Query 032763
Match_columns 134
No_of_seqs 139 out of 241
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 08:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032763.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032763hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_7 Plectin/S10 domain cont 100.0 1.7E-41 5.8E-46 264.8 4.1 79 1-87 46-125 (162)
2 3u5c_K 40S ribosomal protein S 100.0 1.1E-37 3.7E-42 229.5 2.1 57 1-57 46-102 (105)
3 1tbx_A ORF F-93, hypothetical 93.9 0.021 7.2E-07 37.5 1.5 34 2-35 48-81 (99)
4 1ub9_A Hypothetical protein PH 93.4 0.027 9.1E-07 36.3 1.3 34 2-35 52-88 (100)
5 3cuo_A Uncharacterized HTH-typ 92.7 0.036 1.2E-06 35.7 1.2 34 2-35 60-93 (99)
6 2oqg_A Possible transcriptiona 92.1 0.053 1.8E-06 35.9 1.5 35 2-36 56-90 (114)
7 3f6v_A Possible transcriptiona 91.3 0.072 2.4E-06 39.0 1.5 35 2-36 93-127 (151)
8 2jsc_A Transcriptional regulat 91.0 0.14 4.6E-06 35.4 2.6 37 2-38 56-93 (118)
9 3f6o_A Probable transcriptiona 90.9 0.085 2.9E-06 36.2 1.5 35 2-36 53-87 (118)
10 3jth_A Transcription activator 90.8 0.063 2.2E-06 35.2 0.8 34 2-35 58-91 (98)
11 2qvo_A Uncharacterized protein 90.5 0.1 3.4E-06 34.4 1.5 34 2-35 52-85 (95)
12 2kko_A Possible transcriptiona 89.8 0.11 3.7E-06 35.3 1.3 34 2-35 60-93 (108)
13 2bv6_A MGRA, HTH-type transcri 89.6 0.12 4.1E-06 34.9 1.4 34 2-35 73-109 (142)
14 2esh_A Conserved hypothetical 88.6 0.16 5.6E-06 35.1 1.5 37 2-38 57-97 (118)
15 3df8_A Possible HXLR family tr 88.4 0.12 3.9E-06 35.6 0.6 30 2-32 65-94 (111)
16 3pqk_A Biofilm growth-associat 88.2 0.12 4.1E-06 34.2 0.6 34 2-35 58-91 (102)
17 1r7j_A Conserved hypothetical 87.4 0.13 4.5E-06 35.1 0.4 29 2-34 42-70 (95)
18 2gxg_A 146AA long hypothetical 87.3 0.2 6.8E-06 33.7 1.3 34 2-35 72-108 (146)
19 2nnn_A Probable transcriptiona 87.2 0.19 6.5E-06 33.5 1.1 34 2-35 74-110 (140)
20 1xma_A Predicted transcription 86.8 0.23 7.9E-06 36.2 1.4 36 2-37 84-124 (145)
21 3bdd_A Regulatory protein MARR 86.7 0.18 6.1E-06 33.7 0.7 30 2-31 67-99 (142)
22 2fbi_A Probable transcriptiona 86.6 0.22 7.4E-06 33.3 1.1 33 2-34 72-107 (142)
23 3oop_A LIN2960 protein; protei 86.0 0.2 6.9E-06 33.9 0.7 34 2-35 73-109 (143)
24 3l7w_A Putative uncharacterize 86.0 0.28 9.6E-06 33.5 1.4 36 2-37 48-87 (108)
25 3f8b_A Transcriptional regulat 85.8 0.3 1E-05 34.0 1.5 36 2-37 55-95 (116)
26 3tgn_A ADC operon repressor AD 85.7 0.15 5.2E-06 34.4 -0.0 34 2-35 73-109 (146)
27 2dql_A PEX protein; circadian 85.7 0.33 1.1E-05 33.9 1.8 35 2-36 64-104 (115)
28 2co5_A Viral protein F93; vira 85.5 0.22 7.6E-06 34.6 0.8 37 2-38 52-88 (99)
29 1z7u_A Hypothetical protein EF 85.4 0.19 6.3E-06 34.3 0.3 32 2-33 58-92 (112)
30 3bja_A Transcriptional regulat 85.3 0.3 1E-05 32.5 1.3 34 2-35 69-105 (139)
31 2rdp_A Putative transcriptiona 85.2 0.28 9.7E-06 33.2 1.2 34 2-35 78-114 (150)
32 2hzt_A Putative HTH-type trans 85.2 0.12 4.2E-06 34.9 -0.7 31 2-32 50-83 (107)
33 2eth_A Transcriptional regulat 85.2 0.27 9.4E-06 33.9 1.1 34 2-35 80-116 (154)
34 2pg4_A Uncharacterized protein 85.0 0.36 1.2E-05 31.5 1.5 33 2-34 53-86 (95)
35 2qww_A Transcriptional regulat 84.9 0.22 7.5E-06 34.0 0.5 36 2-37 77-117 (154)
36 3elk_A Putative transcriptiona 84.8 0.29 9.8E-06 34.4 1.1 37 2-38 55-96 (117)
37 2zkz_A Transcriptional repress 84.8 0.44 1.5E-05 31.8 1.9 34 2-36 63-96 (99)
38 2hr3_A Probable transcriptiona 84.8 0.25 8.6E-06 33.4 0.7 34 2-35 72-108 (147)
39 2a61_A Transcriptional regulat 84.5 0.31 1.1E-05 32.7 1.1 34 2-35 69-105 (145)
40 3bpv_A Transcriptional regulat 84.1 0.23 7.8E-06 33.1 0.2 34 2-35 65-101 (138)
41 1jgs_A Multiple antibiotic res 83.9 0.37 1.3E-05 32.2 1.2 34 2-35 70-106 (138)
42 3eco_A MEPR; mutlidrug efflux 83.6 0.37 1.3E-05 32.3 1.2 34 2-35 69-105 (139)
43 1lj9_A Transcriptional regulat 83.6 0.39 1.3E-05 32.3 1.3 34 2-35 65-101 (144)
44 4esf_A PADR-like transcription 83.2 0.41 1.4E-05 33.6 1.3 38 2-39 52-94 (117)
45 3cjn_A Transcriptional regulat 83.2 0.39 1.3E-05 33.1 1.2 34 2-35 88-124 (162)
46 1yyv_A Putative transcriptiona 83.0 0.27 9.3E-06 34.9 0.3 33 2-34 71-106 (131)
47 3hhh_A Transcriptional regulat 82.9 0.47 1.6E-05 33.3 1.5 36 2-37 54-94 (116)
48 1yg2_A Gene activator APHA; vi 81.9 0.35 1.2E-05 35.6 0.5 39 2-40 45-88 (179)
49 3deu_A Transcriptional regulat 81.3 0.42 1.4E-05 33.9 0.8 34 2-35 90-126 (166)
50 3b73_A PHIH1 repressor-like pr 81.3 0.18 6.3E-06 35.9 -1.1 32 2-36 51-82 (111)
51 3boq_A Transcriptional regulat 81.3 0.35 1.2E-05 33.2 0.3 34 2-35 84-120 (160)
52 1u2w_A CADC repressor, cadmium 81.2 0.38 1.3E-05 33.2 0.5 32 2-33 78-109 (122)
53 2fbh_A Transcriptional regulat 81.2 0.43 1.5E-05 31.9 0.8 34 2-35 74-110 (146)
54 3s2w_A Transcriptional regulat 81.1 0.52 1.8E-05 32.6 1.2 34 2-35 86-122 (159)
55 3g3z_A NMB1585, transcriptiona 80.9 0.33 1.1E-05 32.9 0.1 34 2-35 67-103 (145)
56 2nyx_A Probable transcriptiona 80.7 0.55 1.9E-05 33.1 1.2 33 2-34 81-116 (168)
57 3u2r_A Regulatory protein MARR 80.7 0.61 2.1E-05 32.6 1.4 35 2-36 84-121 (168)
58 2fa5_A Transcriptional regulat 80.1 0.3 1E-05 33.6 -0.3 34 2-35 85-121 (162)
59 4esb_A Transcriptional regulat 79.8 0.65 2.2E-05 32.4 1.3 37 2-38 50-91 (115)
60 1s3j_A YUSO protein; structura 79.8 0.62 2.1E-05 31.7 1.2 34 2-35 73-109 (155)
61 3bj6_A Transcriptional regulat 79.7 0.51 1.7E-05 32.0 0.8 34 2-35 76-112 (152)
62 1r1u_A CZRA, repressor protein 79.7 0.73 2.5E-05 30.8 1.5 33 2-34 61-94 (106)
63 3bro_A Transcriptional regulat 79.4 0.41 1.4E-05 32.0 0.2 34 2-35 72-108 (141)
64 3f3x_A Transcriptional regulat 79.3 0.75 2.6E-05 31.1 1.5 34 2-35 72-108 (144)
65 3u1d_A Uncharacterized protein 79.3 0.55 1.9E-05 35.5 0.9 38 2-39 68-113 (151)
66 3cdh_A Transcriptional regulat 79.3 0.4 1.4E-05 32.8 0.1 34 2-35 79-115 (155)
67 3hsr_A HTH-type transcriptiona 78.9 0.44 1.5E-05 32.4 0.2 34 2-35 72-108 (140)
68 2e1n_A PEX, period extender; c 78.3 0.51 1.7E-05 34.4 0.4 36 2-37 76-117 (138)
69 3e6m_A MARR family transcripti 78.2 0.56 1.9E-05 32.6 0.6 34 2-35 89-125 (161)
70 4hbl_A Transcriptional regulat 78.0 0.49 1.7E-05 32.5 0.2 34 2-35 77-113 (149)
71 2fsw_A PG_0823 protein; alpha- 78.0 0.34 1.2E-05 32.6 -0.6 31 2-32 61-94 (107)
72 3ri2_A Transcriptional regulat 77.6 0.82 2.8E-05 32.6 1.3 35 2-36 60-98 (123)
