Query 032762
Match_columns 134
No_of_seqs 156 out of 233
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 08:45:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032762.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032762hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ppjd2 f.23.11.1 (D:196-241) 64.6 1.6 0.00012 24.9 1.8 13 1-13 9-21 (46)
2 d3cx5d2 f.23.11.1 (D:261-307) 63.4 1.7 0.00013 25.0 1.8 15 1-15 9-23 (47)
3 d1x4aa1 d.58.7.1 (A:9-103) Spl 49.6 1.8 0.00013 26.7 0.2 35 15-53 56-90 (95)
4 d1b7fa1 d.58.7.1 (A:123-204) S 48.9 1.2 9E-05 26.5 -0.7 35 15-53 47-81 (82)
5 d1rk8a_ d.58.7.1 (A:) RNA-bind 47.7 1.2 8.5E-05 27.3 -1.0 35 15-53 52-86 (88)
6 d1x5ua1 d.58.7.1 (A:7-99) Spli 46.4 2 0.00014 26.5 0.0 35 15-53 54-88 (93)
7 d2cpea1 d.58.7.1 (A:353-453) R 44.0 1.4 0.0001 27.1 -1.0 35 15-53 61-95 (101)
8 d2ghpa1 d.58.7.1 (A:116-196) U 42.4 1.8 0.00013 25.7 -0.7 34 15-52 46-79 (81)
9 d1fxla1 d.58.7.1 (A:37-118) Hu 42.1 1.7 0.00013 25.7 -0.8 35 15-53 47-81 (82)
10 d2cpfa1 d.58.7.1 (A:362-446) P 39.2 2.5 0.00018 25.3 -0.4 34 15-52 46-79 (85)
11 d1wg1a_ d.58.7.1 (A:) Probable 38.2 1.3 9.8E-05 27.1 -1.8 34 15-52 43-76 (88)
12 d1x5ta1 d.58.7.1 (A:8-90) Spli 36.8 2.6 0.00019 25.1 -0.6 35 15-53 44-78 (83)
13 d2bz2a1 d.58.7.1 (A:35-113) Ne 36.2 3.6 0.00026 24.4 0.0 33 16-52 43-75 (79)
14 d1cvja1 d.58.7.1 (A:11-90) Pol 36.0 2.1 0.00016 25.5 -1.1 33 15-51 45-77 (80)
15 d2adca1 d.58.7.1 (A:335-443) P 34.7 3 0.00022 25.8 -0.5 34 15-52 43-76 (109)
16 d2h8pc1 f.14.1.1 (C:22-78) Pot 34.4 14 0.0011 21.3 2.7 18 4-21 6-23 (57)
17 d3begb1 d.58.7.1 (B:121-207) S 33.7 4.9 0.00036 24.1 0.4 33 15-51 38-70 (87)
18 d1fjca_ d.58.7.1 (A:) Nucleoli 32.4 4 0.00029 25.0 -0.2 35 16-54 57-91 (96)
19 d2cpza1 d.58.7.1 (A:383-484) C 31.2 4.1 0.0003 25.4 -0.4 35 15-53 63-97 (102)
20 d2cq0a1 d.58.7.1 (A:231-320) E 30.9 2.6 0.00019 25.7 -1.4 35 15-53 53-87 (90)
21 d2cpia1 d.58.7.1 (A:101-189) E 30.5 2.2 0.00016 26.1 -1.7 19 15-33 59-77 (89)
22 d2cqpa1 d.58.7.1 (A:917-1002) 28.8 4.2 0.00031 24.2 -0.6 30 15-48 54-83 (86)
23 d2cpda1 d.58.7.1 (A:223-308) A 28.4 2.9 0.00021 25.1 -1.5 34 16-53 48-81 (86)
24 d1x5oa1 d.58.7.1 (A:8-108) RNA 28.3 8.4 0.00061 23.7 0.8 31 16-50 63-93 (101)
25 d2u2fa_ d.58.7.1 (A:) Splicing 28.1 4.6 0.00033 24.2 -0.5 34 16-53 47-80 (85)
26 d1cvja2 d.58.7.1 (A:91-179) Po 28.0 2.5 0.00018 25.7 -1.9 34 15-52 51-84 (89)
27 d1whwa_ d.58.7.1 (A:) Probable 27.8 4.5 0.00033 24.8 -0.6 35 15-53 53-87 (99)
28 d2axtl1 f.23.31.1 (L:1-37) Pho 27.6 22 0.0016 18.9 2.4 7 15-21 27-33 (37)
29 d2msta_ d.58.7.1 (A:) Neural R 27.5 5.3 0.00039 22.8 -0.3 30 16-50 45-74 (75)
30 d1x5sa1 d.58.7.1 (A:8-97) Cold 26.9 3.3 0.00024 24.9 -1.4 33 15-51 50-82 (90)
31 d2cqba1 d.58.7.1 (A:1-89) Pept 26.8 4 0.00029 24.6 -1.0 35 15-53 50-84 (89)
32 d2cq3a1 d.58.7.1 (A:110-202) R 26.5 4.5 0.00033 24.7 -0.8 35 15-53 54-88 (93)
33 d1p1ta_ d.58.7.1 (A:) Cleavage 26.4 4.8 0.00035 24.8 -0.7 33 15-51 53-85 (104)
34 d2cpha1 d.58.7.1 (A:454-547) P 26.3 5.6 0.00041 24.3 -0.4 35 15-52 54-88 (94)
35 d1no8a_ d.58.7.1 (A:) Nuclear 26.0 3.8 0.00028 24.2 -1.2 33 15-51 44-76 (78)
