Query 032764
Match_columns 134
No_of_seqs 108 out of 177
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 05:39:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08510 PIG-P: PIG-P; InterP 100.0 2.7E-39 5.8E-44 240.3 9.2 92 41-132 2-93 (126)
2 KOG2257 N-acetylglucosaminyltr 100.0 9.3E-34 2E-38 214.7 7.0 93 38-130 3-96 (135)
3 PF07297 DPM2: Dolichol phosph 97.7 0.00019 4E-09 50.6 6.6 60 45-108 6-70 (78)
4 KOG3488 Dolichol phosphate-man 93.9 0.37 8.1E-06 34.0 6.8 62 44-109 7-73 (81)
5 TIGR01332 cyt_b559_alpha cytoc 57.7 2.5 5.3E-05 30.0 -0.7 36 82-118 17-55 (80)
6 CHL00064 psbE photosystem II p 56.1 2.3 4.9E-05 30.4 -1.1 37 81-118 17-56 (83)
7 PRK02557 psbE cytochrome b559 56.1 2.5 5.4E-05 30.1 -0.9 37 81-118 17-56 (81)
8 PF11169 DUF2956: Protein of u 50.0 15 0.00033 27.2 2.4 21 43-63 83-103 (103)
9 PF03994 DUF350: Domain of Unk 46.9 6.5 0.00014 24.7 0.0 33 91-125 1-33 (54)
10 COG0838 NuoA NADH:ubiquinone o 45.4 85 0.0018 23.7 5.8 54 15-68 30-88 (123)
11 PF05545 FixQ: Cbb3-type cytoc 44.7 17 0.00037 22.5 1.7 24 46-69 11-34 (49)
12 KOG3462 Predicted membrane pro 44.4 40 0.00086 25.0 3.8 51 6-64 3-55 (105)
13 PF08629 PDE8: PDE8 phosphodie 41.6 18 0.00039 23.7 1.5 17 2-19 19-35 (52)
14 PF11874 DUF3394: Domain of un 40.7 19 0.00042 28.9 1.9 18 79-97 155-172 (183)
15 PF06916 DUF1279: Protein of u 40.3 36 0.00077 23.7 3.0 29 80-108 7-35 (91)
16 KOG4455 Uncharacterized conser 40.3 22 0.00048 26.7 1.9 44 41-91 46-89 (110)
17 PF09726 Macoilin: Transmembra 40.2 29 0.00062 33.0 3.2 59 46-108 74-137 (697)
18 PRK10633 hypothetical protein; 35.8 1.2E+02 0.0027 21.3 5.1 53 52-116 18-76 (80)
19 PF08196 UL2: UL2 protein; In 34.0 38 0.00083 22.7 2.1 35 30-66 14-50 (60)
20 PRK14750 kdpF potassium-transp 33.0 45 0.00097 19.6 2.1 16 92-107 10-25 (29)
21 PF14163 SieB: Superinfection 32.5 1.4E+02 0.0031 22.1 5.4 18 65-82 14-31 (151)
22 PF09930 DUF2162: Predicted tr 28.8 1.2E+02 0.0027 24.9 4.8 52 43-97 64-115 (224)
23 PF09591 DUF2463: Protein of u 26.2 2.1E+02 0.0046 23.6 5.7 25 77-101 172-203 (210)
24 PF00283 Cytochrom_B559: Cytoc 26.0 45 0.00098 19.5 1.3 14 81-94 12-28 (29)
25 PF13687 DUF4153: Domain of un 25.7 60 0.0013 25.6 2.4 25 72-98 149-173 (217)
26 PF07853 DUF1648: Protein of u 25.6 1.1E+02 0.0024 18.8 3.2 39 55-93 7-50 (51)
27 PF04341 DUF485: Protein of un 24.6 72 0.0016 22.2 2.4 24 43-66 56-79 (91)
28 PF14589 NrfD_2: Polysulfide r 22.8 3.5E+02 0.0076 22.6 6.3 63 41-108 42-134 (251)
