BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032766
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 OS=Homo sapiens GN=OTUD3 PE=1 SV=1
Length = 398
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 2 VVQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSP 61
V Y++K RE FEPF+EDD+PF+++ S+ GT+AG+ + A + N+ IH+ +P
Sbjct: 99 TVDYMIKQREDFEPFVEDDIPFEKHVASLAKPGTFAGNDAIVAFARNHQLNVVIHQLNAP 158
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGSA 100
W IR + R +H++Y GEHY+ VR D+ A
Sbjct: 159 LWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSEAPA 197
>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3
Length = 1113
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHR--HMS 60
+ Y+ +NRE FE FIE F+EY + +E W G +E+ A SL+ + I+R ++S
Sbjct: 69 IHYLRENREKFEAFIEGS--FEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVS 126
Query: 61 PRWYIRNFDYHEARMIHLSYHDGEHYN---GVRLKEDSCI 97
P N ++ E + L + +G HY+ ++ KE S +
Sbjct: 127 PSQVTEN-NFPEK--VLLCFSNGNHYDIVYPIKYKESSAM 163
>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1
Length = 1107
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHR--HMS 60
++Y+ +NRE FE FIE F+EY + +E W G +E+ A SL+ + I++ ++S
Sbjct: 69 IRYLRENREKFEAFIEGS--FEEYLKRLENPQEWVGQVEISALSLMYRKDFVIYQEPNVS 126
Query: 61 PRWYIRNFDYHEARMIHLSYHDGEHYNGV 89
P N ++ E + L + +G HY+ V
Sbjct: 127 PSHVTEN-NFPEK--VLLCFSNGNHYDIV 152
>sp|Q9NP73|ALG13_HUMAN UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo
sapiens GN=ALG13 PE=1 SV=2
Length = 1137
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM-SP 61
V Y+ +N++TFE ++E F++Y + + AG +E++A SL+ + + ++R P
Sbjct: 266 VSYMRENQQTFESYVEGS--FEKYLERLGDPKESAGQLEIRALSLIYNRDFILYRFPGKP 323
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE 93
Y+ + Y + I L Y HY+ V K+
Sbjct: 324 PTYVTDNGYEDK--ILLCYSSSGHYDSVYSKQ 353
>sp|Q9D8C3|ALG13_MOUSE UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus
musculus GN=Alg13 PE=2 SV=2
Length = 1166
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM-SP 61
V Y+ +N++ FE ++E F++Y + + AG +EL+A SL+ + + I+R+ P
Sbjct: 260 VSYMKENQQAFESYVEGS--FEKYLERLGDPKESAGQLELKALSLIYNRDFIIYRYPGKP 317
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE-DSCIGSARPIIIKVFIITLF 113
+ + + + I L Y + HY+ V KE S G + I+ ++ +F
Sbjct: 318 PTQVTDNGFEDK--IILCYSNNGHYDSVYSKEFQSTAGICQAILYELLYKDVF 368
>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2
SV=1
Length = 288
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 9 NRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNF 68
N ET + F DD F YC ++ W G +EL+A S V + I + + SP I
Sbjct: 191 NPETSDSFGYDD--FMIYCDNIVRTTAWGGQLELRALSHVLKTPIEVIQADSPTLII-GE 247
Query: 69 DYHEARMIHL----SYHDGEHYNGVRLKEDSCIGSARPIII 105
+Y + +I + +Y GEHYN V E G P ++
Sbjct: 248 EYVKKPIILVYLRYAYSLGEHYNSVTPLEAGAAGGVLPRLL 288
>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1
Length = 443
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 8 KNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNIC--IHRHMSPRWYI 65
+NRE FE I F+ Y + +E W G ME+ A SL+ + + ++SP
Sbjct: 74 ENREKFEAIIGGS--FEGYLKRLENPQEWVGQMEISALSLMYRKDFITNLEPNVSPSQVT 131
Query: 66 RNFDYHEARMIHLSYHDGEHYN---GVRLKEDSCI 97
N ++ E + L + +G HY+ V+ KE S +
Sbjct: 132 EN-NFPEK--VLLCFSNGNHYDIVYPVKYKESSAM 163
>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2
SV=1
Length = 518
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH-MSP 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ P
Sbjct: 206 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEP 263
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 264 INTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIG 300
>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2
SV=1
Length = 518
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH-MSP 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ P
Sbjct: 206 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEP 263