36 d1wi6a1 d.58.7.1 (A:69-143) Ri 25.6 3.3 0.00024 24.5 -1.6 32 16-51 37-68 (75)
37 d1wf2a_ d.58.7.1 (A:) Heteroge 25.3 5 0.00036 24.9 -0.8 35 15-53 53-87 (98)
38 d1xmeb2 f.17.2.1 (B:3-36) Bact 24.5 37 0.0027 17.4 2.9 9 9-17 17-25 (34)
39 d2cpxa1 d.58.7.1 (A:291-392) R 24.4 7.8 0.00057 23.5 0.1 34 16-53 64-97 (102)
40 d2cqha1 d.58.7.1 (A:2-81) IGF- 23.9 5.8 0.00042 23.4 -0.6 36 15-53 40-75 (80)
41 d1hd0a_ d.58.7.1 (A:) Heteroge 23.4 9.3 0.00068 22.2 0.3 31 15-50 44-74 (75)
42 d1weya_ d.58.7.1 (A:) Calcipre 23.0 3.3 0.00024 26.2 -2.0 35 15-53 49-83 (104)
43 d2cqca1 d.58.7.1 (A:109-191) A 22.9 3.7 0.00027 24.4 -1.7 19 15-33 54-72 (83)
44 d1wg4a_ d.58.7.1 (A:) Splicing 22.5 4.8 0.00035 25.0 -1.3 33 15-51 53-85 (98)
45 d2f9da1 d.58.7.1 (A:12-125) Pr 22.4 5.8 0.00042 24.7 -0.9 33 15-51 49-81 (114)
46 d2axtm1 f.23.35.1 (M:1-36) Pho 22.0 35 0.0025 18.1 2.5 14 7-20 12-25 (36)
47 d1u6fa1 d.58.7.1 (A:1-139) RNA 21.9 7 0.00051 25.3 -0.6 35 15-53 87-121 (139)
48 d2ghpa3 d.58.7.1 (A:206-291) U 20.5 4 0.00029 24.5 -2.0 33 15-52 51-83 (86)
No 1
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=64.64 E-value=1.6 Score=24.91 Aligned_cols=13 Identities=62% Similarity=1.104 Sum_probs=7.0
Q ss_pred CchhHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLV 13 (134)
Q Consensus 1 M~sK~~llL~l~l 13 (134)
|+-|++++|.+++
T Consensus 9 mG~Kv~~~l~~l~ 21 (46)
T d1ppjd2 9 MGLKMLLMMGLLL 21 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4556655555543
No 2
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=63.39 E-value=1.7 Score=24.96 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=8.0
Q ss_pred CchhHHHHHHHHHHH
Q 032762 1 MGSKVFLMLGLLVSI 15 (134)
Q Consensus 1 M~sK~~llL~l~la~ 15 (134)
|+.|++++|.+++++
T Consensus 9 mg~K~~~i~s~l~~~ 23 (47)
T d3cx5d2 9 LGLKTVIILSSLYLL 23 (47)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666665554433
No 3
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.58 E-value=1.8 Score=26.68 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=26.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 56 afV~f~~~e~a~~Ai~~l~-g~---~~~g~~l~V~~a~~ 90 (95)
T d1x4aa1 56 AFVEFEDPRDAEDAVYGRD-GY---DYDGYRLRVEFPRS 90 (95)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---EETTEECEEECCCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEeccC
Confidence 3567888888888888777 33 56778888988875
No 4
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=48.88 E-value=1.2 Score=26.49 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=25.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. .+..+.+.|+.+++
T Consensus 47 afV~f~~~~~A~~ai~~ln-g~---~~~g~~l~v~~a~p 81 (82)
T d1b7fa1 47 AFVDFTSEMDSQRAIKVLN-GI---TVRNKRLKVSYARP 81 (82)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEECCC
T ss_pred ceEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEcCC
Confidence 3577888888888888877 32 45667788887765
No 5
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=47.73 E-value=1.2 Score=27.30 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=25.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+-++.
