BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032770
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LC83|RS242_ARATH 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2
SV=2
Length = 133
Score = 231 bits (590), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 113/133 (84%), Positives = 124/133 (93%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
MA+KA+TIRTR FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
KFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KKIR
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 121 GVKKAKAEAGKKK 133
GVKK KA KKK
Sbjct: 121 GVKKTKAGDTKKK 133
>sp|Q9SS17|RS241_ARATH 40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2
SV=1
Length = 133
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/133 (88%), Positives = 126/133 (94%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
MA+KA+TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVF
Sbjct: 1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
KFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KKIR
Sbjct: 61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 121 GVKKAKAEAGKKK 133
GVKK KA KKK
Sbjct: 121 GVKKTKAGDAKKK 133
>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2
SV=1
Length = 132
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/133 (63%), Positives = 103/133 (77%), Gaps = 1/133 (0%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
M + TIRTRKFMTNRLL+RKQ V DVLHPG+ VSK E++EKLA+MY V + +FVF
Sbjct: 1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 59
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 120
F+T+FGGGKSTGF LIYD+++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 60 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 119
Query: 121 GVKKAKAEAGKKK 133
G KK+K A KK
Sbjct: 120 GTKKSKVGAAAKK 132
>sp|O42387|RS24_TAKRU 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1
Length = 132
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/131 (62%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY + +FVF F
Sbjct: 2 NDTVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RT FGGGK+TGF ++YDS++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKK 133
KKA A KKK
Sbjct: 121 KKASVGASKKK 131
>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1
Length = 131
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 81/131 (61%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ ++T+RTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY + +FVF F
Sbjct: 2 NDSVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
+T FGGGK+TGF ++YDS++ AKK EPKYRL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 KTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKK 133
KKA A KK
Sbjct: 121 KKASVGAAGKK 131
>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps24b PE=2 SV=3
Length = 134
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/123 (62%), Positives = 96/123 (78%), Gaps = 2/123 (1%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK E++EKLA+MY D+ + F
Sbjct: 2 SEAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGL 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKIRG 121
RTHFGGG+STGF LIYDS ES KKFEP YRL+R G A ++K +R+Q K+RKNR KK+ G
Sbjct: 61 RTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120
Query: 122 VKK 124
K
Sbjct: 121 TGK 123
>sp|P0CX32|RS24B_YEAST 40S ribosomal protein S24-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS24B PE=1 SV=1
Length = 135
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%), Gaps = 3/125 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y + +A+ VF
Sbjct: 1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKI 119
FRT FGGGKS GFGL+Y+SV AKKFEP YRL+R GLA KVEK SR+Q K++KNR KKI
Sbjct: 59 GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118