73 3k0l_A Repressor protein; heli 77.5 0.79 2.7E-05 31.9 1.2 34 2-35 82-118 (162)
74 3l4g_A Phenylalanyl-tRNA synth 77.3 0.47 1.6E-05 42.0 0.0 39 1-42 41-80 (508)
75 3ech_A MEXR, multidrug resista 76.2 0.48 1.6E-05 32.1 -0.3 34 2-35 73-109 (142)
76 2frh_A SARA, staphylococcal ac 76.1 0.57 2E-05 32.0 0.1 34 2-35 75-111 (127)
77 1okr_A MECI, methicillin resis 76.0 0.68 2.3E-05 30.9 0.5 33 2-34 50-83 (123)
78 1sfx_A Conserved hypothetical 75.2 1 3.5E-05 28.5 1.2 34 2-35 56-91 (109)
79 3aaf_A Werner syndrome ATP-dep 75.2 1 3.5E-05 32.6 1.3 40 2-41 75-116 (134)
80 3jw4_A Transcriptional regulat 75.1 0.43 1.5E-05 32.5 -0.7 34 2-35 79-115 (148)
81 2pex_A Transcriptional regulat 74.7 0.41 1.4E-05 32.7 -0.9 33 2-34 83-118 (153)
82 1z91_A Organic hydroperoxide r 73.2 0.33 1.1E-05 32.8 -1.7 33 2-34 76-111 (147)
83 1r1t_A Transcriptional repress 73.0 1.4 4.7E-05 30.7 1.5 33 2-34 81-114 (122)
84 3nrv_A Putative transcriptiona 72.8 0.66 2.3E-05 31.4 -0.2 34 2-35 76-112 (148)
85 3kp7_A Transcriptional regulat 71.0 0.76 2.6E-05 31.4 -0.3 34 2-35 73-111 (151)
86 2hgc_A YJCQ protein; SR346, st 70.0 0.89 3E-05 32.6 -0.1 32 2-33 38-75 (102)
87 3l9f_A Putative uncharacterize 69.9 1.5 5.1E-05 33.8 1.2 39 2-40 79-122 (204)
88 2d1h_A ST1889, 109AA long hypo 69.8 1.7 5.6E-05 27.6 1.2 35 2-36 58-98 (109)
89 2fxa_A Protease production reg 69.6 1.2 4E-05 33.2 0.5 35 2-36 84-121 (207)
90 1on2_A Transcriptional regulat 69.1 1.2 4E-05 30.5 0.4 29 2-33 44-72 (142)
91 3fm5_A Transcriptional regulat 68.8 1.1 3.7E-05 30.6 0.2 34 2-35 76-112 (150)
92 2fbk_A Transcriptional regulat 68.8 0.85 2.9E-05 32.5 -0.4 34 2-35 108-144 (181)
93 3nqo_A MARR-family transcripti 67.5 1.9 6.4E-05 31.2 1.2 34 2-35 79-115 (189)
94 2x4h_A Hypothetical protein SS 63.9 1.6 5.6E-05 29.6 0.3 29 2-34 53-81 (139)
95 2zfw_A PEX; five alpha-helices 63.7 0.62 2.1E-05 34.5 -2.0 35 2-36 86-126 (148)
96 4aik_A Transcriptional regulat 62.0 2.9 0.0001 29.4 1.3 33 2-34 68-103 (151)
97 4b8x_A SCO5413, possible MARR- 60.4 2.8 9.6E-05 29.2 1.0 33 2-34 73-108 (147)
98 2f2e_A PA1607; transcription f 59.5 6.8 0.00023 27.8 2.9 28 2-29 59-88 (146)
99 1xmk_A Double-stranded RNA-spe 59.2 1.1 3.8E-05 30.4 -1.2 29 2-31 48-76 (79)
100 2qq9_A Diphtheria toxin repres 56.2 2.3 8E-05 32.2 -0.0 26 2-30 46-71 (226)
101 2lkp_A Transcriptional regulat 55.0 4.7 0.00016 26.8 1.3 34 2-35 67-101 (119)
102 1q1h_A TFE, transcription fact 52.2 2.7 9.2E-05 27.8 -0.2 28 2-29 55-88 (110)
103 3hrs_A Metalloregulator SCAR; 47.4 4.6 0.00016 30.4 0.4 38 2-42 42-93 (214)
104 2wte_A CSA3; antiviral protein 46.8 4.3 0.00015 31.9 0.1 35 2-38 188-222 (244)
105 4a5n_A Uncharacterized HTH-typ 44.7 4.3 0.00015 29.2 -0.2 30 2-31 62-94 (131)
106 1fx7_A Iron-dependent represso 41.5 4.8 0.00016 30.3 -0.3 28 2-32 46-73 (230)
107 3cta_A Riboflavin kinase; stru 39.1 11 0.00038 28.2 1.3 33 2-34 49-81 (230)
108 2g9w_A Conserved hypothetical 37.3 8.8 0.0003 26.5 0.5 34 2-35 50-87 (138)
109 2h09_A Transcriptional regulat 36.9 8.5 0.00029 26.6 0.4 30 2-34 76-105 (155)
110 2htj_A P fimbrial regulatory p 34.0 3.6 0.00012 26.2 -1.8 27 2-28 36-64 (81)
111 4fx0_A Probable transcriptiona 33.8 6.6 0.00023 27.4 -0.6 33 2-34 74-108 (148)
112 1y0u_A Arsenical resistance op 33.4 6.8 0.00023 25.4 -0.6 23 2-28 65-87 (96)
113 2p4w_A Transcriptional regulat 30.3 7.4 0.00025 29.6 -0.9 29 2-30 50-83 (202)
114 3nvo_A Zinc transport protein 27.3 24 0.00082 26.6 1.5 36 12-48 40-75 (264)
115 2es9_A Putative cytoplasmic pr 26.8 28 0.00096 25.5 1.7 15 24-39 37-52 (115)
116 2p8t_A Hypothetical protein PH 25.3 19 0.00063 28.2 0.5 32 2-37 52-83 (200)
117 3l09_A Putative transcriptiona 25.3 37 0.0013 27.4 2.3 30 3-32 68-97 (266)
118 1p22_C Beta-catenin, Pro2286; 21.9 13 0.00045 21.1 -0.7 14 14-29 5-18 (26)
119 4gdk_A Ubiquitin-like protein 21.0 48 0.0016 22.7 1.9 13 28-40 36-48 (91)
No 1
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=100.00 E-value=1.7e-41 Score=264.78 Aligned_cols=79 Identities=32% Similarity=0.619 Sum_probs=56.0
Q ss_pred CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCC-CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 032763 1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSE-IVPATLKKSAKPAGRPMGGPGGDRPRGPPRFDGDRPRFG 79 (134)
Q Consensus 1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~e-ivPaTlkk~~~~~~rpr~~~~g~r~~~~~r~~g~r~~~~ 79 (134)
||||+|||||||||||||||||||||||+|||+|||||+| |||+|||++.+++.||+++ +++.+.++. ..+
T Consensus 46 mqSLkSRGyVkEqFaWrhyYw~LTnEGIeYLR~yLhLP~e~IVPaTlk~~~~~~~rp~~~---~~~~r~~r~-----~~~ 117 (162)
T 2xzm_7 46 VRSLKDRGFLEEIFNWGFTYYYLNKEGCEYLKTKLGISADNVIPKTFKASNVNFISKEED---EEERPRRQF-----NKG 117 (162)
T ss_dssp HHHHHHHTSEEEEEETTEEEEEECHHHHHHHHHHHCSSTTSCCCGGGSCCCCCCCCCCCC--------------------
T ss_pred HhcccccccccceeeeEEEEEEEchHHHHHHHHHhCCCccccccchhccccCCCCCCCCC---CCCCCCCCC-----CCC
Confidence 7999999999999999999999999999999999999999 9999999998888888752 222221121 125
Q ss_pred CCccccCC
Q 032763 80 DREGYRGG 87 (134)
Q Consensus 80 DR~~YRr~ 87 (134)
||++||++
T Consensus 118 dR~~YRr~ 125 (162)
T 2xzm_7 118 GRTGERDG 125 (162)
T ss_dssp --------
T ss_pred Chhhhhcc
Confidence 89999985
No 2
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=100.00 E-value=1.1e-37 Score=229.46 Aligned_cols=57 Identities=47% Similarity=0.969 Sum_probs=50.2
Q ss_pred CCCcccccccceeeecceeEEEechhhHHHHHHhhCCCCCCccccccccCCCCCCCC
Q 032763 1 MQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPAGRPM 57 (134)
Q Consensus 1 mqSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTlkk~~~~~~rpr 57 (134)
||||+|||||||||||||||||||||||+|||+|||||+|||||||+++++++.||+
T Consensus 46 mqSLkSrGyVkeqFaWrh~Yw~LTnEGieyLR~yLhLP~eivPaTl~~~~~~~~rp~ 102 (105)
T 3u5c_K 46 LQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHIVPGTYIQERNPTQRPQ 102 (105)
T ss_dssp HHHHHHTSSEEEECTTTCCEEEECHHHHHHHHHHTCCCSSCCSSCSCCSCC------
T ss_pred HhcccccceeccEecceEEEEEEchhhHHHHHHHhCCCchhcCccccccCCCCCCCC
Confidence 799999999999999999999999999999999999999999999999888777774
No 3
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=93.89 E-value=0.021 Score=37.50 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=29.1
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||.....=|..+++||++|.+++.+..
