Query 032762
Match_columns 134
No_of_seqs 156 out of 233
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 08:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 77.4 1.3 4.6E-05 37.2 2.8 35 15-53 147-181 (437)
2 2diu_A KIAA0430 protein; struc 67.5 0.93 3.2E-05 31.3 -0.4 35 15-53 49-83 (96)
3 1h2v_Z 20 kDa nuclear CAP bind 65.6 1.2 4.1E-05 31.3 -0.2 35 15-53 84-118 (156)
4 2lcw_A RNA-binding protein FUS 68.7 1.3 4.5E-05 29.5 0.0 35 15-53 60-94 (116)
5 1u6f_A Tcubp1, RNA-binding pro 60.6 2.6 9E-05 28.7 0.9 35 15-53 87-121 (139)
6 2dnz_A Probable RNA-binding pr 58.8 4 0.00014 25.7 1.5 35 15-53 50-84 (95)
7 2fc8_A NCL protein; structure 57.3 3.1 0.00011 26.7 0.8 36 15-54 57-92 (102)
8 3p5t_L Cleavage and polyadenyl 56.6 3.2 0.00011 26.3 0.7 35 15-53 48-82 (90)
9 1x4a_A Splicing factor, argini 55.3 4 0.00014 26.6 1.1 35 15-53 64-98 (109)
10 3lay_A Zinc resistance-associa 54.2 2.7 9.1E-05 31.8 0.0 22 4-25 29-50 (175)
11 4fxv_A ELAV-like protein 1; RN 54.2 1.3 4.5E-05 29.2 -1.6 35 15-53 64-98 (99)
12 2wbr_A GW182, gawky, LD47780P; 52.5 1.9 6.6E-05 29.2 -0.9 34 15-52 46-79 (89)
13 2hgn_A Heterogeneous nuclear r 50.5 3.7 0.00013 29.2 0.3 34 15-53 89-122 (139)
14 1w5c_T Cytochrome C-550; photo 50.1 2.3 7.9E-05 30.3 -0.9 14 15-28 16-29 (163)
15 4ank_A Transthyretin; hormone 50.0 3.5 0.00012 30.4 0.1 17 1-19 1-17 (147)
16 3q2s_C Cleavage and polyadenyl 46.6 2.5 8.6E-05 32.2 -1.3 33 15-51 115-147 (229)
17 2la6_A RNA-binding protein FUS 43.4 4.9 0.00017 25.7 -0.0 33 15-51 66-98 (99)
18 2jvr_A Nucleolar protein 3; RN 41.8 3.4 0.00011 28.2 -1.1 35 15-53 70-104 (111)
19 1dbg_A Chondroitinase B; beta 40.7 5.9 0.0002 34.3 0.1 11 1-11 1-11 (506)
20 1sjq_A Polypyrimidine tract-bi 40.5 6.9 0.00024 26.7 0.4 37 15-53 55-91 (105)
21 2cpi_A CCR4-NOT transcription 40.3 4.3 0.00015 26.8 -0.7 35 15-53 66-100 (111)
22 2dgx_A KIAA0430 protein; RRM d 40.2 3.6 0.00012 26.4 -1.1 35 15-53 55-89 (96)
23 2lxi_A RNA-binding protein 10; 38.7 3.4 0.00012 26.5 -1.4 36 15-53 47-82 (91)
24 2lkz_A RNA-binding protein 5; 38.7 3.2 0.00011 27.4 -1.6 38 15-52 56-93 (95)
25 1x4c_A Splicing factor, argini 38.4 3.8 0.00013 26.9 -1.2 35 15-53 53-92 (108)
26 2e5i_A Heterogeneous nuclear r 38.3 4.7 0.00016 28.2 -0.8 35 15-53 65-101 (124)
27 1wez_A HnRNP H', FTP-3, hetero 38.0 8.9 0.00031 25.1 0.6 34 15-53 58-91 (102)
28 2krb_A Eukaryotic translation 37.9 7.6 0.00026 23.9 0.2 30 15-48 50-80 (81)
29 2e44_A Insulin-like growth fac 37.8 6.7 0.00023 24.7 -0.0 34 15-52 57-90 (96)
30 2dnq_A RNA-binding protein 4B; 37.5 16 0.00055 22.7 1.8 35 15-53 45-79 (90)
31 3s8s_A Histone-lysine N-methyl 36.9 4.9 0.00017 26.9 -0.9 34 15-52 51-84 (110)
32 3arc_L Photosystem II reaction 36.8 26 0.0009 20.1 2.4 11 11-21 23-33 (37)
33 2cpe_A RNA-binding protein EWS 36.4 9.4 0.00032 24.9 0.5 35 15-53 68-102 (113)
34 2la4_A Nuclear and cytoplasmic 36.2 8 0.00027 24.7 0.1 35 15-53 66-100 (101)
35 2dgv_A HnRNP M, heterogeneous 36.0 8.2 0.00028 24.0 0.2 35 15-53 51-85 (92)
36 1x4f_A Matrin 3; structural ge 35.6 4.2 0.00014 28.1 -1.4 36 15-52 65-100 (112)
37 2e5j_A Methenyltetrahydrofolat 35.4 7.9 0.00027 24.7 -0.0 35 15-53 59-93 (97)
38 1why_A Hypothetical protein ri 35.0 11 0.00037 23.9 0.6 35 15-53 56-92 (97)
39 2fy1_A RNA-binding motif prote 34.9 8.6 0.00029 25.7 0.1 35 15-53 51-85 (116)
40 2e5h_A Zinc finger CCHC-type a 34.9 4.8 0.00016 25.3 -1.1 33 15-51 61-93 (94)
41 3mdf_A Peptidyl-prolyl CIS-tra 34.4 5.5 0.00019 24.4 -0.9 33 15-51 52-84 (85)
42 1x4d_A Matrin 3; structural ge 34.3 4.4 0.00015 27.3 -1.5 36 15-52 55-90 (102)
43 1x5t_A Splicing factor 3B subu 34.2 13 0.00045 23.2 0.9 35 15-53 51-85 (96)
44 2ek1_A RNA-binding protein 12; 32.7 7.3 0.00025 24.4 -0.5 34 15-52 60-93 (95)
45 1x5s_A Cold-inducible RNA-bind 32.0 7.1 0.00024 24.9 -0.7 35 15-53 57-91 (102)
46 3beg_B Splicing factor, argini 32.0 8.8 0.0003 25.5 -0.2 19 15-33 54-72 (115)
47 1x5u_A Splicing factor 3B subu 31.9 9.8 0.00033 24.3 0.0 35 15-53 60-94 (105)
48 2div_A TRNA selenocysteine ass 31.8 13 0.00044 23.5 0.6 35 15-53 55-93 (99)
49 2cvc_A Cytochrome CC3, high-mo 31.2 10 0.00035 32.6 0.0 8 1-8 1-9 (545)
50 2cqh_A IGF-II mRNA-binding pro 31.0 7.5 0.00026 24.4 -0.7 36 15-53 47-82 (93)
51 3ex7_B RNA-binding protein 8A; 30.4 6.5 0.00022 26.2 -1.1 35 15-53 67-101 (126)
52 2cqc_A Arginine/serine-rich sp 30.3 8.1 0.00028 24.2 -0.6 35 15-53 60-94 (95)
53 2a3j_A U1 small nuclear ribonu 30.3 10 0.00035 26.3 -0.1 35 15-53 75-109 (127)
54 2jrs_A RNA-binding protein 39; 30.3 8.8 0.0003 25.3 -0.4 35 15-53 71-105 (108)
55 2dhg_A TRNA selenocysteine ass 30.3 16 0.00055 23.2 0.9 35 15-53 54-89 (104)
56 1fj7_A Nucleolin RBD1, protein 29.9 13 0.00045 23.6 0.4 34 15-53 61-94 (101)
57 2ywk_A Putative RNA-binding pr 29.9 8.2 0.00028 24.2 -0.6 35 15-53 60-94 (95)
58 2pe8_A Splicing factor 45; RRM 29.8 7.4 0.00025 26.0 -0.9 33 15-51 59-91 (105)
59 2cqp_A RNA-binding protein 12; 29.7 7.8 0.00027 24.5 -0.8 35 15-53 60-94 (98)
60 2cq0_A Eukaryotic translation 29.6 8.3 0.00028 24.7 -0.7 35 15-53 60-94 (103)
61 1oah_A Cytochrome C nitrite re 29.6 16 0.00054 31.7 0.9 6 113-118 146-151 (519)
62 1fjc_A Nucleolin RBD2, protein 29.1 10 0.00036 23.8 -0.2 35 15-53 56-90 (96)
63 2cpz_A CUG triplet repeat RNA- 28.6 10 0.00035 24.8 -0.4 35 15-53 70-104 (115)
64 1p27_B RNA-binding protein 8A; 28.5 7.2 0.00025 25.1 -1.1 34 15-52 68-101 (106)
65 2cpf_A RNA binding motif prote 28.2 11 0.00037 23.8 -0.3 35 15-53 53-87 (98)
66 2cqb_A Peptidyl-prolyl CIS-tra 27.9 8 0.00027 24.6 -1.0 35 15-53 57-91 (102)
67 2d9p_A Polyadenylate-binding p 27.9 12 0.00042 23.8 -0.0 35 15-53 58-92 (103)
68 2cpx_A Hypothetical protein FL 27.8 13 0.00045 24.1 0.1 35 15-53 70-104 (115)
69 2hvz_A Splicing factor, argini 27.7 10 0.00035 24.1 -0.5 35 15-53 40-74 (101)
70 3bs9_A Nucleolysin TIA-1 isofo 27.3 7.5 0.00026 23.9 -1.2 34 15-52 51-84 (87)
71 3ns6_A Eukaryotic translation 27.1 9.2 0.00031 24.7 -0.8 33 15-51 57-90 (100)
72 2kxn_B Transformer-2 protein h 27.1 17 0.00059 24.8 0.6 35 15-53 91-125 (129)
73 1p1t_A Cleavage stimulation fa 26.8 14 0.00048 23.5 0.1 34 15-52 53-86 (104)
74 1x4g_A Nucleolysin TIAR; struc 26.8 8 0.00027 25.2 -1.2 35 15-53 64-98 (109)
75 1wg1_A KIAA1579 protein, homol 26.7 8.1 0.00028 24.2 -1.1 34 15-52 43-76 (88)
76 2dnp_A RNA-binding protein 14; 26.7 9.3 0.00032 23.9 -0.8 35 15-53 46-80 (90)
77 2cpd_A Apobec-1 stimulating pr 26.3 10 0.00034 24.2 -0.7 35 15-53 54-88 (99)
