Query 032770
Match_columns 134
No_of_seqs 103 out of 322
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_Y RP50, 40S ribosomal pro 100.0 8.4E-60 2.9E-64 354.0 11.8 130 1-132 1-131 (135)
2 2xzm_P RPS24E; ribosome, trans 100.0 6.5E-58 2.2E-62 348.3 13.4 129 5-134 2-130 (149)
3 3iz6_U 40S ribosomal protein S 100.0 4.3E-60 1.5E-64 356.6 -0.1 131 4-134 8-138 (138)
4 2v94_A RPS24, 30S ribosomal pr 100.0 4.7E-45 1.6E-49 264.8 11.7 97 5-102 8-104 (107)
5 2g1d_A 30S ribosomal protein S 100.0 8.2E-45 2.8E-49 260.0 9.8 95 7-102 2-96 (98)
6 1xn9_A 30S ribosomal protein S 100.0 1.2E-43 4.1E-48 255.1 11.8 93 7-101 2-94 (101)
7 1ywx_A 30S ribosomal protein S 100.0 2.8E-43 9.4E-48 253.7 12.3 93 7-101 2-94 (102)
8 2dgw_A Probable RNA-binding pr 79.4 9.2 0.00031 23.9 6.9 45 34-86 20-65 (91)
9 2cpf_A RNA binding motif prote 70.6 17 0.00059 22.9 7.3 50 34-86 15-65 (98)
10 3p5t_L Cleavage and polyadenyl 69.8 12 0.00041 23.5 5.5 47 34-86 11-60 (90)
11 3ue2_A Poly(U)-binding-splicin 66.4 10 0.00035 26.1 4.9 47 38-86 39-86 (118)
12 2dhg_A TRNA selenocysteine ass 65.6 23 0.00079 22.5 8.5 47 34-86 19-66 (104)
13 2dng_A Eukaryotic translation 64.9 12 0.0004 24.1 4.7 53 27-87 19-72 (103)
14 2dnh_A Bruno-like 5, RNA bindi 64.7 19 0.00066 22.9 5.8 46 34-86 25-71 (105)
15 3dxb_A Thioredoxin N-terminall 63.7 8.4 0.00029 28.4 4.2 31 56-86 159-190 (222)
16 2cpz_A CUG triplet repeat RNA- 63.5 27 0.00092 22.7 6.4 47 34-86 35-82 (115)
17 2d9p_A Polyadenylate-binding p 63.2 13 0.00045 23.7 4.7 45 34-86 25-70 (103)
18 2dh8_A DAZ-associated protein 60.9 27 0.00093 22.3 6.0 47 34-86 26-73 (105)
19 2dha_A FLJ20171 protein; RRM d 60.8 16 0.00056 25.2 5.1 54 25-85 25-82 (123)
20 3nmr_A Cugbp ELAV-like family 60.0 32 0.0011 23.2 6.5 49 34-86 13-62 (175)
21 1p27_B RNA-binding protein 8A; 59.0 32 0.0011 21.9 8.5 47 34-86 33-80 (106)
22 2lxi_A RNA-binding protein 10; 57.7 20 0.0007 22.8 4.9 47 34-86 11-59 (91)
23 1p1t_A Cleavage stimulation fa 57.5 33 0.0011 21.6 6.6 47 34-86 18-65 (104)
24 2cpx_A Hypothetical protein FL 55.7 17 0.0006 23.6 4.4 47 34-86 35-82 (115)
25 4fxv_A ELAV-like protein 1; RN 55.4 39 0.0013 21.8 8.4 66 12-86 10-76 (99)
26 2mss_A Protein (musashi1); RNA 53.1 23 0.00079 21.1 4.3 48 34-87 9-57 (75)
27 2io0_B Small ubiquitin-related 53.0 46 0.0016 22.0 6.6 51 1-61 1-51 (91)
28 1jmt_A Splicing factor U2AF 35 52.9 14 0.00049 24.5 3.6 34 47-86 49-83 (104)
29 1oo0_B CG8781-PA, drosophila Y 52.8 43 0.0015 21.5 6.3 53 27-86 30-83 (110)
30 1s79_A Lupus LA protein; RRM, 52.4 26 0.00091 23.0 4.9 46 34-86 21-67 (103)
31 2fy1_A RNA-binding motif prote 52.2 32 0.0011 22.8 5.3 46 34-86 17-63 (116)
32 1uaw_A Mouse-musashi-1; RNP-ty 51.5 18 0.00061 21.6 3.6 46 34-85 10-56 (77)
33 1x5s_A Cold-inducible RNA-bind 51.5 30 0.001 21.9 4.9 47 34-86 22-69 (102)
34 2dgv_A HnRNP M, heterogeneous 51.1 40 0.0014 20.7 6.2 45 34-86 18-63 (92)
35 2x1f_A MRNA 3'-END-processing 51.1 43 0.0015 21.0 6.2 47 34-86 12-59 (96)
36 1fj7_A Nucleolin RBD1, protein 51.0 6.6 0.00023 25.2 1.6 53 26-86 20-73 (101)
37 1u6f_A Tcubp1, RNA-binding pro 50.3 54 0.0018 21.9 8.7 47 34-86 52-99 (139)
38 2cqp_A RNA-binding protein 12; 50.2 44 0.0015 20.9 7.1 54 26-86 18-72 (98)
39 2hvz_A Splicing factor, argini 50.0 45 0.0016 21.0 5.6 42 34-86 10-52 (101)
40 3s8s_A Histone-lysine N-methyl 49.9 53 0.0018 21.7 8.2 47 34-86 16-63 (110)
41 1wez_A HnRNP H', FTP-3, hetero 49.0 28 0.00096 22.7 4.5 50 27-85 19-69 (102)
42 1wel_A RNA-binding protein 12; 47.9 36 0.0012 22.6 5.0 57 25-88 27-85 (124)
43 2cqg_A TDP-43, TAR DNA-binding 47.6 51 0.0017 20.8 8.2 47 34-86 25-72 (103)
44 2cq0_A Eukaryotic translation 47.3 51 0.0018 20.8 6.4 47 34-86 25-72 (103)
45 2dis_A Unnamed protein product 46.9 53 0.0018 20.9 5.9 48 34-86 18-67 (109)
46 2pq0_A Hypothetical conserved 46.7 23 0.00079 25.9 4.2 33 25-61 174-206 (258)
47 1nu4_A U1A RNA binding domain; 46.5 15 0.00051 23.1 2.7 48 34-86 18-66 (97)
48 2dgp_A Bruno-like 4, RNA bindi 46.3 32 0.0011 21.9 4.4 52 28-86 18-70 (106)
49 2cqh_A IGF-II mRNA-binding pro 46.3 50 0.0017 20.4 5.5 41 34-86 18-59 (93)
50 2cqd_A RNA-binding region cont 45.7 59 0.002 21.0 6.0 47 34-86 27-74 (116)
51 1x4e_A RNA binding motif, sing 45.7 36 0.0012 20.7 4.4 48 34-87 15-63 (85)
52 2ek1_A RNA-binding protein 12; 45.6 51 0.0018 20.3 6.8 47 34-86 25-72 (95)
