BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032764
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NEU|A Chain A, Structure Of Myelin Membrane Adhesion Molecule P0
Length = 124
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 43 EVYGFVGSITTV---------VATGIFLVWAYVPERCLNAIGIYYY 79
EVYG VGS T+ V+ I W Y PE +AI I++Y
Sbjct: 8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHY 53
>pdb|3OAI|A Chain A, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
pdb|3OAI|B Chain B, Crystal Structure Of The Extra-Cellular Domain Of Human
Myelin Protein Zero
Length = 507
Score = 29.3 bits (64), Expect = 0.69, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 43 EVYGFVGSITTV---------VATGIFLVWAYVPERCLNAIGIYYY 79
EV+G VGS T+ V+ I W Y PE +AI I++Y
Sbjct: 394 EVHGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHY 439
>pdb|1PSS|L Chain L, Crystallographic Analyses Of Site-Directed Mutants Of The
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1PST|L Chain L, Crystallographic Analyses Of Site-Directed Mutants Of The
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 266
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 79 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 129
>pdb|1FNQ|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Glu From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|1FNP|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Phe From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|3V3Z|L Chain L, I(L177)h Mutant Structure Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
Length = 281
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|2WX5|L Chain L, Hexa-Coordination Of A Bacteriochlorophyll Cofactor In The
Rhodobacter Sphaeroides Reaction Centre
Length = 281
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|3DTR|L Chain L, E(L212)q, L(L227)f Double Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 281
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|3DSY|L Chain L, E(L212)q Mutant Structure Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
pdb|3DTA|L Chain L, E(L212)q, N(M44)d Double Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 281
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|1F6N|L Chain L, Crystal Structure Analysis Of The Mutant Reaction Center
Pro L209-> Tyr From The Photosynthetic Purple Bacterium
Rhodobacter Sphaeroides
Length = 281
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|1YST|L Chain L, Structure Of The Photochemical Reaction Center Of A
Spheroidene Containing Purple Bacterium, Rhodobacter
Sphaeroides Y, At 3 Angstroms Resolution
Length = 273
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|3ZUM|L Chain L, Photosynthetic Reaction Centre Mutant With Phe L146
Replaced With Ala
Length = 281
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|3V3Y|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides Strain Rv
Length = 281
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|1RVJ|L Chain L, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg H177 Replaced With His
pdb|1RY5|L Chain L, Photosynthetic Reaction Center Mutant From Rhodobacter
Sphaeroides With Asp L213 Replaced With Asn
pdb|1RZH|L Chain L, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Neutral
Dqaqb State (Trigonal Form)
pdb|1RZZ|L Chain L, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Neutral
Dqaqb State (Tetragonal Form)
pdb|1RZZ|R Chain R, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Neutral
Dqaqb State (Tetragonal Form)
pdb|1S00|L Chain L, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Separated
D+qaqb- State
pdb|1S00|R Chain R, Photosynthetic Reaction Center Double Mutant From
Rhodobacter Sphaeroides With Asp L213 Replaced With Asn
And Arg M233 Replaced With Cys In The Charge-Separated
D+qaqb- State
Length = 281
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|2GMR|L Chain L, Photosynthetic Reaction Center Mutant From Rhodobacter
Sphaeroides With Asp L210 Replaced With Asn
Length = 281
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|1JH0|L Chain L, Photosynthetic Reaction Center Mutant With Glu L 205
Replaced To Leu
Length = 281
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 50 SITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 87 QIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|2RCR|L Chain L, Structure Of The Membrane-Bound Protein Photosynthetic