29 PF15012 DUF4519: Domain of un 22.0 22 0.00047 23.8 -0.7 25 80-104 27-51 (56)
30 PF07811 TadE: TadE-like prote 20.6 1.9E+02 0.0041 16.7 3.5 23 84-106 7-29 (43)
No 1
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=100.00 E-value=2.7e-39 Score=240.31 Aligned_cols=92 Identities=35% Similarity=0.682 Sum_probs=89.3
Q ss_pred cceeehhHHHHHHHHHHHHHHhhhccChhHHHHhCceeccCcchhhhHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 032764 41 TSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLNKI 120 (134)
Q Consensus 41 ~~e~YGFv~~i~s~~~~~lyllWa~lP~~~L~~lgity~P~kyWAlaiP~~ll~~~l~~~~~Y~~~N~~~Tppldsl~tI 120 (134)
++|+|||++|++++++|++|++|||+||++||++|++||||||||+|+|||++|++++++++|.++|+++|||+||++||
T Consensus 2 ~~e~YGFv~~i~s~~~~~lyl~Wa~lP~~~L~~lgity~P~kyWAlaiP~~~l~~~l~~~~~y~~~N~~~T~pld~~~ti 81 (126)
T PF08510_consen 2 SREYYGFVLYILSTVAFVLYLLWAFLPDEWLHSLGITYYPDKYWALAIPSWLLMAMLFTYVGYPAYNLVLTPPLDSLRTI 81 (126)
T ss_pred CceeeehHHHHHHHHHHHHHHHHHhcCHHHHHhcCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccee
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcceEEecC
Q 032764 121 RVHQRSFFILTG 132 (134)
Q Consensus 121 tD~~a~~~i~~~ 132 (134)
+|+++++...++
T Consensus 82 ~D~~~~~~~~~~ 93 (126)
T PF08510_consen 82 TDEYARVPDEDD 93 (126)
T ss_pred eccccccccccc
Confidence 999999877654
No 2
>KOG2257 consensus N-acetylglucosaminyltransferase complex, subunit PIG-P, required for phosphatidylinositol biosynthesis [Function unknown]
Probab=100.00 E-value=9.3e-34 Score=214.72 Aligned_cols=93 Identities=42% Similarity=0.697 Sum_probs=87.9
Q ss_pred CCccceeehhHHHHHHHHHHHHHHhhhccChhHHHHhCceeccCcchhhhHhHHHHHHHHHHHHHHHHHHh-hcCCCCCC
Q 032764 38 GPKTSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNF-MSTPSPTS 116 (134)
Q Consensus 38 g~~~~e~YGFv~~i~s~~~~~lyllWa~lP~~~L~~lgity~P~kyWAlaiP~~ll~~~l~~~~~Y~~~N~-~~Tpplds 116 (134)
+++++|||||++|+.++++|++||+||++|+++|+++||+||||||||+|+|.|++|++++++++|+++|+ ..|+|+||
T Consensus 3 ~~~t~e~YgF~~yiv~~~~~ViylIWai~P~~~l~~~gi~y~Psk~WalAip~~l~v~~l~~~v~ll~~N~e~tt~pl~S 82 (135)
T KOG2257|consen 3 PHPTREYYGFVLYIVSWTLFVIYLIWAITPVPILESLGITYYPSKYWALAIPTYLLVAVLLAYVFLLGYNFESTTKPLDS 82 (135)
T ss_pred CCCcceehhhHHHHHHHHHHHHHHHhhcccHHHHhhcCceeehHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999 56669999
Q ss_pred ccccccCCcceEEe
Q 032764 117 LNKIRVHQRSFFIL 130 (134)
Q Consensus 117 l~tItD~~a~~~i~ 130 (134)
++||+|+.++..+.