78 3md1_A Nuclear and cytoplasmic 26.1 9.6 0.00033 23.1 -0.8 33 16-52 47-79 (83)
79 2dgo_A Cytotoxic granule-assoc 25.9 11 0.00036 24.7 -0.7 35 15-53 60-94 (115)
80 1whw_A Hypothetical protein ri 25.8 11 0.00037 23.8 -0.6 35 15-53 53-87 (99)
81 4f25_A Polyadenylate-binding p 25.7 9.8 0.00033 25.2 -0.9 34 15-52 48-81 (115)
82 2fc9_A NCL protein; structure 25.7 9.6 0.00033 24.3 -0.9 35 15-53 56-90 (101)
83 2x1f_A MRNA 3'-END-processing 25.6 10 0.00035 24.0 -0.8 35 15-53 47-81 (96)
84 2ad9_A Polypyrimidine tract-bi 25.5 8.1 0.00028 26.8 -1.4 37 15-53 70-106 (119)
85 2e5g_A U6 snRNA-specific termi 25.5 13 0.00046 23.4 -0.2 34 15-53 48-81 (94)
86 2khc_A Testis-specific RNP-typ 25.4 8.2 0.00028 25.4 -1.3 33 15-51 85-117 (118)
87 3bqu_C 3H6 FAB light chain; be 25.3 15 0.00051 25.9 0.0 10 1-10 1-10 (233)
88 2dnm_A SRP46 splicing factor; 25.1 8.5 0.00029 24.6 -1.3 35 15-53 58-92 (103)
89 2cq1_A PTB-like protein L; RRM 25.1 6.7 0.00023 26.1 -1.8 37 15-53 54-90 (101)
90 1wex_A Hypothetical protein (r 25.0 9 0.00031 25.5 -1.2 37 15-53 54-90 (104)
91 2dgu_A Heterogeneous nuclear r 24.9 9.2 0.00032 24.6 -1.1 35 15-53 48-82 (103)
92 2dnh_A Bruno-like 5, RNA bindi 24.9 15 0.00051 23.4 -0.1 35 15-53 59-96 (105)
93 3v4m_A Splicing factor U2AF 65 24.9 7.5 0.00026 25.9 -1.6 32 15-50 62-93 (105)
94 2ytc_A PRE-mRNA-splicing facto 24.6 11 0.00038 23.0 -0.7 34 15-51 51-84 (85)
95 2cq3_A RNA-binding protein 9; 24.4 11 0.00038 24.1 -0.8 35 15-53 58-92 (103)
96 2do4_A Squamous cell carcinoma 24.4 11 0.00039 23.8 -0.7 35 15-53 61-95 (100)
97 2dgt_A RNA-binding protein 30; 24.1 9.7 0.00033 23.9 -1.1 35 15-53 47-81 (92)
98 2dit_A HIV TAT specific factor 23.6 13 0.00043 24.6 -0.7 34 15-52 67-100 (112)
99 2bz2_A Negative elongation fac 23.5 17 0.00058 24.6 0.0 35 15-53 76-110 (121)
100 2rdd_B UPF0092 membrane protei 23.4 1E+02 0.0035 17.0 4.2 11 6-16 6-16 (37)
101 2cpj_A Non-POU domain-containi 23.4 14 0.00047 23.5 -0.5 35 15-53 54-88 (99)
102 2cph_A RNA binding motif prote 23.3 17 0.00057 23.2 -0.0 35 15-53 61-96 (107)
103 3ulh_A THO complex subunit 4; 23.2 10 0.00035 24.4 -1.2 33 15-51 73-105 (107)
104 1whx_A Hypothetical protein ri 23.1 9.2 0.00031 25.3 -1.4 33 15-51 49-81 (111)
105 1x5p_A Negative elongation fac 23.0 13 0.00045 23.5 -0.6 35 15-53 52-86 (97)
106 2lea_A Serine/arginine-rich sp 22.8 13 0.00043 25.6 -0.8 35 15-53 92-126 (135)
107 2kvi_A Nuclear polyadenylated 22.7 13 0.00046 23.5 -0.6 35 15-53 48-82 (96)
108 2dnr_A Synaptojanin-1; RRM dom 22.6 10 0.00036 25.7 -1.2 32 16-52 53-84 (91)
109 2do0_A HnRNP M, heterogeneous 22.6 12 0.00041 24.3 -0.9 34 15-52 59-92 (114)
110 3n9u_C Cleavage and polyadenyl 22.5 13 0.00044 26.5 -0.8 33 15-51 102-134 (156)
111 2cqi_A Nucleolysin TIAR; RNA r 22.3 11 0.00038 24.0 -1.1 35 15-53 58-92 (103)
112 2xnq_A Nuclear polyadenylated 22.1 13 0.00044 23.9 -0.8 35 15-53 60-94 (97)
113 1x4e_A RNA binding motif, sing 22.0 15 0.00052 22.4 -0.5 32 15-50 50-81 (85)
114 2jvo_A Nucleolar protein 3; nu 22.0 16 0.00056 24.0 -0.3 35 15-53 68-102 (108)
115 2ki2_A SS-DNA binding protein 21.8 15 0.0005 22.8 -0.6 33 15-52 46-78 (90)
116 2dgs_A DAZ-associated protein 21.6 18 0.00063 22.8 -0.1 34 15-53 55-88 (99)
117 4a8x_A RNA-binding protein wit 21.5 12 0.0004 22.9 -1.1 34 15-52 50-83 (88)
118 1spf_A Pulmonary surfactant-as 21.5 83 0.0028 17.6 2.6 13 3-15 10-22 (35)
119 1as5_A Conotoxin Y-PIIIE; neur 21.5 54 0.0018 17.2 1.7 18 99-118 4-23 (26)
120 1sjr_A Polypyrimidine tract-bi 21.3 19 0.00064 26.6 -0.2 35 15-53 87-123 (164)
121 3r27_A HnRNP L, heterogeneous 21.2 6.7 0.00023 26.6 -2.5 36 15-52 60-95 (100)
122 1wf1_A RNA-binding protein RAL 20.7 13 0.00043 24.2 -1.1 35 15-53 65-99 (110)
123 1nu4_A U1A RNA binding domain; 20.6 15 0.0005 23.0 -0.8 34 15-52 54-87 (97)
124 1jmt_A Splicing factor U2AF 35 20.4 15 0.00052 24.2 -0.7 30 16-49 72-101 (104)
125 3vgi_A Endoglucanase A; beta-j 20.2 22 0.00075 29.1 0.0 17 1-17 1-17 (319)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=77.36 E-value=1.3 Score=37.16 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.|.+..+|+.++++++ .. ++....+.|+.++.
T Consensus 147 aFV~F~~~e~A~~Ai~~ln-g~---~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 147 AFIEYEHERDMHSAYKHAD-GK---KIDGRRVLVDVERG 181 (437)
T ss_pred EEEeeccHHHHHHHHHHcC-CC---EECCEEEEEEEeCC
Confidence 5677888888888888777 32 45667777777653
No 2
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.45 E-value=0.93 Score=31.35 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.|.+..+|+.+.++++ .+ ++.++.+.|+.++.
T Consensus 49 AfV~F~~~esA~~A~~~l~-G~---~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 49 AILRFINQDSAERAQKRME-NE---DVFGNRIIVSFTPK 83 (96)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---CSSSSCCEEESSCC
T ss_pred EEEEECCHHHHHHHHHHhc-CC---ccCCceEEEEecCC
Confidence 3567788888898888888 44 57888999998875
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=65.64 E-value=1.2 Score=31.28 Aligned_cols=35 Identities=14% Similarity=-0.030 Sum_probs=24.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 84 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 84 CFVEYYSRADAENAMRYIN-GT---RLDDRIIRTDWDAG 118 (156)
T ss_dssp EEEEESSHHHHHHHHHHTT-TS---EETTEECEEEEESC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCeEEEEEECCC
Confidence 3577888888888888776 22 45667788877654
No 4
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=68.71 E-value=1.3 Score=29.46 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=25.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 60 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 60 ATVSFDDPPSAKAAIDWFD-GK---EFSGNPIKVSFATR 94 (116)
Confidence 6788888888888887766 32 45677788887655
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=60.58 E-value=2.6 Score=28.70 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=24.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 87 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 87 GFVKFQSGSSAQQAIAGLN-GF---NILNKRLKVALAAS 121 (139)
T ss_dssp EEEEESSHHHHHHHHHHTT-TE---ECSSCEEEEEESSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCeEEEEEECCC
Confidence 3567778888888888776 32 45667777776654
No 6
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.79 E-value=4 Score=25.72 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=25.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. .+..+.+.|+.++.