Reaction Center From Rhodobacter Sphaeroides
pdb|4RCR|L Chain L, Structure Of The Reaction Center From Rhodobacter
Sphaeroides R-26 And 2.4.1: Protein-Cofactor
(Bacteriochlorophyll, Bacteriopheophytin, And
Carotenoid) Interactions
pdb|1PCR|L Chain L, Structure Of The Photosynthetic Reaction Centre From
Rhodobacter Sphaeroides At 2.65 Angstroms Resolution:
Cofactors And Protein- Cofactor Interactions
pdb|1AIG|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb-Charge Separated State
pdb|1AIG|N Chain N, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The D+qb-Charge Separated State
pdb|1AIJ|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1AIJ|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State
pdb|1MPS|L Chain L, Photosynthetic Reaction Center Mutant With Phe M 197
Replaced With Arg And Tyr M 177 Replaced With Phe (Chain
M, Y177f, F197r)
pdb|1QOV|L Chain L, Photosynthetic Reaction Center Mutant With Ala M260
Replaced With Trp (Chain M, A260w)
pdb|1DS8|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DS8|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Cd2+
pdb|1DV3|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb-State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV3|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Separated D+qaqb-State With
The Proton Transfer Inhibitor Cd2+
pdb|1DV6|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1DV6|R Chain R, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides In The Charge-Neutral Dqaqb State With The
Proton Transfer Inhibitor Zn2+
pdb|1E14|L Chain L, Photosynthetic Reaction Center Mutant With Phe M197
Replaced With Arg (Chain M, Fm197r) And Gly M203
Replaced With Asp (Chain M, Gm203d)
pdb|1E6D|L Chain L, Photosynthetic Reaction Center Mutant With Trp M115
Replaced With Phe (Chain M, Wm115f) Phe M197 Replaced
With Arg (Chain M, Fm197r)
pdb|1JGW|L Chain L, Photosynthetic Reaction Center Mutant With Thr M 21
Replaced With Leu
pdb|1JGX|L Chain L, Photosynthetic Reaction Center Mutant With Thr M 21
Replaced With Asp
pdb|1JGY|L Chain L, Photosynthetic Reaction Center Mutant With Tyr M 76
Replaced With Phe
pdb|1JGZ|L Chain L, Photosynthetic Reaction Center Mutant With Tyr M 76
Replaced With Lys
pdb|1L9B|L Chain L, X-ray Structure Of The Cytochrome-c(2)-photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type Ii Co- Crystals
pdb|1L9J|L Chain L, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1L9J|R Chain R, X-Ray Structure Of The Cytochrome-C(2)-Photosynthetic
Reaction Center Electron Transfer Complex From
Rhodobacter Sphaeroides In Type I Co- Crystals
pdb|1K6L|L Chain L, Photosynethetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1M3X|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|1KBY|L Chain L, Structure Of Photosynthetic Reaction Center With
Bacteriochlorophyll- Bacteriopheophytin Heterodimer
pdb|1OGV|L Chain L, Lipidic Cubic Phase Crystal Structure Of The
Photosynthetic Reaction Centre From Rhodobacter
Sphaeroides
pdb|1RG5|L Chain L, Structure Of The Photosynthetic Reaction Centre From
Rhodobacter Sphaeroides Carotenoidless Strain R-26.1
pdb|1RGN|L Chain L, Structure Of The Reaction Centre From Rhodobacter
Sphaeroides Carotenoidless Strain R-26.1 Reconstituted
With Spheroidene
pdb|1RQK|L Chain L, Structure Of The Reaction Centre From Rhodobacter
Sphaeroides Carotenoidless Strain R-26.1 Reconstituted
With 3,4- Dihydrospheroidene
pdb|1UMX|L Chain L, Photosynthetic Reaction Center Mutant With Arg M267
Replaced With Leu (Chain M, R267l)
pdb|2BOZ|L Chain L, Photosynthetic Reaction Center Mutant With Gly M203
Replaced With Leu
pdb|1Z9K|A Chain A, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|2BNP|A Chain A, Lipidic Cubic Phase Grown Reaction Centre From Rhodobacter
Sphaeroides, Ground State
pdb|2BNS|A Chain A, Lipidic Cubic Phase Grown Reaction Centre From Rhodobacter
Sphaeroides, Excited State
pdb|2GNU|L Chain L, The Crystallization Of Reaction Center From Rhodobacter
Sphaeroides Occurs Via A New Route
pdb|2HG3|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Brominated Phosphatidylcholine
pdb|2HG9|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Tetrabrominated Phosphatidylcholine