T Consensus 48 ~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~ 81 (99)
T 1tbx_A 48 KFLIQEGFVKERQERGEKRLYLTEKGKLFAISLK 81 (99)
T ss_dssp HHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEecCCceEEEECHHHHHHHHHHH
Confidence 4688899998877779999999999999987654
No 4
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=93.40 E-value=0.027 Score=36.26 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=27.2
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|...|+|+..- .-+..||.||++|.+.+.+++
T Consensus 52 ~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 52 RVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp HHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 4678899998655 568899999999988777655
No 5
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=92.73 E-value=0.036 Score=35.70 Aligned_cols=34 Identities=6% Similarity=0.156 Sum_probs=28.4
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|...|+|...-.=+..||.||+++++-|-+.|
T Consensus 60 ~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 60 ARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp HHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred HHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 4678899998777778999999999998777655
No 6
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=92.15 E-value=0.053 Score=35.95 Aligned_cols=35 Identities=6% Similarity=-0.028 Sum_probs=28.1
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|...|+|...-.=+..||.||++|++.+.+.+.
T Consensus 56 ~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~ 90 (114)
T 2oqg_A 56 NALQACGLVESVKVGREIRYRALGAELNKTARTLE 90 (114)
T ss_dssp HHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHH
Confidence 45788999987666789999999999987766553
No 7
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=91.31 E-value=0.072 Score=39.03 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh 36 (134)
+-|+..|+|+..-.-|..||.||++|++-|.+.|.
T Consensus 93 ~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~ 127 (151)
T 3f6v_A 93 RVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFD 127 (151)
T ss_dssp HHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHH
Confidence 45788999998888999999999999999988763
No 8
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=90.98 E-value=0.14 Score=35.36 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=27.9
Q ss_pred CCcccccccceeeecceeEEEechhhHH-HHHHhhCCC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIE-FLRTYLNLP 38 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~-yLR~yLhLP 38 (134)
+.|+..|+|...-.=++.||.||+++|. .|...+.+-
T Consensus 56 ~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~~~~ 93 (118)
T 2jsc_A 56 SCLRGCGLVVATYEGRQVRYALADSHLARALGELVQVV 93 (118)
T ss_dssp HHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCCSSS
T ss_pred HHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHHHHH
Confidence 4688899998766678899999999995 444444443
No 9
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=90.90 E-value=0.085 Score=36.21 Aligned_cols=35 Identities=6% Similarity=0.081 Sum_probs=29.4
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|+..|+|+..-.-++.||.||+++|+-|.++|.
T Consensus 53 ~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~ 87 (118)
T 3f6o_A 53 HFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLA 87 (118)
T ss_dssp HHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHH
Confidence 45788999988777899999999999987776654
No 10
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=90.83 E-value=0.063 Score=35.22 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|...|+|+..-.-++.||.||+++++.|-++|
T Consensus 58 ~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 58 AWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp HHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 4578899998877788999999999998877765
No 11
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=90.49 E-value=0.1 Score=34.44 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=28.1
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...-.=|..+++||++|.+++.+..
T Consensus 52 ~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~ 85 (95)
T 2qvo_A 52 KKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIK 85 (95)
T ss_dssp HHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHH
T ss_pred HHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHH
Confidence 4688899996666778889999999999987644
No 12
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=89.84 E-value=0.11 Score=35.34 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=28.1
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|+..|+|+..-.-+..||.||+++|.-|-+.|
T Consensus 60 ~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l 93 (108)
T 2kko_A 60 QALKSGGLVEARREGTRQYYRIAGEDVARLFALV 93 (108)
T ss_dssp HHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence 4578899998776778899999999997776665
No 13
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=89.61 E-value=0.12 Score=34.92 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=28.8
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...-. -|..|++||++|.+++.+..
T Consensus 73 ~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 73 KRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp HHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred HHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 46888999987765 78999999999999988754
No 14
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=88.64 E-value=0.16 Score=35.13 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCcccccccceeee----cceeEEEechhhHHHHHHhhCCC
Q 032763 2 QSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLNLP 38 (134)
Q Consensus 2 qSLkSrg~Vke~Fa----Wrh~Yw~LTneGI~yLR~yLhLP 38 (134)
+.|...|||+..-. =+.-||.||++|.+.|.+++...
T Consensus 57 ~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~~ 97 (118)
T 2esh_A 57 ADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRSL 97 (118)
T ss_dssp HHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHHH
Confidence 35778899876542 24667899999999999876543
No 15
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=88.38 E-value=0.12 Score=35.64 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=24.8
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHH
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLR 32 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR 32 (134)
+.|...|+|+..-. +..+|.||++|.+.+.
T Consensus 65 ~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 65 KDLIDSGLVERRSG-QITTYALTEKGMNVRN 94 (111)
T ss_dssp HHHHHTTSEEEEES-SSEEEEECHHHHHHHH
T ss_pred HHHHHCCCEEEeec-CcEEEEECccHHHHHH
Confidence 46788999988777 9999999999976544
No 16
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=88.16 E-value=0.12 Score=34.17 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=27.6
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|...|+|+..-.=++.||.||+++++-|-+.|
T Consensus 58 ~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l 91 (102)
T 3pqk_A 58 GVLRESGIVETRRNIKQIFYRLTEAKAAQLVNAL 91 (102)
T ss_dssp HHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHH
T ss_pred HHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHH
Confidence 4578889998776778999999999997766655
No 17
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=87.44 E-value=0.13 Score=35.12 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=22.6
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~y 34 (134)
..|+++|||... ... |+||++|.++|..+
T Consensus 42 ~~L~~~GLI~~~-~~~---~~LT~kG~~~l~~l 70 (95)
T 1r7j_A 42 KMLMDLEIIRQE-GKQ---YMLTKKGEELLEDI 70 (95)
T ss_dssp HHHHHTTSEEEE-TTE---EEECHHHHHHHHHH
T ss_pred HHHHHCCCeEEE-CCe---eEEChhHHHHHHHH
Confidence 458899999876 222 88999999888754
No 18
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=87.31 E-value=0.2 Score=33.74 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=27.4
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...-. -|..|+.||++|.+++....
T Consensus 72 ~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 108 (146)
T 2gxg_A 72 DKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI 108 (146)
T ss_dssp HHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH
Confidence 46888999986543 78899999999999887643
No 19
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=87.23 E-value=0.19 Score=33.47 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=27.0
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|.++|||...- .-|..++.||++|.+++.+..
T Consensus 74 ~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 110 (140)
T 2nnn_A 74 ERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGL 110 (140)
T ss_dssp HHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHH
Confidence 4688899998753 468889999999998887643
No 20
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=86.82 E-value=0.23 Score=36.21 Aligned_cols=36 Identities=14% Similarity=0.415 Sum_probs=27.1
Q ss_pred CCcccccccceeee-----cceeEEEechhhHHHHHHhhCC
Q 032763 2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL 37 (134)
Q Consensus 2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhL 37 (134)
+.|...|||+..-. =+--||.||++|.+.|.+++..
T Consensus 84 ~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 124 (145)
T 1xma_A 84 ARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE 124 (145)
T ss_dssp HHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 45778899876532 1457789999999999987654
No 21
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=86.74 E-value=0.18 Score=33.71 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=25.8
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHH
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFL 31 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yL 31 (134)
+.|..+|||...-. -|..++.||++|.+++
T Consensus 67 ~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 67 KLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 46888999987665 7889999999999998
No 22
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=86.63 E-value=0.22 Score=33.30 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=26.8
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||...- .-|..|++||++|.+++.+.
T Consensus 72 ~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 72 ARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp HHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 4688899997653 46889999999999988754
No 23
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=86.04 E-value=0.2 Score=33.92 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=27.0
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .=|..+++||++|.+++.+..
T Consensus 73 ~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 109 (143)
T 3oop_A 73 DVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR 109 (143)
T ss_dssp HHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH
Confidence 4688899998654 567899999999999987643
No 24
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=86.00 E-value=0.28 Score=33.51 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=27.2
Q ss_pred CCcccccccceeee----cceeEEEechhhHHHHHHhhCC
Q 032763 2 QSFKSREYVRETFA----WMHYYWYLTNDGIEFLRTYLNL 37 (134)
Q Consensus 2 qSLkSrg~Vke~Fa----Wrh~Yw~LTneGI~yLR~yLhL 37 (134)
+.|...|||...-. =+.-||.||++|.+.|.+.+..