T Consensus 83 l~ti~D~y~r~~~e 96 (135)
T KOG2257|consen 83 LNTITDSYAREIQE 96 (135)
T ss_pred hhhhhhhhhhccch
Confidence 99999999998654
No 3
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=97.67 E-value=0.00019 Score=50.60 Aligned_cols=60 Identities=13% Similarity=0.483 Sum_probs=45.3
Q ss_pred ehhHHHHHHHHHHHHHHhhhcc-C----hhHHHHhCceeccCcchhhhHhHHHHHHHHHHHHHHHHHHh
Q 032764 45 YGFVGSITTVVATGIFLVWAYV-P----ERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNF 108 (134)
Q Consensus 45 YGFv~~i~s~~~~~lyllWa~l-P----~~~L~~lgity~P~kyWAlaiP~~ll~~~l~~~~~Y~~~N~ 108 (134)
-|+.+-..++++|+-|.+|.++ | |+.+|+ |+|.|.||+.+|..+++..+...-.+.++-+
T Consensus 6 vG~~~l~~a~~vF~YYt~WvlllPFvd~d~~i~~----~F~Pr~yAi~lP~~lll~~~~~vg~f~g~vm 70 (78)
T PF07297_consen 6 VGLLMLAVALSVFTYYTIWVLLLPFVDEDHPIHS----FFPPREYAIILPIFLLLLGLSGVGTFLGYVM 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHH----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999999999753 3 334555 7999999999999888766555444544433
No 4
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.37 Score=33.96 Aligned_cols=62 Identities=19% Similarity=0.446 Sum_probs=42.3
Q ss_pred eehhHHHHHHHHHHHHHHhhhcc-C----hhHHHHhCceeccCcchhhhHhHHHHHHHHHHHHHHHHHHhh
Q 032764 44 VYGFVGSITTVVATGIFLVWAYV-P----ERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIGLNFM 109 (134)
Q Consensus 44 ~YGFv~~i~s~~~~~lyllWa~l-P----~~~L~~lgity~P~kyWAlaiP~~ll~~~l~~~~~Y~~~N~~ 109 (134)
.-|--+--.|...|.-|-+|-.+ | +.+.|+ |+-+|.|||++|.......++..-.++++-+.
T Consensus 7 ~vgl~lv~iSl~iFtYYT~WViilPFvDs~hiihK----yFLpr~yAi~iPvaagl~ll~lig~Fis~vMl 73 (81)
T KOG3488|consen 7 VVGLMLVYISLAIFTYYTIWVIILPFVDSMHIIHK----YFLPREYAITIPVAAGLFLLCLIGTFISLVML 73 (81)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH----HhcChhHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34555666788889999999874 4 233454 78889999999988776655544444554443
No 5
>TIGR01332 cyt_b559_alpha cytochrome b559, alpha subunit. Sequences scoring between trusted and noise cutoffs are fragments.
Probab=57.72 E-value=2.5 Score=30.03 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=27.2
Q ss_pred cchh---hhHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 032764 82 RYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLN 118 (134)
Q Consensus 82 kyWA---laiP~~ll~~~l~~~~~Y~~~N~~~Tppldsl~ 118 (134)
|||. |.||++++.+.+|...+ ++|+..-||..|..-
T Consensus 17 RYWvIHsITIPsLFiaGwLFVstG-LAYdvFGtPrpneYf 55 (80)
T TIGR01332 17 RYWVIHSITIPMLFIAGWLFVSTG-LAYDAFGTPRPNEYF 55 (80)
T ss_pred eEEEEEeechhHHHhhhhheeecC-cceeccCCCCccccc
Confidence 7885 69999999988776544 367778888877644
No 6
>CHL00064 psbE photosystem II protein V
Probab=56.12 E-value=2.3 Score=30.43 Aligned_cols=37 Identities=16% Similarity=0.514 Sum_probs=27.6
Q ss_pred Ccchh---hhHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 032764 81 SRYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLN 118 (134)
Q Consensus 81 ~kyWA---laiP~~ll~~~l~~~~~Y~~~N~~~Tppldsl~ 118 (134)
=|||. |.||++++.+.+|.-.+ ++|+..-||..|..-
T Consensus 17 iRYWvIHsITIPslFiaGwLFVstG-LAYdvFGtPrpneYf 56 (83)
T CHL00064 17 IRYWVIHSITIPSLFIAGWLFVSTG-LAYDVFGSPRPNEYF 56 (83)
T ss_pred eeeEEEEeechhHHHhhchheeecC-cceeccCCCCccccc
Confidence 37885 69999999988766544 367778888877644
No 7
>PRK02557 psbE cytochrome b559 subunit alpha; Provisional
Probab=56.10 E-value=2.5 Score=30.06 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=27.5
Q ss_pred Ccchh---hhHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 032764 81 SRYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLN 118 (134)
Q Consensus 81 ~kyWA---laiP~~ll~~~l~~~~~Y~~~N~~~Tppldsl~ 118 (134)
=|||. |.||++++.+.+|...+ ++|+..-||..|..-
T Consensus 17 iRYWvIHsITIPsLFiaGwLFVstG-LAYdvFGtPrpneYf 56 (81)
T PRK02557 17 IRYWVIHAITIPALFIAGWLFVSTG-LAYDAFGTPRPDEYF 56 (81)
T ss_pred eeEEEEEeechhHHHhhhhheeecC-ceeeccCCCCccccc
Confidence 37884 69999999988766544 367777888877654
No 8
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=50.00 E-value=15 Score=27.23 Aligned_cols=21 Identities=0% Similarity=-0.099 Sum_probs=17.2
Q ss_pred eeehhHHHHHHHHHHHHHHhh
Q 032764 43 EVYGFVGSITTVVATGIFLVW 63 (134)
Q Consensus 43 e~YGFv~~i~s~~~~~lyllW 63 (134)
..--+++-++|+++|+.|++|
T Consensus 83 ~~LPW~LL~lSW~gF~~Y~~~ 103 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGFIAYIFM 103 (103)
T ss_pred cchhHHHHHHHHHHHHHHHHC
Confidence 344567899999999999986
No 9
>PF03994 DUF350: Domain of Unknown Function (DUF350) ; InterPro: IPR007140 This motif occurs in a small set of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.