Query: 120 RGVKK 124
G K
Sbjct: 119 FGTGK 123
>sp|P0CX31|RS24A_YEAST 40S ribosomal protein S24-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS24A PE=1 SV=1
Length = 135
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/125 (66%), Positives = 100/125 (80%), Gaps = 3/125 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
M+D A+TIRTRK ++N LL+RKQFV+DVLHP RANVSK EL+EKLA +Y + +A+ VF
Sbjct: 1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVF 58
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKI 119
FRT FGGGKS GFGL+Y+SV AKKFEP YRL+R GLA KVEK SR+Q K++KNR KKI
Sbjct: 59 GFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKI 118
Query: 120 RGVKK 124
G K
Sbjct: 119 FGTGK 123
>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1
Length = 132
Score = 159 bits (401), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 98/131 (74%), Gaps = 1/131 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ V+DVLHPG+A V K E++EKLA+MY + +FVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKT-TPDVVFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RT FGGGK+TGF ++YDS++ AKK EPK+RL +GL K + SRKQ ER+NR KK+R +
Sbjct: 61 RTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSI 120
Query: 123 KKAKAEAGKKK 133
KKA A KK
Sbjct: 121 KKASVGAAGKK 131
>sp|Q75K27|RS24_DICDI 40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3
SV=1
Length = 126
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/115 (64%), Positives = 93/115 (80%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
M A+ +RTRK +TNRLLSRKQFV++V+HPG+ANVSK +LK +A+++ V D IF+F
Sbjct: 1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLF 60
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNR 115
F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R GL TK + SRKQ KE+KNR
Sbjct: 61 GFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNR 115
>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps24a PE=3 SV=3
Length = 134
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 97/122 (79%), Gaps = 2/122 (1%)
Query: 4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFR 63
+A+TIRTRKFMTNRLL RKQ V+D+LHPG+AN+SK +L+EKL +MY DA+A+ F R
Sbjct: 3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLR 61
Query: 64 THFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKIRGV 122
TH+GGG++TGF LIYD VE+ KKFEP YRL+R G A ++K +R+Q K+RKNR KK+ G
Sbjct: 62 THYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121
Query: 123 KK 124
K
Sbjct: 122 GK 123
>sp|P14249|RS24_MUCCL 40S ribosomal protein S24 OS=Mucor circinelloides f. lusitanicus
GN=RPS24 PE=3 SV=1
Length = 148
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 99/125 (79%), Gaps = 1/125 (0%)
Query: 2 ADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61
AD A+TIRTRKF+TNRLL RKQ V+DV+HPG ANVSK EL+ K+ +MY D + VF
Sbjct: 20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFG 78
Query: 62 FRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRG 121
F+THFGGGK+TGF LIYD+VE+ K FEPK+RL+R GLA + RKQ KE+KNR+KK RG
Sbjct: 79 FKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRG 138
Query: 122 VKKAK 126
V+K+K
Sbjct: 139 VRKSK 143
>sp|Q5RAQ8|RS24_PONAB 40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1
Length = 131
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/131 (67%), Positives = 103/131 (78%), Gaps = 1/131 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKK 133
KA AGKKK
Sbjct: 121 AKANVGAGKKK 131
>sp|Q56JU9|RS24_BOVIN 40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2
Length = 131
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/131 (67%), Positives = 103/131 (78%), Gaps = 1/131 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKK 133
KA AGKKK