T Consensus 48 ~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 48 KKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (108)
T ss_dssp HHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence 45778899876532 2467999999999999887644
No 25
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=85.79 E-value=0.3 Score=34.05 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=26.9
Q ss_pred CCcccccccceee-----ecceeEEEechhhHHHHHHhhCC
Q 032763 2 QSFKSREYVRETF-----AWMHYYWYLTNDGIEFLRTYLNL 37 (134)
Q Consensus 2 qSLkSrg~Vke~F-----aWrh~Yw~LTneGI~yLR~yLhL 37 (134)
+.|...|||+... .=+--||.||++|.++|.+.+..
T Consensus 55 ~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 95 (116)
T 3f8b_A 55 KRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFES 95 (116)
T ss_dssp HHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 4577889987653 13567899999999999887643
No 26
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=85.75 E-value=0.15 Score=34.45 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=23.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|.+++.||++|.+++.+..
T Consensus 73 ~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 73 KSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 4688899998766 688899999999999988764
No 27
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=85.72 E-value=0.33 Score=33.89 Aligned_cols=35 Identities=0% Similarity=-0.030 Sum_probs=26.4
Q ss_pred CCcccccccceeee------cceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~Fa------Wrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|...|||..... =+.-||.||++|.+.|.+++.
T Consensus 64 ~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~ 104 (115)
T 2dql_A 64 KFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLAR 104 (115)
T ss_dssp HHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHH
Confidence 45778899876432 235799999999999988763
No 28
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=85.51 E-value=0.22 Score=34.57 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhhCCC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLP 38 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP 38 (134)
+.|...|||...-.=+--||.||++|.+.|.+++..+
T Consensus 52 ~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 52 DSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp HHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 4577889987653224568899999999999987654
No 29
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=85.36 E-value=0.19 Score=34.27 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=25.6
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHH
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRT 33 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~ 33 (134)
+.|..+|||...-. -|..||.||++|.+.+..
T Consensus 58 ~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~~ 92 (112)
T 1z7u_A 58 REMEKDGLVHRESFNELPPRVEYTLTPEGYALYDA 92 (112)
T ss_dssp HHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHH
T ss_pred HHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHHH
Confidence 45788999987654 588999999999977654
No 30
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=85.28 E-value=0.3 Score=32.49 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=27.0
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..|++||++|.+++....
T Consensus 69 ~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (139)
T 3bja_A 69 QRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD 105 (139)
T ss_dssp HHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH
Confidence 4678899997653 468899999999999887643
No 31
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=85.23 E-value=0.28 Score=33.22 Aligned_cols=34 Identities=9% Similarity=0.050 Sum_probs=25.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..|++||++|.+.+.+..
T Consensus 78 ~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 78 DRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp HHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 4678899998754 468889999999999887654
No 32
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=85.18 E-value=0.12 Score=34.91 Aligned_cols=31 Identities=6% Similarity=0.023 Sum_probs=24.6
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHH
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLR 32 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR 32 (134)
+.|..+|||+..-. =|..||.||++|.+++.
T Consensus 50 ~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~~ 83 (107)
T 2hzt_A 50 RELEADGVINRIVYNQVPPKVEYELSEYGRSLEG 83 (107)
T ss_dssp HHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred HHHHHCCCEEEeecCCCCCeEEEEECccHHHHHH
Confidence 45888999987654 57899999999977554
No 33
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=85.17 E-value=0.27 Score=33.88 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=27.5
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..+++||++|.+++.+..
T Consensus 80 ~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 116 (154)
T 2eth_A 80 DSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL 116 (154)
T ss_dssp HHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH
Confidence 4688899998754 467889999999999987653
No 34
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=84.96 E-value=0.36 Score=31.53 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=25.9
Q ss_pred CCcccccccce-eeecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRE-TFAWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke-~FaWrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||+. ...-|..++.||++|.+.+.+.
T Consensus 53 ~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~ 86 (95)
T 2pg4_A 53 DRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECL 86 (95)
T ss_dssp HHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHH
Confidence 45788999972 2445888999999999988764
No 35
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=84.88 E-value=0.22 Score=34.05 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=28.8
Q ss_pred CCcccccccce-----eeecceeEEEechhhHHHHHHhhCC
Q 032763 2 QSFKSREYVRE-----TFAWMHYYWYLTNDGIEFLRTYLNL 37 (134)
Q Consensus 2 qSLkSrg~Vke-----~FaWrh~Yw~LTneGI~yLR~yLhL 37 (134)
+.|..+|||.. .-.=|.++++||++|.+++.+....
T Consensus 77 ~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~ 117 (154)
T 2qww_A 77 DGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTAN 117 (154)
T ss_dssp HHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSC
T ss_pred HHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhh
Confidence 45788999987 3457889999999999998876543
No 36
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=84.78 E-value=0.29 Score=34.42 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCcccccccceeee-----cceeEEEechhhHHHHHHhhCCC
Q 032763 2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLP 38 (134)
Q Consensus 2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhLP 38 (134)
+.|...|||..... =+--||.||++|.++|.+++..-
T Consensus 55 ~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~~ 96 (117)
T 3elk_A 55 KTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQAL 96 (117)
T ss_dssp HHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTH
T ss_pred HHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 35677889876532 24568899999999999987653
No 37
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=84.78 E-value=0.44 Score=31.77 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=27.5
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|+.. +|+..-.-++.||.||+++|+-|.++|.
T Consensus 63 ~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 63 CKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLN 96 (99)
T ss_dssp HHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC
T ss_pred HHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHH
Confidence 346777 8876667889999999999988877764
No 38
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=84.76 E-value=0.25 Score=33.39 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=25.1
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..++.||++|.+.+.+..
T Consensus 72 ~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 72 RELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp HHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 4678899997753 468899999999998887643
No 39
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=84.51 E-value=0.31 Score=32.71 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=27.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||+..- .-|..+++||++|.+++....
T Consensus 69 ~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (145)
T 2a61_A 69 KRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI 105 (145)
T ss_dssp HHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 4688899998764 457889999999999887643
No 40
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=84.06 E-value=0.23 Score=33.13 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=27.1
Q ss_pred CCccccccccee---eecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRET---FAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~---FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||... ..-|..++.||++|.+++.+..
T Consensus 65 ~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (138)
T 3bpv_A 65 RRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL 101 (138)
T ss_dssp HHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH
T ss_pred HHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH
Confidence 468889999874 3468889999999998887643
No 41
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.90 E-value=0.37 Score=32.21 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=27.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..|++||++|.+++.+..
T Consensus 70 ~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 70 DRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp HHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 4688899998653 468889999999999987654
No 42
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=83.59 E-value=0.37 Score=32.30 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..|..||++|.+.+.+..
T Consensus 69 ~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 105 (139)
T 3eco_A 69 RNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT 105 (139)
T ss_dssp HHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH
Confidence 4678899998664 468899999999999987643
No 43
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=83.57 E-value=0.39 Score=32.32 Aligned_cols=34 Identities=9% Similarity=0.108 Sum_probs=27.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..|+.||++|.+++....
T Consensus 65 ~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (144)
T 1lj9_A 65 KRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV 101 (144)
T ss_dssp HHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH
Confidence 4678899998764 468899999999999887543
No 44
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=83.23 E-value=0.41 Score=33.60 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=27.9
Q ss_pred CCcccccccceeee-----cceeEEEechhhHHHHHHhhCCCC
Q 032763 2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLPS 39 (134)
Q Consensus 2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhLP~ 39 (134)
+.|...|||..... =+--||.||++|.++|.+.+..-.
T Consensus 52 ~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~ 94 (117)
T 4esf_A 52 VRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKWD 94 (117)
T ss_dssp HHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHHH
Confidence 45778899876531 245688999999999998775543
No 45
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=83.22 E-value=0.39 Score=33.15 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=27.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..++.||++|.+++.+..
T Consensus 88 ~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 124 (162)
T 3cjn_A 88 DGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW 124 (162)
T ss_dssp HHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4688899997654 568899999999999887643
No 46
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=82.96 E-value=0.27 Score=34.94 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=25.8
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~y 34 (134)
+.|...|||+..-. =|..||.||++|.+.+...
T Consensus 71 ~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~~l 106 (131)
T 1yyv_A 71 QALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXV 106 (131)
T ss_dssp HHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred HHHHHCCcEEEEecCCCCCeEEEEECccHHHHHHHH
Confidence 45788999987654 4789999999998866543
No 47
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=82.91 E-value=0.47 Score=33.35 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCcccccccceeee-----cceeEEEechhhHHHHHHhhCC
Q 032763 2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNL 37 (134)
Q Consensus 2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhL 37 (134)
+.|...|+|..... =+--||.||++|.++|.+.+..