53 3pgw_A U1-A; protein-RNA compl 45.4 76 0.0026 23.6 7.0 48 34-86 19-67 (282)
54 1x4b_A Heterogeneous nuclear r 44.6 26 0.0009 22.8 3.8 47 34-86 37-84 (116)
55 1x5u_A Splicing factor 3B subu 44.2 58 0.002 20.5 5.4 47 34-86 25-72 (105)
56 3fzq_A Putative hydrolase; YP_ 43.9 34 0.0011 24.9 4.7 26 35-61 198-223 (274)
57 2a3j_A U1 small nuclear ribonu 43.9 24 0.00081 24.5 3.7 44 34-85 39-86 (127)
58 1x5o_A RNA binding motif, sing 43.6 63 0.0021 20.8 5.8 46 34-86 35-81 (114)
59 2db1_A Heterogeneous nuclear r 43.5 46 0.0016 22.1 5.0 55 25-86 19-76 (118)
60 2kt5_A RNA and export factor-b 43.3 55 0.0019 21.5 5.4 53 26-86 38-91 (124)
61 2dgs_A DAZ-associated protein 43.3 59 0.002 20.3 5.5 47 34-86 20-67 (99)
62 2dnz_A Probable RNA-binding pr 43.1 57 0.0019 20.1 6.3 47 34-86 15-62 (95)
63 2la6_A RNA-binding protein FUS 43.1 60 0.002 20.4 6.2 47 34-86 23-78 (99)
64 2ki2_A SS-DNA binding protein 43.1 14 0.00046 23.0 2.1 49 34-88 11-60 (90)
65 1l3k_A Heterogeneous nuclear r 42.8 80 0.0027 21.7 8.2 47 34-86 114-161 (196)
66 2kxn_B Transformer-2 protein h 42.5 47 0.0016 22.6 5.0 47 34-86 56-103 (129)
67 2cqi_A Nucleolysin TIAR; RNA r 42.4 59 0.002 20.5 5.3 45 34-86 25-70 (103)
68 2cqc_A Arginine/serine-rich sp 42.2 58 0.002 20.0 8.0 47 34-86 25-72 (95)
69 2ku7_A MLL1 PHD3-CYP33 RRM chi 42.2 72 0.0025 21.0 6.2 47 34-86 73-120 (140)
70 3ex7_B RNA-binding protein 8A; 42.2 62 0.0021 21.2 5.5 47 34-86 32-79 (126)
71 1iqt_A AUF1, heterogeneous nuc 41.8 10 0.00034 22.7 1.2 47 34-86 9-56 (75)
72 3n9u_C Cleavage and polyadenyl 41.7 89 0.0031 22.0 8.8 49 34-86 65-114 (156)
73 2cq3_A RNA-binding protein 9; 41.7 64 0.0022 20.3 5.6 45 34-86 25-70 (103)
74 2rs2_A Musashi-1, RNA-binding 41.6 46 0.0016 21.7 4.7 47 34-86 35-82 (109)
75 1whw_A Hypothetical protein ri 41.5 63 0.0021 20.1 6.0 47 34-86 18-65 (99)
76 3bs9_A Nucleolysin TIA-1 isofo 41.4 57 0.002 19.7 8.6 47 34-86 16-63 (87)
77 2xs2_A Deleted in azoospermia- 41.2 65 0.0022 20.2 6.7 45 34-85 19-64 (102)
78 2d9o_A DNAJ (HSP40) homolog, s 40.1 21 0.00072 23.8 2.8 41 34-85 27-68 (100)
79 1h2v_Z 20 kDa nuclear CAP bind 40.1 87 0.003 21.4 8.6 47 34-86 49-96 (156)
80 2do4_A Squamous cell carcinoma 39.9 68 0.0023 20.1 7.9 46 34-86 27-73 (100)
81 3md3_A Nuclear and cytoplasmic 39.3 81 0.0028 20.8 8.3 47 34-86 97-144 (166)
82 2cqb_A Peptidyl-prolyl CIS-tra 39.1 34 0.0012 21.6 3.6 47 34-86 22-69 (102)
83 1wxv_A BAG-family molecular ch 39.0 67 0.0023 20.3 5.1 25 35-59 31-55 (92)
84 4f25_A Polyadenylate-binding p 38.9 80 0.0027 20.6 7.7 45 34-86 15-60 (115)
85 3sde_A Paraspeckle component 1 38.6 75 0.0026 23.7 6.1 46 34-86 106-152 (261)
86 1rk8_A CG8781-PA, CG8781-PA pr 38.3 98 0.0034 21.5 8.5 47 34-86 82-129 (165)
87 3dnp_A Stress response protein 38.1 38 0.0013 25.0 4.3 31 27-61 195-225 (290)
88 3r4c_A Hydrolase, haloacid deh 37.9 39 0.0013 24.7 4.3 32 26-61 186-217 (268)
89 3d2w_A TAR DNA-binding protein 37.9 34 0.0012 21.6 3.5 50 26-87 14-64 (89)
90 2dgo_A Cytotoxic granule-assoc 37.8 80 0.0027 20.3 8.6 47 34-86 25-72 (115)
91 4a8x_A RNA-binding protein wit 37.7 34 0.0012 20.7 3.4 48 34-86 14-62 (88)
92 3s7r_A Heterogeneous nuclear r 37.6 68 0.0023 19.4 7.7 47 34-86 21-68 (87)
93 1fjc_A Nucleolin RBD2, protein 37.6 33 0.0011 21.4 3.3 42 34-86 26-68 (96)
94 1wg1_A KIAA1579 protein, homol 37.4 25 0.00086 21.9 2.7 40 34-86 15-55 (88)
95 2hgl_A HNRPF protein, heteroge 37.3 1E+02 0.0035 21.4 6.4 54 26-86 47-103 (136)
96 2cph_A RNA binding motif prote 36.9 78 0.0027 19.9 5.4 47 34-86 25-73 (107)
97 2dnn_A RNA-binding protein 12; 36.5 45 0.0016 22.3 4.1 54 24-86 17-71 (109)
98 2cq4_A RNA binding motif prote 36.5 67 0.0023 20.7 4.9 47 34-86 35-82 (114)
99 2kn4_A Immunoglobulin G-bindin 36.5 86 0.0029 21.3 5.7 54 26-86 73-127 (158)
100 2cpe_A RNA-binding protein EWS 36.4 34 0.0012 22.1 3.4 48 34-86 25-80 (113)
101 2dnm_A SRP46 splicing factor; 36.2 50 0.0017 20.8 4.1 46 34-85 23-69 (103)
102 2div_A TRNA selenocysteine ass 36.0 78 0.0027 19.7 6.9 47 34-86 19-67 (99)
103 2qlc_A DNA repair protein RADC 36.0 30 0.001 24.5 3.2 29 23-51 70-104 (126)
104 1x4c_A Splicing factor, argini 35.6 58 0.002 21.0 4.4 49 23-85 15-64 (108)
105 1nrw_A Hypothetical protein, h 35.5 43 0.0015 25.1 4.2 33 25-61 207-239 (288)