Sbjct: 121 AKANVGAGKKK 131
>sp|P62850|RS24_RAT 40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1
Length = 133
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/132 (66%), Positives = 103/132 (78%), Gaps = 1/132 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKKK 134
KA AGKK K
Sbjct: 121 AKANVGAGKKPK 132
>sp|P62849|RS24_MOUSE 40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1
Length = 133
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/132 (66%), Positives = 103/132 (78%), Gaps = 1/132 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKKK 134
KA AGKK K
Sbjct: 121 AKANVGAGKKPK 132
>sp|P62848|RS24_MESAU 40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3
SV=1
Length = 133
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/132 (66%), Positives = 103/132 (78%), Gaps = 1/132 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKKK 134
KA AGKK K
Sbjct: 121 AKANVGAGKKPK 132
>sp|P62847|RS24_HUMAN 40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1
Length = 133
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 88/132 (66%), Positives = 103/132 (78%), Gaps = 1/132 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKKK 134
KA AGKK K
Sbjct: 121 AKANVGAGKKPK 132
>sp|P02377|RS24_XENLA 40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1
Length = 132
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/131 (66%), Positives = 103/131 (78%), Gaps = 1/131 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY + IFVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RTHFGGGK+TGFG+IYDS++ AKK EPK+RL ++GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKK 133
KA AGKKK
Sbjct: 121 AKANVGAGKKK 131
>sp|Q4R5H5|RS24_MACFA 40S ribosomal protein S24 OS=Macaca fascicularis GN=RPS24 PE=2 SV=1
Length = 131
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/131 (66%), Positives = 102/131 (77%), Gaps = 1/131 (0%)
Query: 3 DKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62
+ +TIRTRKFMTNRLL RKQ VI VLHPG+A V K E++EKLA+MY + IFVF F
Sbjct: 2 NDTVTIRTRKFMTNRLLQRKQMVIGVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGF 60
Query: 63 RTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGV 122
RTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL K + SRKQ KERKNR KK+RG
Sbjct: 61 RTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGT 120
Query: 123 KKAKAEAGKKK 133
KA AGKKK
Sbjct: 121 AKANVGAGKKK 131
>sp|Q8U442|RS24_PYRFU 30S ribosomal protein S24e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rps24e PE=1 SV=1
Length = 99
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ IR ++ N+L+ RK+ ++ HPG S+ ++K KL M D+ + + R++
Sbjct: 1 MEIRIKEIKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY-IRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVE 103
FG S G+ YDS E EP+Y LIR+GL K E
Sbjct: 60 FGSYISKGYAKAYDSKERMLYIEPEYILIRDGLIEKKE 97
>sp|Q5JIY8|RS24_PYRKO 30S ribosomal protein S24e OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rps24e PE=3 SV=1
Length = 98
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 8 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
I+ + N+LL RK+ DVLH G S+ +K KL M D+ D N + R++FG
Sbjct: 3 IKVTEIRENKLLGRKEIYFDVLHEGEPTPSREAVKGKLVAMLDL-DPNTTVIQYIRSYFG 61
Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK 104
S G+ Y++ E EP+Y L+R+GL K E+
Sbjct: 62 SNVSKGYAKAYETRERMLYIEPEYILVRDGLVQKQEE 98
>sp|C5A442|RS24_THEGJ 30S ribosomal protein S24e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rps24e PE=3 SV=1
Length = 98
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ I+ + N+LL RK+ D++H G S+ +K KLA M D+ D N + + R++
Sbjct: 1 MEIKVTEIRENKLLGRKEIYFDIIHEGEPTPSREAVKGKLAAMLDL-DPNTMVLQYIRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK 104
FG S G+ Y++ E EP+Y L+R+GL K E+
