Query 032764
Match_columns 134
No_of_seqs 108 out of 177
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 08:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_E Cytochrome B559 subunit 78.7 1.8 6.1E-05 29.9 3.2 36 82-118 17-55 (83)
2 3kp9_A Vkorc1/thioredoxin doma 23.6 1.7E+02 0.0058 23.4 6.0 59 41-105 64-122 (291)
3 4ev6_A Magnesium transport pro 10.9 5.3E+02 0.018 20.2 5.9 39 65-103 289-330 (339)
4 1hll_A Alpha-2A adrenergic rec 10.8 51 0.0018 16.8 -0.1 10 81-90 13-22 (32)
5 3ayf_A Nitric oxide reductase; 7.0 5E+02 0.017 24.0 4.7 33 98-132 34-67 (800)
6 2ksf_A Sensor protein KDPD; me 6.3 2.6E+02 0.0088 18.9 1.9 22 97-118 55-76 (107)
7 2nr9_A Protein GLPG homolog; i 6.3 5E+02 0.017 18.8 3.7 44 48-91 11-58 (196)
8 3iyz_A Aquaporin-4; water tran 6.2 7.4E+02 0.025 20.4 5.0 48 45-94 135-185 (340)
9 1q90_L Cytochrome B6F complex 5.8 4.6E+02 0.016 14.7 3.1 17 92-108 11-27 (32)
10 3ixz_A Potassium-transporting 5.5 6E+02 0.02 23.5 4.4 15 79-93 960-974 (1034)
No 1
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=78.66 E-value=1.8 Score=29.91 Aligned_cols=36 Identities=25% Similarity=0.596 Sum_probs=27.5
Q ss_pred cchh---hhHhHHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 032764 82 RYWA---LAVPAYAMVTLVLALVFYIGLNFMSTPSPTSLN 118 (134)
Q Consensus 82 kyWA---laiP~~ll~~~l~~~~~Y~~~N~~~Tppldsl~ 118 (134)
|||. |.||++++.+.+|.-.+ ++|+..-||..|..-
T Consensus 17 RYWvIHsITIPslFiaGwLFVstG-LaYdvFGtPrpneYf 55 (83)
T 3arc_E 17 RYWVIHSITIPALFIAGWLFVSTG-LAYDVFGTPRPDSYY 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHTCCCTTSSS
T ss_pred eeEEEEeeccchHHHhhhhhhccC-cceeccCCCCccccc
Confidence 7885 68999999988776644 467778888887643
No 2
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=23.57 E-value=1.7e+02 Score=23.37 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=31.5
Q ss_pred cceeehhHHHHHHHHHHHHHHhhhccChhHHHHhCceeccCcchhhhHhHHHHHHHHHHHHHHHH
Q 032764 41 TSEVYGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSRYWALAVPAYAMVTLVLALVFYIG 105 (134)
Q Consensus 41 ~~e~YGFv~~i~s~~~~~lyllWa~lP~~~L~~lgity~P~kyWAlaiP~~ll~~~l~~~~~Y~~ 105 (134)
..+.+||-.-++-.+.|.+.++.+++|-. | .=+|..+|......-+.+..+-.|+.|..
T Consensus 64 ~a~~fGiP~~~~G~~~y~~v~~l~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~fs~yL~y~~ 122 (291)
T 3kp9_A 64 WAEFLGIPTAAVGLLGFLGVLALAVLPDG-----L-PLVKRWRWPALFGLVSAMTAFEMYMLYLM 122 (291)
T ss_dssp SSEETTEEHHHHHHHHHHHHHHHHHCC-------C-TTCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhcCCcHHHHHHHHHHHHHHHHHHHhh-----c-cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567776666666666666666666621 1 22455667654443334444444555544
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=10.91 E-value=5.3e+02 Score=20.23 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=23.4
Q ss_pred ccChhHHHH-hCc--eeccCcchhhhHhHHHHHHHHHHHHHH
Q 032764 65 YVPERCLNA-IGI--YYYPSRYWALAVPAYAMVTLVLALVFY 103 (134)
Q Consensus 65 ~lP~~~L~~-lgi--ty~P~kyWAlaiP~~ll~~~l~~~~~Y 103 (134)
|+|-..+-. .|+ .+.|--.|.-+.|..+.+.++.+.+.|
T Consensus 289 flP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~ 330 (339)
T 4ev6_A 289 FAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFV 330 (339)
T ss_dssp SSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHH
Confidence 355544432 444 678998888888776655444444443
No 4
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=10.79 E-value=51 Score=16.78 Aligned_cols=10 Identities=30% Similarity=0.989 Sum_probs=6.0
Q ss_pred CcchhhhHhH
Q 032764 81 SRYWALAVPA 90 (134)
Q Consensus 81 ~kyWAlaiP~ 90 (134)
|||+||.-|.