Probab=46.93 E-value=6.5 Score=24.74 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCc
Q 032764 91 YAMVTLVLALVFYIGLNFMSTPSPTSLNKIRVHQR 125 (134)
Q Consensus 91 ~ll~~~l~~~~~Y~~~N~~~Tppldsl~tItD~~a 125 (134)
|.+++++...+++..++. .|| .|.-+.|.+.+-
T Consensus 1 y~~~g~~l~~~~~~~~~~-~tp-~~~~~eI~~~N~ 33 (54)
T PF03994_consen 1 YGLVGIVLLLLGFFVFDL-LTP-YDLREEIKKGNV 33 (54)
T ss_pred CHHHHHHHHHHHHHHHHH-hcC-CChHHHHhCCCc
Confidence 456777777788888888 888 888888877643
No 10
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=45.36 E-value=85 Score=23.71 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=30.9
Q ss_pred cccccccCCCCcCCccccccCCCC----CccceeehhHHHHHHH-HHHHHHHhhhccCh
Q 032764 15 SFSKRRRATVSFLDQDDRTYSGFG----PKTSEVYGFVGSITTV-VATGIFLVWAYVPE 68 (134)
Q Consensus 15 s~~~~~~~~~~~~~p~~~~~s~~g----~~~~e~YGFv~~i~s~-~~~~lyllWa~lP~ 68 (134)
++..+|||.++-..|=|.-....| .=+..||++++-+... +-.++..-||..+.
T Consensus 30 ~lL~p~~~~~~K~~~YE~G~~p~g~a~~~f~~qyyl~ailFvvFDie~~fl~pwav~~~ 88 (123)
T COG0838 30 KLLGPRRPNPEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFLFPWAVSFK 88 (123)
T ss_pred HHhCCCCCCccccCccccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566665555555444222222 1256888888655443 44455668999886
No 11
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=44.65 E-value=17 Score=22.54 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHhhhccChh
Q 032764 46 GFVGSITTVVATGIFLVWAYVPER 69 (134)
Q Consensus 46 GFv~~i~s~~~~~lyllWa~lP~~ 69 (134)
....-++..+.|+.+++|+|-|..
T Consensus 11 ~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 334445666777788999999974
No 12
>KOG3462 consensus Predicted membrane protein [Function unknown]
Probab=44.38 E-value=40 Score=24.99 Aligned_cols=51 Identities=27% Similarity=0.443 Sum_probs=35.8
Q ss_pred ccCCCcccccccccccCCCCcC--CccccccCCCCCccceeehhHHHHHHHHHHHHHHhhh
Q 032764 6 SVNSPRRILSFSKRRRATVSFL--DQDDRTYSGFGPKTSEVYGFVGSITTVVATGIFLVWA 64 (134)
Q Consensus 6 ~~~sp~~~~s~~~~~~~~~~~~--~p~~~~~s~~g~~~~e~YGFv~~i~s~~~~~lyllWa 64 (134)
.++-|||+-... |-+|..+.+ ...|+ + ..+|-||...|++.+++.+=+=|+
T Consensus 3 ~~~DPRrp~~i~-rYkp~p~~~~~~~~eD------~-~pdYmn~lgmIfsmcGlM~r~KwC 55 (105)
T KOG3462|consen 3 SVNDPRRPNKIK-RYKPPPSAPQGAANED------P-PPDYMNFLGMIFSMCGLMFRLKWC 55 (105)
T ss_pred CCCCCCCccccc-CCCCCCCccccccccC------C-ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 457899987775 446665532 11222 2 689999999999999998877664
No 13
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=41.62 E-value=18 Score=23.70 Aligned_cols=17 Identities=41% Similarity=0.561 Sum_probs=12.9
Q ss_pred CCccccCCCccccccccc
Q 032764 2 EDRHSVNSPRRILSFSKR 19 (134)
Q Consensus 2 ~~~~~~~sp~~~~s~~~~ 19 (134)
+++.. +||||+.++|..