T Consensus 50 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 50 GFITFSDSECARRALEQLN-GF---ELAGRPMRVGHVTE 84 (95)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---CSSSSCCEEEESSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eeCCcEEEEEEccc
Confidence 4567788888888888776 32 45677888887765
No 7
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.35 E-value=3.1 Score=26.68 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=25.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCccC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYN 54 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~g 54 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++..
T Consensus 57 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 57 GFVDFNSEEDAKAAKEAME-DG---EIDGNKVTLDWAKPK 92 (102)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---EETTEECEEEECCCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eECCeEEEEEEecCC
Confidence 4567888888888888776 32 466778888877653
No 8
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=56.61 E-value=3.2 Score=26.29 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=23.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++.++.+.|..++.
T Consensus 48 afV~f~~~~~a~~Ai~~l~-g~---~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 48 ALVGVGSEASSKKLMDLLP-KR---ELHGQNPVVTPSNK 82 (90)
T ss_dssp EEECC-CHHHHHHHHHHGG-GS---CSSSCCCEECCC--
T ss_pred EEEEECCHHHHHHHHHHcC-CC---eeCCEEEEEEECCC
Confidence 4567888888888888877 33 56778888876653
No 9
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.35 E-value=4 Score=26.61 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=25.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 64 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 64 AFVEFEDPRDAEDAVYGRD-GY---DYDGYRLRVEFPRS 98 (109)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---EETTEECEEECCCC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCeEEEEEEccc
Confidence 4567888888888888777 32 45677888887765
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=54.21 E-value=2.7 Score=31.79 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhHHHH
Q 032762 4 KVFLMLGLLVSIVLLISSEAAA 25 (134)
Q Consensus 4 K~~llL~l~la~~LlvSSevaA 25 (134)
|+++|.+++|++++|.|+.+-|
T Consensus 29 kk~~la~~al~~l~l~s~~A~A 50 (175)
T 3lay_A 29 NKSAIALIALSLLALSSGAAFA 50 (175)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHh
Confidence 4455444445544444433333
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=54.17 E-value=1.3 Score=29.19 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=25.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.++++ .. ++..+.+.|+.+++
T Consensus 64 afV~f~~~~~A~~Ai~~ln-g~---~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 64 GFVNYVTAKDAERAINTLN-GL---RLQSKTIKVSYARP 98 (99)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEECCB
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEeeC
Confidence 3577888888888888776 33 56777888887664
No 12
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=52.51 E-value=1.9 Score=29.23 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=26.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.++++..|+.+++.++ +. ++..+++.|+.|.
T Consensus 46 aFVey~~~~eA~~Ai~~Ln-~~---~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 46 ALCKYTTREEANKAQMALN-NC---VLANTTIFAESPS 79 (89)
T ss_dssp EEEEESSHHHHHHHHHHHT-TE---EETTEEEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhc-CC---EECCcEEEEEECC
Confidence 3577888888999998887 33 5677888888764
No 13
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=50.52 E-value=3.7 Score=29.15 Aligned_cols=34 Identities=3% Similarity=-0.117 Sum_probs=22.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.++ +++ .+ ++..+.+.|..+..
T Consensus 89 aFV~F~~~e~A~~Al-~~~-g~---~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 89 ADVEFATHEEAVAAM-SKD-RA---NMQHRYIELFLNST 122 (139)
T ss_dssp CEEECSHHHHHHHHT-TCC-SC---SSSSCCCCCEECCC
T ss_pred EEEEeCCHHHHHHHH-hhC-CC---EECCEEEEEEECCC
Confidence 457778877777776 343 22 55677788776554
No 14
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=50.14 E-value=2.3 Score=30.29 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=0.9
Q ss_pred HHHHhhhHHHHHHH
Q 032762 15 IVLLISSEAAARDL 28 (134)
Q Consensus 15 ~~LlvSSevaArel 28 (134)
+|+|+.+.+.|.++
T Consensus 16 ~~~l~~~~~~a~~~ 29 (163)
T 1w5c_T 16 LWQFTMGTALAAEL 29 (163)
T ss_dssp ------------CC
T ss_pred HHHHHhhhHHHHHh
Confidence 33344333445444
No 15
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens}
Probab=50.04 E-value=3.5 Score=30.39 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHHh
Q 032762 1 MGSKVFLMLGLLVSIVLLI 19 (134)
Q Consensus 1 M~sK~~llL~l~la~~Llv 19 (134)
|+|-.+|||.| |.++++
T Consensus 1 m~~~~~~l~~l--a~l~~~ 17 (147)
T 4ank_A 1 MASHRLLLLCL--AGLVFV 17 (147)
T ss_dssp -------------------
T ss_pred CchHHHHHHHH--HHHHhh
Confidence 77765555433 444443
No 16
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=46.57 E-value=2.5 Score=32.17 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=22.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.|.++.+|+.+++.++ .. ++..+.+.|+.+
T Consensus 115 aFV~f~~~~~a~~Ai~~ln-g~---~~~Gr~l~V~~a 147 (229)
T 3q2s_C 115 ALVGVGSEASSKKLMDLLP-KR---ELHGQNPVVTPV 147 (229)
T ss_dssp EEEEESCTTHHHHHHTTST-TS---CBTTBCCEEEEC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---eECCEEeEEEEC
Confidence 4567778778888888776 22 456677777743
No 17
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=43.40 E-value=4.9 Score=25.72 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=22.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.+
T Consensus 66 afV~f~~~~~a~~Ai~~l~-g~---~~~g~~l~V~~A 98 (99)
T 2la6_A 66 ATVSFDDPPSAKAAIDWFD-GK---EFSGNPIKVSFA 98 (99)
T ss_dssp EEEEBSSHHHHHHHHHHHT-TC---BSSSSBCEEEEC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCcEEEEEec
Confidence 3567788888888888776 32 456666766654
No 18
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=41.84 E-value=3.4 Score=28.21 Aligned_cols=35 Identities=23% Similarity=0.157 Sum_probs=25.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 70 aFV~F~~~e~A~~Ai~~ln-g~---~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 70 GALEFPSEEILVEALERLN-NI---EFRGSVITVERDDN 104 (111)
T ss_dssp EEEEESSHHHHHHHHHHTT-TE---EETTEEEEEEESCC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCeEEEEEECCC
Confidence 4567788888999988877 33 56778888876653
No 19
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*
Probab=40.72 E-value=5.9 Score=34.29 Aligned_cols=11 Identities=27% Similarity=-0.206 Sum_probs=0.0
Q ss_pred CchhHHHHHHH
Q 032762 1 MGSKVFLMLGL 11 (134)
Q Consensus 1 M~sK~~llL~l 11 (134)
|-.|.+|+|.|
T Consensus 1 M~~~~~~~~~l 11 (506)
T 1dbg_A 1 MKMLNKLAGYL 11 (506)
T ss_dssp -----------
T ss_pred CchHHHHHHHH
Confidence 76666654333
No 20
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.55 E-value=6.9 Score=26.70 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=25.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++.+ ..++.++++.|+.++.
T Consensus 55 aFVeF~~~~~A~~Ai~~l~~~--~~~l~Gr~l~V~~A~~ 91 (105)
T 1sjq_A 55 AFIEMNTEEAANTMVNYYTSV--TPVLRGQPIYIQFSNH 91 (105)
T ss_dssp EEEEESSHHHHHHHHHHHTTS--CCEETTEECCBCCCSS
T ss_pred EEEEECCHHHHHHHHHHhccC--CceECCEEEEEEEcCC
Confidence 467888888888888876521 1156678888887654
No 21
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.30 E-value=4.3 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=26.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 66 afV~f~~~~~A~~Ai~~ln-g~---~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 66 AYVTYIRSEDALRAIQCVN-NV---VVDGRTLKASLGTT 100 (111)
T ss_dssp EEEEESSHHHHHHHHHHHT-TE---EETTEEEEEESCCC
T ss_pred EEEEECcHHHHHHHHHHhC-CC---EECCEEEEEEeccc
Confidence 4677888888898888877 33 46778888887765
No 22
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.15 E-value=3.6 Score=26.43 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.++++++ .. ++..+.+.|+.++.
T Consensus 55 afV~f~~~~~A~~Ai~~l~-g~---~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 55 AVVQMENLQDAIGAVNSLH-RY---KIGSKKILVSLATG 89 (96)
T ss_dssp EEEEESSHHHHHHHHHHHT-TE---EETTEEEEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCeEEEEEEcCC
Confidence 4567778888888888777 33 45677888887654
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=38.68 E-value=3.4 Score=26.52 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=23.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.++++... +..++.+.|+.++.
T Consensus 47 aFV~F~~~~~A~~Ai~~~~~~~---~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 47 AFVEFSHLQDATRWMEANQHSL---NILGQKVSMHYSDP 82 (91)
T ss_dssp EEEECSSHHHHHHHHHTTTTEE---EETTEEEEEECCCS
T ss_pred EEEEecCHHHHHHHHHhcCCCe---EECCEEEEEEEcCC
Confidence 4567888888888877654222 45667777776543
No 24
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=38.66 E-value=3.2 Score=27.37 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+.+.++..+..-..+++.+.|+.++
T Consensus 56 aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 56 AFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp EEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred eEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 45778888888888888773221113466777777665
No 25
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=38.44 E-value=3.8 Score=26.88 Aligned_cols=35 Identities=6% Similarity=-0.107 Sum_probs=24.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccC-----cccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAG-----ETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~-----~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++.. +.+.|+.++.