T Consensus 52 afV~f~~~~~A~~A~~~ln-g~---~l~g~~l~V~~a~~ 86 (88)
T d1rk8a_ 52 ALVEYETHKQALAAKEALN-GA---EIMGQTIQVDWCFV 86 (88)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEESEE
T ss_pred eeEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEecC
Confidence 3577888888888888776 32 56777888877655
No 6
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.39 E-value=2 Score=26.50 Aligned_cols=35 Identities=17% Similarity=0.042 Sum_probs=25.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.++++ .. .+..+.+.|+.++.
T Consensus 54 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~A~~ 88 (93)
T d1x5ua1 54 GFVEFLSEEDADYAIKIMD-MI---KLYGKPIRVNKASA 88 (93)
T ss_dssp EEEEESSHHHHHHHHHHSS-SC---BCSSCBCEEEETTT
T ss_pred eEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEcCC
Confidence 4677888888998888877 33 45677888877654
No 7
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.98 E-value=1.4 Score=27.15 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=26.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.++++++ .. ++..+.+.|..++.
T Consensus 61 afV~f~~~~~a~~Ai~~l~-g~---~~~gr~i~V~~a~~ 95 (101)
T d2cpea1 61 ATVSYEDPPTAKAAVEWFD-GK---DFQGSKLKVSLARK 95 (101)
T ss_dssp EEEEBSSHHHHHHHHHHHT-TC---EETTEECEEECSSC
T ss_pred eeEEecCHHHHHHHHHHhC-CC---EECCEEEEEEEcCC
Confidence 4678888888888888877 32 56778888887754
No 8
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.36 E-value=1.8 Score=25.75 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=24.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+++.++ .. ...++.+.|+-++
T Consensus 46 afV~f~~~e~A~~Ai~~l~-g~---~~~g~~i~V~~a~ 79 (81)
T d2ghpa1 46 AYIDVTSKEDARYCVEKLN-GL---KIEGYTLVTKVSN 79 (81)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---EETTEECEEEECC
T ss_pred eEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEcc
Confidence 3577888888888888776 32 4566777776554
No 9
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.15 E-value=1.7 Score=25.73 Aligned_cols=35 Identities=17% Similarity=0.002 Sum_probs=24.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.++++ .. .+..+.+.|+.+++
T Consensus 47 afv~f~~~~~a~~a~~~l~-g~---~~~g~~l~v~~AkP 81 (82)
T d1fxla1 47 GFVNYIDPKDAEKAINTLN-GL---RLQTKTIKVSYARP 81 (82)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEeeC
Confidence 3567788888888888776 33 45667777776654
No 10
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.15 E-value=2.5 Score=25.28 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=24.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++.+|+.+.+.++ .. ++..+.+.|+-++
T Consensus 46 afV~f~~~~~A~~A~~~~~-~~---~~~g~~i~V~~a~ 79 (85)
T d2cpfa1 46 GFVEYKKPEQAQKALKQLQ-GH---TVDGHKLEVRISE 79 (85)
T ss_dssp EEEEESSHHHHHHHHHHST-TC---EETTEECEEECSS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEECC
Confidence 4678888888888888776 32 4566777777654
No 11
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.19 E-value=1.3 Score=27.12 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=24.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++
T Consensus 43 afV~f~~~~~A~~Ai~~ln-~~---~~~G~~l~V~~a~ 76 (88)
T d1wg1a_ 43 AFVTLLNGEQAQNAIQMFH-QY---SFRGKDLIVQLQP 76 (88)
T ss_dssp EEECCSCHHHHHHHHHHHT-TE---EETTEEEEEEECC
T ss_pred eEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEcC
Confidence 3577888888999888887 33 5677788777654
No 12
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.76 E-value=2.6 Score=25.08 Aligned_cols=35 Identities=20% Similarity=0.042 Sum_probs=24.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.++++ .. .+..+.+.|+.+..