T Consensus 13 dRy~aI~~Pl 22 (32)
T 1hll_A 13 DRYWSITQAI 22 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhh
Confidence 5666666553
No 5
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=7.02 E-value=5e+02 Score=23.95 Aligned_cols=33 Identities=6% Similarity=0.097 Sum_probs=20.6
Q ss_pred HHHHHHHHHHh-hcCCCCCCccccccCCcceEEecC
Q 032764 98 LALVFYIGLNF-MSTPSPTSLNKIRVHQRSFFILTG 132 (134)
Q Consensus 98 ~~~~~Y~~~N~-~~Tppldsl~tItD~~a~~~i~~~ 132 (134)
|+.+++.+.-. -..||+ .+.++|++|+++.+.|
T Consensus 34 f~vL~~~~~~~y~~~PPi--P~~vv~~~G~~l~T~~ 67 (800)
T 3ayf_A 34 STVLLVGGYWIFKEMAPR--PKEVRSESGEVLMTKE 67 (800)
T ss_dssp HHHHHHHHHHHHHHSCCC--CSEEECTTCCEEEEHH
T ss_pred HHHHHHHHHHHHhhCCCC--CceeECCCCCEEecHH
Confidence 44445555444 357887 3477888998776543
No 6
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=6.30 E-value=2.6e+02 Score=18.89 Aligned_cols=22 Identities=9% Similarity=0.234 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCcc
Q 032764 97 VLALVFYIGLNFMSTPSPTSLN 118 (134)
Q Consensus 97 l~~~~~Y~~~N~~~Tppldsl~ 118 (134)
+.+.+.-.++|...|||..+++
T Consensus 55 ~aa~ls~l~~nffF~~P~~sf~ 76 (107)
T 2ksf_A 55 VATVINVVSFDLFFIAPRGTLA 76 (107)
T ss_dssp HHHHHHHHHHHHTTSCSSCTTC
T ss_pred HHHHHHHHHHHHhhcCCCcccc
Confidence 3445677889999999998875
No 7
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=6.28 E-value=5e+02 Score=18.77 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhhccChh-HHHHhCcee---ccCcchhhhHhHH
Q 032764 48 VGSITTVVATGIFLVWAYVPER-CLNAIGIYY---YPSRYWALAVPAY 91 (134)
Q Consensus 48 v~~i~s~~~~~lyllWa~lP~~-~L~~lgity---~P~kyWAlaiP~~ 91 (134)
+.+.+..+..++|+++.+.+++ ..+.+++.- ...++|.+.-..+
T Consensus 11 vt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f 58 (196)
T 2nr9_A 11 ITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTL 58 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHH
Confidence 6677777778888888888764 445554431 3457888765543
No 8
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=6.15 E-value=7.4e+02 Score=20.40 Aligned_cols=48 Identities=10% Similarity=0.183 Sum_probs=25.6
Q ss_pred ehhHHHHHHHHHHHHHHhhhccChhHHHHhCceeccCc---chhhhHhHHHHH
Q 032764 45 YGFVGSITTVVATGIFLVWAYVPERCLNAIGIYYYPSR---YWALAVPAYAMV 94 (134)
Q Consensus 45 YGFv~~i~s~~~~~lyllWa~lP~~~L~~lgity~P~k---yWAlaiP~~ll~ 94 (134)
|--++.+...++- .++|.+.|+.....+|+++.+.. .+++..++...+
T Consensus 135 YiiAQ~lGA~~GA--~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf 185 (340)
T 3iyz_A 135 YITAQCLGAIIGA--GILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITF 185 (340)
T ss_pred HHHHHHHHHHHHH--HHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHH
Confidence 4444444444433 35667778776556777765432 345555554443
No 9
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=5.85 E-value=4.6e+02 Score=14.66 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032764 92 AMVTLVLALVFYIGLNF 108 (134)
Q Consensus 92 ll~~~l~~~~~Y~~~N~ 108 (134)
++.+..++...|+++|-
T Consensus 11 L~~al~~t~~lfiGL~K 27 (32)
T 1q90_L 11 LIGALVFTLGIYLGLLK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444566667777764
No 10
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=5.45 E-value=6e+02 Score=23.47 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=7.5
Q ss_pred ccCcchhhhHhHHHH
Q 032764 79 YPSRYWALAVPAYAM 93 (134)
Q Consensus 79 ~P~kyWAlaiP~~ll 93 (134)
+.+|++-+++=.-++
T Consensus 960 ~~N~~l~~~~~~~~~ 974 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVC 974 (1034)
T ss_pred cccHHHHHHHHHHHH
Confidence 456665554444333
Done!