Sbjct: 60 FGSHVSKGYAKAYETRERMLYIEPEYILLRDGLIQKEEE 98
>sp|B6YW35|RS24_THEON 30S ribosomal protein S24e OS=Thermococcus onnurineus (strain NA1)
GN=rps24e PE=3 SV=1
Length = 98
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 8 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
I+ + N+LL RK+ DV+H G S+ ++K KL M D+ + + +++FG
Sbjct: 3 IKVTEIKENKLLGRKEIYFDVIHEGEPTPSRKDVKGKLVAMLDLDPETTVLQY-IKSYFG 61
Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK 104
S G+ Y+S E EP+Y L+R+G+ TK E+
Sbjct: 62 SRVSKGYAKAYESKERMLYIEPEYILVRDGIITKEEE 98
>sp|P58746|RS24_PYRHO 30S ribosomal protein S24e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps24e PE=3 SV=1
Length = 99
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 8 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
I+ + N+L+ RK+ ++ HPG S+ ++K KL M D+ + + R++FG
Sbjct: 3 IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY-IRSYFG 61
Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVE 103
KS G+ Y E EP+Y LIR+G+ K E
Sbjct: 62 SYKSKGYAKYYYDKERMLYIEPEYILIRDGIIEKKE 97
>sp|Q9UY20|RS24_PYRAB 30S ribosomal protein S24e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps24e PE=1 SV=1
Length = 99
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 8 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG 67
I+ + N+L+ RK+ ++ HPG S+ ++K KL M D+ + + R++FG
Sbjct: 3 IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY-IRSYFG 61
Query: 68 GGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVE 103
KS G+ Y + EP+Y LIR+G+ K E
Sbjct: 62 SYKSKGYAKYYYDKDRMLYIEPEYILIRDGIIEKKE 97
>sp|C6A0F5|RS24_THESM 30S ribosomal protein S24e OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rps24e PE=3 SV=1
Length = 98
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 6 ITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTH 65
+ IR N+LL RK+ +V+H G S+A++K KL M D+ + A V R++
Sbjct: 1 MEIRVIDTKENKLLGRKEIYFEVIHEGEPTPSRADVKGKLVAMLDL-NPEATVVQYIRSY 59
Query: 66 FGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEK 104
FG S G+ Y+S E EP+Y L R G+ + E+
Sbjct: 60 FGSHVSEGYAKAYESKERMLYIEPEYVLRREGIIQEQEE 98
>sp|Q74M50|RS24_NANEQ 30S ribosomal protein S24e OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rps24e PE=3 SV=1
Length = 94
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N+L R +++I V HP ++ E KEK+A M +V D N + + K + +G S +
Sbjct: 12 NKLFDRTEYIIQVEHPKEKTPTREEAKEKIAEMLNV-DKNKLVIKKIVSKYGLPYSFIYA 70
Query: 76 LIYDSVESAKKFEPKYRLIRNGL 98
+YD++++AK+ E K L RN L
Sbjct: 71 RVYDNIDTAKRVELKQILRRNNL 93
>sp|A4WKS9|RS24_PYRAR 30S ribosomal protein S24e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rps24e PE=3 SV=1
Length = 121
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N+LL+R++ +++V H ++ +L+E +A+ V D +++F+ K +T +G GKS
Sbjct: 14 NKLLARREVLVEVSHHKAPTPTRKDLREWVAKQLGV-DVSSVFIRKIKTEYGIGKSVAEV 72
Query: 76 LIYDSVESAKKFEPKYRLIRN 96
+Y + A+ EP Y L RN
Sbjct: 73 HVYSDSKMARIIEPLYILARN 93
>sp|O26367|RS24_METTH 30S ribosomal protein S24e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rps24e PE=3 SV=1
Length = 100
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N LL+RK+ + L+ G + E+K KL M D D + + V K FG ++TG+
Sbjct: 11 NPLLNRKEIRFECLYEGESTPKVLEVKNKLVAMLDA-DKDLLVVDKIDQGFGEPRATGYA 69
Query: 76 LIYDSVESAKKFEPKYRLIRNGLAT 100
IY+S E + EP++ + +N A+
Sbjct: 70 KIYESAEKLTEIEPEHVIKKNTEAS 94
>sp|Q8ZV65|RS24_PYRAE 30S ribosomal protein S24e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rps24e PE=3 SV=1
Length = 121
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N+LL+R++ +++ +H + ++ ++E +A+ + D + +FV + +T FG G+S
Sbjct: 14 NKLLARRELLVEAVHQNASTPTRQSVREWVAKQLGI-DISNVFVRRIKTEFGRGRSLAEV 72
Query: 76 LIYDSVESAKKFEPKYRLIRN 96
+Y+ + A+ EP Y L RN
Sbjct: 73 HVYNDSKIARVIEPLYILARN 93