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 264 INTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNKATIG 300
>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2
SV=2
Length = 566
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS-P 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ + P
Sbjct: 248 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP 305
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 306 INTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIG 342
>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2
Length = 566
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMS-P 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ + P
Sbjct: 248 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP 305
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 306 INTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIG 342
>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2
SV=1
Length = 513
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH-MSP 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++ P
Sbjct: 201 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYGTEP 258
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+E I +SYH HYN V + IG
Sbjct: 259 INTFHGIQKNEDEPIRVSYHRNIHYNSVVNPNKATIG 295
>sp|Q9CUB6|OTUD1_MOUSE OTU domain-containing protein 1 OS=Mus musculus GN=Otud1 PE=2 SV=2
Length = 454
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNI 53
V YI + + F P IE DV E+ + DG WAG+ EL A + + NI
Sbjct: 317 VHYIADHLDHFSPLIEGDV--GEFIIAAAQDGAWAGYPELLAMGQMLNVNI 365
>sp|Q5VV17|OTUD1_HUMAN OTU domain-containing protein 1 OS=Homo sapiens GN=OTUD1 PE=2 SV=1
Length = 481
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNI 53
V YI + + F P IE DV E+ + DG WAG+ EL A + + NI
Sbjct: 344 VHYIADHLDHFSPLIEGDV--GEFIIAAAQDGAWAGYPELLAMGQMLNVNI 392
>sp|Q8N6M0|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1
SV=1
Length = 293
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Query: 2 VVQYIVKNRETFEPFIEDD------VP--FDEYCQSMETDGTWAGHMELQAASLVTHSNI 53
+Y+ + E F PF+ + P F +YC+ + W G +EL+A S + + I
Sbjct: 183 TAEYMQSHVEDFLPFLTNPNTGDMYTPEEFQKYCEDIVNTAAWGGQLELRALSHILQTPI 242
Query: 54 CIHRHMSPRWYIRNFDYHEARMIHL----SYHDGEHYNGV 89
I + SP + +Y + +I + +Y GEHYN V
Sbjct: 243 EIIQADSPPIIV-GEEYSKKPLILVYMRHAYGLGEHYNSV 281
>sp|Q5ZIP6|OTU6B_CHICK OTU domain-containing protein 6B OS=Gallus gallus GN=OTUD6B PE=2
SV=1
Length = 302
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 23 FDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHL---- 78
F++YC + W G +EL+A S + + I + + SP + +Y +I +
Sbjct: 221 FEKYCDDIANTAAWGGQLELRALSHILQTPIEVVQMDSPSIIV-GEEYSGKPIILVYMRH 279
Query: 79 SYHDGEHYNGVRLKEDSC 96
+Y GEHYN V+L D+
Sbjct: 280 AYGLGEHYNSVKLLTDAT 297
>sp|Q7ZV00|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1
Length = 293
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 1 MVVQYIVKNRETFEPFIEDD--------VPFDEYCQSMETDGTWAGHMELQAASLVTHSN 52
QY+ + + F PF+ + F++YC + W G +EL+A S V
Sbjct: 182 QTAQYMRSHADDFMPFLTNPNTGDMYTAEEFEKYCSDVADTAAWGGQLELKALSQVLQLP 241
Query: 53 ICIHRHMSPRWYI-RNFDYHEARMIHL--SYHDGEHYNGV 89
I + + SP I +D + +I++ +Y GEHYN V
Sbjct: 242 IEVIQADSPCITIGEEYDKPKITLIYMRHAYGLGEHYNSV 281
>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1
Length = 571
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH---- 58
+ Y++KN + F ++ +D F Y + H+E+QA + + + + ++++
Sbjct: 248 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGT 305
Query: 59 --MSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+ P +E I +SYH HYN V + IG
Sbjct: 306 SAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNKATIG 347
>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2
SV=1
Length = 290
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 23 FDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI-RNFDYHEARMIHLSYH 81
F YC + + +W G +EL+A S V + I + + SP I + +++L Y