T Consensus 44 afV~f~~~~~a~~Ai~~~~-g~---~~~gr~l~v~~a~~ 78 (83)
T d1x5ta1 44 AFINFASFDASDAAIEAMN-GQ---YLCNRPITVSYAFK 78 (83)
T ss_dssp EEEEBSSHHHHHHHHHTTT-TC---EETTEECEEEESCC
T ss_pred EEEEECCHHHHHHHHHhCC-Cc---EECCEEEEEEEecC
Confidence 3577888888888888776 33 45667777776654
No 13
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.19 E-value=3.6 Score=24.36 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=23.7
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
||.+.+..+|+.+++.++ .. ++..+.+.|+.++
T Consensus 43 fV~f~~~~~A~~Ai~~ln-g~---~~~g~~l~V~~a~ 75 (79)
T d2bz2a1 43 FVTYEKMESADQAVAELN-GT---QVESVQLKVNIAR 75 (79)
T ss_dssp EEECSSHHHHHHHHHHHT-TC---BCSSCBCEEEECC
T ss_pred EEEEcccHHHHHHHHHhC-CC---EECCEEEEEEEec
Confidence 567788888888888877 33 4566777777654
No 14
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.97 E-value=2.1 Score=25.46 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=23.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.+.++|+.+.++++ .. .+..+.+.|+.+
T Consensus 45 aFV~f~~~~~a~~ai~~l~-g~---~~~gr~i~v~~a 77 (80)
T d1cvja1 45 AYVNFQQPADAERALDTMN-FD---VIKGKPVRIMWS 77 (80)
T ss_dssp EEEEESSHHHHHHHHTTST-TC---EETTEECEEEEC
T ss_pred eEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEe
Confidence 3567888888888888776 32 456677777654
No 15
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.72 E-value=3 Score=25.84 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=23.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+.++++ .. .+.++.+.|+.++
T Consensus 43 afV~f~~~~~A~~ai~~ln-g~---~l~g~~l~v~~s~ 76 (109)
T d2adca1 43 ALVQMADGNQAQLAMSHLN-GH---KLHGKPIRITLSK 76 (109)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---BCSSSBCEEECCS
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEECC
Confidence 4577888888888888776 32 4566777777654
No 16
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=34.44 E-value=14 Score=21.34 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 032762 4 KVFLMLGLLVSIVLLISS 21 (134)
Q Consensus 4 K~~llL~l~la~~LlvSS 21 (134)
|.+.++.++++++++++|
T Consensus 6 R~~~~~~~~~~i~i~~~s 23 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGS 23 (57)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 17
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.70 E-value=4.9 Score=24.13 Aligned_cols=33 Identities=3% Similarity=-0.061 Sum_probs=22.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|..+
T Consensus 38 afV~f~~~~~a~~Ai~~l~-g~---~~~g~~i~v~~~ 70 (87)
T d3begb1 38 GVVEFVRKEDMTYAVRKLD-NT---KFRSHEGETAYI 70 (87)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---BCCCTTSCCCBC
T ss_pred eeEEeCCHHHHHHHHHHhC-CC---EECCcEeEEeEE
Confidence 3577888888998888877 33 456666666544
No 18
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}
Probab=32.45 E-value=4 Score=25.02 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=25.8
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCCCccC
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYN 54 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~g 54 (134)
||.+.+.++|+.+.++++ .. .+.++.+.|+.++..
T Consensus 57 fV~f~~~~~A~~A~~~l~-~~---~~~gr~i~V~~a~~k 91 (96)
T d1fjca_ 57 YIEFKSEADAEKNLEEKQ-GA---EIDGRSVSLYYTGEK 91 (96)
T ss_dssp EEEESSHHHHHHHHHHTT-EE---EETTEEEEEEECSSS
T ss_pred EEEeCCHHHHHHHHHHcC-CC---EECCEEEEEEEeCCC
Confidence 467778888888888776 33 567788888877653
No 19
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.22 E-value=4.1 Score=25.35 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=24.8
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.++++++ .. .+..+.+.|+.++.