>sp|Q9YCY0|RS24_AERPE 30S ribosomal protein S24e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps24e
PE=3 SV=3
Length = 118
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N L+ R++ V+ + H + + L++KLA + V D I++ +T +G G S
Sbjct: 28 NPLVKRREIVMILHHELKPTPMRIMLRQKLAEVLGV-DIKRIYIRYIKTGYGAGLSKVRV 86
Query: 76 LIYDSVESAKKFEPKYRLIRNGLATKVEKS 105
+YDS E A FEPKY + RNG E++
Sbjct: 87 HVYDSPERALSFEPKYIIERNGGVNPFEEA 116
>sp|Q18KI1|RS24_HALWD 30S ribosomal protein S24e OS=Haloquadratum walsbyi (strain DSM
16790) GN=rps24e PE=3 SV=1
Length = 105
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L R ++ H A S+ +++ LA + +D++ + V K T FG K+ G+
Sbjct: 11 NSMLHRTDIQFEIAHED-ATPSRLSVRDSLAAKIN-KDSDEVVVHKLDTKFGMRKTIGYA 68
Query: 76 LIYDSVESAKKFEPKYRLIRNGLATKVE 103
+YDS +SA++ E Y L RN + + E
Sbjct: 69 KVYDSPQSARQVEQDYMLKRNKIEIESE 96
>sp|Q8TVD8|RS24_METKA 30S ribosomal protein S24e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rps24e PE=3
SV=1
Length = 116
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N LL RK+ V H K+E+ KLA + DV D + + + + FG ++ G+
Sbjct: 11 NPLLYRKEVKFVVRHEDSGTPQKSEVLRKLAAILDV-DKEVVLIDRMESEFGKRETKGYA 69
Query: 76 LIYDSVESAKKFEPKYRLIRN 96
IY S+E + EP++ + R+
Sbjct: 70 KIYKSMEHLEDIEPEHMVERH 90
>sp|Q6L0P8|RS24_PICTO 30S ribosomal protein S24e OS=Picrophilus torridus (strain ATCC
700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rps24e
PE=3 SV=1
Length = 102
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N+LL RK+ + S+ ++++ LA Y D + I V K R G + G+
Sbjct: 14 NKLLFRKEINYTIKFENDKTPSREDIRKLLANNYG-SDESLIIVDKNRQETGKHEIKGYA 72
Query: 76 LIYDSVESAKKFEPKYRLIRNGLATK 101
IYD+ E A +EP Y L RN L K
Sbjct: 73 KIYDTKEHAMLYEPDYELFRNKLKVK 98
>sp|Q975Q9|RS24_SULTO 30S ribosomal protein S24e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rps24e PE=3 SV=1
Length = 120
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N ++ R++ I V H G +S+ ++ + +A Y ++ + + + K T +G G S
Sbjct: 25 NNVIGRRELYIKVFHIGSGTISRKDMIKAIASSYGAQE-DLVVIKKIHTLYGAGISYVRA 83
Query: 76 LIYDSVESAKKFEPKYRLIRN 96
IY+ ++ ++FEP+Y + R+
Sbjct: 84 NIYNDKKTLQEFEPQYLIGRD 104
>sp|C4KIA8|RS24_SULIK 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rps24e PE=3 SV=1
Length = 120
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ ++ V H G S+ ++ + +++ + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREILLKVYHMGSGTPSRKDIIKAISQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNG 97
K T +G G S IY S E +K EPKY L R+
Sbjct: 67 KISTSYGAGISNVKLHIYKSREILEKIEPKYLLDRDA 103
>sp|P19953|RS24_HALMA 30S ribosomal protein S24e OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps24e
PE=1 SV=1
Length = 102
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L R +V+H A S+ +++ LA + +DA + + K T FG K+ G+
Sbjct: 11 NPMLHRTDVRFEVVH-DEATPSRLSVRDSLAATLN-KDAEEVVIHKLDTKFGMRKTVGYA 68
Query: 76 LIYDSVESAKKFEPKYRLIRN 96
+YD+ E A+ E + L RN
Sbjct: 69 KVYDNPEYARDVEQDHMLERN 89
>sp|B9LSM1|RS24_HALLT 30S ribosomal protein S24e OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps24e PE=3
SV=1
Length = 102
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L R + H A S+ +++ LA D + + + V + T FG K+ G+
Sbjct: 11 NPMLHRTDIRFETTHE-EATPSRLSVRDSLAAKLD-KASEEVVVHELDTKFGMRKTIGYA 68
Query: 76 LIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQ 108
+YD+ E A E +Y L RN + +VE ++
Sbjct: 69 KVYDTAEDALDVEQEYMLERNKIGGEVEADAEE 101
>sp|Q97ZY6|RS24_SULSO 30S ribosomal protein S24e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rps24e PE=3 SV=1
Length = 120
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R M N ++ R++ + V H G S+ ++ + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-MQNSVIGRREISLKVYHMGSGTPSRKDIIKAIIQALGSQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNG 97