T Consensus 19 es~es-~sP~qTtt~SQg 35 (52)
T PF08629_consen 19 ESDES-NSPRQTTTVSQG 35 (52)
T ss_pred ccccC-CCCCcceeeecC
Confidence 34555 999999999855
No 14
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=40.66 E-value=19 Score=28.90 Aligned_cols=18 Identities=33% Similarity=0.792 Sum_probs=15.2
Q ss_pred ccCcchhhhHhHHHHHHHH
Q 032764 79 YPSRYWALAVPAYAMVTLV 97 (134)
Q Consensus 79 ~P~kyWAlaiP~~ll~~~l 97 (134)
=|.|+| +.+|++++.+++
T Consensus 155 rp~ke~-~yiPAlLLL~lv 172 (183)
T PF11874_consen 155 RPPKEW-VYIPALLLLGLV 172 (183)
T ss_pred CCCcce-EeHHHHHHHHHH
Confidence 489999 999999997664
No 15
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=40.27 E-value=36 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=23.8
Q ss_pred cCcchhhhHhHHHHHHHHHHHHHHHHHHh
Q 032764 80 PSRYWALAVPAYAMVTLVLALVFYIGLNF 108 (134)
Q Consensus 80 P~kyWAlaiP~~ll~~~l~~~~~Y~~~N~ 108 (134)
=.|||.++++.++.+.....-.+|.+++.
T Consensus 7 ~k~YG~~~l~vy~~~s~~~~~~~y~~v~~ 35 (91)
T PF06916_consen 7 FKKYGYVALGVYLGLSFISLGSCYLAVSS 35 (91)
T ss_pred HHHhCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999988777777776654
No 16
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.25 E-value=22 Score=26.69 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=26.2
Q ss_pred cceeehhHHHHHHHHHHHHHHhhhccChhHHHHhCceeccCcchhhhHhHH
Q 032764 41 TSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAY 91 (134)
Q Consensus 41 ~~e~YGFv~~i~s~~~~~lyllWa~lP~~~L~~lgity~P~kyWAlaiP~~ 91 (134)
-..++||+.|+++.+...++++|- -.--.. .||++|+ -+-+-.+
T Consensus 46 ltg~~GFi~Y~l~~~i~~il~~~K--~~~~~~----kyf~s~~-~~f~~~f 89 (110)
T KOG4455|consen 46 LTGLHGFIFYFLSVLILSILLVLK--AGGQWG----KYFQSRR-NLFTESF 89 (110)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH--HCCCHH----hhcCchh-HHHHHHH
Confidence 357899999999965555555552 111111 3788887 4444433
No 17
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=40.17 E-value=29 Score=32.99 Aligned_cols=59 Identities=15% Similarity=0.342 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHhhhccChhHHHHhCcee-ccCcchh----hhHhHHHHHHHHHHHHHHHHHHh
Q 032764 46 GFVGSITTVVATGIFLVWAYVPERCLNAIGIYY-YPSRYWA----LAVPAYAMVTLVLALVFYIGLNF 108 (134)
Q Consensus 46 GFv~~i~s~~~~~lyllWa~lP~~~L~~lgity-~P~kyWA----laiP~~ll~~~l~~~~~Y~~~N~ 108 (134)
.|..++++..+..=.++|.|||-.||--++=+| +=+=.|- +.+|..+| ++.++|+=..+
T Consensus 74 ~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~ 137 (697)
T PF09726_consen 74 AFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQYVWHTDRGICLPTVSL----WILFVYVEASV 137 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccCCccHHHHHH----HHHHHHHHHHH
Confidence 377777777777778999999999986655554 3333342 55665544 44456655444
No 18
>PRK10633 hypothetical protein; Provisional
Probab=35.83 E-value=1.2e+02 Score=21.30 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhccChhHHHHhCceeccCcchhhhHhHHHHHHHHH-----HHHHHHHHHh-hcCCCCCC
Q 032764 52 TTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVL-----ALVFYIGLNF-MSTPSPTS 116 (134)
Q Consensus 52 ~s~~~~~lyllWa~lP~~~L~~lgity~P~kyWAlaiP~~ll~~~l~-----~~~~Y~~~N~-~~Tpplds 116 (134)
++.+-|+.+.+.||+|++-. -..-+|.|+.++++. +.+.+.++.. ..--|||+
T Consensus 18 L~l~y~~~W~~~aY~~~~~~------------~i~GlP~WF~~sCi~~p~lfi~l~~~~Vk~vFkDi~Ld~ 76 (80)
T PRK10633 18 LTLLYLAAWLVAAYLPGNAP------------GFTGLPHWFEMACLLLPLLFILLCWLMVKFIFRDIPLED 76 (80)
T ss_pred HHHHHHHHHHHHHhccCCCC------------cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 44555666777788887521 155678888877744 3444555555 45556654
No 19
>PF08196 UL2: UL2 protein; InterPro: IPR013269 This entry contains Orf UL2 of Human cytomegalovirus (HHV-5) (Human herpesvirus 5), which is a short protein of unknown function [].