T Consensus 63 afV~f~~~~~A~~Ai~~ln-g~---~~~g~~i~V~~a~~ 97 (102)
T d2cpza1 63 GFVSYDNPVSAQAAIQSMN-GF---QIGMKRLKVQLKRS 97 (102)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---EETTEECEEECCCC
T ss_pred eEEEeCCHHHHHHHHHHhC-CC---EECCEEEEEEEeCC
Confidence 4567888888888888877 33 45667777776643
No 20
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.85 E-value=2.6 Score=25.66 Aligned_cols=35 Identities=11% Similarity=-0.089 Sum_probs=24.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.++++++ .. ....+.+.|+.+++
T Consensus 53 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~i~v~~akp 87 (90)
T d2cq0a1 53 AFISFHRREDAARAIAGVS-GF---GYDHLILNVEWAKP 87 (90)
T ss_dssp EEEEESSHHHHHHHHHHTT-TC---EETTEECEEEESSC
T ss_pred eeEEECCHHHHHHHHHHhC-CC---EECCEEEEEEeeeC
Confidence 3567788788888888776 32 45667777877664
No 21
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.45 E-value=2.2 Score=26.06 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=15.6
Q ss_pred HHHHhhhHHHHHHHHHhcc
Q 032762 15 IVLLISSEAAARDLAETSN 33 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~ 33 (134)
+||.+.++.+|+.++++++
T Consensus 59 aFV~f~~~~~A~~Ai~~ln 77 (89)
T d2cpia1 59 AYVTYIRSEDALRAIQCVN 77 (89)
T ss_dssp EEEEESSHHHHHHHHHHHT
T ss_pred EEEecccchhHHHHHHHhC
Confidence 3678888888999998887
No 22
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.84 E-value=4.2 Score=24.19 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCccccc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGV 48 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gV 48 (134)
+||.+.++++|+.++++++ .. ....+.+.|
T Consensus 54 afV~f~~~e~a~~Ai~~l~-~~---~l~gr~i~v 83 (86)
T d2cqpa1 54 AMVAFESRDEATAAVIDLN-DR---PIGSRKVKL 83 (86)
T ss_dssp EEEEESCHHHHHHHHHHTT-TC---EETTEECEE
T ss_pred EEEEEcCcHHHHHHHHHcC-CC---EECCEEEEE
Confidence 4577888888998888776 22 344555544
No 23
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.37 E-value=2.9 Score=25.05 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=24.3
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
||.+.+...|+.+.++++ .. .+..+.+.|+.+++
T Consensus 48 fV~f~~~~~A~~Ai~~l~-~~---~i~g~~i~V~~akP 81 (86)
T d2cpda1 48 FVHFSNREDAVEAMKALN-GK---VLDGSPIEVTLAKP 81 (86)
T ss_dssp EEEESSHHHHHHHHHHHS-SE---EETTEEEEEECCCC
T ss_pred EEEeCCHHHHHHHHHHcC-CC---EECCEEEEEEeccC
Confidence 466778888888888776 33 45677788877665
No 24
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.26 E-value=8.4 Score=23.65 Aligned_cols=31 Identities=6% Similarity=-0.034 Sum_probs=20.9
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCC
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDD 50 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnd 50 (134)
||.+.+..+|+.+++.++ +. ++..+...|.-
T Consensus 63 fV~f~~~~~A~~Ai~~ln-g~---~i~gr~~~v~~ 93 (101)
T d1x5oa1 63 FARMESTEKCEAVIGHFN-GK---FIKTPPGVSAP 93 (101)
T ss_dssp EEEESCHHHHHHHHHHHB-TC---CCCCCTTSCCC
T ss_pred eEEeCCHHHHHHHHHHhC-CC---EECCcCCccCC
Confidence 567788888888888877 33 44555555543
No 25
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.09 E-value=4.6 Score=24.23 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=24.1
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 47 FV~f~~~~~A~~a~~~l~-~~---~l~g~~l~V~~A~~ 80 (85)
T d2u2fa_ 47 FCEYVDINVTDQAIAGLN-GM---QLGDKKLLVQRASV 80 (85)
T ss_dssp EEEESSSHHHHHHHHTSS-SC---CCSSSCCEEEECCC
T ss_pred EEEECCHHHHHHHHHHhC-CC---EECCEEEEEEECCC
Confidence 566777788888888776 22 56677788877654
No 26
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.04 E-value=2.5 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=24.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.++.+|+.+.++++ .. .+..+.+.|+.++
T Consensus 51 afV~f~~~~~A~~Ai~~l~-g~---~~~g~~i~V~~a~ 84 (89)
T d1cvja2 51 GFVHFETQEAAERAIEKMN-GM---LLNDRKVFVGRFK 84 (89)
T ss_dssp EEEEESCHHHHHHHTTSSS-EE---EETTEEEEEEECC
T ss_pred eEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEECC
Confidence 4577888888888888776 32 4566777777654
No 27
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.78 E-value=4.5 Score=24.81 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=24.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++..|+.+.+.++ .. ++..+.+.|+-++.