T Consensus 54 ~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~ 94 (116)
T 3hhh_A 54 LRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 (116)
T ss_dssp HHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 45778888876431 1356889999999999887644
No 48
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=81.89 E-value=0.35 Score=35.58 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=27.6
Q ss_pred CCcccccccceeeec-----ceeEEEechhhHHHHHHhhCCCCC
Q 032763 2 QSFKSREYVRETFAW-----MHYYWYLTNDGIEFLRTYLNLPSE 40 (134)
Q Consensus 2 qSLkSrg~Vke~FaW-----rh~Yw~LTneGI~yLR~yLhLP~e 40 (134)
+.|...|+|...-.= +-.+|.||++|.+.|.+++.-|.+
T Consensus 45 ~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~~~ 88 (179)
T 1yg2_A 45 NKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTA 88 (179)
T ss_dssp HHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCC
T ss_pred HHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCccc
Confidence 457778888754321 345679999999999999988754
No 49
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=81.33 E-value=0.42 Score=33.94 Aligned_cols=34 Identities=6% Similarity=0.021 Sum_probs=24.2
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .=|..+.+||++|.+.+.+..
T Consensus 90 ~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 90 DQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp HHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred HHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4688899998765 567899999999999887644
No 50
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=81.28 E-value=0.18 Score=35.89 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=24.8
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|...|+|+.. . +. +|.||++|.+||...+.
T Consensus 51 ~~Le~~GLV~~~-~-rg-~Y~LT~~G~~~l~~~~d 82 (111)
T 3b73_A 51 KKLADHDLLQPL-A-NG-VYVITEEGEAYLNGEYD 82 (111)
T ss_dssp HHHHHTTSEEEC-S-TT-CEEECHHHHHHHTTCEE
T ss_pred HHHHHCCCEEec-C-Cc-eEEECchHHHHHHHHHH
Confidence 458889999875 3 33 99999999999876443
No 51
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=81.27 E-value=0.35 Score=33.21 Aligned_cols=34 Identities=12% Similarity=0.135 Sum_probs=23.8
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||..+- .-|..|++||++|.+++....
T Consensus 84 ~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 84 NRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS 120 (160)
T ss_dssp HHHHHHTSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH
Confidence 4678899997653 568899999999999887643
No 52
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=81.20 E-value=0.38 Score=33.24 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=22.3
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHH
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 33 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~ 33 (134)
+.|+..|+|...-.=++.||.||+++|.-|-+
T Consensus 78 ~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 78 RTLYKQGVVNFRKEGKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp HHHHHTTSEEEC----CCEEEESCHHHHHHHH
T ss_pred HHHHHCCCeEEEEECCEEEEEECHHHHHHHHH
Confidence 45788899986656688999999999965443
No 53
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.17 E-value=0.43 Score=31.92 Aligned_cols=34 Identities=15% Similarity=0.025 Sum_probs=27.1
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .=|..+++||++|.+++.+..
T Consensus 74 ~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 110 (146)
T 2fbh_A 74 DGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE 110 (146)
T ss_dssp HHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH
T ss_pred HHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH
Confidence 4678899998754 368889999999999887643
No 54
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=81.06 E-value=0.52 Score=32.61 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=26.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..+.+||++|.+.+.+..
T Consensus 86 ~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 122 (159)
T 3s2w_A 86 QKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK 122 (159)
T ss_dssp HHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4578899998665 567889999999999887643
No 55
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=80.95 E-value=0.33 Score=32.93 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=26.8
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..|++||++|.+++.+..
T Consensus 67 ~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 103 (145)
T 3g3z_A 67 KTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT 103 (145)
T ss_dssp HHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence 4578899998543 468899999999999886543
No 56
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=80.72 E-value=0.55 Score=33.08 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=26.5
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||...- .-|..++.||++|.+++.+.
T Consensus 81 ~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 81 DRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp HHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred HHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 4688899998754 37889999999999887653
No 57
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=80.67 E-value=0.61 Score=32.64 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|..+|||...-. =|..+.+||++|.+.+.+...
T Consensus 84 ~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 84 DRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp HHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence 46888999987654 678899999999988876543
No 58
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=80.11 E-value=0.3 Score=33.64 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=23.2
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..+++||++|.+++.+..
T Consensus 85 ~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 121 (162)
T 2fa5_A 85 ARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp HHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred HHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4688899997654 456788999999999887643
No 59
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=79.82 E-value=0.65 Score=32.41 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=27.3
Q ss_pred CCcccccccceeee-----cceeEEEechhhHHHHHHhhCCC
Q 032763 2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEFLRTYLNLP 38 (134)
Q Consensus 2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~yLR~yLhLP 38 (134)
+.|...|+|..... =+--||.||++|.++|.+.+..-
T Consensus 50 ~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~ 91 (115)
T 4esb_A 50 LRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQSW 91 (115)
T ss_dssp HHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 45778899876531 14578899999999999876543
No 60
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=79.81 E-value=0.62 Score=31.67 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=26.9
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .=|..++.||++|.+++....
T Consensus 73 ~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (155)
T 1s3j_A 73 DRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL 109 (155)
T ss_dssp HHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 4678899998764 357889999999998887543
No 61
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=79.75 E-value=0.51 Score=31.99 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=27.0
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||+..-. =|..++.||++|.+++....
T Consensus 76 ~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 112 (152)
T 3bj6_A 76 QEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR 112 (152)
T ss_dssp HHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH
Confidence 46888999987643 67889999999998887643
No 62
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=79.71 E-value=0.73 Score=30.78 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCcccccccceeeecceeEEEechhhH-HHHHHh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGI-EFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI-~yLR~y 34 (134)
+.|+..|+|...-.=++.||.||+++| +++...
T Consensus 61 ~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l 94 (106)
T 1r1u_A 61 KLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQA 94 (106)
T ss_dssp HHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence 457888999866566899999999998 455543
No 63
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=79.40 E-value=0.41 Score=31.97 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=26.6
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...-. -|..+..||++|.+.+....
T Consensus 72 ~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~ 108 (141)
T 3bro_A 72 QRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 108 (141)
T ss_dssp HHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH
T ss_pred HHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH
Confidence 46888999987643 68889999999987776543
No 64
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=79.34 E-value=0.75 Score=31.07 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=27.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .=|..+++||++|.+.+.+..
T Consensus 72 ~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (144)
T 3f3x_A 72 DKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEAN 108 (144)
T ss_dssp HHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHH
Confidence 4678899998664 468889999999999887643
No 65
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=79.34 E-value=0.55 Score=35.53 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCccccccccee-eec-------ceeEEEechhhHHHHHHhhCCCC
Q 032763 2 QSFKSREYVRET-FAW-------MHYYWYLTNDGIEFLRTYLNLPS 39 (134)
Q Consensus 2 qSLkSrg~Vke~-FaW-------rh~Yw~LTneGI~yLR~yLhLP~ 39 (134)
+.|+..|+|++. +.| -+.||.||++|.+.|.+|=-|-.
T Consensus 68 ~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~y~~la~ 113 (151)
T 3u1d_A 68 DELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRAVSMYEE 113 (151)
T ss_dssp HHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHHTTCSTH
T ss_pred HHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHHhHHHhH
Confidence 457888999853 556 25699999999999998655543
No 66
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=79.31 E-value=0.4 Score=32.84 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=24.8
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..+++||++|.+++.+..
T Consensus 79 ~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 115 (155)
T 3cdh_A 79 DQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLV 115 (155)
T ss_dssp HHHHHTTSEEECC------CCCEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHH
Confidence 4678899997643 467788999999999887643
No 67
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=78.89 E-value=0.44 Score=32.43 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=24.6
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||..+- .=|.++.+||++|.+++.+..
T Consensus 72 ~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 72 KKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp HHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred HHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 4578899998764 457889999999999887644
No 68
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=78.28 E-value=0.51 Score=34.38 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=27.0
Q ss_pred CCcccccccceeee------cceeEEEechhhHHHHHHhhCC
Q 032763 2 QSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYLNL 37 (134)
Q Consensus 2 qSLkSrg~Vke~Fa------Wrh~Yw~LTneGI~yLR~yLhL 37 (134)
+.|...|||+.... =+.-||.||++|.++|.+++.-
T Consensus 76 ~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~ 117 (138)
T 2e1n_A 76 KFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQL 117 (138)
T ss_dssp HHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHH
T ss_pred HHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 45778888876431 2468999999999999887653
No 69
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=78.22 E-value=0.56 Score=32.63 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=26.8
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...-. -|..+.+||++|.+.+.+..
T Consensus 89 ~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 89 DQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp HHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 45788999986543 67899999999999887654
No 70
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=78.05 E-value=0.49 Score=32.52 Aligned_cols=34 Identities=12% Similarity=0.172 Sum_probs=23.6
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .=|..+++||++|.+++.+..
T Consensus 77 ~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 113 (149)
T 4hbl_A 77 KRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVF 113 (149)
T ss_dssp HHHHHHTSEEC---------CEEEECSHHHHHHHHHH
T ss_pred HHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHH
Confidence 4578899998664 358889999999999987654
No 71
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=77.96 E-value=0.34 Score=32.57 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=23.4
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHH
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLR 32 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR 32 (134)
+.|...|+|...-. =|..||.||++|.+.+.