106 2khc_A Testis-specific RNP-typ 35.4 50 0.0017 21.4 4.1 52 27-85 44-96 (118)
107 1x5t_A Splicing factor 3B subu 35.4 55 0.0019 20.2 4.2 47 34-86 15-63 (96)
108 2zws_A Neutral ceramidase; pri 35.4 25 0.00085 31.3 3.2 42 27-69 60-103 (646)
109 3m1y_A Phosphoserine phosphata 35.2 24 0.00083 24.4 2.6 65 36-101 141-205 (217)
110 2e5j_A Methenyltetrahydrofolat 34.8 72 0.0025 19.9 4.7 42 34-86 29-71 (97)
111 3ulh_A THO complex subunit 4; 34.8 86 0.0029 19.8 8.3 46 34-86 39-85 (107)
112 1nf2_A Phosphatase; structural 34.8 44 0.0015 24.8 4.2 32 26-61 182-213 (268)
113 3mpo_A Predicted hydrolase of 34.0 47 0.0016 24.4 4.2 25 36-61 196-220 (279)
114 2e5h_A Zinc finger CCHC-type a 33.6 64 0.0022 19.8 4.2 47 34-86 26-73 (94)
115 2cpy_A RNA-binding protein 12; 33.4 36 0.0012 22.3 3.1 54 27-87 19-73 (114)
116 1x4h_A RNA-binding protein 28; 33.4 92 0.0031 19.7 5.9 47 34-86 25-72 (111)
117 2krb_A Eukaryotic translation 33.3 19 0.00064 22.1 1.5 42 37-86 20-62 (81)
118 4dw8_A Haloacid dehalogenase-l 33.1 50 0.0017 24.2 4.2 25 36-61 196-220 (279)
119 2dnl_A Cytoplasmic polyadenyla 32.9 22 0.00077 23.4 2.0 49 34-86 18-67 (114)
120 2err_A Ataxin-2-binding protei 32.9 57 0.0019 21.2 4.0 45 34-86 39-84 (109)
121 2f3j_A RNA and export factor b 32.4 67 0.0023 23.1 4.7 53 26-86 91-144 (177)
122 2ywk_A Putative RNA-binding pr 32.3 88 0.003 19.2 8.0 46 34-86 26-72 (95)
123 3dao_A Putative phosphatse; st 32.2 53 0.0018 24.5 4.3 25 36-61 210-234 (283)
124 3pgv_A Haloacid dehalogenase-l 32.2 52 0.0018 24.5 4.2 32 26-61 201-232 (285)
125 1t0y_A Tubulin folding cofacto 32.0 90 0.0031 21.3 5.1 45 1-56 3-47 (122)
126 3tve_T 50S ribosomal protein L 31.8 1.2E+02 0.004 20.4 5.9 45 12-63 12-56 (92)
127 3ucg_A Polyadenylate-binding p 31.6 87 0.003 18.9 7.1 47 34-86 16-63 (89)
128 1v6e_A Cytoskeleton-associated 31.6 90 0.0031 20.1 4.9 21 34-55 27-47 (95)
129 1rlm_A Phosphatase; HAD family 31.4 53 0.0018 24.4 4.1 25 36-61 190-214 (271)
130 2la4_A Nuclear and cytoplasmic 31.4 74 0.0025 19.9 4.3 41 34-86 37-78 (101)
131 3q2s_C Cleavage and polyadenyl 31.4 1.6E+02 0.0055 21.9 7.8 54 26-85 71-126 (229)
132 2jrs_A RNA-binding protein 39; 31.2 1.1E+02 0.0037 19.8 8.6 48 34-87 36-84 (108)
133 2fc8_A NCL protein; structure 31.2 53 0.0018 20.6 3.6 44 34-86 25-69 (102)
134 1wf1_A RNA-binding protein RAL 31.2 1E+02 0.0034 19.7 5.1 36 36-85 40-76 (110)
135 4a17_R RPL23A, 60S ribosomal p 30.9 1.6E+02 0.0055 21.8 7.1 57 22-87 88-147 (150)
136 2pe8_A Splicing factor 45; RRM 30.4 1.2E+02 0.004 20.0 5.4 44 37-85 26-70 (105)
137 1wf0_A TDP-43, TAR DNA-binding 30.0 38 0.0013 20.9 2.6 43 34-87 15-58 (88)
138 3abf_A 4-oxalocrotonate tautom 29.7 44 0.0015 19.5 2.8 33 26-59 4-41 (64)
139 1x1m_A Ubiquitin-like protein 29.4 1.1E+02 0.0038 20.2 5.1 20 36-56 45-66 (107)
140 2raq_A Conserved protein MTH88 29.4 98 0.0033 21.5 4.8 40 22-64 7-46 (97)
141 3iz5_X 60S ribosomal protein L 29.3 1.7E+02 0.0059 21.6 6.7 61 17-86 84-148 (152)
142 2okr_C MAP kinase-activated pr 29.3 2.3 8E-05 23.1 -2.8 15 8-22 3-17 (26)
143 1s2o_A SPP, sucrose-phosphatas 29.3 64 0.0022 23.7 4.2 33 25-61 153-185 (244)
144 3u5e_X 60S ribosomal protein L 29.0 1.7E+02 0.0058 21.4 7.1 60 18-86 75-138 (142)
145 1x5p_A Negative elongation fac 28.7 26 0.0009 22.1 1.7 40 35-86 24-64 (97)
146 2bz2_A Negative elongation fac 28.6 41 0.0014 22.7 2.8 40 35-86 48-88 (121)
147 2rbk_A Putative uncharacterize 28.3 47 0.0016 24.4 3.3 31 27-61 180-210 (261)
148 3ftb_A Histidinol-phosphate am 28.2 49 0.0017 25.0 3.4 26 34-60 59-84 (361)
149 3ns6_A Eukaryotic translation 28.0 1.1E+02 0.0036 19.5 4.7 20 67-86 49-69 (100)
150 1l6r_A Hypothetical protein TA 27.8 74 0.0025 23.3 4.3 33 25-61 144-176 (227)
151 3md1_A Nuclear and cytoplasmic 27.5 1E+02 0.0034 18.3 8.5 47 34-86 11-58 (83)
152 3fkd_A L-threonine-O-3-phospha 27.5 37 0.0013 25.7 2.7 25 36-61 50-74 (350)
153 1x4g_A Nucleolysin TIAR; struc 27.4 1.1E+02 0.0037 19.5 4.7 41 34-86 35-76 (109)
154 1rkq_A Hypothetical protein YI 27.4 66 0.0023 24.1 4.1 32 26-61 190-221 (282)
155 3p1t_A Putative histidinol-pho 27.0 34 0.0011 25.6 2.3 26 34-60 49-74 (337)
156 2qfj_A FBP-interacting repress 26.8 1.6E+02 0.0055 20.4 8.2 47 34-86 135-182 (216)
157 3lqv_A PRE-mRNA branch site pr 26.6 56 0.0019 21.0 3.1 43 34-85 18-61 (115)