T Consensus 53 afV~f~~~~~a~~Ai~~l~-g~---~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 53 GVVEFVRKEDMTYAVRKLD-NT---KFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp EEEEESSHHHHHHHHHHSS-SE---EEECTTSCEEEEEEEESSC
T ss_pred EEEEECCHHHHHHHHHHHC-cC---CccCCcCcceEEEEEeCCC
Confidence 4577888888888888777 32 3444 6777877654
No 26
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.30 E-value=4.7 Score=28.24 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccC--cccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAG--ETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~--~~~gVndak~ 53 (134)
+||.|.++.+|+.++++++ .. ++.. +.+.|+.++.
T Consensus 65 aFVef~~~~~A~~A~~~Ln-G~---~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 65 AMVEFESVLCAQKAKAALN-GA---DIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---CCBTTBSEEEEECCSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EecCCCeEEEEEEecC
Confidence 4678888888899988887 33 2333 3566766654
No 27
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.98 E-value=8.9 Score=25.12 Aligned_cols=34 Identities=3% Similarity=-0.121 Sum_probs=22.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++ ++ .. ++..+.+.|..+..
T Consensus 58 afV~F~~~~~a~~Al~-~~-~~---~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 58 ADVEFATHEDAVAAMA-KD-KA---NMQHRYVELFLNST 91 (102)
T ss_dssp EEEECSSSHHHHHHHT-TS-SC---CSSSSCCEEEEECC
T ss_pred EEEEECCHHHHHHHHH-hC-CC---eECCcEEEEEECCC
Confidence 3567788888887774 33 22 56677888876655
No 28
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=37.88 E-value=7.6 Score=23.86 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCc-cccc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGE-TNGV 48 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~-~~gV 48 (134)
+||.+.+..+|+.++++++ .. ++..+ .+.|
T Consensus 50 afV~f~~~~~A~~Ai~~ln-g~---~~~g~~~l~V 80 (81)
T 2krb_A 50 IFLEYASPAHAVDAVKNAD-GY---KLDKQHTFRV 80 (81)
T ss_dssp EEEEESSHHHHHHHHTTSS-SC---CCSSSSCCCC
T ss_pred EEEEECCHHHHHHHHHHhc-Cc---ccCCceeEEe
Confidence 3567778888888887776 32 34555 5554
No 29
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.78 E-value=6.7 Score=24.74 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=23.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++
T Consensus 57 afV~f~~~~~a~~Ai~~l~-g~---~~~g~~l~V~~a~ 90 (96)
T 2e44_A 57 VNVTYSSKDQARQALDKLN-GF---QLENFTLKVAYIP 90 (96)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---BCSSCBCEEEECC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCcEEEEEEcC
Confidence 4567778888888888776 32 4566777776554
No 30
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.51 E-value=16 Score=22.68 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 45 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 45 GFVHIEDKTAAEDAIRNLH-HY---KLHGVNINVEASKN 79 (90)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---BCSSCBCEEECSSC
T ss_pred EEEEECCHHHHHHHHHHhc-CC---ccCCcEEEEEECCC
Confidence 3567778888888888776 32 45667788877654
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=36.86 E-value=4.9 Score=26.95 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++
T Consensus 51 aFV~f~~~~~A~~Ai~~ln-g~---~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 51 ARVLFTSTRGAKETVKNLH-LT---SVMGNIIHAQLDI 84 (110)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEECS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCeEEEEEECC
Confidence 3567888888898888877 33 5677777777654
No 32
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=36.78 E-value=26 Score=20.07 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=5.4
Q ss_pred HHHHHHHHhhh
Q 032762 11 LLVSIVLLISS 21 (134)
Q Consensus 11 l~la~~LlvSS 21 (134)
|+|++.|++||
T Consensus 23 lifvlavlFss 33 (37)
T 3arc_L 23 LILVLALLFSS 33 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 33344556654
No 33
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.37 E-value=9.4 Score=24.86 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 68 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a~~ 102 (113)
T 2cpe_A 68 ATVSYEDPPTAKAAVEWFD-GK---DFQGSKLKVSLARK 102 (113)
T ss_dssp EEEEBSSHHHHHHHHHHHT-TC---EETTEECEEECSSC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---ccCCCEEEEEECCC
Confidence 4577888888888888776 32 45677788887665
No 34
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=36.19 E-value=8 Score=24.68 Aligned_cols=35 Identities=9% Similarity=-0.069 Sum_probs=23.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 66 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 66 CFIKYDTHEQAAVCIVALA-NF---PFQGRNLRTGWGKE 100 (101)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---EETTEECCCCBCCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eECCeEEEEEeccC
Confidence 3566777778888887766 32 45667788876653
No 35
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=36.00 E-value=8.2 Score=24.04 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=24.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|..++.
T Consensus 51 afV~f~~~~~a~~a~~~l~-g~---~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 51 GVVKFESPEVAERACRMMN-GM---KLSGREIDVRIDRN 85 (92)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---CBTTBCCCCEECSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCcEEEEEEcCC
Confidence 3566778888888888776 32 45667777776654
No 36
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.58 E-value=4.2 Score=28.07 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=25.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.|.++.+|+.+++.++.. ..++..+++.|+.++
T Consensus 65 aFVef~~~~~A~~Ai~~l~~~--~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 65 AFIEMETREDAMAMVDHCLKK--ALWFQGRCVKVDLSE 100 (112)
T ss_dssp EEEECSSHHHHHHHHHHHHHS--CCCSSSSCCEEEEEC
T ss_pred EEEEECCHHHHHHHHHHhccC--CceECCEEEEEEECc
Confidence 467888888889888876521 114677788887654
No 37
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.40 E-value=7.9 Score=24.65 Aligned_cols=35 Identities=20% Similarity=0.120 Sum_probs=24.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 59 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 59 AFLHYPDSAAAQQAVSCLQ-GL---RLGTDTLRVALARQ 93 (97)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---CSSSSCCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCcEEEEEEcCC
Confidence 3567778888888888776 32 45667777776653
No 38
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.99 E-value=11 Score=23.92 Aligned_cols=35 Identities=20% Similarity=0.051 Sum_probs=24.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCcccc--CcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVA--GETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~--~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.++++ .. ++. .+.+.|+.++.
T Consensus 56 afV~f~~~~~A~~A~~~l~-g~---~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 56 AYIQYESLDAAQAACAKMR-GF---PLGGPDRRLRVDFAKS 92 (97)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---BCSSSSCBCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHHC-CC---EeCCCCcEEEEEECCC
Confidence 3567788888888888776 32 345 67788877665
No 39
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=34.92 E-value=8.6 Score=25.68 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 51 afV~F~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 51 AFITFENPADAKNAAKDMN-GK---SLHGKAIKVEQAKK 85 (116)
T ss_dssp EEEECSSHHHHHHHHHHCS-SC---BCSSSBCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEECCC
Confidence 4577888888888888776 32 45667788877654
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.88 E-value=4.8 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=21.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.+
T Consensus 61 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a 93 (94)
T 2e5h_A 61 AFILFLDKDSAQNCTRAIN-NK---QLFGRVIKASIA 93 (94)
T ss_dssp EEEEESCHHHHHHHHHHTT-TE---EETTEEEEEEEC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---eeCCcEEEEEec
Confidence 4567788888888888776 32 445566666544
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=34.36 E-value=5.5 Score=24.44 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=21.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.+
T Consensus 52 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a 84 (85)
T 3mdf_A 52 AFVEFELAEDAAAAIDNMN-ES---ELFGRTIRVNLA 84 (85)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEEC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCcEEEEEEc
Confidence 3567778888888887766 32 445566666543
No 42
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=34.27 E-value=4.4 Score=27.30 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=25.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.|.++.+|+.+++.++.. ..++..+.+.|+.++
T Consensus 55 aFVef~~~~~A~~Ai~~l~~~--~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 55 AFIEMATTEDAQAAVDYYTTT--PALVFGKPVRVHLSQ 90 (102)
T ss_dssp EEEEESSHHHHHHHHHHHHHS--CCEETTEECEEEEEC
T ss_pred EEEEECCHHHHHHHHHHHcCC--CceECCcEEEEEECC
Confidence 568888888899988877621 114677788887765
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.18 E-value=13 Score=23.24 Aligned_cols=35 Identities=20% Similarity=0.042 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. .+..+.+.|+.++.
T Consensus 51 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 51 AFINFASFDASDAAIEAMN-GQ---YLCNRPITVSYAFK 85 (96)
T ss_dssp EEEEBSSHHHHHHHHHTTT-TC---EETTEECEEEESCC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEecc
Confidence 4567888888888888776 32 45667777776654
No 44
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=32.68 E-value=7.3 Score=24.45 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++..|+.+++.++ .. ++..+.+.|+.++
T Consensus 60 afV~f~~~~~a~~Ai~~l~-g~---~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 60 AMVAFESRDEATAAVIDLN-DR---PIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eECCcEEEEEecc
Confidence 3567778888888888766 22 4566777777654
No 45
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.05 E-value=7.1 Score=24.90 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 57 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 57 GFVTFENIDDAKDAMMAMN-GK---SVDGRQIRVDQAGK 91 (102)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---CTTSCCCEEEEEEC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCeEEEEEECCC
Confidence 4567788888888888776 32 45667777776654
No 46
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=32.01 E-value=8.8 Score=25.54 Aligned_cols=19 Identities=5% Similarity=-0.095 Sum_probs=15.1
Q ss_pred HHHHhhhHHHHHHHHHhcc
Q 032762 15 IVLLISSEAAARDLAETSN 33 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~ 33 (134)
+||.+.++.+|+.++++++
T Consensus 54 afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 54 GVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp EEEEESSHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHhC
Confidence 4567788888898888877
No 47
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.89 E-value=9.8 Score=24.35 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=24.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 60 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 60 GFVEFLSEEDADYAIKIMD-MI---KLYGKPIRVNKASA 94 (105)
T ss_dssp EEEEESSHHHHHHHHHHSS-SC---BCSSCBCEEEETTT
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eECCeEEEEEECCC
Confidence 4577888888888888776 32 45667777776654
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.80 E-value=13 Score=23.48 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcc----cccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGET----NGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~----~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. .+..+. +.|+.++.