K T +G G S IY S E +K EPKY L R+
Sbjct: 67 KISTSYGAGISNVKLHIYKSREILEKVEPKYLLDRDA 103
>sp|C3MWX0|RS24_SULIM 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNG 97
K T +G G S IY S E +K EPKY L R+
Sbjct: 67 KISTSYGAGISNVKLHIYKSREILEKIEPKYLLDRDA 103
>sp|C3N6N7|RS24_SULIA 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
M.16.27) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNG 97
K T +G G S IY S E +K EPKY L R+
Sbjct: 67 KISTSYGAGISNVKLHIYKSREILEKIEPKYLLDRDA 103
>sp|C3N750|RS24_SULIY 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNG 97
K T +G G S IY S E +K EPKY L R+
Sbjct: 67 KISTSYGAGISNIKLHIYKSREILEKIEPKYLLDRDA 103
>sp|C3NGI5|RS24_SULIN 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNG 97
K T +G G S IY S E +K EPKY L R+
Sbjct: 67 KISTSYGAGISNIKLHIYKSREILEKIEPKYLLDRDA 103
>sp|C3MQY2|RS24_SULIL 30S ribosomal protein S24e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rps24e PE=3 SV=1
Length = 120
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA I R + N ++ R++ + V H G S+ ++ + + + + ++ N + V
Sbjct: 9 ISDKAEGIIERD-VQNAVIGRREISLKVYHMGSGTPSRKDIIKAIIQAFASQE-NLVVVR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNG 97
K T +G G S IY S E +K EPKY L R+
Sbjct: 67 KISTSYGAGISNIKLHIYKSREILEKIEPKYLLDRDA 103
>sp|Q4JAF9|RS24_SULAC 30S ribosomal protein S24e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rps24e PE=3 SV=1
Length = 118
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DK I R + N + +R++ I + H G S+ EL + +A + + + + V
Sbjct: 9 VSDKVEGIVERD-IQNNVANRRELYIKLFHIGSGTPSRKELVKAIASTFSTAE-DLVVVK 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRN 96
K T++G G S +Y +S +K EP+Y + R+
Sbjct: 67 KVFTNYGSGISYARVNVYKDKDSLQKLEPQYLIGRD 102
>sp|Q9HJ79|RS24_THEAC 30S ribosomal protein S24e OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps2e PE=1 SV=1
Length = 98
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L RK+ + S+ E+KE +A+ V D + V + G + G+
Sbjct: 11 NPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYT 69
Query: 76 LIYDSVESAKKFEPKYRLIRNGLATK 101
IY SA +EP Y LIRNGL K
Sbjct: 70 KIYADKPSAMLYEPDYELIRNGLKQK 95
>sp|Q3IMN0|RS24_NATPD 30S ribosomal protein S24e OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rps24e PE=3 SV=1
Length = 105
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L R + H A S+ +++ LA + +DA+ + V K T +G K+ G
Sbjct: 11 NPMLHRTDVRFQLTHE-EATPSRLSVRDSLAAKLN-KDASEVVVRKLDTKYGMRKTVGHA 68
Query: 76 LIYDSVESAKKFEPKYRLIRN 96
+YDS + AK E + L RN
Sbjct: 69 KVYDSADDAKAVEQDHALERN 89
>sp|A4YIV8|RS24_METS5 30S ribosomal protein S24e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rps24e PE=3 SV=1
Length = 113
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60
++DKA + N+++ RK+ I V H G S+A++++ ++ ++ + + +
Sbjct: 9 VSDKAEAL-VENLKENKVIGRKEIKIKVYHIGSPTPSRADIRKAISSFIGAKE-DLVVIR 66
Query: 61 KFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIR 95
K T +G G S +Y + KFEP + + R
Sbjct: 67 KINTGYGAGISEATIHVYSEKDVLSKFEPAHLVNR 101
>sp|Q97BH3|RS24_THEVO 30S ribosomal protein S24e OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps2e PE=3 SV=1
Length = 99
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 16 NRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFG 75
N +L RK+ + S+ E+KE +A+ ++ I V + G + G+
Sbjct: 12 NPILKRKELKYTLKFENARTPSREEIKEIIAK-HEGAQKELIIVESNKQLTGKHEIVGYT 70
Query: 76 LIYDSVESAKKFEPKYRLIRNGLATK 101
IY SA +EP Y LIRNGL K
Sbjct: 71 KIYQDKASAMLYEPDYELIRNGLKQK 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,992,670
Number of Sequences: 539616
Number of extensions: 1652815
Number of successful extensions: 8869
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 8432
Number of HSP's gapped (non-prelim): 384
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)