158 2nlw_A Eukaryotic translation 26.4 1E+02 0.0035 19.7 4.4 41 37-85 34-75 (105)
159 3l7y_A Putative uncharacterize 26.3 75 0.0026 24.0 4.2 25 36-61 227-251 (304)
160 2ytc_A PRE-mRNA-splicing facto 26.2 84 0.0029 18.8 3.8 41 34-86 22-63 (85)
161 3mdf_A Peptidyl-prolyl CIS-tra 26.1 1.1E+02 0.0037 18.2 7.2 47 34-86 17-64 (85)
162 2cjk_A Nuclear polyadenylated 25.7 47 0.0016 22.3 2.7 47 34-86 97-144 (167)
163 2g4b_A Splicing factor U2AF 65 25.5 1.5E+02 0.0052 19.7 7.2 46 34-85 104-150 (172)
164 2jwn_A Embryonic polyadenylate 25.4 1.4E+02 0.0048 19.3 7.2 48 34-87 46-94 (124)
165 3r8s_T 50S ribosomal protein L 25.3 1.2E+02 0.0041 20.5 4.6 39 12-55 17-56 (93)
166 2hj8_A Interferon-induced 17 k 25.2 1.3E+02 0.0045 18.8 7.3 35 22-60 15-49 (88)
167 3beg_B Splicing factor, argini 25.2 54 0.0019 21.5 2.9 47 25-85 18-65 (115)
168 1iv3_A 2-C-methyl-D-erythritol 25.0 55 0.0019 24.4 3.1 32 28-61 100-131 (152)
169 1t0a_A 2C-methyl-D-erythritol 24.9 59 0.002 24.4 3.2 33 28-62 102-134 (159)
170 3w1s_C Ubiquitin-like protein 24.8 1.3E+02 0.0043 20.2 4.7 23 4-26 7-29 (91)
171 1fxl_A Paraneoplastic encephal 24.8 1.5E+02 0.0052 19.4 8.4 47 34-86 12-59 (167)
172 1b7f_A Protein (SXL-lethal pro 24.7 1.6E+02 0.0053 19.5 8.1 47 34-86 99-146 (168)
173 1gx1_A 2-C-methyl-D-erythritol 24.7 59 0.002 24.4 3.2 33 28-62 101-133 (160)
174 2b30_A Pvivax hypothetical pro 24.5 77 0.0026 24.3 4.0 32 26-61 216-247 (301)
175 2do0_A HnRNP M, heterogeneous 24.3 1.4E+02 0.0048 18.9 5.8 46 34-86 25-71 (114)
176 2dnq_A RNA-binding protein 4B; 24.2 1.2E+02 0.004 18.5 4.3 39 34-86 18-57 (90)
177 2kjr_A CG11242; UBL, ubiquitin 24.1 1.6E+02 0.0054 19.3 7.8 49 4-60 14-62 (95)
178 2yh0_A Splicing factor U2AF 65 24.0 1.8E+02 0.006 19.9 7.2 46 34-85 124-170 (198)
179 3bs3_A Putative DNA-binding pr 24.0 29 0.00098 20.6 1.1 25 32-58 46-70 (76)
180 3hdo_A Histidinol-phosphate am 23.8 45 0.0015 25.4 2.5 26 34-60 63-88 (360)
181 2ad9_A Polypyrimidine tract-bi 23.8 1.7E+02 0.0059 19.9 5.4 41 34-86 41-82 (119)
182 2jvo_A Nucleolar protein 3; nu 23.7 72 0.0025 20.8 3.2 39 34-86 41-80 (108)
183 3djh_A Macrophage migration in 23.6 79 0.0027 21.0 3.5 38 24-62 57-99 (114)
184 1why_A Hypothetical protein ri 23.4 91 0.0031 19.4 3.6 41 34-86 27-68 (97)
185 1fg7_A Histidinol phosphate am 23.4 45 0.0015 25.7 2.5 25 35-60 57-81 (356)
186 3b64_A Macrophage migration in 23.4 1.4E+02 0.0048 19.5 4.7 35 24-59 58-97 (112)
187 2pmp_A 2-C-methyl-D-erythritol 23.2 62 0.0021 24.3 3.1 32 28-61 103-134 (160)
188 2x4k_A 4-oxalocrotonate tautom 23.0 49 0.0017 18.8 2.1 33 26-59 6-43 (63)
189 1wi8_A EIF-4B, eukaryotic tran 22.6 1E+02 0.0034 19.4 3.7 55 25-87 17-73 (104)
190 1y7y_A C.AHDI; helix-turn-heli 22.5 30 0.001 20.3 1.0 24 32-57 49-72 (74)
191 3mlf_A Transcriptional regulat 22.5 62 0.0021 21.4 2.7 26 32-59 59-84 (111)
192 2daf_A FLJ35834 protein; hypot 22.5 1.6E+02 0.0053 20.9 5.0 27 34-60 35-61 (118)
193 3pgw_S U1-70K; protein-RNA com 22.4 2.4E+02 0.0082 23.3 6.9 46 34-85 112-158 (437)
194 1fje_B Nucleolin RBD12, protei 22.4 36 0.0012 23.3 1.5 46 34-85 23-68 (175)
195 2lea_A Serine/arginine-rich sp 22.4 38 0.0013 23.2 1.7 47 34-86 57-104 (135)
196 3re3_A 2-C-methyl-D-erythritol 22.3 64 0.0022 24.2 3.0 32 29-62 107-138 (162)
197 4f02_A Polyadenylate-binding p 22.1 2.2E+02 0.0075 20.3 7.0 47 34-86 25-72 (213)
198 3egn_A RNA-binding protein 40; 22.0 1.8E+02 0.0062 19.3 5.7 49 34-85 55-106 (143)
199 1sjq_A Polypyrimidine tract-bi 21.9 74 0.0025 21.5 3.1 39 34-84 26-65 (105)
200 1zod_A DGD, 2,2-dialkylglycine 21.5 71 0.0024 25.1 3.3 30 31-61 80-109 (433)
201 2ghp_A U4/U6 snRNA-associated 21.3 2.5E+02 0.0086 20.7 6.3 47 34-86 127-174 (292)
202 2xcz_A Possible ATLS1-like lig 21.3 1.6E+02 0.0054 19.3 4.6 36 24-60 58-98 (115)
203 2gx5_A GTP-sensing transcripti 21.2 62 0.0021 24.2 2.7 47 15-79 20-66 (170)
204 2i2y_A Fusion protein consists 20.8 1.1E+02 0.0036 20.8 3.8 42 34-86 83-125 (150)
205 3td3_A Outer membrane protein 20.7 1.2E+02 0.0041 20.2 4.0 49 18-67 6-58 (123)
206 3fwt_A Macrophage migration in 20.5 77 0.0026 22.0 3.0 35 25-60 80-119 (133)
207 2ewt_A BLDD, putative DNA-bind 20.3 37 0.0013 19.8 1.1 24 32-57 46-69 (71)
208 2j76_E EIF-4B, EIF4B, eukaryot 20.1 76 0.0026 20.0 2.7 47 34-87 29-77 (100)
209 2lcw_A RNA-binding protein FUS 25.4 22 0.00075 23.3 0.0 47 34-86 17-72 (116)