Sbjct: 204 FLRYCDDIVHNASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEYTRKPVTLVYLHYA 263
Query: 82 D--GEHYNGVR 90
GEHYN V+
Sbjct: 264 CDFGEHYNSVK 274
>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2
SV=1
Length = 560
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 3 VQYIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRH-MSP 61
+ Y++KN + F ++ +D F Y + H+E+QA + + + + +++ P
Sbjct: 246 MDYLMKNADYFSNYVTED--FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQSGTEP 303
Query: 62 RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIG 98
+ I +SYH HYN V + IG
Sbjct: 304 INTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNKATIG 340
>sp|Q5M8L0|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b
PE=2 SV=1
Length = 294
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
Query: 1 MVVQYIVKNRETFEPFIEDDVPFD--------EYCQSMETDGTWAGHMELQAASLVTHSN 52
Y+ + E F PF+ + D +YC + W G +EL+A S + +
Sbjct: 185 QTADYMQNHAEDFLPFLTNSSTGDMYTQEEFLKYCTDIVNTPAWGGQLELRALSHILKTA 244
Query: 53 I-CIHRHMSPRWYIRNFDYHEARMIHL--SYHDGEHYNGVRLKEDSCIGS 99
I I SP + ++++ +Y GEHYN V L + S S
Sbjct: 245 IEVIQAESSPIVIGEEYSSKAITLVYMRHAYGLGEHYNSVELLDTSTENS 294
>sp|Q8K2H2|OTU6B_MOUSE OTU domain-containing protein 6B OS=Mus musculus GN=Otud6b PE=2
SV=1
Length = 294
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 23 FDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI-RNFDYHEARMIHL--S 79
F +YC + W G +EL+A S + + I I + +P + + + ++++ +
Sbjct: 213 FGKYCDDIVNTAAWGGQLELRALSHILQTPIEILQADAPPIIVGEEYPRNPLVLVYMRHA 272
Query: 80 YHDGEHYNGV 89
Y GEHYN V
Sbjct: 273 YGLGEHYNSV 282
>sp|P38747|OTU2_YEAST OTU domain-containing protein 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=OTU2 PE=1 SV=1
Length = 307
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 5 YIVKNRETFEPFIEDDVPF-----DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM 59
Y+ ++R+ F P++ D+ DEY + ME W G +E+ A S V I I
Sbjct: 212 YVQEHRDDFIPYLFDEETMKMKDIDEYTKEMEHTAQWGGEIEILALSHVFDCPISILMSG 271
Query: 60 SP-RWYIRNFDYHEARMIHL--SYHDGEHYNGV 89
P + Y E ++++ SY GEHYN +
Sbjct: 272 RPIQVYNECGKNPELKLVYYKHSYALGEHYNSL 304
>sp|Q9UUK3|OTU2_SCHPO Ubiquitin thioesterase otu2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=otu2 PE=4 SV=1
Length = 324
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 5 YIVKNRETFEPFIEDD-----VPFDEYCQSMETDGTWAGHMELQA 44
Y++K+ E FE F+ D+ +P +YC + + W +E+QA
Sbjct: 225 YVLKHCEQFEGFLLDEESGEVLPVSDYCNEIRNNSKWGSDIEIQA 269
>sp|P18590|MX3_RAT Interferon-induced GTP-binding protein Mx3 OS=Rattus norvegicus
GN=Mx3 PE=2 SV=1
Length = 659
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 84 EHYNGVRLKEDSCIGSARPIIIKVFIITLFS 114
+H N R + +CI S P+II+ FI+ +F+
Sbjct: 576 QHLNAYRQEAHNCISSHIPLIIQYFILKMFA 606
>sp|Q6GM06|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2
SV=1
Length = 294
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 5 YIVKNRETFEPFIEDDV--------PFDEYCQSMETDGTWAGHMELQAASLVTHSNI-CI 55
Y+ K E F PF+ + F +YC + W G +EL+A S + + I I
Sbjct: 189 YMQKRAEDFLPFLTNSSTGDMYTQEEFQKYCTDIVNTPAWGGQLELRALSHILKTPIEVI 248
Query: 56 HRHMSPRWYIRNFDYHEARMIHL--SYHDGEHYNGV 89
P + ++++ +Y GEHYN V
Sbjct: 249 QAESLPIVIGEEYSNKPITLVYMRHAYGLGEHYNSV 284
>sp|Q06923|REP_PHUV Replication-associated protein OS=Pepper huasteco yellow vein virus
GN=AC1 PE=3 SV=1
Length = 349
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 29 SMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMI--HLSYHDGEHY 86
S+ +G L A SL H+ IC H +SP+ Y N Y+ I H H E
Sbjct: 216 SLVVEGPSRTGKTLWARSLGPHNYICGHMDLSPKIYSNNAWYNVIDDIPPHYVKHFKEFM 275
Query: 87 NGVRLKEDSCIGSARPIIIKVFIITLF 113
R + +C +PI IK I T+F
Sbjct: 276 GAQRDWQSNC-KYGKPIQIKGGIPTIF 301
>sp|Q05B57|OTU1_BOVIN Ubiquitin thioesterase OTU1 OS=Bos taurus GN=YOD1 PE=2 SV=1
Length = 348
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 24 DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDG 83
