762 5 VFLMLGLLVSIV 16 (134)
Q Consensus 5 ~~llL~l~la~~ 16 (134)
++.+|+++|.+|
T Consensus 3 ~l~l~a~ll~~l 14 (122)
T PF11162_consen 3 WLALLAVLLQVL 14 (122)
T ss_pred HHHHHHHHHHHH
Confidence 344555544443
No 97
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=33.74 E-value=53 Score=20.20 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHh
Q 032762 4 KVFLMLGLLVSIVLLI 19 (134)
Q Consensus 4 K~~llL~l~la~~Llv 19 (134)
|+|++|+++|.=+|.+
T Consensus 6 ~~flfl~~~l~PiLsV 21 (42)
T TIGR02973 6 NTFLFLAAVIWPVLSV 21 (42)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777776655444433
No 98
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=33.73 E-value=20 Score=26.95 Aligned_cols=18 Identities=11% Similarity=0.312 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhhHH
Q 032762 6 FLMLGLLVSIVLLISSEA 23 (134)
Q Consensus 6 ~llL~l~la~~LlvSSev 23 (134)
||++++.||+|.+|.++.
T Consensus 10 lLi~vIglAL~aFIv~d~ 27 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDF 27 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555556655555543
No 99
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=33.73 E-value=31 Score=24.59 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=9.0
Q ss_pred CchhHHHHHHHHHHHHHHhhh
Q 032762 1 MGSKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSS 21 (134)
|+. ++++|.| ||+.|.|+-
T Consensus 1 MaR-RlwiLsl-LAVtLtVAL 19 (100)
T PF05984_consen 1 MAR-RLWILSL-LAVTLTVAL 19 (100)
T ss_pred Cch-hhHHHHH-HHHHHHHHh
Confidence 654 4444444 344455543
No 100
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=33.54 E-value=47 Score=23.35 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=8.9
Q ss_pred CchhHHHH-HHHHHHHHHHhh
Q 032762 1 MGSKVFLM-LGLLVSIVLLIS 20 (134)
Q Consensus 1 M~sK~~ll-L~l~la~~LlvS 20 (134)
|++=+-|+ +.|+||+.|+++
T Consensus 1 m~gvvNL~Dv~LVfav~llva 21 (92)
T PF09919_consen 1 MSGVVNLFDVMLVFAVGLLVA 21 (92)
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 44433333 445555544443
No 101
>PRK03577 acid shock protein precursor; Provisional
Probab=33.48 E-value=37 Score=24.59 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhhhHH
Q 032762 8 MLGLLVSIVLLISSEA 23 (134)
Q Consensus 8 lL~l~la~~LlvSSev 23 (134)
||+|+++.+|-|||-+
T Consensus 4 VLAlvVAa~~glSs~A 19 (102)
T PRK03577 4 VLALVVAAAMGLSSAA 19 (102)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 3444445555555543
No 102
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=32.97 E-value=49 Score=23.78 Aligned_cols=9 Identities=22% Similarity=0.848 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 032762 10 GLLVSIVLL 18 (134)
Q Consensus 10 ~l~la~~Ll 18 (134)
++++++.|+
T Consensus 13 ~~i~~l~li 21 (97)
T COG1930 13 GIILALPLI 21 (97)
T ss_pred HHHHHHHHH
Confidence 334444333
No 103
>PRK06193 hypothetical protein; Provisional
Probab=32.79 E-value=19 Score=28.76 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=5.9
Q ss_pred CchhHHHHH
Q 032762 1 MGSKVFLML 9 (134)
Q Consensus 1 M~sK~~llL 9 (134)
|+.+++.++
T Consensus 1 ~~~~~~~~~ 9 (206)
T PRK06193 1 MARRAMALL 9 (206)
T ss_pred CcchHHHHH
Confidence 777776554
No 104
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=32.54 E-value=38 Score=23.24 Aligned_cols=17 Identities=47% Similarity=0.745 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHh
Q 032762 3 SKVFLMLGLLVSIVLLI 19 (134)
Q Consensus 3 sK~~llL~l~la~~Llv 19 (134)
+|.|++++++|++-|+.
T Consensus 4 ~kv~~ff~~Ll~i~~l~ 20 (84)
T PF09716_consen 4 SKVFYFFAFLLAINLLT 20 (84)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 67888888887775553
No 105
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=32.39 E-value=46 Score=22.02 Aligned_cols=15 Identities=40% Similarity=0.764 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhh
Q 032762 6 FLMLGLLVSIVLLIS 20 (134)
Q Consensus 6 ~llL~l~la~~LlvS 20 (134)
|+||.|++.+++++|
T Consensus 14 fvllllf~iliilis 28 (68)
T MTH00261 14 FVLLLLFFILIILIS 28 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 106
>PF14208 DUF4320: Domain of unknown function (DUF4320)
Probab=32.35 E-value=71 Score=23.30 Aligned_cols=21 Identities=14% Similarity=0.358 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHH
Q 032762 7 LMLGLLVSIVLLISSEAAARD 27 (134)
Q Consensus 7 llL~l~la~~LlvSSevaAre 27 (134)
+||+|.+.+|..++.-..+.+
T Consensus 7 ~~ial~v~v~~~~i~~~ql~~ 27 (116)
T PF14208_consen 7 FLIALIVSVFPVFIQKQQLNT 27 (116)
T ss_pred HHHHHHHHHHhhhhhHHHHHH
Confidence 344444444444443333333
No 107
>COG4744 Uncharacterized conserved protein [Function unknown]
Probab=32.29 E-value=46 Score=24.75 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 032762 9 LGLLVSI 15 (134)
Q Consensus 9 L~l~la~ 15 (134)
++|+|+.
T Consensus 31 aamVfsv 37 (121)
T COG4744 31 AAMVFSV 37 (121)
T ss_pred HHHHHHH
Confidence 3333333
No 108
>COG3116 FtsL Cell division protein [Cell division and chromosome partitioning]
Probab=32.23 E-value=77 Score=23.13 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHh
Q 032762 10 GLLVSIVLLISSEAAARDLAET 31 (134)
Q Consensus 10 ~l~la~~LlvSSevaArelaE~ 31 (134)
++++.++.++-+....|.++.+
T Consensus 30 ~ivlsAi~vv~~tH~tRqL~~e 51 (105)
T COG3116 30 AIVLSAIGVVYTTHHTRQLIAE 51 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444556665544
No 109
>COG2834 LolA Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane]
Probab=32.12 E-value=52 Score=25.70 Aligned_cols=7 Identities=57% Similarity=0.605 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 032762 24 AARDLAE 30 (134)
Q Consensus 24 aArelaE 30 (134)
+|+++.|
T Consensus 28 ~~~~l~~ 34 (211)
T COG2834 28 AASQLKE 34 (211)
T ss_pred HHHHHHH
Confidence 3344444
No 110
>CHL00038 psbL photosystem II protein L
Probab=32.09 E-value=53 Score=19.75 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=4.7
Q ss_pred HHHHHHHhhh
Q 032762 12 LVSIVLLISS 21 (134)
Q Consensus 12 ~la~~LlvSS 21 (134)
++++.+++||
T Consensus 25 ifvl~vlfss 34 (38)
T CHL00038 25 IFVLAVLFSN 34 (38)
T ss_pred HHHHHHHHHH
Confidence 3334455554
No 111
>TIGR02830 spore_III_AG stage III sporulation protein AG. CC A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AG.
