BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032767
         (134 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PSN|A Chain A, Crystal Structure Of Enolase1
 pdb|2PSN|B Chain B, Crystal Structure Of Enolase1
 pdb|2PSN|C Chain C, Crystal Structure Of Enolase1
 pdb|2PSN|D Chain D, Crystal Structure Of Enolase1
          Length = 434

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 21  IKNIHKSKHGSDSGVYDSEGRFVPSKFE 48
           +KN+ K K+G D+     EG F P+  E
Sbjct: 192 LKNVIKEKYGKDATNVGDEGGFAPNILE 219


>pdb|3B97|A Chain A, Crystal Structure Of Human Enolase 1
 pdb|3B97|B Chain B, Crystal Structure Of Human Enolase 1
 pdb|3B97|C Chain C, Crystal Structure Of Human Enolase 1
 pdb|3B97|D Chain D, Crystal Structure Of Human Enolase 1
          Length = 433

 Score = 25.4 bits (54), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 21  IKNIHKSKHGSDSGVYDSEGRFVPSKFE 48
           +KN+ K K+G D+     EG F P+  E
Sbjct: 191 LKNVIKEKYGKDATNVGDEGGFAPNILE 218


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,924,841
Number of Sequences: 62578
Number of extensions: 154948
Number of successful extensions: 351
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 71
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)