T Consensus 53 afV~f~~~~~a~~A~~~l~-g~---~~~gr~i~V~~a~~ 87 (99)
T d1whwa_ 53 AFVTFMFPEHAVKAYAEVD-GQ---VFQGRMLHVLPSTI 87 (99)
T ss_dssp EEEEESSHHHHHHHHHHTT-TE---ESSSCEEEEEECCC
T ss_pred eEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEECCC
Confidence 3577788888888888776 32 45677777776554
No 28
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=27.62 E-value=22 Score=18.94 Aligned_cols=7 Identities=57% Similarity=0.776 Sum_probs=3.4
Q ss_pred HHHHhhh
Q 032762 15 IVLLISS 21 (134)
Q Consensus 15 ~~LlvSS 21 (134)
+.+|+||
T Consensus 27 l~vLFss 33 (37)
T d2axtl1 27 LALLFSS 33 (37)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3345554
No 29
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.48 E-value=5.3 Score=22.85 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=18.8
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCC
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDD 50 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnd 50 (134)
||.+.++.+|+.+.+ ++ .. .+..+.+.|+.
T Consensus 45 fV~F~~~~~a~~al~-~~-~~---~l~gr~i~V~~ 74 (75)
T d2msta_ 45 FVTFESEDIVEKVCE-IH-FH---EINNKMVECKK 74 (75)
T ss_dssp EEECSCHHHHHHHHH-CS-SC---CBTTBCCEEEE
T ss_pred EEEECCHHHHHHHHh-cC-CC---EECCeEEEEEE
Confidence 467777777777665 44 22 45667776654
No 30
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.89 E-value=3.3 Score=24.93 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=23.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.++.+|+.+.+.++ .. ++.++.+.|+.+
T Consensus 50 afV~f~~~~~a~~Ai~~l~-~~---~~~g~~l~V~~a 82 (90)
T d1x5sa1 50 GFVTFENIDDAKDAMMAMN-GK---SVDGRQIRVDQA 82 (90)
T ss_dssp EEEECSSHHHHHHHHHHHT-TC---CTTSCCCEEEEE
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEc
Confidence 3577888888888888776 33 456677777654
No 31
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.83 E-value=4 Score=24.61 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=24.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.++.+|+.+.++++ .. .+.++.+.|+.+++
T Consensus 50 afV~f~~~~~A~~ai~~l~-~~---~i~g~~l~v~~a~p 84 (89)
T d2cqba1 50 AFVEFELAEDAAAAIDNMN-ES---ELFGRTIRVNLAKP 84 (89)
T ss_dssp EEECCSSHHHHHHHHHHHT-TE---EETTEEEEEEECCC
T ss_pred eEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEeCC
Confidence 4577888888888888776 32 45666777776653
No 32
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.49 E-value=4.5 Score=24.66 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 54 afV~f~~~~~a~~Ai~~l~-~~---~~~g~~l~V~~A~~ 88 (93)
T d2cq3a1 54 GFVTFENSADADRAREKLH-GT---VVEGRKIEVNNATA 88 (93)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---EETTEECEEEECCS
T ss_pred eEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEecCc
Confidence 3567788888888888776 32 56777888887654
No 33
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.39 E-value=4.8 Score=24.84 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.+..+|+.+.+.++ .. .+..+.+.|+-+
T Consensus 53 afV~f~~~~~a~~ai~~l~-~~---~~~g~~i~V~~a 85 (104)
T d1p1ta_ 53 GFCEYQDQETALSAMRNLN-GR---EFSGRALRVDNA 85 (104)
T ss_dssp EEEECSCHHHHHHHHHHSS-SB---SCSSSCBEEEET
T ss_pred eEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEEC
Confidence 3677888888888888776 32 456677777654
No 34
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.28 E-value=5.6 Score=24.28 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=23.7
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.+.+..+|+.+.+.+.... .+.++.+.|+.++
T Consensus 54 afV~f~~~~~A~~Ai~~l~~~~---~~~Gr~l~V~~A~ 88 (94)
T d2cpha1 54 GFVDFITKQDAKKAFNALCHST---HLYGRRLVLEWAD 88 (94)
T ss_dssp EEEEESSHHHHHHHHHHHHTCC---BSSSCBCEEEECC
T ss_pred EEEEECCHHHHHHHHHHccCCc---EECCEEEEEEEcC
Confidence 3577888888888887763132 4667777777654
No 35