T Consensus 61 ~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 61 KFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp HHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred HHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 45788899976543 57799999999976543
No 72
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=77.61 E-value=0.82 Score=32.61 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=26.0
Q ss_pred CCcccccccceee----ecceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETF----AWMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~F----aWrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|...|||.... .=+--||.||++|.++|.+.+.
T Consensus 60 ~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~ 98 (123)
T 3ri2_A 60 RRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEA 98 (123)
T ss_dssp HHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHH
Confidence 4577889987642 1245689999999999998754
No 73
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.45 E-value=0.79 Score=31.86 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=27.7
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..+.+||++|.+++.+..
T Consensus 82 ~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 82 QDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp HHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 4578899998765 568899999999999887654
No 74
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=77.33 E-value=0.47 Score=41.96 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCccccc-ccceeeecceeEEEechhhHHHHHHhhCCCCCCc
Q 032763 1 MQSFKSRE-YVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIV 42 (134)
Q Consensus 1 mqSLkSrg-~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP~eiv 42 (134)
+.||.++| +|+-.-- -.-+|.||+||.+||. -+||+..|
T Consensus 41 ~~~L~~~~~~v~~~~~-~~~~~~Lt~eg~~~~~--~G~pE~~~ 80 (508)
T 3l4g_A 41 VKSLQALGEVIEAELR-STKHWELTAEGEEIAR--EGSHEARV 80 (508)
T ss_dssp -------------------------------------------
T ss_pred HHHHHhCCCeEEEEEE-EEEEEEECHHHHHHHH--cCCHHHHH
Confidence 46899998 7653222 3457899999999998 46777544
No 75
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=76.17 E-value=0.48 Score=32.11 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||+..-. -|..+.+||++|.+.+.+..
T Consensus 73 ~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 109 (142)
T 3ech_A 73 RELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE 109 (142)
T ss_dssp HHHHHTTSEEC----------CCEECHHHHHHHHHHH
T ss_pred HHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH
Confidence 46788999987544 58889999999999887643
No 76
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=76.10 E-value=0.57 Score=32.00 Aligned_cols=34 Identities=6% Similarity=0.105 Sum_probs=26.7
Q ss_pred CCccccccccee---eecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRET---FAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~---FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||... -.=|..+.+||++|.+.+.+..
T Consensus 75 ~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 111 (127)
T 2frh_A 75 KILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 111 (127)
T ss_dssp HHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred HHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 467889999763 3467888999999999987654
No 77
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=75.96 E-value=0.68 Score=30.87 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=24.3
Q ss_pred CCcccccccceee-ecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETF-AWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~F-aWrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||.-.- .=++.|..||++|.+.+...
T Consensus 50 ~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~~~ 83 (123)
T 1okr_A 50 TRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTS 83 (123)
T ss_dssp HHHHHHTSEEEEEETTEEEEEESSCHHHHHHHHH
T ss_pred HHHHHCCCeEEEecCCeEEEEEecCHHHHHHHHH
Confidence 4688899986543 55667789999998776543
No 78
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=75.24 E-value=1 Score=28.51 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=26.4
Q ss_pred CCcccccccceee--ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF--AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F--aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .-|..|.+||++|.+.+....
T Consensus 56 ~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~~ 91 (109)
T 1sfx_A 56 KVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFK 91 (109)
T ss_dssp HHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHHH
T ss_pred HHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHHH
Confidence 5688899997654 366789999999998877543
No 79
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=75.21 E-value=1 Score=32.60 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=29.5
Q ss_pred CCcccccccceeeecce--eEEEechhhHHHHHHhhCCCCCC
Q 032763 2 QSFKSREYVRETFAWMH--YYWYLTNDGIEFLRTYLNLPSEI 41 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh--~Yw~LTneGI~yLR~yLhLP~ei 41 (134)
+.|...||+++...--. .+..||++|.++|+.....|++|
T Consensus 75 rqLi~~G~L~~~~~~~~~~~~L~Lt~~g~~vL~~~~~~~~~l 116 (134)
T 3aaf_A 75 RQLITEGFLVEVSRYNKFMKICALTKKGRNWLHKANTESQSL 116 (134)
T ss_dssp HHHHHTTSEEEEECSSTTCEEEEECHHHHHHHHHHTTSCCCC
T ss_pred HHHHHcCCceeecCcCccCceEEECHHHHHHHhCCccCCCce
Confidence 45778899998763211 25899999999999988755444
No 80
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=75.07 E-value=0.43 Score=32.53 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=24.0
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||..+- .=|..|.+||++|.+.+.+..
T Consensus 79 ~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 115 (148)
T 3jw4_A 79 QGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN 115 (148)
T ss_dssp HHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH
T ss_pred HHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH
Confidence 4688899997654 467889999999999987644
No 81
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=74.71 E-value=0.41 Score=32.71 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=23.6
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||...- .=|..++.||++|.+++.+.
T Consensus 83 ~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 118 (153)
T 2pex_A 83 KRLQAAGLVTRTRAASDERQVIIALTETGRALRSKA 118 (153)
T ss_dssp HHHHHTTSEEEEC-------CEEEECHHHHHGGGGS
T ss_pred HHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHHH
Confidence 4688899998754 45788999999999887643
No 82
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=73.21 E-value=0.33 Score=32.79 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=25.9
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||...-. -|..|++||++|.+++.+.
T Consensus 76 ~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~~ 111 (147)
T 1z91_A 76 KRMEQQGLITRKRSEEDERSVLISLTEDGALLKEKA 111 (147)
T ss_dssp HHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred HHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHHH
Confidence 46788999976543 6889999999999876643
No 83
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=73.03 E-value=1.4 Score=30.67 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=26.0
Q ss_pred CCcccccccceeeecceeEEEechhhH-HHHHHh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGI-EFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI-~yLR~y 34 (134)
+.|...|+|...-.=++.||+||+++| ++++..
T Consensus 81 ~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~l 114 (122)
T 1r1t_A 81 RSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNA 114 (122)
T ss_dssp HHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHH
Confidence 457888999876667889999999998 555543
No 84
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=72.80 E-value=0.66 Score=31.39 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=23.3
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .=|..++.||++|.+.+.+..
T Consensus 76 ~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 76 KKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp HHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 4578899997653 356788999999999987654
No 85
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=71.02 E-value=0.76 Score=31.40 Aligned_cols=34 Identities=15% Similarity=0.157 Sum_probs=22.9
Q ss_pred CCcccccccce-----eeecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRE-----TFAWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke-----~FaWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||.- .-.=|.+|.+||++|.+.+.+..
T Consensus 73 ~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~ 111 (151)
T 3kp7_A 73 KKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK 111 (151)
T ss_dssp HHHHHTTSEEC-----------CCBEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH
Confidence 45788999984 34568899999999999887643
No 86
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=69.98 E-value=0.89 Score=32.63 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=21.6
Q ss_pred CCcccccccceeeecceeE------EEechhhHHHHHH
Q 032763 2 QSFKSREYVRETFAWMHYY------WYLTNDGIEFLRT 33 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Y------w~LTneGI~yLR~ 33 (134)
+.|...||++-..-|+.-+ =.+|-+||+||.+
T Consensus 38 ~~L~d~GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~E 75 (102)
T 2hgc_A 38 NFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKE 75 (102)
T ss_dssp HHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHH
T ss_pred HHHHHCCCccceEEEeCcceeeccCceECHHHHHHHHH
Confidence 4566777777655444311 2489999999998
No 87
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=69.93 E-value=1.5 Score=33.85 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=29.8
Q ss_pred CCcccccccceeee----c-ceeEEEechhhHHHHHHhhCCCCC
Q 032763 2 QSFKSREYVRETFA----W-MHYYWYLTNDGIEFLRTYLNLPSE 40 (134)
Q Consensus 2 qSLkSrg~Vke~Fa----W-rh~Yw~LTneGI~yLR~yLhLP~e 40 (134)
+.|...|+|..... = .--||.||++|.+.|.++|.-|.+
T Consensus 79 ~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~~~~ 122 (204)
T 3l9f_A 79 RKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSDVN 122 (204)
T ss_dssp HHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHSCCC
T ss_pred HHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhcccC
Confidence 45778899876431 1 246899999999999999987754
No 88
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=69.84 E-value=1.7 Score=27.64 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=26.2
Q ss_pred CCcccccccceeee------cceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFA------WMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~Fa------Wrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|..+|||...-. .+.++|.||++.++.+...|.
T Consensus 58 ~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~~ 98 (109)
T 2d1h_A 58 KKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLL 98 (109)
T ss_dssp HHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHH
T ss_pred HHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHHH
Confidence 46788999987653 446789999988888877654
No 89
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=69.63 E-value=1.2 Score=33.24 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=26.2
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|..+|||...-. -|..|.+||++|.+.+.+...
T Consensus 84 ~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (207)
T 2fxa_A 84 KKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207)
T ss_dssp HHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHH
Confidence 45788999987654 788999999999999887663
No 90
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=69.06 E-value=1.2 Score=30.52 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=22.3
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHH
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRT 33 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~ 33 (134)
+.|..+|||... +..+++||++|.+.+..