Probab=32.08 E-value=40 Score=26.68 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHhh
Q 032762 7 LMLGLLVSIVLLIS 20 (134)
Q Consensus 7 llL~l~la~~LlvS 20 (134)
|+|++++.++|+|.
T Consensus 6 l~il~l~GvlLli~ 19 (186)
T TIGR02830 6 LLVLLLIGLLLLIV 19 (186)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333334444443
No 112
>COG3745 CpaB Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]
Probab=32.01 E-value=42 Score=28.31 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=11.7
Q ss_pred CchhHHHHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIVLL 18 (134)
Q Consensus 1 M~sK~~llL~l~la~~Ll 18 (134)
|-+|.+++|++++++|.+
T Consensus 1 M~~~rliil~~~~~~ag~ 18 (276)
T COG3745 1 MRPKRLIILIVALAAAGL 18 (276)
T ss_pred CCchhHHHHHHHHHHHHH
Confidence 888987666555555443
No 113
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=31.94 E-value=54 Score=25.38 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=6.6
Q ss_pred CchhHHHHHHHH
Q 032762 1 MGSKVFLMLGLL 12 (134)
Q Consensus 1 M~sK~~llL~l~ 12 (134)
|-.|+++++.++
T Consensus 1 ~~~~~~~~~~~~ 12 (176)
T PRK13838 1 MRRRRALLLLAV 12 (176)
T ss_pred CCcchHHHHHHH
Confidence 556666554443
No 114
>PRK15137 DNA-specific endonuclease I; Provisional
Probab=31.91 E-value=28 Score=28.68 Aligned_cols=11 Identities=18% Similarity=0.048 Sum_probs=5.3
Q ss_pred CchhHHHHHHH
Q 032762 1 MGSKVFLMLGL 11 (134)
Q Consensus 1 M~sK~~llL~l 11 (134)
|-.|.||+|+|
T Consensus 1 ~~~~~~~~~~~ 11 (235)
T PRK15137 1 MYRNLSIAAVL 11 (235)
T ss_pred CchhHHHHHHH
Confidence 64555544443
No 115
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=31.16 E-value=38 Score=31.23 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=8.6
Q ss_pred CchhHHHHHHHH
Q 032762 1 MGSKVFLMLGLL 12 (134)
Q Consensus 1 M~sK~~llL~l~ 12 (134)
||.|++|+++|+
T Consensus 1 ~~~~~~~~~~~~ 12 (803)
T PRK11067 1 MAMKKLLIASLL 12 (803)
T ss_pred CcHHHHHHHHHH
Confidence 889987665554
No 116
>PRK13680 hypothetical protein; Provisional
Probab=30.35 E-value=41 Score=24.97 Aligned_cols=15 Identities=27% Similarity=0.149 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHh
Q 032762 5 VFLMLGLLVSIVLLI 19 (134)
Q Consensus 5 ~~llL~l~la~~Llv 19 (134)
.||+++|++++.+++
T Consensus 5 ~l~~~~~l~~~~~~~ 19 (117)
T PRK13680 5 ALLGLLLLSACGSVF 19 (117)
T ss_pred hhHHHHHHHHHHhHh
Confidence 344444444444444
No 117
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=30.26 E-value=79 Score=23.01 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhh
Q 032762 6 FLMLGLLVSIVLLISS 21 (134)
Q Consensus 6 ~llL~l~la~~LlvSS 21 (134)
||+|+++|++|.++..
T Consensus 7 ll~lv~i~~i~yF~~i 22 (109)
T PRK05886 7 FLPFLLIMGGFMYFAS 22 (109)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4444555555443333
No 118
>TIGR03656 IsdC heme uptake protein IsdC. Isd proteins are iron-regulated surface proteins found in Bacillus, Staphylococcus and Listeria species and are responsible for heme scavenging from hemoproteins. The IsdC protein consists of an N-terminal hydrophobic signal sequence, a central NEAT (NEAr Transporter, pfam05031) domain which confers the ability to bind heme and a C-terminal SrtB processing signal which targets the protein to the cell wall. IsdC is believed to make a direct contact with, and transfer heme to, the heme-binding component (IsdE) of an ABC transporter in the cytoplasmic membrane, and to receive heme from other NEAT-containing heme-binding proteins also localized in the cell wall.
Probab=29.86 E-value=29 Score=28.30 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=9.1
Q ss_pred hHHHHHHHHH--HHHHHhhhHHH
Q 032762 4 KVFLMLGLLV--SIVLLISSEAA 24 (134)
Q Consensus 4 K~~llL~l~l--a~~LlvSSeva 24 (134)
|.+|+|++|+ ++|+++++.++
T Consensus 2 k~~~~~~~~~~~~~f~~~~~~~~ 24 (217)
T TIGR03656 2 KKILVFAFFTTILAFIILSAGFS 24 (217)
T ss_pred cchhhHHHHHHHHHHhccccccc
Confidence 4555543333 33444444443
No 119
>PRK11566 hdeB acid-resistance protein; Provisional
Probab=28.63 E-value=47 Score=24.12 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHhh
Q 032762 4 KVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 4 K~~llL~l~la~~LlvS 20 (134)
|.+++++++.++.+..+
T Consensus 2 ~~~~~~~~~~~~~~~~a 18 (102)
T PRK11566 2 KAFIFMAAVTALSLVNA 18 (102)
T ss_pred chhHHHHHHHHHHHHhh
Confidence 44555444444433333
No 120
>PF12555 TPPK_C: Thiamine pyrophosphokinase C terminal; InterPro: IPR022215 This domain family is found in bacteria, and is approximately 50 amino acids in length. The proteins in this family catalyses the pyrophosphorylation of thiamine in yeast and synthesizes thiamine pyrophosphate (TPP), a thiamine coenzyme.
Probab=28.58 E-value=80 Score=19.78 Aligned_cols=8 Identities=38% Similarity=0.625 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 032762 9 LGLLVSIV 16 (134)
Q Consensus 9 L~l~la~~ 16 (134)
|+.+++++
T Consensus 21 laaLvav~ 28 (53)
T PF12555_consen 21 LAALVAVA 28 (53)
T ss_pred HHHHHHHH
Confidence 44444443
No 121
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=28.43 E-value=16 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 032762 5 VFLMLGLLVSIVLLISS 21 (134)
Q Consensus 5 ~~llL~l~la~~LlvSS 21 (134)
++++++++++++||.+.