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.95 E-value=3.8 Score=24.17 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=21.9
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.++.+|+.+.++++ .. .+..+.+.|+-+
T Consensus 44 afV~f~~~~~A~~Ai~~l~-g~---~l~g~~l~V~~a 76 (78)
T d1no8a_ 44 ADVHFERKADALKAMKQYN-GV---PLDGRPMNIQLV 76 (78)
T ss_dssp EEEEESCHHHHHHHHHHHT-TC---EETTEECEEEEE
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEe
Confidence 3567788888888888776 32 456666666543
No 36
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.64 E-value=3.3 Score=24.47 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=22.3
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
||.+.+..+|+.+.+.++ +. +..++.+.|+-+
T Consensus 37 fv~f~~~~~A~~Ai~~ln-~~---~~~g~~l~V~~a 68 (75)
T d1wi6a1 37 FVTLLNGEQAEAAINTFH-QS---RLRERELSVQLQ 68 (75)
T ss_dssp EEEESSHHHHHHHHHHHT-TE---ESSSCEEEEEEC
T ss_pred EEEECCHHHHHHHHHHhC-Cc---cCCCCEEEEEEe
Confidence 566778888888888887 33 456667766654
No 37
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.26 E-value=5 Score=24.90 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+-++.
T Consensus 53 aFV~f~~~~~A~~Ai~~ln-g~---~~~g~~l~V~~a~~ 87 (98)
T d1wf2a_ 53 AFVQYVNERNARAAVAGED-GR---MIAGQVLDINLAAE 87 (98)
T ss_dssp EEEEESSHHHHHHHHHTTT-TC---EETTEECEEEETTS
T ss_pred EEEEECCHHHHHHHHHHcC-CC---EECCEEEEEEECCC
Confidence 3567788888888888776 33 56777888876654
No 38
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=24.47 E-value=37 Score=17.37 Aligned_cols=9 Identities=11% Similarity=0.504 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 032762 9 LGLLVSIVL 17 (134)
Q Consensus 9 L~l~la~~L 17 (134)
|++.||+++
T Consensus 17 lafslamlf 25 (34)
T d1xmeb2 17 LAFSLAMLF 25 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555533
No 39
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.42 E-value=7.8 Score=23.51 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=23.7
Q ss_pred HHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 16 VLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 16 ~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
||.+.+..+|+.+.+.++ .. ++..+.+.|+.++.
T Consensus 64 fV~f~~~~~A~~Ai~~l~-g~---~~~g~~l~V~~ak~ 97 (102)
T d2cpxa1 64 FITFPNKEIAWQALHLVN-GY---KLYGKILVIEFGKN 97 (102)
T ss_dssp EEECSSHHHHHHHHHHST-TC---BCSSCBCEEEECCC
T ss_pred eEEeccHHHHHHHHHHhC-CC---EECCEEEEEEeCCC
Confidence 466778888888888776 32 45667777776653
No 40
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.91 E-value=5.8 Score=23.45 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=24.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+.++++ .. -++.++.+.|+.+..
T Consensus 40 aFV~f~~~~~A~~Ai~~ln-g~--~~~~G~~i~V~~a~~ 75 (80)
T d2cqha1 40 AFVDYPDQNWAIRAIETLS-GK--VELHGKIMEVDYSVS 75 (80)
T ss_dssp EEECCSCHHHHHHHHHHHT-TT--CEETTEECEEEECCC
T ss_pred EEEEECCHHHHHHHHHHhC-CC--eEECCEEEEEEEcCC
Confidence 4577888888898888876 22 135667777776543
No 41
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.39 E-value=9.3 Score=22.16 Aligned_cols=31 Identities=6% Similarity=0.206 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDD 50 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnd 50 (134)
+||.+.++.+|+.+.+. + .. .++++.+.|..
T Consensus 44 afV~f~~~~~a~~Al~~-~-~~---~l~Gr~i~V~r 74 (75)
T d1hd0a_ 44 GFVLFKESESVDKVMDQ-K-EH---KLNGKVIDPKR 74 (75)
T ss_dssp EEEEESSHHHHHHHHHT-C-CC---CBTTBCCEECC
T ss_pred EEEEECCHHHHHHHHhc-C-CC---EECCCEEEeeE
Confidence 35677888888877763 3 22 45666666653
No 42
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.98 E-value=3.3 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=24.3
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+.++|+.++++++ .. .+..+.+.|+.++.