T Consensus 55 afV~f~~~~~a~~A~~~l~-g~---~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 55 CFVEFADLATAEKCLHKIN-GK---PLPGATPAKRFKLNYATY 93 (99)
T ss_dssp EEEECSCHHHHHHHHHTTT-TS---EESSCSSCEECCEEETTC
T ss_pred EEEEeCCHHHHHHHHHHHc-CC---ccCCCCcceeEEEeecCC
Confidence 3567788888888888776 32 455566 77877765
No 49
>2cvc_A Cytochrome CC3, high-molecular-weight cytochrome C precursor; electron transport; HET: HEM; 2.00A {Desulfovibrio vulgaris} SCOP: a.138.1.1 PDB: 1gws_A* 1h29_A*
Probab=31.19 E-value=10 Score=32.65 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=0.0
Q ss_pred Cc-hhHHHH
Q 032762 1 MG-SKVFLM 8 (134)
Q Consensus 1 M~-sK~~ll 8 (134)
|. .|++|.
T Consensus 1 m~~~kr~~~ 9 (545)
T 2cvc_A 1 MRNGRTLLR 9 (545)
T ss_dssp ---------
T ss_pred CCccchhHH
Confidence 54 566553
No 50
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.02 E-value=7.5 Score=24.42 Aligned_cols=36 Identities=19% Similarity=0.066 Sum_probs=24.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.++++++ . +.++..+.+.|+.++.
T Consensus 47 afV~f~~~~~A~~A~~~l~-g--~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 47 AFVDYPDQNWAIRAIETLS-G--KVELHGKIMEVDYSVS 82 (93)
T ss_dssp EEECCSCHHHHHHHHHHHT-T--TCEETTEECEEEECCC
T ss_pred EEEEECCHHHHHHHHHHcc-C--CeeECCEEEEEEEccC
Confidence 3567788888888888777 3 0145677788877655
No 51
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=30.39 E-value=6.5 Score=26.17 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=25.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 67 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 67 TLVEYETYKEAQAAMEGLN-GQ---DLMGQPISVDWCFV 101 (126)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---BSSSSBCEEEESEE
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eeCCeEEEEEEecC
Confidence 4567888888888888776 32 45677788877654
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.32 E-value=8.1 Score=24.15 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. .+..+.+.|..++.
T Consensus 60 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 60 AFVYFENVDDAKEAKERAN-GM---ELDGRRIRVSGPSS 94 (95)
T ss_dssp EEEEESSHHHHHHHHHHHT-TE---EETTEEEEEECCSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEecCC
Confidence 3567778888888888776 22 45667777776653
No 53
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=30.28 E-value=10 Score=26.29 Aligned_cols=35 Identities=9% Similarity=0.145 Sum_probs=24.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.++++++ .. ++..+.+.|+.++.
T Consensus 75 aFV~F~~~~~A~~Ai~~ln-g~---~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 75 AYIVFATQESAQAFVEAFQ-GY---PFQGNPLVITFSET 109 (127)
T ss_dssp EEEEESSHHHHHHHHHHST-TC---CCTTSCCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHHC-CC---EeCCCEEEEEEccC
Confidence 4567777788888888877 33 45677777776543
No 54
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=30.28 E-value=8.8 Score=25.29 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. .+..+.+.|..++.
T Consensus 71 afV~F~~~~~A~~Ai~~l~-g~---~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 71 GFITFSDSECAKKALEQLN-GF---ELAGRPMKVGHVTE 105 (108)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---CSSSSCCEEECSCS
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEccc
Confidence 3567788888888888776 32 45667777776653
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.25 E-value=16 Score=23.23 Aligned_cols=35 Identities=6% Similarity=-0.031 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCcc-ccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGE-VAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~e-v~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. . +..+.+.|+.++.
T Consensus 54 afV~f~~~~~a~~A~~~l~-g~---~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 54 GFVKFTDELEQKRALTECQ-GA---VGLGSKPVRLSVAIP 89 (104)
T ss_dssp EEEEESCHHHHHHHHHHTT-TC---CSSSSSCCCCCBCCC
T ss_pred EEEEECCHHHHHHHHHHcc-CC---cccCCEeEEEEEccC
Confidence 3567788888888888776 22 3 5667777776644
No 56
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=29.94 E-value=13 Score=23.59 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=23.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+ ++ .. ++..+.+.|+.++.
T Consensus 61 afV~f~~~~~a~~A~~-l~-g~---~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 61 GYVDFESAEDLEKALE-LT-GL---KVFGNEIKLEKPKG 94 (101)
T ss_dssp EEEEESSHHHHHHHHH-GG-GC---CBTTBCCEEECCSC
T ss_pred EEEEECCHHHHHHHHh-cC-Cc---EECCcEEEEEEcCC
Confidence 4566777778888887 65 32 45677788887654
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=29.92 E-value=8.2 Score=24.18 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=23.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 60 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 60 GFVCFKHPESVSYAIALLN-GI---RLYGRPINVSGPSS 94 (95)
T ss_dssp EEEEESSTHHHHHHHHHHT-TC---EETTEECEEECCCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCCEEEEEEcCC
Confidence 3567778788888888766 22 45667777776653
No 58
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=29.81 E-value=7.4 Score=26.00 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=24.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+++..+|+.++++++ .. .+.++.+.|+.+
T Consensus 59 ~FV~f~~~~~A~~Ai~~ln-G~---~~~Gr~i~v~~a 91 (105)
T 2pe8_A 59 IFLEFERVESAIKAVVDLN-GR---YFGGRVVKACFY 91 (105)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEEC
T ss_pred EEEEECCHHHHHHHHHHHC-CC---EECCcEEEEEEc
Confidence 3577888888999998887 33 566777777654
No 59
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.71 E-value=7.8 Score=24.53 Aligned_cols=35 Identities=11% Similarity=0.032 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 60 afV~f~~~~~a~~Ai~~l~-g~---~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 60 AMVAFESRDEATAAVIDLN-DR---PIGSRKVKLVLGSG 94 (98)
T ss_dssp EEEEESCHHHHHHHHHHTT-TC---EETTEECEEEESSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eeCCeEEEEEEcCC
Confidence 3567788888888888776 22 45667777776653
No 60
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.60 E-value=8.3 Score=24.68 Aligned_cols=35 Identities=11% Similarity=-0.089 Sum_probs=24.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 60 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 60 AFISFHRREDAARAIAGVS-GF---GYDHLILNVEWAKP 94 (103)
T ss_dssp EEEEESSHHHHHHHHHHTT-TC---EETTEECEEEESSC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---eeCCcEEEEEECCC
Confidence 4577888888888888776 32 45667777776654
No 61
>1oah_A Cytochrome C nitrite reductase; nitrogen cycle, respiratory nitrite ammonification; HET: HEM; 2.3A {Desulfovibrio desulfuricans} SCOP: a.138.1.3
Probab=29.58 E-value=16 Score=31.74 Aligned_cols=6 Identities=17% Similarity=0.418 Sum_probs=2.7
Q ss_pred CccCCC
Q 032762 113 GCRCCS 118 (134)
Q Consensus 113 c~rcc~ 118 (134)
|..|=+
T Consensus 146 C~~CHs 151 (519)
T 1oah_A 146 CWNCKT 151 (519)
T ss_dssp GGTTTC
T ss_pred cccCCC
Confidence 544433
No 62
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=29.06 E-value=10 Score=23.80 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=24.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 56 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 56 AYIEFKSEADAEKNLEEKQ-GA---EIDGRSVSLYYTGE 90 (96)
T ss_dssp EEEEESSHHHHHHHHHHTT-EE---EETTEEEEEEECSS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCeEEEEEEcCC
Confidence 3567788888888888776 32 45667788877654
No 63
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=28.64 E-value=10 Score=24.82 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=24.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 70 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 70 GFVSYDNPVSAQAAIQSMN-GF---QIGMKRLKVQLKRS 104 (115)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---EETTEECEEECCCC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEcCC
Confidence 4567788888888888776 32 45667788877654
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=28.54 E-value=7.2 Score=25.07 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=23.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|+.++
T Consensus 68 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~ 101 (106)
T 1p27_B 68 TLVEYETYKEAQAAMEGLN-GQ---DLMGQPISVDWCF 101 (106)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---BSSSSBCEEEESE
T ss_pred EEEEECCHHHHHHHHHHhc-CC---EECCcEEEEEeec
Confidence 3567788888888888776 32 4566777776554
No 65
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.16 E-value=11 Score=23.84 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=24.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 53 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 87 (98)
T 2cpf_A 53 GFVEYKKPEQAQKALKQLQ-GH---TVDGHKLEVRISER 87 (98)
T ss_dssp EEEEESSHHHHHHHHHHST-TC---EETTEECEEECSSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eeCCeEEEEEEccC
Confidence 3567778888888888776 32 45667777776654
No 66
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.90 E-value=8 Score=24.65 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=24.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. .+..+.+.|+.++.