T Consensus 3 Ki~~~~i~~~~~~L~aC 19 (46)
T PF02402_consen 3 KIIFIGIFLLTMLLAAC 19 (46)
T ss_pred EEEEeHHHHHHHHHHHh
Confidence 33343444334444433
No 122
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=28.30 E-value=3.1e+02 Score=22.76 Aligned_cols=6 Identities=0% Similarity=0.041 Sum_probs=2.4
Q ss_pred HHHhcc
Q 032762 28 LAETSN 33 (134)
Q Consensus 28 laE~~~ 33 (134)
+.++++
T Consensus 156 VLsAMq 161 (238)
T PF02084_consen 156 VLSAMQ 161 (238)
T ss_pred HHHHHh
Confidence 333444
No 123
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=28.30 E-value=83 Score=17.45 Aligned_cols=13 Identities=31% Similarity=0.381 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 032762 5 VFLMLGLLVSIVL 17 (134)
Q Consensus 5 ~~llL~l~la~~L 17 (134)
+++||++.|++++
T Consensus 7 T~~Ll~~~l~~l~ 19 (26)
T TIGR03778 7 TLALLGLGLLGLL 19 (26)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555444443
No 124
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=28.18 E-value=29 Score=27.05 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHH
Q 032762 4 KVFLMLGLLVSIVLLISSEAAARD 27 (134)
Q Consensus 4 K~~llL~l~la~~LlvSSevaAre 27 (134)
|+++|++++ +++++|..+.|.+
T Consensus 2 ~k~~~a~~~--~l~~~s~~a~A~~ 23 (180)
T PF07437_consen 2 KKFLLASAA--ALLLVSASANAIS 23 (180)
T ss_pred chHHHHHHH--HHHHHhhhhheee
Confidence 566654432 3344444444443
No 125
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=28.08 E-value=56 Score=21.44 Aligned_cols=10 Identities=40% Similarity=0.550 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 032762 7 LMLGLLVSIV 16 (134)
Q Consensus 7 llL~l~la~~ 16 (134)
+||+|+++++
T Consensus 16 ~lLiliis~~ 25 (61)
T PF06692_consen 16 PLLILIISFV 25 (61)
T ss_pred HHHHHHHHHH
Confidence 3444544443
No 126
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=28.06 E-value=49 Score=26.77 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHHhh
Q 032762 4 KVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 4 K~~llL~l~la~~LlvS 20 (134)
|+++++.++++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (237)
T PRK11009 2 KKITLALSAVCLLFALN 18 (237)
T ss_pred chhHHHHHHHHHHHHcc
Confidence 34444433444444333
No 127
>PLN02682 pectinesterase family protein
Probab=28.03 E-value=20 Score=31.22 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhhhHH
Q 032762 7 LMLGLLVSIVLLISSEA 23 (134)
Q Consensus 7 llL~l~la~~LlvSSev 23 (134)
+|+.|||.+|||-|+..
T Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (369)
T PLN02682 7 FLACLLLLVFLLPSSQT 23 (369)
T ss_pred hHHHHHHHHhhccCCcc
Confidence 33444444555544433
No 128
>TIGR02659 TTQ_MADH_Lt methylamine dehydrogenase light chain. This family consists of the light chain of methylamine dehydrogenase light chain, a periplasmic enzyme. This subunit contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from Trp-114 and Trp-165 of the precursor, numbered according to the sequence from Paracoccus denitrificans. The enzyme forms a complex with the type I blue copper protein amicyanin and cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=28.01 E-value=40 Score=26.88 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=22.8
Q ss_pred CCCCCCCccCCCccCCCCcccccccccccCCCC
Q 032762 102 YGCCGRGYYGRGCRCCSYAGEAVNAQTEAEPQN 134 (134)
Q Consensus 102 ~gcc~~~~~g~c~rcc~~~~e~~~~~~~~~~~~ 134 (134)
+=||++.. |.||=+..-|--.|+++++.+|
T Consensus 130 nDCCGk~~---CgrC~C~~~ege~P~Yrp~~~N 159 (186)
T TIGR02659 130 RDCCGYNV---SGRCPCLNTEGELPVYRPEFAN 159 (186)
T ss_pred ccccCCCc---cCceeccCCcCCCcccccCcCC
Confidence 56998877 5576666667777888888777
No 129
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=27.90 E-value=71 Score=21.43 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 032762 5 VFLMLGLLVSIVL 17 (134)
Q Consensus 5 ~~llL~l~la~~L 17 (134)
+|++|+++|+.+|
T Consensus 9 af~vLvi~l~~~l 21 (90)
T PF06103_consen 9 AFAVLVIFLIKVL 21 (90)
T ss_pred HHHHHHHHHHHHH
Confidence 3555555544433
No 130
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=27.87 E-value=8.1 Score=23.31 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=19.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVD 49 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVn 49 (134)
+||.+++..+|+.+.++++ .. ...++++.|+
T Consensus 24 a~V~f~~~~~A~~a~~~l~-~~---~~~g~~l~V~ 54 (56)
T PF13893_consen 24 AFVEFASVEDAQKAIEQLN-GR---QFNGRPLKVS 54 (56)
T ss_dssp EEEEESSHHHHHHHHHHHT-TS---EETTEEEEEE
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCcEEEEE
Confidence 3467788888899888877 22 3444444443
No 131
>COG4727 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.75 E-value=68 Score=26.88 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=8.3
Q ss_pred CchhHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSI 15 (134)
Q Consensus 1 M~sK~~llL~l~la~ 15 (134)
|..|.+++|+++|++
T Consensus 1 m~~~~~~v~afal~l 15 (287)
T COG4727 1 MSAARLLVLAFALAL 15 (287)
T ss_pred CchHHHHHHHHHHHH
Confidence 655666655554444
No 132
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.62 E-value=67 Score=25.03 Aligned_cols=13 Identities=31% Similarity=0.564 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhh
Q 032762 9 LGLLVSIVLLISS 21 (134)
Q Consensus 9 L~l~la~~LlvSS 21 (134)
|++++++++.+.+
T Consensus 17 lai~~s~~~~~~~ 29 (161)
T COG5353 17 LAIILSIALFFWK 29 (161)
T ss_pred HHHHHHHHHHHhH
Confidence 4444555554443
No 133
>PRK06287 cobalt transport protein CbiN; Validated
Probab=27.43 E-value=74 Score=22.85 Aligned_cols=11 Identities=55% Similarity=0.899 Sum_probs=5.2
Q ss_pred CchhHHHHHHH
Q 032762 1 MGSKVFLMLGL 11 (134)
Q Consensus 1 M~sK~~llL~l 11 (134)
|-.|+||+..+
T Consensus 2 ~~~~~~~~~~~ 12 (107)
T PRK06287 2 MDNKKFLIAGL 12 (107)
T ss_pred CcchhhHHHHH
Confidence 44455555333
No 134
>PRK05996 motB flagellar motor protein MotB; Validated
Probab=27.30 E-value=98 Score=27.61 Aligned_cols=8 Identities=13% Similarity=0.621 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 032762 8 MLGLLVSI 15 (134)
Q Consensus 8 lL~l~la~ 15 (134)
||+|||++
T Consensus 43 lm~fFl~l 50 (423)
T PRK05996 43 MMAFFLVM 50 (423)
T ss_pred HHHHHHHH
Confidence 34444433
No 135
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=26.86 E-value=57 Score=23.80 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=3.7
Q ss_pred HHHHHHhhh
Q 032762 13 VSIVLLISS 21 (134)
Q Consensus 13 la~~LlvSS 21 (134)
+++|+++++
T Consensus 10 ~~~~~~~~~ 18 (115)
T PRK09838 10 FSLFSVIGF 18 (115)
T ss_pred HHHHHHHhh
Confidence 334444443
No 136
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=26.67 E-value=78 Score=26.79 Aligned_cols=12 Identities=50% Similarity=0.592 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 032762 6 FLMLGLLVSIVL 17 (134)
Q Consensus 6 ~llL~l~la~~L 17 (134)
||++.||+..||
T Consensus 12 ~~~~~~~~~~~~ 23 (279)
T PF07271_consen 12 FLLAWLLFVSVL 23 (279)
T ss_pred HHHHHHHHHHHH
Confidence 444455444443
No 137
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.64 E-value=14 Score=30.79 Aligned_cols=26 Identities=31% Similarity=0.266 Sum_probs=18.2
Q ss_pred HHHHHHHhccccccCccccCcccccCCCcc
Q 032762 24 AARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 24 aArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
.|..+++.|+ +. |+-+|+++||.+++
T Consensus 64 DAaaAiDNMn-es---EL~GrtirVN~AkP 89 (298)
T KOG0111|consen 64 DAAAAIDNMN-ES---ELFGRTIRVNLAKP 89 (298)
T ss_pred hhHHHhhcCc-hh---hhcceeEEEeecCC
Confidence 3445566666 22 67899999998876
No 138
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=26.45 E-value=51 Score=23.69 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 032762 3 SKVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 3 sK~~llL~l~la~~LlvS 20 (134)
+|.+|.+++.++++|++.