T Consensus 44 ~~Le~~Glv~r~---~~~~~~LT~~g~~~~~~ 72 (142)
T 1on2_A 44 QKLDKDEYLIYE---KYRGLVLTSKGKKIGKR 72 (142)
T ss_dssp HHHHHTTSEEEE---TTTEEEECHHHHHHHHH
T ss_pred HHHHHCCCEEEe---eCceEEEchhHHHHHHH
Confidence 457889999765 34689999999877654
No 91
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=68.79 E-value=1.1 Score=30.55 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=21.5
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...- .=|-.+.+||++|.+++.+..
T Consensus 76 ~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 76 DELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK 112 (150)
T ss_dssp HHHHTTTSEEC-----------CEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH
Confidence 4578899997643 357788999999999887643
No 92
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=68.76 E-value=0.85 Score=32.49 Aligned_cols=34 Identities=12% Similarity=0.067 Sum_probs=24.0
Q ss_pred CCcccccccceee---ecceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETF---AWMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~F---aWrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||+..- .=|..+.+||++|.+++.+..
T Consensus 108 ~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 144 (181)
T 2fbk_A 108 VRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL 144 (181)
T ss_dssp HHHHHHTSEECCC-------CCBEECHHHHHHHHHHH
T ss_pred HHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4578899997653 467788999999999887643
No 93
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=67.52 E-value=1.9 Score=31.23 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=26.8
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHhh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~yL 35 (134)
+.|..+|||...-. -|..+.+||++|.+.+.+..
T Consensus 79 ~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 79 ANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp HHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 46888999987653 56799999999998877544
No 94
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=63.92 E-value=1.6 Score=29.57 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||...- ..|+||++|.+.+.+.
T Consensus 53 ~~Le~~Gli~r~~----~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 53 SHLEEKGLVKKKE----DGVWITNNGTRSINYL 81 (139)
T ss_dssp HHHHHTTSEEEET----TEEEECHHHHHHHHHH
T ss_pred HHHHHCCCEEecC----CeEEEChhHHHHHHHH
Confidence 4678889997543 4689999999876544
No 95
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=63.71 E-value=0.62 Score=34.52 Aligned_cols=35 Identities=6% Similarity=0.081 Sum_probs=25.7
Q ss_pred CCcccccccceee------ecceeEEEechhhHHHHHHhhC
Q 032763 2 QSFKSREYVRETF------AWMHYYWYLTNDGIEFLRTYLN 36 (134)
Q Consensus 2 qSLkSrg~Vke~F------aWrh~Yw~LTneGI~yLR~yLh 36 (134)
+.|...|||+... .=+.-||.||++|.+.|.+++.
T Consensus 86 ~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 126 (148)
T 2zfw_A 86 KFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 126 (148)
T ss_dssp HHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHH
T ss_pred HHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHH
Confidence 4577888887642 1346799999999988777654
No 96
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=61.98 E-value=2.9 Score=29.38 Aligned_cols=33 Identities=6% Similarity=0.062 Sum_probs=26.3
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||.-.-+ =|-.+.+||++|.+.+.+.
T Consensus 68 ~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~ 103 (151)
T 4aik_A 68 DQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV 103 (151)
T ss_dssp HHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH
T ss_pred HHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH
Confidence 45788999976554 6889999999999887654
No 97
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=60.42 E-value=2.8 Score=29.16 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=25.7
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yLR~y 34 (134)
..|..+|||...-+ =|-.+-+||++|.+.+.+.
T Consensus 73 ~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 73 DRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp HHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred HHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 46888999987765 4789999999999988753
No 98
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=59.54 E-value=6.8 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=20.0
Q ss_pred CCcccccccceeee--cceeEEEechhhHH
Q 032763 2 QSFKSREYVRETFA--WMHYYWYLTNDGIE 29 (134)
Q Consensus 2 qSLkSrg~Vke~Fa--Wrh~Yw~LTneGI~ 29 (134)
+.|...|+|+..-. =+..+|.||++|.+
T Consensus 59 ~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~ 88 (146)
T 2f2e_A 59 RNLVEHGVMVAVPAESGSHQEYRLTDKGRA 88 (146)
T ss_dssp HHHHHTTSEEEEECSSSSCEEEEECHHHHT
T ss_pred HHHHHCCCEEEEecCCCCeEEEEECchHHH
Confidence 46788899876532 11678999999964
No 99
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=59.17 E-value=1.1 Score=30.36 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=20.4
Q ss_pred CCcccccccceeeecceeEEEechhhHHHH
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFL 31 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yL 31 (134)
++|...|+|..+=.=|- +|.||++|-+.+
T Consensus 48 ~~Le~eGlV~~~~~gRP-~w~LT~~g~~~~ 76 (79)
T 1xmk_A 48 IDMERQGDVYRQGTTPP-IWHLTDKKRERM 76 (79)
T ss_dssp HHHHHTTSEEEECSSSC-EEEECHHHHTTT
T ss_pred HHHHHCCCEEecCCCCC-CeEeCHhHHhHh
Confidence 46778888864322255 999999997653
No 100
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=56.23 E-value=2.3 Score=32.18 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=20.2
Q ss_pred CCcccccccceeeecceeEEEechhhHHH
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEF 30 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~y 30 (134)
+.|..+|||.-. ++.+++||++|.+.
T Consensus 46 ~~Le~~GlV~r~---~~~~v~LT~~G~~~ 71 (226)
T 2qq9_A 46 ARMERDGLVVVA---SDRSLQMTPTGRTL 71 (226)
T ss_dssp HHHHHTTSEEEC---TTSBEEECHHHHHH
T ss_pred HHHHHCCCEEEe---CCCCeEECHHHHHH
Confidence 467889999765 34679999999763
No 101
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=55.04 E-value=4.7 Score=26.85 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=25.3
Q ss_pred CCcccccccceeeecceeEEEechhhH-HHHHHhh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGI-EFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI-~yLR~yL 35 (134)
+.|...|+|...-.-++.||+||.+.+ +.+...+
T Consensus 67 ~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~ 101 (119)
T 2lkp_A 67 RVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAI 101 (119)
T ss_dssp HHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHH
Confidence 457778999877778899999996654 5665543
No 102
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=52.16 E-value=2.7 Score=27.85 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=21.9
Q ss_pred CCccccccccee------eecceeEEEechhhHH
Q 032763 2 QSFKSREYVRET------FAWMHYYWYLTNDGIE 29 (134)
Q Consensus 2 qSLkSrg~Vke~------FaWrh~Yw~LTneGI~ 29 (134)
+.|.+.|+|... -.|..+||.|+.+-|.
T Consensus 55 ~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~ 88 (110)
T 1q1h_A 55 NLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQIN 88 (110)
T ss_dssp HHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC
T ss_pred HHHHHCCCEEEEecccCCCceEEEEeecCHHHHH
Confidence 467888998654 5788889999998873
No 103
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=47.40 E-value=4.6 Score=30.44 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=27.2
Q ss_pred CCcccccccceeeecceeEEEechhhHH--------------HHHHhhCCCCCCc
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIE--------------FLRTYLNLPSEIV 42 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~--------------yLR~yLhLP~eiv 42 (134)
+.|..+|||.-.= +.+++||++|.+ ||.+.|+++++.+
T Consensus 42 ~~Le~~GlV~r~~---~~~i~LT~~G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~ 93 (214)
T 3hrs_A 42 KKLLAEELLIKDK---KAGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEI 93 (214)
T ss_dssp HHHHHTTSEEEET---TTEEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHCCCEEEec---CCCeEECHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 4678899997652 357899999976 3445678887643
No 104
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=46.84 E-value=4.3 Score=31.86 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=25.4
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhhCCC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLP 38 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhLP 38 (134)
+.|..+|||+.. =+...|.||++|.+.+..+..+|
T Consensus 188 ~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~ 222 (244)
T 2wte_A 188 AELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVI 222 (244)
T ss_dssp HHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC---
T ss_pred HHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhccc
Confidence 568899999875 24567889999999888755554
No 105
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=44.74 E-value=4.3 Score=29.21 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=21.5
Q ss_pred CCcccccccceeee---cceeEEEechhhHHHH
Q 032763 2 QSFKSREYVRETFA---WMHYYWYLTNDGIEFL 31 (134)
Q Consensus 2 qSLkSrg~Vke~Fa---Wrh~Yw~LTneGI~yL 31 (134)
+.|...|+|...-. =+..+|.||++|.+.+
T Consensus 62 ~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 62 RELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 45777888876532 2578999999996543
No 106
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=41.54 E-value=4.8 Score=30.34 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=21.7
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHH
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLR 32 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR 32 (134)
+.|..+|||.-.-. -+++||++|.+.+.
T Consensus 46 ~~Le~~GlV~r~~~---~~v~LT~~G~~~~~ 73 (230)
T 1fx7_A 46 SRMERDGLLRVAGD---RHLELTEKGRALAI 73 (230)
T ss_dssp HHHHHTTSEEECTT---SCEEECHHHHHHHH
T ss_pred HHHHHCCCEEEeCC---ccEEECHHHHHHHH
Confidence 46788999987654 37899999987754
No 107
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=39.11 E-value=11 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=24.7
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~y 34 (134)
+.|...+||.-.-.-|.....||++|.+++...