T Consensus 57 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 57 AFVEFELAEDAAAAIDNMN-ES---ELFGRTIRVNLAKP 91 (102)
T ss_dssp EEECCSSHHHHHHHHHHHT-TE---EETTEEEEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCcEEEEEeCCC
Confidence 4567888888888888776 32 45667777776554
No 67
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.89 E-value=12 Score=23.82 Aligned_cols=35 Identities=23% Similarity=0.038 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. .+..+.+.|..++.
T Consensus 58 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 58 GFVCFSSPEEATKAVTEMN-GR---IVATKPLYVALAQR 92 (103)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---BSSSSBCEEEECSS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCcEEEEEEecc
Confidence 3567788888888888776 32 45667777776544
No 68
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.85 E-value=13 Score=24.12 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 70 afV~f~~~~~a~~Ai~~l~-g~---~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 70 AFITFPNKEIAWQALHLVN-GY---KLYGKILVIEFGKN 104 (115)
T ss_dssp EEEECSSHHHHHHHHHHST-TC---BCSSCBCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCcEEEEEEccC
Confidence 3567778888888888776 32 45677788777654
No 69
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=27.67 E-value=10 Score=24.14 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.++++ .. ++..+.+.|+.++.
T Consensus 40 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 40 AFVEFEDPRDAEDAVRGLD-GK---VICGSRVRVELSTG 74 (101)
T ss_dssp EEEECSSHHHHHHHHHHHH-HS---CSSSCCCEEEESSS
T ss_pred EEEEECCHHHHHHHHHHHC-CC---eECCcEEEEEEccC
Confidence 3567778888888888766 32 45667777776654
No 70
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=27.27 E-value=7.5 Score=23.90 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=22.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.++
T Consensus 51 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 51 GFVSFFNKWDAENAIQQMG-GQ---WLGGRQIRTNWAT 84 (87)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEEEC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCeEEEEEecC
Confidence 3567778888888888776 22 4556666666543
No 71
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=27.11 E-value=9.2 Score=24.72 Aligned_cols=33 Identities=6% Similarity=-0.008 Sum_probs=22.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccC-cccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAG-ETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~-~~~gVnda 51 (134)
+||.+.+..+|+.+++.++ .. ++.. +.+.|+.+
T Consensus 57 afV~f~~~~~A~~Ai~~ln-g~---~~~g~r~l~V~~a 90 (100)
T 3ns6_A 57 LFVECGSMNDAKKIIKSFH-GK---RLDLKHRLFLYTM 90 (100)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---BSSSSCBCEEEES
T ss_pred EEEEECCHHHHHHHHHHhC-Cc---ccCCCeEEEEEEC
Confidence 3567778788888888777 33 4565 67777654
No 72
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=27.05 E-value=17 Score=24.76 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 91 afV~F~~~~~A~~Ai~~ln-g~---~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 91 AFVYFENVDDAKEAKERAN-GM---ELDGRRIRVDFSIT 125 (129)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---CSSSSCCEESCCSS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEecC
Confidence 4577888888888888776 32 45667777776543
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.85 E-value=14 Score=23.46 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=23.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+.+.++ .. .+..+.+.|+.++
T Consensus 53 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 53 GFCEYQDQETALSAMRNLN-GR---EFSGRALRVDNAA 86 (104)
T ss_dssp EEEECSCHHHHHHHHHHSS-SB---SCSSSCBEEEETT
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eeCCcEEEEEeCC
Confidence 3567788888888888776 32 4566667776554
No 74
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.79 E-value=8 Score=25.18 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 64 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 64 SFVRFSTHESAAHAIVSVN-GT---TIEGHVVKCYWGKE 98 (109)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEECCCC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCcEEEEEecCC
Confidence 3567778888888888776 32 45667777776654
No 75
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=26.74 E-value=8.1 Score=24.19 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=22.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|+.++
T Consensus 43 afV~f~~~~~a~~Ai~~l~-g~---~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 43 AFVTLLNGEQAQNAIQMFH-QY---SFRGKDLIVQLQP 76 (88)
T ss_dssp EEECCSCHHHHHHHHHHHT-TE---EETTEEEEEEECC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eECCcEEEEEEcC
Confidence 3567778888888888776 32 4566667776543
No 76
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.74 E-value=9.3 Score=23.86 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 46 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 46 AFVHMEKEADAKAAIAQLN-GK---EVKGKRINVELSTK 80 (90)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---EETTEECEEEESCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCcEEEEEECCC
Confidence 3567788888888888776 32 45667777776654
No 77
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.31 E-value=10 Score=24.16 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=24.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 54 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 54 AFVHFSNREDAVEAMKALN-GK---VLDGSPIEVTLAKP 88 (99)
T ss_dssp EEEEESSHHHHHHHHHHHS-SE---EETTEEEEEECCCC
T ss_pred EEEEeCCHHHHHHHHHHhC-CC---EeCCcEEEEEECCC
Confidence 3567778888888888776 32 45667788877765
No 78
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=26.07 E-value=9.6 Score=23.15 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=22.0
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
||.+.+..+|+.+.+.++ .. ++..+.+.|+.++
T Consensus 47 fV~f~~~~~a~~a~~~l~-g~---~~~g~~l~v~~a~ 79 (83)
T 3md1_A 47 FVSFTSQDDAQNAMDSMQ-GQ---DLNGRPLRINWAA 79 (83)
T ss_dssp EEEESCHHHHHHHHHHHT-TC---EETTEECEEEECC
T ss_pred EEEECCHHHHHHHHHHhc-CC---eeCCcEEEEEecC
Confidence 566778888888887766 22 4556667766554
No 79
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=25.94 E-value=11 Score=24.66 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=23.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 60 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 60 GFVSFFNKWDAENAIQQMG-GQ---WLGGRQIRTNWATR 94 (115)
T ss_dssp EEEEESSHHHHHHHHHHTT-TC---EETTEECEEEESSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEccC
Confidence 3567788888888888776 22 45566677665543
No 80
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.79 E-value=11 Score=23.84 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 53 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 53 AFVTFMFPEHAVKAYAEVD-GQ---VFQGRMLHVLPSTI 87 (99)
T ss_dssp EEEEESSHHHHHHHHHHTT-TE---ESSSCEEEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCcEEEEEEcCC
Confidence 4567788888888887776 32 45566777776544
No 81
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=25.72 E-value=9.8 Score=25.24 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=23.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.++++++ .. ++..+.+.|+.++
T Consensus 48 afV~f~~~~~A~~Ai~~l~-~~---~~~g~~i~V~~a~ 81 (115)
T 4f25_A 48 GFVHFETQEAAERAIEKMN-GM---LLNDRKVFVGRFK 81 (115)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---EETTEECEEEESS
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEECC
Confidence 4677888888888888776 32 4556666666543
No 82
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.70 E-value=9.6 Score=24.28 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=24.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 56 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 56 AFIEFASFEDAKEALNSCN-KR---EIEGRAIRLELQGP 90 (101)
T ss_dssp EEEECSSHHHHHHHHHHTS-SE---EETTEEEEEEECSS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCeEEEEEEcCC
Confidence 3567788888888888776 32 45667777776654
No 83
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=25.60 E-value=10 Score=23.98 Aligned_cols=35 Identities=3% Similarity=-0.041 Sum_probs=23.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 47 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 47 AFIEFRDLESSASAVRNLN-GY---QLGSRFLKCGYSSN 81 (96)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEECSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eECCeEEEEEEcCC
Confidence 3567788888888888776 22 45566777766543
No 84
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.55 E-value=8.1 Score=26.84 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++.. ..++..+++.|+.++.
T Consensus 70 AFVeF~~~e~A~~Ai~~l~~~--~~~l~Gr~l~V~~a~~ 106 (119)
T 2ad9_A 70 AFIEMNTEEAANTMVNYYTSV--TPVLRGQPIYIQFSNH 106 (119)
T ss_dssp EEEECSCHHHHHHHHHHHHHH--CCCBTTBCCEEEECSS
T ss_pred EEEEECCHHHHHHHHHHhccC--CceECCeEEEEEEccC
Confidence 467888888888888876521 1145677788776653
No 85
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.54 E-value=13 Score=23.36 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=23.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++ ++ .. ++..+.+.|+.+..
T Consensus 48 afV~f~~~~~a~~ai~-l~-g~---~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 48 AIVEMGDVGAREAVLS-QS-QH---SLGGHRLRVRPREQ 81 (94)
T ss_dssp EEEEESSHHHHHHHHT-CS-CC---EETTEECCCBCSCC
T ss_pred EEEEECCHHHHHHHHh-cC-Ce---EECCEEEEEEECCc
Confidence 4567788888888887 65 32 45667777776543
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=25.39 E-value=8.2 Score=25.36 Aligned_cols=33 Identities=12% Similarity=0.003 Sum_probs=21.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.+
T Consensus 85 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~V~~a 117 (118)
T 2khc_A 85 GFVSFDNPDSAQVAIKAMN-GF---QVGTKRLKVQLK 117 (118)
T ss_dssp EEEEEESSHHHHHHHHHCC-CC---EETTEECCEEEC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEec
Confidence 3567778788888888776 22 455666666543
No 87
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=25.25 E-value=15 Score=25.91 Aligned_cols=10 Identities=20% Similarity=0.026 Sum_probs=0.0
Q ss_pred CchhHHHHHH
Q 032762 1 MGSKVFLMLG 10 (134)
Q Consensus 1 M~sK~~llL~ 10 (134)
|+.+.+++|.