T Consensus 8 sk~~l~~aiG~~lal~i~ 25 (104)
T PF01307_consen 8 SKSYLAAAIGVSLALIIF 25 (104)
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 577887777666665553
No 139
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=26.18 E-value=72 Score=28.25 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 032762 5 VFLMLGLLVSIVLLISSEAA 24 (134)
Q Consensus 5 ~~llL~l~la~~LlvSSeva 24 (134)
+.-+|+|+||+.+|++++.+
T Consensus 3 a~aclalvl~a~~l~~~~~a 22 (434)
T KOG3555|consen 3 ASACLALVLAAWCLIGSAEA 22 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44577888888888877554
No 140
>COG1320 MnhG Multisubunit Na+/H+ antiporter, MnhG subunit [Inorganic ion transport and metabolism]
Probab=26.12 E-value=93 Score=22.74 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHhcc
Q 032762 11 LLVSIVLLISSEAAARDLAETSN 33 (134)
Q Consensus 11 l~la~~LlvSSevaArelaE~~~ 33 (134)
+++++|+++.+.++|--++.+.-
T Consensus 70 il~~lfi~lt~Pv~ah~iarAay 92 (113)
T COG1320 70 ILLALFILLTAPVGAHAIARAAY 92 (113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455667777776655554433
No 141
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=25.88 E-value=24 Score=26.88 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHH
Q 032762 4 KVFLMLGLLVSIVLLISSEAAARDL 28 (134)
Q Consensus 4 K~~llL~l~la~~LlvSSevaArel 28 (134)
|..+||++++++ +++..+.|.++
T Consensus 2 k~~~l~a~l~~~--~~~~~a~A~eL 24 (142)
T PF10614_consen 2 KYRGLLALLLLL--LAASSAQAQEL 24 (142)
T ss_pred cEeHHHHHHHHH--Hcccccchhhe
Confidence 444445544222 22444445544
No 142
>PRK10455 periplasmic protein; Reviewed
Probab=25.61 E-value=68 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=7.2
Q ss_pred HHHHHHHHHhhhH
Q 032762 10 GLLVSIVLLISSE 22 (134)
Q Consensus 10 ~l~la~~LlvSSe 22 (134)
+|+||++|.+++.
T Consensus 6 ~~~~as~l~~g~~ 18 (161)
T PRK10455 6 ALFVASTLALGAA 18 (161)
T ss_pred HHHHHHHHHHHHH
Confidence 4455666665554
No 143
>PRK10208 acid-resistance protein; Provisional
Probab=25.57 E-value=56 Score=24.17 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=6.8
Q ss_pred hHHHH--HHHHHHHHHHh
Q 032762 4 KVFLM--LGLLVSIVLLI 19 (134)
Q Consensus 4 K~~ll--L~l~la~~Llv 19 (134)
|..++ |+++|++.|++
T Consensus 5 ~~~~~~a~a~~~~~~~~~ 22 (114)
T PRK10208 5 KTNMKKALAVVLGGLLLL 22 (114)
T ss_pred HhHHHHHHHHHHHhhhhh
Confidence 44444 44444444444
No 144
>CHL00066 psbH photosystem II protein H
Probab=25.44 E-value=55 Score=22.42 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=4.8
Q ss_pred HHHHHHHhhh
Q 032762 12 LVSIVLLISS 21 (134)
Q Consensus 12 ~la~~LlvSS 21 (134)
+||+||+|..
T Consensus 49 lf~vfl~iiL 58 (73)
T CHL00066 49 LFAVFLSIIL 58 (73)
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 145
>PRK10095 ribonuclease I; Provisional
Probab=25.43 E-value=44 Score=27.84 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=2.7
Q ss_pred cCCCCc
Q 032762 115 RCCSYA 120 (134)
Q Consensus 115 rcc~~~ 120 (134)
+-|.++
T Consensus 118 ~~C~~~ 123 (268)
T PRK10095 118 RKCSAP 123 (268)
T ss_pred ccccCC
Confidence 345543
No 146
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=25.42 E-value=76 Score=22.24 Aligned_cols=15 Identities=20% Similarity=0.456 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSIVLL 18 (134)
Q Consensus 4 K~~llL~l~la~~Ll 18 (134)
|+|++.+++|+++||
T Consensus 3 ~klll~aviLs~~LL 17 (85)
T PRK09973 3 TIFTVGAVVLATCLL 17 (85)
T ss_pred hhHHHHHHHHHHHHH
Confidence 455555555555444
No 147
>PF03866 HAP: Hydrophobic abundant protein (HAP) ; InterPro: IPR005566 Expression of Hydrophobic Abundant protein is thought to be developmentally regulated and possibly involved in spherule cell wall formation [].
Probab=25.25 E-value=98 Score=23.86 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 032762 5 VFLMLGLLVSIVLLISSEAA 24 (134)
Q Consensus 5 ~~llL~l~la~~LlvSSeva 24 (134)
++++++|.|.+++.+++|+.
T Consensus 3 kyvfvalc~~avvalate~~ 22 (164)
T PF03866_consen 3 KYVFVALCLFAVVALATEVE 22 (164)
T ss_pred hhHHHHHHHHHHHHHhhHHH
Confidence 45556665556666666654
No 148
>PRK11372 lysozyme inhibitor; Provisional
Probab=25.09 E-value=65 Score=23.17 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=6.7
Q ss_pred CchhHHHHHHH
Q 032762 1 MGSKVFLMLGL 11 (134)
Q Consensus 1 M~sK~~llL~l 11 (134)
|-.|++|+|++
T Consensus 1 ~~mk~ll~~~~ 11 (109)
T PRK11372 1 MSMKKLLIICL 11 (109)
T ss_pred CchHHHHHHHH
Confidence 66687665544
No 149
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=25.08 E-value=75 Score=19.74 Aligned_cols=9 Identities=22% Similarity=0.519 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 032762 9 LGLLVSIVL 17 (134)
Q Consensus 9 L~l~la~~L 17 (134)
+.|+|.+||
T Consensus 11 mIiflslfl 19 (54)
T PF07127_consen 11 MIIFLSLFL 19 (54)
T ss_pred HHHHHHHHH
Confidence 444444444
No 150
>PHA02054 hypothetical protein
Probab=25.03 E-value=46 Score=23.50 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHhhhH
Q 032762 3 SKVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 3 sK~~llL~l~la~~LlvSSe 22 (134)
.|.|..++|++|.+-+++.+
T Consensus 2 ~k~~~~ial~~a~~h~v~a~ 21 (94)
T PHA02054 2 PKIIAAVALLVATVHLVSAN 21 (94)
T ss_pred chhHHHHHHHHHHhheeecC
Confidence 47788888888887777654
No 151
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=24.94 E-value=62 Score=25.54 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=9.4
Q ss_pred CchhHHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIV 16 (134)
Q Consensus 1 M~sK~~llL~l~la~~ 16 (134)
|-.|++||-+++||++
T Consensus 1 M~~~k~l~~~~~~a~v 16 (179)
T COG3470 1 MKMKKLLLSAAILASV 16 (179)
T ss_pred CchHHHHHHHHHHHHH
Confidence 5566777665554443
No 152
>COG1991 Uncharacterized conserved protein [Function unknown]
Probab=24.55 E-value=1.1e+02 Score=23.18 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.4
Q ss_pred hhHHHH
Q 032762 3 SKVFLM 8 (134)
Q Consensus 3 sK~~ll 8 (134)
|+.|+|
T Consensus 17 SLEf~L 22 (131)
T COG1991 17 SLEFSL 22 (131)
T ss_pred eeehHH
Confidence 344443
No 153
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=24.34 E-value=65 Score=26.75 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=4.1
Q ss_pred hHHHHHHHH
Q 032762 4 KVFLMLGLL 12 (134)
Q Consensus 4 K~~llL~l~ 12 (134)
|++|+++++
T Consensus 3 kk~~~~~~~ 11 (310)
T PRK01326 3 KKLIAGAVT 11 (310)
T ss_pred hhHHHHHHH
Confidence 455444443
No 154
>PRK09125 DNA ligase; Provisional
Probab=24.25 E-value=38 Score=27.95 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 032762 6 FLMLGLLVSIVLLISS 21 (134)
Q Consensus 6 ~llL~l~la~~LlvSS 21 (134)
||||.|+||++|+++-
T Consensus 1 ~~~~~~~~~~~~~~~~ 16 (282)
T PRK09125 1 FLLLLLLLALALLLAL 16 (282)
T ss_pred CchHHHHHHHHHHHHH
Confidence 3555556666665543
No 155
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=23.92 E-value=61 Score=22.20 Aligned_cols=10 Identities=30% Similarity=0.348 Sum_probs=4.6
Q ss_pred HHHHHHHhhh
Q 032762 12 LVSIVLLISS 21 (134)
Q Consensus 12 ~la~~LlvSS 21 (134)
+||+||+|..