T Consensus 49 ~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 49 IDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp HHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 346667777665555788999999999887654
No 108
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=37.33 E-value=8.8 Score=26.52 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=19.8
Q ss_pred CCcccccccceeeecceeEE--EechhhH--HHHHHhh
Q 032763 2 QSFKSREYVRETFAWMHYYW--YLTNDGI--EFLRTYL 35 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw--~LTneGI--~yLR~yL 35 (134)
+.|..+|||+-.-.-|.+.| +||.+|. +-+++.+
T Consensus 50 ~rLe~kGlv~r~~~~r~~~~~~~lt~~~~~~~~~~~~~ 87 (138)
T 2g9w_A 50 QRLAKKNLVLQIRDDRAHRYAPVHGRDELVAGLMVDAL 87 (138)
T ss_dssp HHHHHTTSEEEEC---CCEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEecCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 45788999986655554444 4788885 3344433
No 109
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=36.86 E-value=8.5 Score=26.55 Aligned_cols=30 Identities=10% Similarity=0.073 Sum_probs=21.8
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||...-. ..++||++|.+.+...
T Consensus 76 ~~Le~~Glv~r~~~---~~~~lT~~g~~~~~~~ 105 (155)
T 2h09_A 76 KRLATMGLIEMIPW---RGVFLTAEGEKLAQES 105 (155)
T ss_dssp HHHHHTTCEEEETT---TEEEECHHHHHHHHHH
T ss_pred HHHHHCCCEEEecC---CceEEChhHHHHHHHH
Confidence 45778899876532 4678999998876653
No 110
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=33.96 E-value=3.6 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=19.8
Q ss_pred CCcccccccce--eeecceeEEEechhhH
Q 032763 2 QSFKSREYVRE--TFAWMHYYWYLTNDGI 28 (134)
Q Consensus 2 qSLkSrg~Vke--~FaWrh~Yw~LTneGI 28 (134)
+.|.+.|+|.. .-.-+..||.|+++.+
T Consensus 36 ~~L~~~GlI~~~~~~~gr~~~y~l~~~~~ 64 (81)
T 2htj_A 36 LLLEKAGMVQRSPLRRGMATYWFLKGEKQ 64 (81)
T ss_dssp HHHHHHTSEEEECCSSSSSCEEEESSCSS
T ss_pred HHHHHCCCEEEeccCCCCcEEEEEChhhh
Confidence 46788999983 3456778999988644
No 111
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=33.83 E-value=6.6 Score=27.42 Aligned_cols=33 Identities=18% Similarity=0.048 Sum_probs=19.7
Q ss_pred CCcccccccceeee--cceeEEEechhhHHHHHHh
Q 032763 2 QSFKSREYVRETFA--WMHYYWYLTNDGIEFLRTY 34 (134)
Q Consensus 2 qSLkSrg~Vke~Fa--Wrh~Yw~LTneGI~yLR~y 34 (134)
+.|..+|||...-. =|-.+-+||++|.+.+.+-
T Consensus 74 ~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~~~ 108 (148)
T 4fx0_A 74 EVMRRDGLVRVMAGADARCKRIELTAKGRAALQKA 108 (148)
T ss_dssp HHHHHTTSBC-----------CCBCHHHHHHHHHH
T ss_pred HHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHHHH
Confidence 35778899954332 2567889999999988764
No 112
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=33.38 E-value=6.8 Score=25.35 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=17.8
Q ss_pred CCcccccccceeeecceeEEEechhhH
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGI 28 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI 28 (134)
+.|...|+|+..- . ||.||++|.
T Consensus 65 ~~L~~~Glv~~~~--g--~y~l~~~g~ 87 (96)
T 1y0u_A 65 KVLEAGFCIERVG--E--RWVVTDAGK 87 (96)
T ss_dssp HHHHHTTSEEEET--T--EEEECTTTC
T ss_pred HHHHHCCCEEEEC--C--EEEECCCch
Confidence 4578889998654 2 889999884
No 113
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=30.35 E-value=7.4 Score=29.58 Aligned_cols=29 Identities=3% Similarity=0.023 Sum_probs=23.2
Q ss_pred CCcccccccceeee-----cceeEEEechhhHHH
Q 032763 2 QSFKSREYVRETFA-----WMHYYWYLTNDGIEF 30 (134)
Q Consensus 2 qSLkSrg~Vke~Fa-----Wrh~Yw~LTneGI~y 30 (134)
+.|...|+|+..-. -+..||.||++++.-
T Consensus 50 k~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~~~~ 83 (202)
T 2p4w_A 50 RILEEAGLIESRVEKIPRGRPRKYYMIKKGLRLE 83 (202)
T ss_dssp HHHHHTTSEEEEECCBTTBCCCEEEEECTTEEEE
T ss_pred HHHHHCCceEEEeeccCCCCceEEEEEChHHHHH
Confidence 45788899987655 788999999999843
No 114
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=27.27 E-value=24 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=28.6
Q ss_pred eeeecceeEEEechhhHHHHHHhhCCCCCCccccccc
Q 032763 12 ETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKK 48 (134)
Q Consensus 12 e~FaWrh~Yw~LTneGI~yLR~yLhLP~eivPaTlkk 48 (134)
+.|.|=|++- .|.+=+++|.+.++|++.++=..+..
T Consensus 40 ~~~~Wi~l~~-p~~~e~~~l~~~~~l~~l~~ed~~~~ 75 (264)
T 3nvo_A 40 QHPCWLHLNY-THPDSARWLASTPLLPNNVRDALAGE 75 (264)
T ss_dssp TSCEEEEEET-TSHHHHHHHHHCTTSCTTTHHHHTTC
T ss_pred CCCEEEEeCC-CCHHHHHHHHhccCCCHHHHHHHhCC
Confidence 4678888875 88899999999999998877655543
No 115
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=26.78 E-value=28 Score=25.49 Aligned_cols=15 Identities=40% Similarity=0.822 Sum_probs=12.0
Q ss_pred chhhH-HHHHHhhCCCC
Q 032763 24 TNDGI-EFLRTYLNLPS 39 (134)
Q Consensus 24 TneGI-~yLR~yLhLP~ 39 (134)
|.+|| .||.+ |+.|+
T Consensus 37 TAKGifKyL~e-lGvPa 52 (115)
T 2es9_A 37 TAKGILKYLHD-LGVPV 52 (115)
T ss_dssp HHHHHHHHHHH-TTCCC
T ss_pred HHHHHHHHHHH-cCCCC
Confidence 67899 89987 88764
No 116
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=25.29 E-value=19 Score=28.22 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=23.1
Q ss_pred CCcccccccceeeecceeEEEechhhHHHHHHhhCC
Q 032763 2 QSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNL 37 (134)
Q Consensus 2 qSLkSrg~Vke~FaWrh~Yw~LTneGI~yLR~yLhL 37 (134)
+-|+++|||.-.= -+-+||++|.+++.+-...
T Consensus 52 kkL~e~GLV~~~~----~Gv~LTe~G~~~A~~i~~r 83 (200)
T 2p8t_A 52 RKLSHLDIIRSKQ----RGHFLTLKGKEIRDKLLSM 83 (200)
T ss_dssp HHHHHTTSEEEC------CEEECHHHHHHHHHHHTT
T ss_pred HHHHHCCCEEEeC----CCeEECHHHHHHHHHHHHH
Confidence 4588899985443 4779999999888765543
No 117
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=25.26 E-value=37 Score=27.39 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=23.4
Q ss_pred CcccccccceeeecceeEEEechhhHHHHH
Q 032763 3 SFKSREYVRETFAWMHYYWYLTNDGIEFLR 32 (134)
Q Consensus 3 SLkSrg~Vke~FaWrh~Yw~LTneGI~yLR 32 (134)
-|+++|+|.-.=.=|--||.||+.|.+-|+
T Consensus 68 RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~ 97 (266)
T 3l09_A 68 RLKRDGWVESRRLGRVGFHRLSDSALTQTR 97 (266)
T ss_dssp HHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHCCCeeeeecCCcceEEECHHHHHHHH
Confidence 367888887664455669999999999884
No 118
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=21.86 E-value=13 Score=21.06 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=10.5
Q ss_pred eecceeEEEechhhHH
Q 032763 14 FAWMHYYWYLTNDGIE 29 (134)
Q Consensus 14 FaWrh~Yw~LTneGI~ 29 (134)
.-|+..+|. |.||.
T Consensus 5 ~~Wqq~~y~--DSGI~ 18 (26)
T 1p22_C 5 SHWQQQSYL--DSGIH 18 (26)
T ss_pred hhhhhcCcc--ccccc
Confidence 459887774 99985
No 119
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=20.96 E-value=48 Score=22.70 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=11.2
Q ss_pred HHHHHHhhCCCCC
Q 032763 28 IEFLRTYLNLPSE 40 (134)
Q Consensus 28 I~yLR~yLhLP~e 40 (134)
|.+||..|+|+++
T Consensus 36 ~~~lRkrL~l~~~ 48 (91)
T 4gdk_A 36 IDFIKKFLKLVAS 48 (91)
T ss_dssp HHHHHHHTTCCSS
T ss_pred HHHHHHHhCCCCC
Confidence 6899999999754
Done!