Probab=33.95 E-value=38 Score=22.65 Aligned_cols=35 Identities=31% Similarity=0.643 Sum_probs=22.9
Q ss_pred cccccCCCC--CccceeehhHHHHHHHHHHHHHHhhhcc
Q 032764 30 DDRTYSGFG--PKTSEVYGFVGSITTVVATGIFLVWAYV 66 (134)
Q Consensus 30 ~~~~~s~~g--~~~~e~YGFv~~i~s~~~~~lyllWa~l 66 (134)
++.+.+++| |.+-++|||-. +--+.++..++|..+
T Consensus 14 dd~~ypsfgtlpashaqygfrl--lrgif~itlviwt~v 50 (60)
T PF08196_consen 14 DDDAYPSFGTLPASHAQYGFRL--LRGIFLITLVIWTVV 50 (60)
T ss_pred CCCcCCCCCccchHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 344588887 44668999974 344455666677764
No 20
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=33.04 E-value=45 Score=19.56 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 032764 92 AMVTLVLALVFYIGLN 107 (134)
Q Consensus 92 ll~~~l~~~~~Y~~~N 107 (134)
+++.+++.|+.|..+|
T Consensus 10 llv~lLl~YLvYAL~n 25 (29)
T PRK14750 10 LLVLLLLGYLVYALFN 25 (29)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4445555555555554
No 21
>PF14163 SieB: Superinfection exclusion protein B
Probab=32.51 E-value=1.4e+02 Score=22.12 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=14.6
Q ss_pred ccChhHHHHhCceeccCc
Q 032764 65 YVPERCLNAIGIYYYPSR 82 (134)
Q Consensus 65 ~lP~~~L~~lgity~P~k 82 (134)
|+|+++++.++++-+-++
T Consensus 14 f~P~~~~~~l~l~~~~~~ 31 (151)
T PF14163_consen 14 FLPESLLEWLNLDKFEIK 31 (151)
T ss_pred HCCHHHHHHhCcchHHHh
Confidence 899999999999754444
No 22
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=28.84 E-value=1.2e+02 Score=24.88 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=37.5
Q ss_pred eeehhHHHHHHHHHHHHHHhhhccChhHHHHhCceeccCcchhhhHhHHHHHHHH
Q 032764 43 EVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLV 97 (134)
Q Consensus 43 e~YGFv~~i~s~~~~~lyllWa~lP~~~L~~lgity~P~kyWAlaiP~~ll~~~l 97 (134)
--||+..|++-.+..+..=+|+. ++|.+. |=+.-....|++.+||=.+.+.+
T Consensus 64 ~~yg~~~h~imal~li~~Gi~ti--~~W~~~-~~~~s~~t~lal~~PCPvCl~Ai 115 (224)
T PF09930_consen 64 LRYGMVIHLIMALLLIYAGIYTI--KKWKKS-GKDSSRRTFLALSLPCPVCLTAI 115 (224)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH--HHHccc-CCCCcccchhhhhcCchHHHHHH
Confidence 45888988888877777767766 666322 44566778899999997776553
No 23
>PF09591 DUF2463: Protein of unknown function (DUF2463); InterPro: IPR019081 This protein is found in eukaryotic, parasitic microsporidia. Its function is unknown.