T Consensus 49 lf~vfl~iil 58 (73)
T PLN00055 49 LFAVFLSIIL 58 (73)
T ss_pred HHHHHHHHHH
Confidence 3444555443
No 156
>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.
Probab=23.88 E-value=25 Score=26.75 Aligned_cols=7 Identities=29% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 032762 6 FLMLGLL 12 (134)
Q Consensus 6 ~llL~l~ 12 (134)
+|+|+.+
T Consensus 34 ll~Laa~ 40 (138)
T PF05479_consen 34 LLGLAAV 40 (138)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 4444433
No 157
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=23.84 E-value=64 Score=22.88 Aligned_cols=8 Identities=0% Similarity=0.289 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 032762 8 MLGLLVSI 15 (134)
Q Consensus 8 lL~l~la~ 15 (134)
||+|++++
T Consensus 10 lIIlvIvL 17 (89)
T PRK03554 10 LIIAVIVV 17 (89)
T ss_pred HHHHHHHH
Confidence 33333333
No 158
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=23.81 E-value=1e+02 Score=21.74 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSIVLL 18 (134)
Q Consensus 4 K~~llL~l~la~~Ll 18 (134)
|+||++.+++.++|+
T Consensus 34 KrlliivvVvVlvVv 48 (93)
T PF08999_consen 34 KRLLIIVVVVVLVVV 48 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeeehhHH
Confidence 777665554434333
No 159
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=23.75 E-value=79 Score=21.35 Aligned_cols=12 Identities=42% Similarity=0.517 Sum_probs=5.5
Q ss_pred HHHHhhhHHHHH
Q 032762 15 IVLLISSEAAAR 26 (134)
Q Consensus 15 ~~LlvSSevaAr 26 (134)
+++++++.+.|+
T Consensus 20 ~~~~~~~~A~A~ 31 (99)
T PF04956_consen 20 ALLLLASPAFAQ 31 (99)
T ss_pred HHHHhCchhhhc
Confidence 344455444443
No 160
>PF11355 DUF3157: Protein of unknown function (DUF3157); InterPro: IPR021501 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.54 E-value=51 Score=26.56 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSI 15 (134)
Q Consensus 4 K~~llL~l~la~ 15 (134)
|.+++|+|+|++
T Consensus 2 k~~~~lalll~s 13 (199)
T PF11355_consen 2 KTYILLALLLLS 13 (199)
T ss_pred chHHHHHHHHHh
Confidence 556666665433
No 161
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=23.48 E-value=71 Score=29.35 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHHHHHhhh
Q 032762 1 MGSKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSS 21 (134)
|++|..+|-+|.|.++|++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (566)
T PLN02713 1 MSSKLILLTTLALLLLLFFSS 21 (566)
T ss_pred CchhHHHHHHHHHHHHHhcch
Confidence 889876665555534444443
No 162
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=23.38 E-value=36 Score=25.12 Aligned_cols=8 Identities=50% Similarity=1.344 Sum_probs=4.4
Q ss_pred CCCCCCCC
Q 032762 98 GYCRYGCC 105 (134)
Q Consensus 98 ~~c~~gcc 105 (134)
+.|..|=|
T Consensus 70 G~C~~G~C 77 (120)
T PF07771_consen 70 GVCQDGLC 77 (120)
T ss_pred eEecCCEE
Confidence 45665554
No 163
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=23.11 E-value=57 Score=24.63 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhHH
Q 032762 8 MLGLLVSIVLLISSEA 23 (134)
Q Consensus 8 lL~l~la~~LlvSSev 23 (134)
+|+|+|.++|.++|.+
T Consensus 11 ~~g~~~~~~l~~~~~~ 26 (165)
T TIGR01944 11 ALGLALGAILGYAARR 26 (165)
T ss_pred HHHHHHHHHHHHheee
Confidence 3677777777777754
No 164
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=23.10 E-value=28 Score=25.91 Aligned_cols=13 Identities=38% Similarity=0.692 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh
Q 032762 8 MLGLLVSIVLLIS 20 (134)
Q Consensus 8 lL~l~la~~LlvS 20 (134)
+|+|+|+++|+|.
T Consensus 31 iL~VILgiLLliG 43 (118)
T PF14991_consen 31 ILIVILGILLLIG 43 (118)
T ss_dssp -------------
T ss_pred eHHHHHHHHHHHh
Confidence 4556666666664
No 165
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=22.95 E-value=70 Score=29.10 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=16.1
Q ss_pred CchhHHHHHHHHHHHHHHhhhH
Q 032762 1 MGSKVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSSe 22 (134)
|-++.||||..+++++|++|+-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~s~c 22 (521)
T PRK14018 1 MKHRTFFSLCAKFGCLLALGAC 22 (521)
T ss_pred CcchHHHHHHHHHHHHHhhccc
Confidence 7777888877777777777654
No 166
>PF10956 DUF2756: Protein of unknown function (DUF2756); InterPro: IPR020158 This entry contains proteins with no known function.