T Consensus 49 afV~f~~~~~A~~Ai~~ln-g~---~~~g~~l~v~~a~~ 83 (104)
T d1weya_ 49 VRINFSNPLSAADARLRLH-KT---EFLGKEMKLYFAQT 83 (104)
T ss_dssp EEEECSSTTHHHHHHHTST-TS---EETTEECEEECCCC
T ss_pred EEEEECCHHHHHHHHHHhc-cc---ccCCCEeEEeeccc
Confidence 3567777788888888887 33 55667777776543
No 43
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.88 E-value=3.7 Score=24.36 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=14.1
Q ss_pred HHHHhhhHHHHHHHHHhcc
Q 032762 15 IVLLISSEAAARDLAETSN 33 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~ 33 (134)
+||.+.+..+|+.+.++++
T Consensus 54 afV~f~~~~~A~~Ai~~l~ 72 (83)
T d2cqca1 54 AFVYFENVDDAKEAKERAN 72 (83)
T ss_dssp EEEEESSHHHHHHHHHHHT
T ss_pred eEEEECCHHHHHHHHHHcC
Confidence 3567778888888887776
No 44
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.50 E-value=4.8 Score=24.96 Aligned_cols=33 Identities=3% Similarity=-0.081 Sum_probs=22.6
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.++.+|+.+++.++ .. ++..+.+.|..+
T Consensus 53 afV~f~~~~~a~~Ai~~ln-g~---~~~g~~i~v~~~ 85 (98)
T d1wg4a_ 53 GMVEYLRKEDMEYALRKLD-DT---KFRSHEGETSYI 85 (98)
T ss_dssp EEEEESSHHHHHHHHHHHS-SE---EEECTTSCEEEE
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EeCCeEEEEEEE
Confidence 3567888888899888877 33 456666666543
No 45
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.39 E-value=5.8 Score=24.74 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=23.0
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCC
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDA 51 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVnda 51 (134)
+||.+.+..+|+.+++.++ .. ++.++.+.|+.+
T Consensus 49 afV~f~~~~~A~~Ai~~l~-g~---~~~gr~l~V~~a 81 (114)
T d2f9da1 49 AYVVYEDIFDAKNACDHLS-GF---NVCNRYLVVLYY 81 (114)
T ss_dssp EEEEESSHHHHHHHHHHHT-TC---EETTEECEEEEC
T ss_pred EEEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEc
Confidence 4677888888999988887 33 456666666543
No 46
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.03 E-value=35 Score=18.07 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhh
Q 032762 7 LMLGLLVSIVLLIS 20 (134)
Q Consensus 7 llL~l~la~~LlvS 20 (134)
+|++|+..+||+|-
T Consensus 12 ~LFilvPt~FLliL 25 (36)
T d2axtm1 12 ALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555543
No 47
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}
Probab=21.94 E-value=7 Score=25.27 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=25.4
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCcc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKY 53 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak~ 53 (134)
+||.+.+..+|+.+++.++ .. ++..+.+.|+.++.
T Consensus 87 afV~f~~~~~A~~Ai~~ln-g~---~~~gr~l~V~~a~~ 121 (139)
T d1u6fa1 87 GFVKFQSGSSAQQAIAGLN-GF---NILNKRLKVALAAS 121 (139)
T ss_dssp EEEEESSHHHHHHHHHHTT-TE---ECSSCEEEEEESSC
T ss_pred eeEEECCHHHHHHHHHHhC-CC---EECCEEEEEEEcCC
Confidence 4577888888888888776 33 56778888876654
No 48
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.53 E-value=4 Score=24.53 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=21.5
Q ss_pred HHHHhhhHHHHHHHHHhccccccCccccCcccccCCCc
Q 032762 15 IVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAK 52 (134)
Q Consensus 15 ~~LlvSSevaArelaE~~~~~~~k~ev~~~~~gVndak 52 (134)
+||.++++.+|+.+.+ ++ .. ++..+.+.|+-++
T Consensus 51 afV~f~~~~~a~~Al~-~n-~~---~~~gr~l~V~~a~ 83 (86)
T d2ghpa3 51 AFMVFENKDSAERALQ-MN-RS---LLGNREISVSLAD 83 (86)
T ss_dssp EEEEESSHHHHHHHGG-GT-TE---EETTEEEEEEECC
T ss_pred eeEEECCHHHHHHHHh-cC-CC---EECCEEEEEEEcC
Confidence 3567778777777764 54 22 4567777777654
Done!