T Consensus 1 M~m~~~~~ll 10 (233)
T 3bqu_C 1 MTMFSLALLL 10 (233)
T ss_dssp ----------
T ss_pred CcchHHHHHH
Confidence 6555444433
No 88
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.11 E-value=8.5 Score=24.63 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|..++.
T Consensus 58 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 58 AFVRFHDRRDAQDAEAAMD-GA---ELDGRELRVQVARY 92 (103)
T ss_dssp EEEEESSSSHHHHHHHHHS-SC---CBTTBCCEEEECSS
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCcEEEEEECCc
Confidence 4567777778888888776 32 45667777776654
No 89
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.10 E-value=6.7 Score=26.10 Aligned_cols=37 Identities=11% Similarity=0.060 Sum_probs=24.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++.. ..++..+.+.|+.++.
T Consensus 54 aFVef~~~~~A~~Ai~~l~~~--~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 54 AFLELATEEAAITMVNYYSAV--TPHLRNQPIYIQYSNH 90 (101)
T ss_dssp EEEEESSHHHHHHHHHHHHHS--CCEETTEECEEEECSC
T ss_pred EEEEECCHHHHHHHHHHhccC--CceECCcEEEEEEcCc
Confidence 467788888888888765421 1145667777776543
No 90
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=24.99 E-value=9 Score=25.52 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=24.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++.. ..++..+.+.|+.++.
T Consensus 54 aFVef~~~~~A~~Ai~~l~~~--~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 54 ALVEFENIDSAKECVTFAADV--PVYIAGQQAFFNYSTS 90 (104)
T ss_dssp EEEEESSHHHHHHHHHHHHHS--CCBSSSSBCEEEECSS
T ss_pred EEEEECCHHHHHHHHHHhccC--CceECCEEEEEEEccC
Confidence 467788888888888876521 1135667777776543
No 91
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=24.93 E-value=9.2 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=22.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 48 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 48 AFIHFDERDGAVKAMEEMN-GK---DLEGENIEIVFAKP 82 (103)
T ss_dssp EEEEESSHHHHHHHHHHHT-TE---EETTEEEEEEECCC
T ss_pred EEEEeCCHHHHHHHHHHHC-CC---ccCCCEEEEEEcCC
Confidence 3567788888888888766 22 34556666665543
No 92
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=24.92 E-value=15 Score=23.43 Aligned_cols=35 Identities=14% Similarity=0.027 Sum_probs=22.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccC---cccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAG---ETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~---~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. .+.. +.+.|+.++.
T Consensus 59 afV~f~~~~~A~~Ai~~l~-g~---~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 59 AFVKFSSHTEAQAAIHALH-GS---QTMPGASSSLVVKFADT 96 (105)
T ss_dssp EEEEESSHHHHHHHHHHHS-SC---CCCTTCSSCCEEEESCS
T ss_pred EEEEeCCHHHHHHHHHHHc-CC---ccCCCCCccEEEEECcc
Confidence 3567788888888888776 32 2343 6677766543
No 93
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=24.86 E-value=7.5 Score=25.92 Aligned_cols=32 Identities=9% Similarity=0.015 Sum_probs=23.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDD 50 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnd 50 (134)
+||.+++..+|+.++++++ .. .+..+.+.|..
T Consensus 62 ~fV~f~~~~~A~~Ai~~ln-G~---~f~GR~i~v~~ 93 (105)
T 3v4m_A 62 IFVEFTSVFDCQKAMQGLT-GR---KFANRVVVTKY 93 (105)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEE
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCCEEEEEE
Confidence 3577888888999998888 33 56667766653
No 94
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.57 E-value=11 Score=23.02 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.+..+|+.+.+.+.... ....+.+.|+.+
T Consensus 51 afV~f~~~~~A~~a~~~l~~~~---~~~g~~l~v~~a 84 (85)
T 2ytc_A 51 AFIQFATRQAAEVAAEKSFNKL---IVNGRRLNVKWG 84 (85)
T ss_dssp EEEEESSHHHHHHHHHTTTTTC---EETTEECCEEEC
T ss_pred EEEEECCHHHHHHHHHHhcCCe---eECCCEEEEEec
Confidence 3566778788888887662122 445566666544
No 95
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.40 E-value=11 Score=24.08 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=23.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 58 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 58 GFVTFENSADADRAREKLH-GT---VVEGRKIEVNNATA 92 (103)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---EETTEECEEEECCS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEccc
Confidence 4567788888888887766 22 45666777776544
No 96
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.38 E-value=11 Score=23.84 Aligned_cols=35 Identities=9% Similarity=-0.002 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|..++.
T Consensus 61 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 61 AYVEYENESQASQAVMKMD-GM---TIKENIIKVAISNS 95 (100)
T ss_dssp EEEEESSHHHHHHHHHHHT-TE---ESSSCEEEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEECCC
Confidence 3567778888888887776 22 45667777776654
No 97
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.11 E-value=9.7 Score=23.88 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=24.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.++++++ .. ++..+.+.|+.++.
T Consensus 47 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 47 AFVHMERAEDAVEAIRGLD-NT---EFQGKRMHVQLSTS 81 (92)
T ss_dssp EEEEESCHHHHHHHHHHHT-TE---EETTEEEEEEESSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eeCCcEEEEEEccC
Confidence 3567778888888888776 32 45667777777654
No 98
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.63 E-value=13 Score=24.56 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=23.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++.+|+.+++.++ .. .+..+.+.|+.++
T Consensus 67 afV~f~~~~~A~~Ai~~ln-g~---~~~gr~l~v~~a~ 100 (112)
T 2dit_A 67 ASVSFRDPEEADYCIQTLD-GR---WFGGRQITAQAWD 100 (112)
T ss_dssp EEEECSCHHHHHHHHHHST-TC---EETTEECEEEECC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCcEEEEEEeC
Confidence 3567778888888888777 32 4566777776554
No 99
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=23.55 E-value=17 Score=24.56 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.++++++ .. ++..+.+.|+.++.
T Consensus 76 aFV~f~~~~~A~~Ai~~ln-g~---~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 76 AFVTYEKMESADQAVAELN-GT---QVESVQLKVNIARK 110 (121)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---BCSSCBCEEEECCS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCeEEEEEEeCC
Confidence 4567788888888888776 32 45667777776654
No 100
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.43 E-value=1e+02 Score=16.97 Aligned_cols=11 Identities=36% Similarity=0.380 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 032762 6 FLMLGLLVSIV 16 (134)
Q Consensus 6 ~llL~l~la~~ 16 (134)
+|.+++++++|
T Consensus 6 ~l~~v~~~~if 16 (37)
T 2rdd_B 6 ILMLVVFGLIF 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.38 E-value=14 Score=23.48 Aligned_cols=35 Identities=11% Similarity=-0.019 Sum_probs=23.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 54 afV~f~~~~~a~~a~~~l~-g~---~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 54 GFIRLETRTLAEIAKVELD-NM---PLRGKQLRVRFACH 88 (99)
T ss_dssp EEEECSSSHHHHHHHHHHT-TC---CBTTBCCEEEESSC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCceEEEEEcCC
Confidence 3566777788888887776 32 45667777776554
No 102
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.33 E-value=17 Score=23.19 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=23.8
Q ss_pred HHHHhhhHHHHHHHHHhc-cccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETS-NDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~-~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.+ + .. ++..+.+.|+.++.
T Consensus 61 afV~f~~~~~a~~A~~~l~~-~~---~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 61 GFVDFITKQDAKKAFNALCH-ST---HLYGRRLVLEWADS 96 (107)
T ss_dssp EEEEESSHHHHHHHHHHHHT-CC---BSSSCBCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhcc-CC---eECCCEEEEEeCCC
Confidence 356778888888888877 4 22 45667777776544
No 103
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=23.16 E-value=10 Score=24.37 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=21.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.+
T Consensus 73 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a 105 (107)
T 3ulh_A 73 ADVHFERKADALKAMKQYN-GV---PLDGRPMNIQLV 105 (107)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEEE
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCcEEEEEEe
Confidence 3567778888888888776 22 455566666543
No 104
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.13 E-value=9.2 Score=25.34 Aligned_cols=33 Identities=9% Similarity=-0.099 Sum_probs=22.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.+..+|+.+++.++ .. .+..+.+.|+.+
T Consensus 49 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a 81 (111)
T 1whx_A 49 AIVEFLEPLEARKAFRHLA-YS---KFHHVPLYLEWA 81 (111)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---BSSSSBCEEEEE
T ss_pred EEEEeCCHHHHHHHHHHhC-CC---EECCeEEEEEEC
Confidence 4577788888888888777 32 345566666544
No 105
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.00 E-value=13 Score=23.52 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=23.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 52 afV~f~~~~~a~~Ai~~l~-g~---~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 52 AFVTYEKMESADQAVAELN-GT---QVESVQLKVNIARK 86 (97)
T ss_dssp EEEEESSHHHHHHHHHHTT-TE---EETTEEEEEECCSS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---eECCeEEEEEECCC
Confidence 3567778888888887776 22 45667777776654
No 106
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=22.84 E-value=13 Score=25.65 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 92 afV~F~~~~~A~~Ai~~l~-g~---~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 92 AFVRFHDKRDAEDAMDAMD-GA---VLDGRELRVQMARY 126 (135)
T ss_dssp CEEECSCHHHHHHHHTTTT-TC---CSSSSCCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEECCC
Confidence 4577788888888887766 22 45667777776654
No 107
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=22.73 E-value=13 Score=23.52 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. .+..+.+.|+.++.