Probab=22.86 E-value=67 Score=23.36 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=5.3
Q ss_pred hHHHHHHHH
Q 032762 4 KVFLMLGLL 12 (134)
Q Consensus 4 K~~llL~l~ 12 (134)
|++|+|+++
T Consensus 2 K~ll~laal 10 (104)
T PF10956_consen 2 KRLLILAAL 10 (104)
T ss_pred hHHHHHHHH
Confidence 666665544
No 167
>PRK02463 OxaA-like protein precursor; Provisional
Probab=22.46 E-value=78 Score=26.78 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHhhhH
Q 032762 4 KVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 4 K~~llL~l~la~~LlvSSe 22 (134)
|++++++++++++|++|.-
T Consensus 6 k~~~~~~~~~~~~~~lsgc 24 (307)
T PRK02463 6 KRILFSGLALSMLLTLTGC 24 (307)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4566666666666666554
No 168
>PRK10259 hypothetical protein; Provisional
Probab=22.42 E-value=94 Score=21.65 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 032762 5 VFLMLGLLVSIV 16 (134)
Q Consensus 5 ~~llL~l~la~~ 16 (134)
++++.+|+|+++
T Consensus 5 k~~~aa~~ls~~ 16 (86)
T PRK10259 5 NTVVAAMALSTL 16 (86)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 169
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.41 E-value=89 Score=22.23 Aligned_cols=7 Identities=29% Similarity=0.600 Sum_probs=3.3
Q ss_pred hHHHHHH
Q 032762 4 KVFLMLG 10 (134)
Q Consensus 4 K~~llL~ 10 (134)
|+++||+
T Consensus 2 Kk~~ll~ 8 (114)
T PF11777_consen 2 KKIILLA 8 (114)
T ss_pred chHHHHH
Confidence 5544443
No 170
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=22.36 E-value=81 Score=22.08 Aligned_cols=11 Identities=36% Similarity=0.350 Sum_probs=6.9
Q ss_pred CchhHHHHHHH
Q 032762 1 MGSKVFLMLGL 11 (134)
Q Consensus 1 M~sK~~llL~l 11 (134)
|=+|-|++|+|
T Consensus 1 MF~Kc~~~l~l 11 (84)
T PF07312_consen 1 MFQKCIIVLLL 11 (84)
T ss_pred ChHHHHHHHHH
Confidence 66787766643
No 171
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=22.36 E-value=44 Score=29.17 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 032762 3 SKVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 3 sK~~llL~l~la~~LlvSS 21 (134)
.|.+||++|+|++|+++..
T Consensus 17 ~~~l~l~~l~~~~~~l~~~ 35 (402)
T PF06990_consen 17 RKGLVLGVLLLSSFLLLVY 35 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665443
No 172
>PRK11443 lipoprotein; Provisional
Probab=22.22 E-value=73 Score=23.52 Aligned_cols=8 Identities=38% Similarity=0.330 Sum_probs=3.8
Q ss_pred hHHHHHHH
Q 032762 4 KVFLMLGL 11 (134)
Q Consensus 4 K~~llL~l 11 (134)
|+||+++|
T Consensus 2 k~~~~~~~ 9 (124)
T PRK11443 2 KKFIAPLL 9 (124)
T ss_pred hHHHHHHH
Confidence 55554433
No 173
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=22.21 E-value=65 Score=27.33 Aligned_cols=7 Identities=71% Similarity=1.739 Sum_probs=3.6
Q ss_pred CCCccCC
Q 032762 106 GRGYYGR 112 (134)
Q Consensus 106 ~~~~~g~ 112 (134)
.+.||||
T Consensus 171 gk~Y~GR 177 (286)
T KOG4742|consen 171 GKSYYGR 177 (286)
T ss_pred CCccccc
Confidence 4555553
No 174
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=22.21 E-value=1.6e+02 Score=26.25 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 032762 6 FLMLGLLVSIVLLISSEAA 24 (134)
Q Consensus 6 ~llL~l~la~~LlvSSeva 24 (134)
+++|.+++.++++++|..+
T Consensus 358 ~~~l~~il~~if~vTs~DS 376 (453)
T TIGR00842 358 TSALALIVIIIFFITSADS 376 (453)
T ss_pred HHHHHHHHHHHHHHhcchH
Confidence 3334444444444444333
No 175
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=22.06 E-value=69 Score=20.59 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=3.9
Q ss_pred HHHHHHHhh
Q 032762 12 LVSIVLLIS 20 (134)
Q Consensus 12 ~la~~LlvS 20 (134)
+|++|+++.
T Consensus 34 lf~vfl~ii 42 (52)
T PF00737_consen 34 LFAVFLLII 42 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 176
>PLN00054 photosystem I reaction center subunit N; Provisional
Probab=22.04 E-value=72 Score=24.23 Aligned_cols=7 Identities=43% Similarity=0.506 Sum_probs=2.7
Q ss_pred HHHHhcc
Q 032762 27 DLAETSN 33 (134)
Q Consensus 27 elaE~~~ 33 (134)
|+.|.+.
T Consensus 58 d~L~kS~ 64 (139)
T PLN00054 58 DLLAKSK 64 (139)
T ss_pred HHHHHhh
Confidence 3333333
No 177
>PRK01622 OxaA-like protein precursor; Validated
Probab=22.00 E-value=85 Score=25.61 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=10.9
Q ss_pred chhHHHHHHHHHHHHHHhhhH
Q 032762 2 GSKVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 2 ~sK~~llL~l~la~~LlvSSe 22 (134)
-+|+.+.|+++++++|++|.-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~gc 23 (256)
T PRK01622 3 KSYRAVLVSLSLLLVLVLSGC 23 (256)
T ss_pred hHHHHHHHHHHHHHHHHHhcc
Confidence 355555555555555555544
No 178
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=21.90 E-value=73 Score=19.62 Aligned_cols=6 Identities=33% Similarity=0.318 Sum_probs=2.6
Q ss_pred hHHHHH
Q 032762 4 KVFLML 9 (134)
Q Consensus 4 K~~llL 9 (134)
|+++-|
T Consensus 2 ~~~~~~ 7 (92)
T TIGR02052 2 KKLATL 7 (92)
T ss_pred hhHHHH
Confidence 444433
No 179
>PF13999 MarB: MarB protein
Probab=21.87 E-value=68 Score=21.57 Aligned_cols=7 Identities=43% Similarity=0.719 Sum_probs=3.2
Q ss_pred HHHhhhH
Q 032762 16 VLLISSE 22 (134)
Q Consensus 16 ~LlvSSe 22 (134)
+||+|.-
T Consensus 8 L~L~SGq 14 (66)
T PF13999_consen 8 LLLFSGQ 14 (66)
T ss_pred HHHHhhh
Confidence 3445543
No 180
>PRK12450 foldase protein PrsA; Reviewed
Probab=21.87 E-value=86 Score=26.07 Aligned_cols=13 Identities=0% Similarity=-0.074 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHH
Q 032762 3 SKVFLMLGLLVSI 15 (134)
Q Consensus 3 sK~~llL~l~la~ 15 (134)
.|++|++++++++
T Consensus 4 ~kk~i~~~~~~~~ 16 (309)
T PRK12450 4 MNKLITGVVTLAT 16 (309)
T ss_pred HHHHHHHHHHHHH
Confidence 3555554444333
No 181
>PF07390 P30: Mycoplasma P30 protein; InterPro: IPR009975 This family consists of several P30 proteins which seem to be specific to Mycoplasma agalactiae. P30 is a 30 kDa immunodominant antigen and is known to be a transmembrane protein [].
Probab=21.84 E-value=43 Score=27.48 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=13.3
Q ss_pred CchhHHHHHHHHHHHHHHhh
Q 032762 1 MGSKVFLMLGLLVSIVLLIS 20 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvS 20 (134)
|--|.||+|.-+|++.+-|.
