BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032764
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64792|PIGP_ARATH Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
OS=Arabidopsis thaliana GN=At1g61280 PE=2 SV=1
Length = 137
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 74/83 (89%)
Query: 38 GPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLV 97
GPKTSEVYGFVGSI+ VVAT IFL+W YVP++ L +IGIYYYPS+YWA+A+P Y+MVTL+
Sbjct: 10 GPKTSEVYGFVGSISIVVATVIFLIWGYVPDKFLESIGIYYYPSKYWAMAMPMYSMVTLL 69
Query: 98 LALVFYIGLNFMSTPSPTSLNKI 120
+ALVFYIGLNFMST PTSLN +
Sbjct: 70 VALVFYIGLNFMSTSKPTSLNTL 92
>sp|Q9JHG1|PIGP_MOUSE Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
OS=Mus musculus GN=Pigp PE=2 SV=1
Length = 132
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 53/77 (68%)
Query: 44 VYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFY 103
+YGFV +++ ++LVWA+VPE LN++G+ Y+P +YWA+A+P Y ++T+V+ V
Sbjct: 14 IYGFVLFLSSQFGFILYLVWAFVPESWLNSLGLTYWPQKYWAVALPVYLLITVVIGYVLL 73
Query: 104 IGLNFMSTPSPTSLNKI 120
G+N MST S++ I
Sbjct: 74 FGINMMSTSPLDSIHTI 90
>sp|P57054|PIGP_HUMAN Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
OS=Homo sapiens GN=PIGP PE=1 SV=3
Length = 158
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 44 VYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFY 103
+YGFV +++ ++LVWA++PE LN++G+ Y+P +YWA+A+P Y ++ +V+ V
Sbjct: 38 IYGFVLFLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWAVALPVYLLIAIVIGYVLL 97
Query: 104 IGLNFMSTPSPTSLNKI 120
G+N MST S++ I
Sbjct: 98 FGINMMSTSPLDSIHTI 114
>sp|Q5R946|PIGP_PONAB Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
OS=Pongo abelii GN=PIGP PE=2 SV=1
Length = 134
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 52/77 (67%)
Query: 44 VYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFY 103
+YGFV +++ ++LVWA++PE LN++G+ Y+P +YWA+A+P Y ++ +V+ V
Sbjct: 14 IYGFVLFLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWAVALPVYLLIAIVIGYVLL 73
Query: 104 IGLNFMSTPSPTSLNKI 120
G+N MST S++ I
Sbjct: 74 FGINMMSTSPLDSIHTI 90
>sp|O13904|MUG84_SCHPO Meiotically up-regulated gene 84 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug84 PE=1 SV=3
Length = 195
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 18 KRRRATVSFLDQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIY 77
++ +DQ D P T E YGFV + +++ G+++VWA P L I+
Sbjct: 59 DEEGTAIAEIDQQDWDIMVKVP-TYEYYGFVMYLVSMLGFGVYIVWALTPAPVLKFFEIH 117
Query: 78 YYPSRYWALAVPAYAMVTLVLALVFYIGLNFMST 111
YY SR+WALA+P + VL + ++ LN +T
Sbjct: 118 YYLSRWWALAIPTWL---FVLVIYIHVVLNAYNT 148
>sp|Q4G3A7|RPOB_EMIHU DNA-directed RNA polymerase subunit beta OS=Emiliania huxleyi
GN=rpoB PE=3 SV=1
Length = 1093
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 5 HSVNSPRRILSFSKRRRATVS---FLDQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFL 61
+++N PR L +KR+ AT S F+ G P+ +V F+G I + +G FL
Sbjct: 58 YTINPPRYTLEEAKRKDATYSVRIFIRAQLNYLEGADPQEKQV--FLGDIPLMTDSGTFL 115
Query: 62 VWA---YVPERCLNAIGIYY 78
V + + + + GIYY
Sbjct: 116 VNGIERIIINQIVRSPGIYY 135
>sp|P06907|MYP0_RAT Myelin protein P0 OS=Rattus norvegicus GN=Mpz PE=1 SV=1
Length = 248
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 43 EVYGFVGSITTV---------VATGIFLVWAYVPERCLNAIGIYYY 79
EVYG VGS T+ V+ I W Y PE +AI I++Y
Sbjct: 37 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHY 82
>sp|P27573|MYP0_MOUSE Myelin protein P0 OS=Mus musculus GN=Mpz PE=1 SV=1
Length = 248
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 43 EVYGFVGSITTV---------VATGIFLVWAYVPERCLNAIGIYYY 79
E+YG VGS T+ V+ I W Y PE +AI I++Y
Sbjct: 37 EIYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHY 82
>sp|Q6WEB5|MYP0_HORSE Myelin protein P0 OS=Equus caballus GN=MPZ PE=2 SV=1
Length = 248
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 42 SEVYGFVGSITTV---------VATGIFLVWAYVPERCLNAIGIYYY 79
EVYG VGS T+ V+ I W Y PE +AI I++Y
Sbjct: 36 KEVYGAVGSRVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHY 82
>sp|Q8WTT0|CLC4C_HUMAN C-type lectin domain family 4 member C OS=Homo sapiens GN=CLEC4C
PE=2 SV=1
Length = 213
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/51 (21%), Positives = 31/51 (60%)
Query: 75 GIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQR 125
G++++ + W++AV + ++++ + + NFM + + L+K+R +Q+
Sbjct: 13 GLWWFQLKVWSMAVVSILLLSVCFTVSSVVPHNFMYSKTVKRLSKLREYQQ 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,513,589
Number of Sequences: 539616
Number of extensions: 1736048
Number of successful extensions: 4747
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4734
Number of HSP's gapped (non-prelim): 22
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)