+EYC ++ D TW G +E+ S IC+ + R D + + L Y DG
Sbjct: 207 EEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIY-DG 265
Query: 84 EHYNGVRL 91
HY+ + L
Sbjct: 266 IHYDPLHL 273
>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium
discoideum GN=DDB_G0284757 PE=4 SV=2
Length = 766
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 23 FDEYCQSMETDGTWAGHMELQAASLVTHSNICI 55
+D+YC M +G W H+ L AA+ S I I
Sbjct: 692 WDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISI 724
>sp|P03594|RDRP_BMV RNA-directed RNA polymerase 2a OS=Brome mosaic virus GN=ORF2a PE=1
SV=1
Length = 822
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 24 DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHM 59
D + +E W HM+LQ ++ +++C ++HM
Sbjct: 351 DVMTKCLEYHKKWGKHMDLQGVNVAAETDLCRYQHM 386
>sp|Q1KZ59|POLG_CILVC RNA replication protein OS=Citrus leprosis virus C (isolate Citrus
sinesis/Brazil/Cordeiropolis/2003) PE=4 SV=1
Length = 2512
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 23/59 (38%)
Query: 20 DVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHL 78
D DE+ S+E DG + L S + NIC+H +R IHL
Sbjct: 732 DAGEDEFLDSLERDGVYGNKFTLILISKTFNVNICVHLKGGRELITHFISNKGSRFIHL 790
>sp|F5HC14|UL119_HCMVM Viral Fc-gamma receptor-like protein UL119 OS=Human cytomegalovirus
(strain Merlin) GN=UL119/UL118 PE=3 SV=1
Length = 345
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 39 HMELQAASLVTHSNICIHRHMS----PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKED 94
H L +SL H N +H H P W I N Y+ R+ ++ Y VRL
Sbjct: 213 HCLLNGSSLY-HPNSTVHLHQGDQLIPPWNISNVTYNGQRLREFVFYLNGTYTVVRLHVQ 271
Query: 95 SCIGSARPIIIKVFIITLFSFRDRLFYY 122
I VFI + F DRL Y
Sbjct: 272 --IAGRSFTTTYVFIKSDPLFEDRLLAY 297
>sp|P16739|UL119_HCMVA Viral Fc-gamma receptor-like protein UL119 OS=Human cytomegalovirus
(strain AD169) GN=UL119/UL118 PE=2 SV=2
Length = 345
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 39 HMELQAASLVTHSNICIHRHMS----PRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKED 94
H L +SL H N +H H P W I N Y+ R+ ++ Y VRL
Sbjct: 213 HCLLNGSSLY-HPNSTVHLHQGNQLIPPWNISNVTYNGQRLREFVFYLNGTYTVVRLHVQ 271
Query: 95 SCIGSARPIIIKVFIITLFSFRDRLFYY 122
I VFI + F DRL Y
Sbjct: 272 --IAGRSFTTTYVFIKSDPLFEDRLLAY 297
>sp|Q5VVQ6|OTU1_HUMAN Ubiquitin thioesterase OTU1 OS=Homo sapiens GN=YOD1 PE=1 SV=1
Length = 348
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 25 EYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGE 84
EYC ++ D TW G +E+ S IC+ + R D + + L Y DG
Sbjct: 208 EYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDAGYTKRVLLIY-DGI 266
Query: 85 HYN 87
HY+
Sbjct: 267 HYD 269
>sp|Q567B1|OTU1_DANRE Ubiquitin thioesterase OTU1 OS=Danio rerio GN=yod1 PE=2 SV=1
Length = 301
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 24 DEYCQSMETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDG 83
+EYC + D TW G +E+ S IC+ + R D + + L Y DG
Sbjct: 160 EEYCTWIRRDDTWGGAIEVSILSKFYQCEICVVDTQTVRVDRFGEDAGYTKRVLLIY-DG 218
Query: 84 EHYN 87
HY+
Sbjct: 219 IHYD 222
>sp|Q9XVR6|OTUBL_CAEEL Ubiquitin thioesterase otubain-like OS=Caenorhabditis elegans
GN=otub-1 PE=1 SV=1
Length = 284
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 5 YIVKNRETFEPFIEDDVPFDEYCQSMETDGTWAGHMELQAASLVTHSNICIH-----RHM 59
++ +N E + PFI++ + +YC+ E + W L SL+ + + R
Sbjct: 180 FLKQNSEEYAPFIDEGMTVAQYCE-QEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTA 238
Query: 60 SPR--WY--IRNFDYHEARMIHLSYHDGEHYNGVRLKEDSCIGS 99
+P W+ I + D A I L Y G HY+ V K+DS S
Sbjct: 239 APNGGWHYDIPSDDQQIAPEITLLYRPG-HYD-VIYKKDSTEAS 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.142 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,463,085
Number of Sequences: 539616
Number of extensions: 1958159
Number of successful extensions: 4175
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4149
Number of HSP's gapped (non-prelim): 44
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)