T Consensus 1 MK~k~lL~LGT~ltatfSiP 20 (266)
T PF07390_consen 1 MKLKLLLNLGTALTATFSIP 20 (266)
T ss_pred CchhhhhhhhhHhhhhcccc
Confidence 76778888877666644443
No 182
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=21.65 E-value=87 Score=23.34 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=2.4
Q ss_pred hHHHHH
Q 032762 4 KVFLML 9 (134)
Q Consensus 4 K~~llL 9 (134)
|+++++
T Consensus 2 KK~~~~ 7 (126)
T TIGR00156 2 KFQAIV 7 (126)
T ss_pred chHHHH
Confidence 444433
No 183
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.55 E-value=1.9e+02 Score=21.21 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=8.5
Q ss_pred HHHHHHHhhhHHHHHH
Q 032762 12 LVSIVLLISSEAAARD 27 (134)
Q Consensus 12 ~la~~LlvSSevaAre 27 (134)
++.+|+++++.+++--
T Consensus 73 l~~~f~~lT~Pvaah~ 88 (118)
T PRK12587 73 VGIIFVLITGPLSSHM 88 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344556666665433
No 184
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=21.53 E-value=26 Score=29.81 Aligned_cols=28 Identities=36% Similarity=0.474 Sum_probs=13.5
Q ss_pred CchhHHHHHH------HHHHHHHHhhhHHHHHHHHH
Q 032762 1 MGSKVFLMLG------LLVSIVLLISSEAAARDLAE 30 (134)
Q Consensus 1 M~sK~~llL~------l~la~~LlvSSevaArelaE 30 (134)
|||++--|++ -||++|++++ ++|+++.-
T Consensus 8 masrwgpliglapcclwLLgavllmd--AsarPaNh 41 (362)
T KOG4251|consen 8 MASRWGPLIGLAPCCLWLLGAVLLMD--ASARPANH 41 (362)
T ss_pred HHhhccchhchHHHHHHHHHHHHHhh--hhcCcccc
Confidence 7787643322 2344444443 45565543
No 185
>PRK06778 hypothetical protein; Validated
Probab=21.50 E-value=1e+02 Score=25.65 Aligned_cols=9 Identities=0% Similarity=0.076 Sum_probs=3.8
Q ss_pred HHHHHHhcc
Q 032762 25 ARDLAETSN 33 (134)
Q Consensus 25 ArelaE~~~ 33 (134)
.+++++..+
T Consensus 51 ~~~~~~s~~ 59 (289)
T PRK06778 51 RESIIAALH 59 (289)
T ss_pred HHHHHHHhc
Confidence 344444443
No 186
>PRK15206 long polar fimbrial protein LpfD; Provisional
Probab=21.49 E-value=70 Score=27.76 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=7.0
Q ss_pred CchhHHHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIVL 17 (134)
Q Consensus 1 M~sK~~llL~l~la~~L 17 (134)
|=.|+++++.||+.++|
T Consensus 1 ~~~k~~~~~~~l~~~~~ 17 (359)
T PRK15206 1 MLKKLMMFTGLLGGSVL 17 (359)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 43444444444443333
No 187
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=21.46 E-value=78 Score=25.22 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHhhhH
Q 032762 3 SKVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 3 sK~~llL~l~la~~LlvSSe 22 (134)
.|+++.+++++++.|++++-
T Consensus 2 ~~~~~~~~~~~~~~~~lsgC 21 (219)
T PRK10510 2 KKRVYLIAAVVSGALAVSGC 21 (219)
T ss_pred cccHHHHHHHHHHHHHHhcc
Confidence 35566666666665655543
No 188
>TIGR03043 PS_II_psbZ photosystem II core protein PsbZ. PsbZ is a core protein of photosystem II in thylakoid-containing Cyanobacteria and plant chloroplasts. The original Chlamydomonas gene symbol, ycf9, is a synonym. PsbZ controls the interaction of the reaction center core with the light-harvesting antenna.
Probab=21.43 E-value=1e+02 Score=20.15 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 032762 5 VFLMLGLLVSIVLLISS 21 (134)
Q Consensus 5 ~~llL~l~la~~LlvSS 21 (134)
++++++|++..|+++..
T Consensus 3 Ql~v~aLi~~Sf~LVVg 19 (58)
T TIGR03043 3 QLAVLALVLLSFVLVVG 19 (58)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45666666666666543
No 189
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=21.23 E-value=2e+02 Score=20.29 Aligned_cols=20 Identities=40% Similarity=0.474 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 032762 11 LLVSIVLLISSEAAARDLAE 30 (134)
Q Consensus 11 l~la~~LlvSSevaArelaE 30 (134)
+++.+|+++.+.+++.-++.
T Consensus 66 lli~~f~~lT~Pvaah~iar 85 (99)
T PRK12670 66 LLLICLLWITSTTASYALAR 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666544433
No 190
>PRK13871 conjugal transfer protein TrbC; Provisional
Probab=21.15 E-value=96 Score=23.58 Aligned_cols=9 Identities=33% Similarity=0.397 Sum_probs=5.7
Q ss_pred CchhHHHHH
Q 032762 1 MGSKVFLML 9 (134)
Q Consensus 1 M~sK~~llL 9 (134)
|..|+.+++
T Consensus 1 m~~k~~~~~ 9 (135)
T PRK13871 1 MSRKTRITL 9 (135)
T ss_pred CchhHHHHH
Confidence 766776643
No 191
>PF01737 Ycf9: YCF9; InterPro: IPR002644 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents PsbZ (Ycf9), which is a core low molecular weight transmembrane protein of photosystem II in thylakoid-containing chloroplasts of cyanobacteria and plants. It is thought to be located at the interface of PSII and LHCII (light-harvesting complex II) complexes, the latter containing the light-harvesting antenna. PsbZ appears to act as a structural factor, or linker, that stabilises the PSII-LHCII supercomplexes, which fail to form in PsbZ-deficient mutants. This may in part be due to the marked decrease in two LHCII antenna proteins, CP26 and CP29, found in PsbZ-deficient mutants, which result in structural changes, as well as functional modifications in PSII []. PsbZ may also be involved in photo-protective processes under sub-optimal growth conditions.; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009539 photosystem II reaction center; PDB: 3A0B_Z 3ARC_Z 3A0H_Z 3PRQ_Z 4FBY_l 2AXT_z 3PRR_Z 3BZ1_Z 3KZI_Z 1S5L_Z ....
Probab=21.08 E-value=1.1e+02 Score=20.09 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhh
Q 032762 5 VFLMLGLLVSIVLLISS 21 (134)
Q Consensus 5 ~~llL~l~la~~LlvSS 21 (134)
++++++|++..|+++..