Probab=26.19 E-value=2.1e+02 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.561 Sum_probs=18.9
Q ss_pred eeccCcc-------hhhhHhHHHHHHHHHHHH
Q 032764 77 YYYPSRY-------WALAVPAYAMVTLVLALV 101 (134)
Q Consensus 77 ty~P~ky-------WAlaiP~~ll~~~l~~~~ 101 (134)
.|.|+|. |.+++-..+++...++|.
T Consensus 172 k~~Ps~kss~pta~wRv~ifvlILil~~~iY~ 203 (210)
T PF09591_consen 172 KYFPSKKSSLPTAPWRVAIFVLILILAIFIYG 203 (210)
T ss_pred ccCCCCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 6888776 999999988876655443
No 24
>PF00283 Cytochrom_B559: Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits; InterPro: IPR013081 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. Cytochrome b559, which forms part of the reaction centre core of PSII is a heterodimer composed of one alpha subunit (PsbE), one beta (PsbF) subunit, and a haem cofactor. Two histidine residues from each subunit coordinate the haem. Although cytochrome b559 is a redox-active protein, it is unlikely to be involved in the primary electron transport in PSII due to its very slow photo-oxidation and photo-reduction kinetics. Instead, cytochrome b559 could participate in a secondary electron transport pathway that helps protect PSII from photo-damage. Cytochrome b559 is essential for PSII assembly []. This domain occurs in both the alpha and beta subunits of cytochrome B559. In the alpha sbunit it occurs together with a lumenal domain (IPR013082 from INTERPRO), while in the beta subunit it occurs on its own.; GO: 0046872 metal ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009536 plastid, 0009579 thylakoid, 0016021 integral to membrane; PDB: 3ARC_f 3A0H_f 3A0B_f 1W5C_K 1S5L_e 3BZ2_E 3PRQ_E 1IZL_P 2AXT_E 4FBY_R ....
Probab=26.02 E-value=45 Score=19.53 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=9.1
Q ss_pred Ccchh---hhHhHHHHH
Q 032764 81 SRYWA---LAVPAYAMV 94 (134)
Q Consensus 81 ~kyWA---laiP~~ll~ 94 (134)
-|||+ +++|+.++.
T Consensus 12 vR~~~IH~l~iPtvf~~ 28 (29)
T PF00283_consen 12 VRWWAIHALTIPTVFFL 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred EeeeeeeecccceEEec
Confidence 36775 577877653
No 25
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=25.71 E-value=60 Score=25.61 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=19.1
Q ss_pred HHhCceeccCcchhhhHhHHHHHHHHH
Q 032764 72 NAIGIYYYPSRYWALAVPAYAMVTLVL 98 (134)
Q Consensus 72 ~~lgity~P~kyWAlaiP~~ll~~~l~ 98 (134)
++.|+| |+|||++++=.+.....+.
T Consensus 149 ~qYGlT--~~R~~~~~~~~~~~~~~l~ 173 (217)
T PF13687_consen 149 SQYGLT--PNRYYALLLAIFLLIYALY 173 (217)
T ss_pred HHHCCC--HHHHHHHHHHHHHHHHHHH
Confidence 347777 9999999998887765543
No 26
>PF07853 DUF1648: Protein of unknown function (DUF1648); InterPro: IPR012867 This entry contains hypothetical proteins expressed by either bacterial or archaeal species. Some of these are annotated as being transmembrane proteins, and many contain a high proportion of hydrophobic residues.
Probab=25.62 E-value=1.1e+02 Score=18.80 Aligned_cols=39 Identities=8% Similarity=0.136 Sum_probs=24.8
Q ss_pred HHHHHHHhhhccChhHHHHhCc----eeccCcc-hhhhHhHHHH
Q 032764 55 VATGIFLVWAYVPERCLNAIGI----YYYPSRY-WALAVPAYAM 93 (134)
Q Consensus 55 ~~~~lyllWa~lP~~~L~~lgi----ty~P~ky-WAlaiP~~ll 93 (134)
...+..+.|..+||++--..|. +-+=+|. ..+.+|...+
T Consensus 7 ~~i~~~~~y~~LP~~ip~H~~~~G~~d~~~~K~~~~~~~p~l~~ 50 (51)
T PF07853_consen 7 PLIITLIFYPQLPDQIPTHFNANGEPDGWGSKSFGIFLLPVLML 50 (51)
T ss_pred HHHHHHHHHHHCChhhceeeCCCCCccccccHHHHHHHHHHHHh
Confidence 3445557889999998644443 4566676 6666666543
No 27
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=24.56 E-value=72 Score=22.21 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=20.9
Q ss_pred eeehhHHHHHHHHHHHHHHhhhcc
Q 032764 43 EVYGFVGSITTVVATGIFLVWAYV 66 (134)
Q Consensus 43 e~YGFv~~i~s~~~~~lyllWa~l 66 (134)
=.+|+++++.++++..+|..||=-
T Consensus 56 ~~~g~~~~~~~~~l~~~Yv~~An~ 79 (91)
T PF04341_consen 56 IVLGLGQIVFAWVLTWLYVRRANR 79 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 459999999999999999998843
No 28
>PF14589 NrfD_2: Polysulfide reductase; PDB: 2VPZ_G 2VPW_G 2VPY_G 2VPX_G.