No 1
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=100.00 E-value=8.4e-60 Score=354.03 Aligned_cols=130 Identities=65% Similarity=0.987 Sum_probs=125.6
Q ss_pred CCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCC
Q 032770 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDS 80 (134)
Q Consensus 1 m~~~~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds 80 (134)
|+| +|||+|++|++||||+|+||+|+|+|||.||||++||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||
T Consensus 1 m~~-~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~-~~d~VvV~g~rT~fG~gkstGfa~IYds 78 (135)
T 3u5c_Y 1 MSD-AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNS 78 (135)
T ss_dssp -CC-CCCEEEEEEEEEGGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTS-CGGGEEEEEEEECTTSSEEEEEEEEESS
T ss_pred CCC-cEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEeccCCceEEEEEEEeCC
Confidence 788 99999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhcCCchhhhhcCccccccc-chHhHHHHhhhhhhccchhhhhhhhccc
Q 032770 81 VESAKKFEPKYRLIRNGLATKVEK-SRKQMKERKNRQKKIRGVKKAKAEAGKK 132 (134)
Q Consensus 81 ~e~~kk~Epk~~l~R~~~~e~~k~-~rk~~ke~kn~~kk~rG~~k~~~~~~~k 132 (134)
+|+|++|||+|+|+||++.|+.++ ||+||||+||++||+|||++++++.+.+
T Consensus 79 ~d~akk~EPkyrL~R~gl~ek~~~~srk~~ke~knr~kk~rGt~k~~~~~~~~ 131 (135)
T 3u5c_Y 79 VAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVAR 131 (135)
T ss_dssp HHHHHHHSCHHHHHHHTSSCCCCCSCHHHHHHHHHHHHTCCSCSHHHHHHHHH
T ss_pred HHHHHhcCchheEeeccccccccCccHHHHHHHHhcchhhcchhhhhcccccc
Confidence 999999999999999999999885 9999999999999999999999987754
No 2
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=100.00 E-value=6.5e-58 Score=348.25 Aligned_cols=129 Identities=41% Similarity=0.686 Sum_probs=126.0
Q ss_pred cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 032770 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA 84 (134)
Q Consensus 5 ~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~ 84 (134)
+|||+|++|++||||+|+||+|+|+|||+||||++||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+|+|
T Consensus 2 ~vtirtrk~~~N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~-~~d~VvV~g~rT~fGggkStGfa~IYDs~e~a 80 (149)
T 2xzm_P 2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKV-DARNVVVYGFSTQYGGGKSTGFALVYDNQQYL 80 (149)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTC-CGGGEEEEEECCCSSSSEEEEEEEEESCHHHH
T ss_pred cEEEEecccccccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEeCCHHHH
Confidence 79999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhcCCchhhhhcCcccccccchHhHHHHhhhhhhccchhhhhhhhcccCC
Q 032770 85 KKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKKKK 134 (134)
Q Consensus 85 kk~Epk~~l~R~~~~e~~k~~rk~~ke~kn~~kk~rG~~k~~~~~~~k~~ 134 (134)
++|||+|+|+|||+.|+.+.||+|+||+||++||+|||++++++.+++++
T Consensus 81 Kk~EPkyrL~Rngl~ek~~~sRkqrKe~knr~kkvrGt~k~~~~~~~k~~ 130 (149)
T 2xzm_P 81 LKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGD 130 (149)
T ss_dssp HHHSCHHHHHHTTSSCCCCCHHHHHHHHHHHHTTSCHHHHHHHHTTSCSC
T ss_pred HhhCchheeeeccccccccCcHHHHHHHHhhhhhhcchhhhhcccccccc
Confidence 99999999999999999888999999999999999999999999888754
No 3
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.3e-60 Score=356.63 Aligned_cols=131 Identities=82% Similarity=1.240 Sum_probs=93.8
Q ss_pred ccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHH
Q 032770 4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVES 83 (134)
Q Consensus 4 ~~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~ 83 (134)
.+|||+|++|++||||+|+||+|+|+|||.||||++||+++||+||+++|+|+||||+|+|+||+|+|+|||+||||+|+
T Consensus 8 ~~vtirtrk~~~N~LL~Rke~v~dV~HpG~aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~IYds~d~ 87 (138)
T 3iz6_U 8 PAVTLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDNLDA 87 (138)
T ss_dssp SSCCCCCCCCCCBTTTTCCCCCCCCCCCSSCCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCCSSCHHH
T ss_pred ccEEEEEEEeeeccCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEEeCCHHH
Confidence 38999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred HHhcCCchhhhhcCcccccccchHhHHHHhhhhhhccchhhhhhhhcccCC
Q 032770 84 AKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIRGVKKAKAEAGKKKK 134 (134)
Q Consensus 84 ~kk~Epk~~l~R~~~~e~~k~~rk~~ke~kn~~kk~rG~~k~~~~~~~k~~ 134 (134)