T Consensus 3 Ql~v~aLi~~Sf~LVVg 19 (59)
T PF01737_consen 3 QLAVFALIALSFLLVVG 19 (59)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666665543
No 192
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=20.93 E-value=1.4e+02 Score=16.94 Aligned_cols=9 Identities=22% Similarity=0.087 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 032762 6 FLMLGLLVS 14 (134)
Q Consensus 6 ~llL~l~la 14 (134)
+|.++|+++
T Consensus 11 ~ly~~l~~~ 19 (29)
T TIGR03063 11 GLYAVLFLG 19 (29)
T ss_pred HHHHHHHHH
Confidence 444444443
No 193
>PF15281 Consortin_C: Consortin C-terminus
Probab=20.87 E-value=83 Score=23.22 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 032762 7 LMLGLLVSIVLLIS 20 (134)
Q Consensus 7 llL~l~la~~LlvS 20 (134)
|+|+||..++|++|
T Consensus 55 l~L~LlclvTv~lS 68 (113)
T PF15281_consen 55 LLLLLLCLVTVVLS 68 (113)
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444555554
No 194
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=20.69 E-value=28 Score=23.98 Aligned_cols=10 Identities=60% Similarity=0.640 Sum_probs=5.2
Q ss_pred hhHHHHHHHH
Q 032762 20 SSEAAARDLA 29 (134)
Q Consensus 20 SSevaArela 29 (134)
++..+||++-
T Consensus 10 ~~~~AARp~p 19 (81)
T PF06404_consen 10 TSAAAARPLP 19 (81)
T ss_pred hHhhhcCCCC
Confidence 3345566643
No 195
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=20.66 E-value=1.5e+02 Score=18.91 Aligned_cols=7 Identities=29% Similarity=0.861 Sum_probs=3.6
Q ss_pred hHHHHHH
Q 032762 4 KVFLMLG 10 (134)
Q Consensus 4 K~~llL~ 10 (134)
+++|+|+
T Consensus 6 Rs~L~~~ 12 (54)
T PF06716_consen 6 RSYLLLA 12 (54)
T ss_pred HHHHHHH
Confidence 4555543
No 196
>COG3637 Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]
Probab=20.66 E-value=94 Score=24.22 Aligned_cols=8 Identities=25% Similarity=0.206 Sum_probs=3.5
Q ss_pred hHHHHHHH
Q 032762 4 KVFLMLGL 11 (134)
Q Consensus 4 K~~llL~l 11 (134)
|.+|++++
T Consensus 2 k~~l~~a~ 9 (199)
T COG3637 2 KKLLAAAA 9 (199)
T ss_pred hhHHHHHH
Confidence 44444444
No 197
>PRK13792 lysozyme inhibitor; Provisional
Probab=20.59 E-value=70 Score=23.88 Aligned_cols=8 Identities=25% Similarity=0.243 Sum_probs=3.3
Q ss_pred hHHHHHHH
Q 032762 4 KVFLMLGL 11 (134)
Q Consensus 4 K~~llL~l 11 (134)
|+|++|.+
T Consensus 3 ~~l~~ll~ 10 (127)
T PRK13792 3 KALWLLLA 10 (127)
T ss_pred hHHHHHHH
Confidence 45443333
No 198
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=20.59 E-value=1.2e+02 Score=20.06 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHH
Q 032762 4 KVFLMLGLLVSIVL 17 (134)
Q Consensus 4 K~~llL~l~la~~L 17 (134)
+.+..++++||+++
T Consensus 42 ~~~~~~~~ilaiil 55 (64)
T PF01998_consen 42 PRIAKIAMILAIIL 55 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 199
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=20.55 E-value=1.8e+02 Score=16.55 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=7.9
Q ss_pred CchhHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSI 15 (134)
Q Consensus 1 M~sK~~llL~l~la~ 15 (134)
|-|-.-++++|++|+
T Consensus 1 misd~Qi~iAL~~Al 15 (30)
T CHL00190 1 MISDSQIFIALFLAL 15 (30)
T ss_pred CchHHHHHHHHHHHH
Confidence 445444555665544
No 200
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.51 E-value=1.3e+02 Score=22.98 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=7.3
Q ss_pred HHHHHHHhhhHHHHH
Q 032762 12 LVSIVLLISSEAAAR 26 (134)
Q Consensus 12 ~la~~LlvSSevaAr 26 (134)
.||+++++|+.+.|+
T Consensus 13 ala~~~~~s~~a~A~ 27 (143)
T PRK11546 13 ALSALAMGSGSAFAH 27 (143)
T ss_pred HHHHHHHhhhHHHHh
Confidence 334444555555444
No 201
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=20.42 E-value=34 Score=26.08 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHhhhH
Q 032762 1 MGSKVFLMLGLLVSIVLLISSE 22 (134)
Q Consensus 1 M~sK~~llL~l~la~~LlvSSe 22 (134)
|=.|.++++.+++|+++|.|.+
T Consensus 1 ~~~~i~~~~~~~~~~~~l~sC~ 22 (137)
T PF12988_consen 1 MIQKIIIGCCLLLALLLLSSCD 22 (137)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHHHHHHHHHHhhcC
Confidence 4455556666666666665553
No 202
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=20.42 E-value=61 Score=24.53 Aligned_cols=11 Identities=45% Similarity=0.781 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 032762 9 LGLLVSIVLLI 19 (134)
Q Consensus 9 L~l~la~~Llv 19 (134)
|.|+++++|++
T Consensus 4 ~~~~~~~~~~~ 14 (235)
T TIGR03302 4 LILLLALLLLL 14 (235)
T ss_pred HHHHHHHHHHH
Confidence 33333343433
No 203
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=20.35 E-value=1.7e+02 Score=21.96 Aligned_cols=10 Identities=30% Similarity=0.557 Sum_probs=4.3
Q ss_pred hHHHHHHHHH
Q 032762 4 KVFLMLGLLV 13 (134)
Q Consensus 4 K~~llL~l~l 13 (134)
++||.|+|+|
T Consensus 3 ~~~~~~~~~~ 12 (153)
T TIGR02738 3 RKLLIVLLLL 12 (153)
T ss_pred hHHHHHHHHH
Confidence 3444444433
No 204
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=20.32 E-value=77 Score=21.17 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 032762 8 MLGLLVSIVL 17 (134)
Q Consensus 8 lL~l~la~~L 17 (134)
||+|++|++|
T Consensus 10 liIlvI~lll 19 (67)
T PRK03625 10 LVVAALVVLL 19 (67)
T ss_pred HHHHHHHHHH
Confidence 3334333433
No 205
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=95 Score=24.61 Aligned_cols=7 Identities=29% Similarity=0.562 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 032762 13 VSIVLLI 19 (134)
Q Consensus 13 la~~Llv 19 (134)
|+++|++
T Consensus 10 liis~fl 16 (182)
T COG2143 10 LIISLFL 16 (182)
T ss_pred HHHHHHH
Confidence 3344433
No 206
>PLN02196 abscisic acid 8'-hydroxylase
Probab=20.12 E-value=86 Score=26.81 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 032762 1 MGSKVFLMLGLLVSIVLLI 19 (134)
Q Consensus 1 M~sK~~llL~l~la~~Llv 19 (134)
|.|.+++++++++++||++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (463)
T PLN02196 1 MDFSALFLTLFAGALFLCL 19 (463)
T ss_pred CchHhhhhHHHHHHHHHHH
Confidence 7777766655555555544
No 207
>PRK08055 chorismate mutase; Provisional
Probab=20.06 E-value=1.4e+02 Score=23.39 Aligned_cols=6 Identities=0% Similarity=-0.058 Sum_probs=2.3
Q ss_pred HhhhHH
Q 032762 18 LISSEA 23 (134)
Q Consensus 18 lvSSev 23 (134)
++|..+
T Consensus 17 ~~~~~~ 22 (181)
T PRK08055 17 AFALAV 22 (181)
T ss_pred HHHhHH
Confidence 333333
No 208
>PRK09950 putative transporter; Provisional
Probab=20.01 E-value=2e+02 Score=26.13 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhHHH
Q 032762 6 FLMLGLLVSIVLLISSEAA 24 (134)
Q Consensus 6 ~llL~l~la~~LlvSSeva 24 (134)
+++|.+++.++++++|..+
T Consensus 404 ~~~l~~vl~~if~vTs~DS 422 (506)
T PRK09950 404 FLAAYLGIMIIFLASHMDA 422 (506)
T ss_pred HHHHHHHHHHHHHHHhhhH
Confidence 3344444444444444333
Done!