Probab=22.77 E-value=3.5e+02 Score=22.58 Aligned_cols=63 Identities=29% Similarity=0.546 Sum_probs=40.9
Q ss_pred cceeehhHHHHHHHHHHHHHHhhhccChhH------H---------------------HHhCcee---ccCcchhhhHhH
Q 032764 41 TSEVYGFVGSITTVVATGIFLVWAYVPERC------L---------------------NAIGIYY---YPSRYWALAVPA 90 (134)
Q Consensus 41 ~~e~YGFv~~i~s~~~~~lyllWa~lP~~~------L---------------------~~lgity---~P~kyWAlaiP~ 90 (134)
..|..++..+-+..+++=++++|+=-|.++ | -..|+-| =|||.|+=++-.
T Consensus 42 ~~eARrytl~AL~lIaLDLF~LWAESPARFRFtHvWLFLSFhP~SpIWWGaWGLal~fl~~gLLyLGkGp~r~law~Ll~ 121 (251)
T PF14589_consen 42 AAEARRYTLLALGLIALDLFVLWAESPARFRFTHVWLFLSFHPTSPIWWGAWGLALSFLSGGLLYLGKGPQRFLAWALLL 121 (251)
T ss_dssp -TTHCCCHHHHHHHHHHHHHHHHCT-TTCCCT-GGGGCSS--TT-HHHHHHHHHHHHHHHHHHHHTT-S-SSTCHHHHHH
T ss_pred CHHHHhHHHHHHHHHHHHHHHHHccCccceeeeeeeeeeecCCCCchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 346667888888999999999998777642 1 0122223 399999877766
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032764 91 YAMVTLVLALVFYIGLNF 108 (134)
Q Consensus 91 ~ll~~~l~~~~~Y~~~N~ 108 (134)
+.+++. .|.++.+
T Consensus 122 fSlVaL-----aYPG~AL 134 (251)
T PF14589_consen 122 FSLVAL-----AYPGMAL 134 (251)
T ss_dssp HHHHHH-----HHHHHHH
T ss_pred HHHHHH-----cCccHHH
Confidence 666543 6776665
No 29
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=21.95 E-value=22 Score=23.76 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=19.2
Q ss_pred cCcchhhhHhHHHHHHHHHHHHHHH
Q 032764 80 PSRYWALAVPAYAMVTLVLALVFYI 104 (134)
Q Consensus 80 P~kyWAlaiP~~ll~~~l~~~~~Y~ 104 (134)
.+|--.|++|....+.+++..++|+
T Consensus 27 ~~kv~tVVlP~l~~~~~~Ivv~vy~ 51 (56)
T PF15012_consen 27 QQKVFTVVLPTLAAVFLFIVVFVYL 51 (56)
T ss_pred HHhheeEehhHHHHHHHHHhheeEE
Confidence 4667789999999888877666664
No 30
>PF07811 TadE: TadE-like protein; InterPro: IPR012495 The members of this family are similar to a region of the protein product of the bacterial tadE locus (Q9S4A6 from SWISSPROT). In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces []. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria []. All tad loci but TadA have putative transmembrane regions [], and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.
Probab=20.56 E-value=1.9e+02 Score=16.67 Aligned_cols=23 Identities=13% Similarity=0.184 Sum_probs=14.7
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHH
Q 032764 84 WALAVPAYAMVTLVLALVFYIGL 106 (134)
Q Consensus 84 WAlaiP~~ll~~~l~~~~~Y~~~ 106 (134)
.++.+|.++++.+...-+++..+
T Consensus 7 falv~Pvl~~~~~~~~~~~~~~~ 29 (43)
T PF07811_consen 7 FALVLPVLLLLLFGIVELGRMFY 29 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888877665555544443
Done!