|++|||+|+|+||++.|+.++||+||||+||++||+|||++++++.+++++
T Consensus 88 aKk~EPkyrL~R~gl~ek~~~srk~~ke~knr~kk~rGt~k~~~~~~~~~~ 138 (138)
T 3iz6_U 88 AKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138 (138)
T ss_dssp HHSSCCCBTTTTTCC------------------------------------
T ss_pred HHhcCchheEeeccccccccccHHHHHHHHhcchhhcchheeeccccccCC
Confidence 999999999999999999888999999999999999999999999988764
No 4
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=100.00 E-value=4.7e-45 Score=264.82 Aligned_cols=97 Identities=30% Similarity=0.562 Sum_probs=91.8
Q ss_pred cEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHH
Q 032770 5 AITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESA 84 (134)
Q Consensus 5 ~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~ 84 (134)
...|+|+++++||||+|+||+|+|+|||+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|
T Consensus 8 ~mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~a 86 (107)
T 2v94_A 8 EMEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDL-NPETTVIQYIRSYFGSYKSKGYAKYYYDKDRM 86 (107)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTC-CGGGEEEEEEECCTTCSEEEEEEEEESSHHHH
T ss_pred eeEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHH
Confidence 47899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HhcCCchhhhhcCccccc
Q 032770 85 KKFEPKYRLIRNGLATKV 102 (134)
Q Consensus 85 kk~Epk~~l~R~~~~e~~ 102 (134)
++|||+|+|+||++.+++
T Consensus 87 kk~Epky~L~R~g~~e~~ 104 (107)
T 2v94_A 87 LYIEPEYILIRDGIIEKK 104 (107)
T ss_dssp HHHSCHHHHHHTTC----
T ss_pred HhhCchheeeecCccccc
Confidence 999999999999998764
No 5
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=100.00 E-value=8.2e-45 Score=259.99 Aligned_cols=95 Identities=29% Similarity=0.399 Sum_probs=92.5
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770 7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK 86 (134)
Q Consensus 7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk 86 (134)
.|+|.++++||||+|+||+|+|+|||+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~-~~~~vvv~~~~t~fG~gks~G~a~IYds~e~~kk 80 (98)
T 2g1d_A 2 DLIIKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGV-DKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML 80 (98)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHS-CSTTEECCCCCCCSSSSEEEEEEEEESHHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence 589999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchhhhhcCccccc
Q 032770 87 FEPKYRLIRNGLATKV 102 (134)
Q Consensus 87 ~Epk~~l~R~~~~e~~ 102 (134)
|||+|+|+||++.+++
T Consensus 81 ~Epky~l~R~~~~~~~ 96 (98)
T 2g1d_A 81 YEPDYELIRNGLKQKE 96 (98)
T ss_dssp HCTTSCSCSSCCCSSC
T ss_pred hCcceeeeecCccccc
Confidence 9999999999998763
No 6
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=100.00 E-value=1.2e-43 Score=255.14 Aligned_cols=93 Identities=25% Similarity=0.424 Sum_probs=91.0
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770 7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK 86 (134)
Q Consensus 7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk 86 (134)
.|.|.++++||||+|+||+|+|+| |+|||||+||+++||+||++ ++|+|||++|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~~~Vvv~~~~t~fG~gkstG~a~IYds~e~akk 79 (101)
T 1xn9_A 2 DIKIIKDKKNPLLNRRELDFIVKY-EGSTPSRNDVRNKLAAMLNA-PLELLVIQRIKTEYGMQESKGYAKLYEDADRMKQ 79 (101)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SSSCCCHHHHHHHHHHHTTC-CTTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEeeEecCCCceEEEEEEEECCHHHHHh
Confidence 589999999999999999999999 89999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchhhhhcCcccc
Q 032770 87 FEPKYRLIRNGLATK 101 (134)
Q Consensus 87 ~Epk~~l~R~~~~e~ 101 (134)
|||+|+|+||++.++
T Consensus 80 ~Epky~L~R~g~~e~ 94 (101)
T 1xn9_A 80 VEQEYVLKRNAVPGS 94 (101)
T ss_dssp HHTGGGCCCCSCCCC
T ss_pred hCchheeeecCcccc
Confidence 999999999999875
No 7
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=100.00 E-value=2.8e-43 Score=253.71 Aligned_cols=93 Identities=23% Similarity=0.311 Sum_probs=90.5
Q ss_pred EEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHh
Q 032770 7 TIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKK 86 (134)
Q Consensus 7 ~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk 86 (134)
.|.|.++++||||+|+||+|+|+| |+|||||+||+++||+||++ ++|+||||+|+|+||+|+|+|||+||||+|+|++