pdb|2HH1|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylcholine
pdb|2HHK|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylglycerol
pdb|2HIT|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylethanolamine
pdb|2HJ6|L Chain L, Reaction Centre From Rhodobacter Sphaeroides Strain R-26.1
Complexed With Dibrominated Phosphatidylserine
pdb|2J8C|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 8 In The
Neutral State
pdb|2J8D|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 8 In The
Charge- Separated State
pdb|2UWS|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State
pdb|2UWT|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State 2nd Dataset
pdb|2UWU|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Neutral State, 2nd Dataset
pdb|2UWV|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Charge-Separated State, 3rd Dataset
pdb|2UWW|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 6.5 In The
Neutral State
pdb|2UX3|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Neutral State
pdb|2UX4|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Charge- Separated State, 2nd Dataset
pdb|2UX5|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 9 In The
Charge- Separated State
pdb|2UXJ|L Chain L, X-ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Neutral State
pdb|2UXK|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Charge-Separated State
pdb|2UXL|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Neutral State, 2nd Dataset
pdb|2UXM|L Chain L, X-Ray High Resolution Structure Of The Photosynthetic
Reaction Center From Rb. Sphaeroides At Ph 10 In The
Charge-Separated State, 2nd Dataset
pdb|2JIY|L Chain L, Photosynthetic Reaction Center Mutant With Ala M149
Replaced With Trp (Chain M, Am149w)
pdb|2JJ0|L Chain L, Photosynthetic Reaction Center Mutant With Ala M248
Replaced With Trp (Chain M, Am248w)
pdb|3I4D|L Chain L, Photosynthetic Reaction Center From Rhodobacter
Sphaeroides 2.4.1
pdb|4H99|L Chain L, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Thr
pdb|4H9L|L Chain L, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Ser
pdb|4HBH|L Chain L, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Asn
pdb|4HBJ|L Chain L, Bacterial Photosynthetic Reaction Center From Rhodobacter
Sphaeroides With Ile M265 Replaced With Gln
Length = 281
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|3DU2|L Chain L, E(L212)a Mutant Structure Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
Length = 281
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|1YF6|L Chain L, Structure Of A Quintuple Mutant Of Photosynthetic Reaction
Center From Rhodobacter Sphaeroides
Length = 281
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|1K6N|L Chain L, E(L212)a,D(L213)a Double Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|3DTS|L Chain L, E(L212)a, D(L213)a, R(M233)l Triple Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
pdb|3DU3|L Chain L, E(L212)a, D(L213)a, A(M249)y Triple Mutant Structure Of
Photosynthetic Reaction Center
pdb|3DUQ|L Chain L, E(L212)a, D(L213)a, N(M5)d Triple Mutant Structure Of
Photosynthetic Reaction Center From Rhodobacter
Sphaeroides
Length = 281
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ AY +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAY--LTLVL 133
>pdb|2BF1|A Chain A, Structure Of An Unliganded And Fully-Glycosylated Siv
Gp120 Envelope Glycoprotein
pdb|3FUS|A Chain A, Improved Structure Of The Unliganded Simian
Immunodeficiency Virus Gp120 Core
Length = 316
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 25 SFLDQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYY 79
+ L +D YSGF PK S+V V S T ++ T + + R N IY++
Sbjct: 79 ALLRCNDTNYSGFMPKCSKV--VVSSCTRMMETQTSTWFGFNGTRAENRTYIYWH 131
>pdb|3ZUW|L Chain L, Photosynthetic Reaction Centre Mutant With Tyr L128
Replaced With His
Length = 281
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL 98
G + I T+ ATG F+ WA +GI Y+ +A A+ A+ +TLVL
Sbjct: 83 GGLWQIITICATGAFVSWALREVEICRKLGIGYHIPFAFAFAILAH--LTLVL 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,727,156
Number of Sequences: 62578
Number of extensions: 133823
Number of successful extensions: 306
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 25
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)