T Consensus 48 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 48 GFIQFDNPQSVRDAIECES-QE---MNFGKKLILEVSSS 82 (96)
T ss_dssp EEEEESCHHHHHHHHHHHT-CS---SCBTTTBCEEEEEC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---eeCCcEEEEEEcCc
Confidence 3567788888888888776 32 45567777776543
No 108
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.60 E-value=10 Score=25.70 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=23.5
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
||++.+.++|..+++ ++ .. ++..+..+|+.++
T Consensus 53 fVtF~d~~sAlaAi~-mn-G~---~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 53 WVTFLEGSSALNVLS-LN-GK---ELLNRTITIALKS 84 (91)
T ss_dssp EEEESSHHHHHHGGG-GT-TC---EETTEEEEEEECC
T ss_pred EEEECChHHHHHHHh-cC-Ce---EeCCeEEEEEeCC
Confidence 567777888888877 66 33 5678888888765
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.60 E-value=12 Score=24.27 Aligned_cols=34 Identities=12% Similarity=-0.046 Sum_probs=22.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.++
T Consensus 59 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~ 92 (114)
T 2do0_A 59 GTVTFEQSIEAVQAISMFN-GQ---LLFDRPMHVKMDE 92 (114)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEECS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCCEEEEEEcc
Confidence 3567778888888888776 22 4456666666543
No 110
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=22.45 E-value=13 Score=26.47 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|+.+
T Consensus 102 aFV~f~~~~~A~~Ai~~ln-g~---~~~Gr~l~V~~a 134 (156)
T 3n9u_C 102 AEVVVASENSVHKLLELLP-GK---VLNGEKVDVRPA 134 (156)
T ss_dssp EEEEESCHHHHHHHHHHST-TC---EETTEECEEEEC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCeEeEEEEc
Confidence 4567888888888888876 32 566777777755
No 111
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.29 E-value=11 Score=24.05 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. .+..+.+.|+.++.
T Consensus 58 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 58 CFVEFYEHRDAAAALAAMN-GR---KILGKEVKVNWATT 92 (103)
T ss_dssp EEEEESSHHHHHHHHHHHT-TE---EETTEEEEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---CcCCCeEEEEECCC
Confidence 3567778888888888776 32 45567777776654
No 112
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=22.13 E-value=13 Score=23.88 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=23.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+.++ .. .+..+.+.|+.++.
T Consensus 60 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 60 GFIQFDNPQSVRDAIEXES-QE---MNFGKKLILEVSSS 94 (97)
T ss_dssp EEEEESSHHHHHHHHHHHT-TS---EETTEECEEEECCC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEecCC
Confidence 3567778888888888776 22 44566777766543
No 113
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.02 E-value=15 Score=22.43 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=20.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDD 50 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnd 50 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|+.
T Consensus 50 afV~f~~~~~a~~A~~~l~-g~---~~~g~~~~~~~ 81 (85)
T 1x4e_A 50 GFVDFDSPSAAQKAVTALK-AS---GVQAQMAKQSG 81 (85)
T ss_dssp EEEEESCHHHHHHHHHHHH-HH---TCCEESCCSSC
T ss_pred EEEEECCHHHHHHHHHHhc-CC---eEeeEEEeecC
Confidence 3567788888888888776 32 34555555554
No 114
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=21.96 E-value=16 Score=23.97 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=23.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|..++.
T Consensus 68 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 68 AFVEFEEAESAAKAIEEVH-GK---SFANQPLEVVYSKL 102 (108)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---EETTEECEEESCSC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCeEEEEEEecC
Confidence 3567788888888888776 32 45667777776653
No 115
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=21.84 E-value=15 Score=22.76 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=21.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++. |+.+++.++ .. ++..+.+.|+.+.
T Consensus 46 afV~f~~~~-a~~a~~~l~-g~---~~~g~~l~V~~a~ 78 (90)
T 2ki2_A 46 GFVEMQEES-VSEAIAKLD-NT---DFMGRTIRVTEAN 78 (90)
T ss_dssp EEEEECTTH-HHHHHHTSC-SS---CCSSSSCSEEEC-
T ss_pred EEEEECCHH-HHHHHHHhC-CC---EECCeEEEEEEcC
Confidence 356677777 788887776 32 4566777776554
No 116
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.62 E-value=18 Score=22.78 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=23.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.+ ++ .. ++..+.+.|+.++.
T Consensus 55 afV~f~~~~~a~~A~~-~~-~~---~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 55 GFITFEDEQSVDQAVN-MH-FH---DIMGKKVEVKRAEP 88 (99)
T ss_dssp EEEEESSHHHHHHHHH-HC-CC---BSSSCBCEEEECCC
T ss_pred EEEEECCHHHHHHHHH-hC-CC---EECCeEEEEEECCC
Confidence 4567788888888877 54 22 45667777776654
No 117
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=21.50 E-value=12 Score=22.92 Aligned_cols=34 Identities=6% Similarity=0.068 Sum_probs=22.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.+.
T Consensus 50 afV~f~~~~~a~~A~~~l~-g~---~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 50 AYVEFENPDEAEKALKHMD-GG---QIDGQEITATAVL 83 (88)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEEEC
T ss_pred EEEEEecHHHHHHHHHHcC-CC---eECCeEEEEEECC
Confidence 3567778888888888766 32 4566666666543
No 118
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=21.50 E-value=83 Score=17.64 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHH
Q 032762 3 SKVFLMLGLLVSI 15 (134)
Q Consensus 3 sK~~llL~l~la~ 15 (134)
-|++|++.++..+
T Consensus 10 lKrLlivVvVvVl 22 (35)
T 1spf_A 10 LKRLLVVVVVVVL 22 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hheEEEEEeeehh
Confidence 3666665444333
No 119
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=21.46 E-value=54 Score=17.20 Aligned_cols=18 Identities=50% Similarity=1.257 Sum_probs=9.3
Q ss_pred CCCCCCCCCCccCCCcc--CCC
Q 032762 99 YCRYGCCGRGYYGRGCR--CCS 118 (134)
Q Consensus 99 ~c~~gcc~~~~~g~c~r--cc~ 118 (134)
.|-||-|++ |-| |.. ||.
T Consensus 4 cclyg~cr~-~pg-c~~a~cc~ 23 (26)
T 1as5_A 4 CCLYGKCRR-YPG-CSSASCCQ 23 (26)
T ss_dssp SSSTTCCCC-CTT-CTTCCCSC
T ss_pred ceecccccc-CCC-cchhhhhc
Confidence 355665543 555 542 553
No 120
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=21.28 E-value=19 Score=26.60 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccC--cccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAG--ETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~--~~~gVndak~ 53 (134)
+||.+.++.+|++++++++ .. ++.. +.+.|+.++.
T Consensus 87 AFVeF~d~~~A~~Ai~~Ln-G~---~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 87 ALLQYADPVSAQHAKLSLD-GQ---NIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEESCHHHHHHHHHHST-TB---CSSSSCSCEEEEECSS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EecCCCcEEEEEEecC
Confidence 4677888888899888887 33 2322 5566665543
No 121
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=21.20 E-value=6.7 Score=26.60 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=24.1
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++.+|+.+++.++... -...++.+.|+.++
T Consensus 60 AFVef~~~~~A~~Av~~ln~~~--~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 60 ALVEFEDVLGACNAVNYAADNQ--IYIAGHPAFVNYST 95 (100)
T ss_dssp EEEEESSHHHHHHHHHHHHHSC--EEETTEEEEEEECS
T ss_pred EEEEECCHHHHHHHHHHhcCCC--ceeCCcEEEEEecc
Confidence 4677888888898888776221 12456777777654
No 122
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=20.68 E-value=13 Score=24.23 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=23.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.++++ .. ++..+.+.|+.++.
T Consensus 65 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 65 AFVQYSNERHARAAVLGEN-GR---VLAGQTLDINMAGE 99 (110)
T ss_dssp EEEECSSSHHHHHHHHHHT-TC---EETTEECCEEESCC
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCeEEEEEECCC
Confidence 3567778888888887776 22 45667777776653
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=20.56 E-value=15 Score=23.03 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+.+.++ .. .+..+.+.|+.++
T Consensus 54 afV~f~~~~~A~~A~~~l~-g~---~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 54 AFVIFKEVSSATNALRSMQ-GF---PFYDKPMRIQYAK 87 (97)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEECS
T ss_pred EEEEeCCHHHHHHHHHHhC-CC---EECCcEEEEEEcc
Confidence 4567778888888888766 22 3455666666554
No 124
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=20.44 E-value=15 Score=24.24 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=20.4
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccC
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVD 49 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVn 49 (134)
||.+.++.+|+.++++++ .. .+..+.+.|+
T Consensus 72 fV~f~~~~~A~~A~~~ln-g~---~~~Gr~i~v~ 101 (104)
T 1jmt_A 72 YVKFRREEDAEKAVIDLN-NR---WFNGQPIHAE 101 (104)
T ss_dssp EEEESCHHHHHHHHHHHT-TC---EETTEECCEE
T ss_pred EEEECCHHHHHHHHHHHC-CC---EECCEEEEEE
Confidence 456777888888888877 33 4566666654
No 125
>3vgi_A Endoglucanase A; beta-jelly roll fold, hydrolase, carbohydrate/sugar binding; HET: NHE GOL; 1.07A {Pyrococcus furiosus}
Probab=20.17 E-value=22 Score=29.11 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSIVL 17 (134)
Q Consensus 1 M~sK~~llL~l~la~~L 17 (134)
|..|+|+|.-||+.+||
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (319)
T 3vgi_A 1 MSKKKFVIVSILTILLV 17 (319)
T ss_dssp -----------------
T ss_pred CCceeEeHHHHHHHHHH
Confidence 76677777544444443
Done!