T Consensus 2 ei~I~~~~~N~LL~Rke~~~~v~H-~~~tpsk~eirekLAk~~~~-~~d~Vvv~~~~T~fG~gkstG~a~IYds~e~akk 79 (102)
T 1ywx_A 2 DISIISDRNNPLLQRREIKFTVSF-DAATPSIKDVKMKLVAVLNA-NKQVLVVDTLDQIFGKLEAEGYAKIYNDEKAMAT 79 (102)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEC-SSCCCCHHHHHHHHHHHHTS-CSTTEEEEEEEECSSSSEEEEEEEECSCHHHHHH
T ss_pred cEEEEEeeecCCcCcEEEEEEEEc-CCCCCCHHHHHHHHHHHHCC-CCCEEEEEccEecCCCceEEEEEEEECCHHHHHh
Confidence 488999999999999999999999 78999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchhhhhcCcccc
Q 032770 87 FEPKYRLIRNGLATK 101 (134)
Q Consensus 87 ~Epk~~l~R~~~~e~ 101 (134)
|||+|+|+||++.++
T Consensus 80 ~Epky~L~R~gl~e~ 94 (102)
T 1ywx_A 80 IETKSVLEKNKIEEE 94 (102)
T ss_dssp SSCHHHHHHSCSCCC
T ss_pred hCchhheeecCccch
Confidence 999999999999875
No 8
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.38 E-value=9.2 Score=23.95 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..||++.++.. ++ .++-++.+ ..|.+.|||.| |++.+.+.+
T Consensus 20 ~~~t~~~l~~~F~~~-~i--~~v~i~~~-----~~g~~~g~afV~f~~~~~a~~ 65 (91)
T 2dgw_A 20 FNVTEKNVMEFLAPL-KP--VAIRIVRN-----AHGNKTGYIFVDFSNEEEVKQ 65 (91)
T ss_dssp SSCCHHHHHHHHTTS-CC--SEEEEEEC-----TTSCEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Cc--eEEEEEEC-----CCCCCceEEEEEECCHHHHHH
Confidence 567889999988766 66 34444443 35778899988 677766554
No 9
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=70.56 E-value=17 Score=22.88 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. ...|.|..-...-|.+.+.|||.| |+|.+.|.+
T Consensus 15 ~~~t~~~l~~~F~-~~G~--i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~ 65 (98)
T 2cpf_A 15 FSTTEETLKGVFS-KVGA--IKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQK 65 (98)
T ss_dssp TTCCHHHHHHHHH-TTSC--EEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC--eEEEEEEecCCCCCCcCcccEEEEEECCHHHHHH
Confidence 4577889988885 4554 122222211222256799999988 788777655
No 10
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=69.78 E-value=12 Score=23.52 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHhHcC--CCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYD--VRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~--~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+ ..|| . =.++-++.+ -..|.+.|||.| |.|.+.|.+
T Consensus 11 ~~~t~~~l~~~F-~~~G~~~-v~~v~i~~~----~~~g~~kG~afV~f~~~~~a~~ 60 (90)
T 3p5t_L 11 WWTTDEDLTEAV-HSLGVND-ILEIKFFEN----RANGQSKGFALVGVGSEASSKK 60 (90)
T ss_dssp TTCCHHHHHHHH-HTTTCCC-CCCEEEEEC----TTTCCEEEEEEECC-CHHHHHH
T ss_pred CCCCHHHHHHHH-HHhCCCc-eEEEEEEec----CCCCccCcEEEEEECCHHHHHH
Confidence 456788999888 4566 2 234444432 235778999988 777776653
No 11
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=66.36 E-value=10 Score=26.13 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=29.0
Q ss_pred HHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 38 KAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 38 r~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
.+||++..+ .||. =.++.|+..-.+.-+.+.+.|||.| |.+.+.|.+
T Consensus 39 eedl~eef~-k~G~-V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~ 86 (118)
T 3ue2_A 39 EGEVTEECG-KFGA-VNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 86 (118)
T ss_dssp HHHHHHHHT-TTSC-EEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHH
T ss_pred HHHHHHHHh-ccCC-EeEEEEeecCCCcccCCcceEEEEEEECCHHHHHH
Confidence 356666664 6675 3445555444433356788899888 777776643
No 12
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.64 E-value=23 Score=22.50 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++..|+. =.++-++.+ . .+.+.|||.| |+|.+.|.+
T Consensus 19 ~~~t~~~l~~~F~~~~G~-v~~v~i~~~----~-~g~~~g~afV~f~~~~~a~~ 66 (104)
T 2dhg_A 19 PDVDDGMLYEFFVKVYPS-CRGGKVVLD----Q-TGVSKGYGFVKFTDELEQKR 66 (104)
T ss_dssp TTCCHHHHHHHHHHHCTT-EEEEEEEEC----T-TCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-eEEEEEEEC----C-CCCccceEEEEECCHHHHHH
Confidence 457889999999776775 223333322 2 4568888877 777776644
No 13
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=64.88 E-value=12 Score=24.07 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=32.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770 27 DVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 87 (134)
-|-.. ....+.++|++.++.. ++ .++-++ ..-..+.+.|||.| |.+.+.|.+.
T Consensus 19 ~V~nL-p~~~t~~~l~~~F~~~-gi--~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~A 72 (103)
T 2dng_A 19 YVGNL-PFNTVQGDIDAIFKDL-SI--RSVRLV----RDKDTDKFKGFCYVEFDEVDSLKEA 72 (103)
T ss_dssp EEESC-CTTCCHHHHHHHTTTS-CE--EEEEEE----ECSSSCSEEEEEEEEESSHHHHHHH
T ss_pred EEeCC-CCCCCHHHHHHHHHhC-Cc--eEEEEe----ecCCCCccceEEEEEECCHHHHHHH
Confidence 34443 3567888888877554 55 233333 23344678888887 7787777654
No 14
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=64.69 E-value=19 Score=22.92 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++.+ . .+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~---~--~g~~~g~afV~f~~~~~A~~ 71 (105)
T 2dnh_A 25 KQQSEEDVLRLFQ-PFGV-IDECTVLRG---P--DGSSKGCAFVKFSSHTEAQA 71 (105)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEEEC---S--SSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEEC---C--CCCcCcEEEEEeCCHHHHHH
Confidence 4667888888774 4554 123333322 2 3678888887 777776654
No 15
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=63.69 E-value=8.4 Score=28.36 Aligned_cols=31 Identities=6% Similarity=-0.024 Sum_probs=21.0
Q ss_pred eEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 56 AIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 56 ~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
+.|+....+....+.+.||+.| |.+.+.|.+
T Consensus 159 ~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~ 190 (222)
T 3dxb_A 159 VIIYQEKQGEEEDAEIIVKIFVEFSIASETHK 190 (222)
T ss_dssp EEEEEEECCSSTTCCEEEEEEEEESSHHHHHH
T ss_pred EEEecCCCCcccCcCceeEEEEEECCHHHHHH
Confidence 3444444454556689999999 888877653
No 16
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=63.46 E-value=27 Score=22.74 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++.+- -.+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~~----~~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpz_A 35 QEFGDQDLLQMFM-PFGN-VVSAKVFIDK----QTNLSKCFGFVSYDNPVSAQA 82 (115)
T ss_dssp SSCCHHHHHHHHG-GGSC-CSEEEEEECS----SSCSEEEEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEECC----CCCCcCccEEEEECCHHHHHH
Confidence 4567889998885 5564 2344444332 34678888887 778777654
No 17
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.23 E-value=13 Score=23.73 Aligned_cols=45 Identities=27% Similarity=0.589 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++.+ .+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~------~g~~~g~afV~f~~~~~A~~ 70 (103)
T 2d9p_A 25 DGIDDERLRKAFS-PFGT-ITSAKVMME------GGRSKGFGFVCFSSPEEATK 70 (103)
T ss_dssp TTCCHHHHHHTTT-TTSC-EEEEEEEEC------SSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEEcC------CCCcCEEEEEEECCHHHHHH
Confidence 4577888887774 4554 123333322 5778888877 777776654
No 18
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.94 E-value=27 Score=22.26 Aligned_cols=47 Identities=13% Similarity=0.331 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++. +...-..+.+.|||.| |.|.+.+.+
T Consensus 26 ~~~t~~~l~~~F~~-~G~-v~~v~----i~~~~~~g~~~g~afV~f~~~~~a~~ 73 (105)
T 2dh8_A 26 WSTTQETLRSYFSQ-YGE-VVDCV----IMKDKTTNQSRGFGFVKFKDPNCVGT 73 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEE----EEECSSSCCEEEEEEEEESSTTHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EeeCCCCCCcceEEEEEECCHHHHHH
Confidence 46788899988855 553 12222 3333345678889887 677766544
No 19
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.78 E-value=16 Score=25.22 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCC---CCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRD---ANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~---~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
.+-|-.- ....+.+||++-++..-.+ . .++.++.+ . .|.++|||.| |++.+.|.
T Consensus 25 ~v~V~nL-p~~~te~dl~~~F~~~g~v-~g~v~~v~i~~d-~----~gr~~G~aFV~F~~~~~A~ 82 (123)
T 2dha_A 25 IVRMRGL-PFTATAEEVVAFFGQHCPI-TGGKEGILFVTY-P----DGRPTGDAFVLFACEEYAQ 82 (123)
T ss_dssp EEEECSC-CTTCCHHHHHHHHHTTSCC-TTGGGGEEEEEC-T----TSCEEEEEEECCSSHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHHhhCCc-cCCcceEEEEEC-C----CCCEeeEEEEEECCHHHHH
Confidence 4444443 3567889999999654333 2 35666654 2 3678899988 55655554
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=60.00 E-value=32 Score=23.20 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.+.. ||. =.++.++.+-.| |.+.+.|||.| |.+.+.|..
T Consensus 13 ~~~te~~l~~~F~~-~G~-i~~v~i~~~~~~--~~~~~~g~afV~f~~~~~A~~ 62 (175)
T 3nmr_A 13 RTWSEKDLRELFEQ-YGA-VYEINVLRDRSQ--NPPQSKGCCFVTFYTRKAALE 62 (175)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEEEECSS--SSCEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC-EEEEEEEecCCC--CCCCcceEEEEEECCHHHHHH
Confidence 56788899988854 554 223333322221 23489999988 777776654
No 21
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=59.04 E-value=32 Score=21.89 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++ .||. =.++ .+......+.+.|||.| |.|.+.|.+
T Consensus 33 ~~~t~~~l~~~f~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 80 (106)
T 1p27_B 33 EEATEEDIHDKFA-EYGE-IKNI----HLNLDRRTGYLKGYTLVEYETYKEAQA 80 (106)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEE----EEEECTTTSSEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCC-eEEE----EEEecCCCCceeeEEEEEECCHHHHHH
Confidence 4678889988884 4554 1222 23344455788899988 888777654
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=57.73 E-value=20 Score=22.77 Aligned_cols=47 Identities=15% Similarity=0.410 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHhHcCCCC-CCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRD-ANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~-~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.+||++.++. ||. . .++-++. .-..|.+.|||.| |.|.+.|.+
T Consensus 11 ~~~te~~l~~~F~~-~G~-~v~~v~i~~----d~~t~~~rg~aFV~F~~~~~A~~ 59 (91)
T 2lxi_A 11 QAATEDDIRGQLQS-HGV-QAREVRLMR----NKSSGQSRGFAFVEFSHLQDATR 59 (91)
T ss_dssp SSCCHHHHHHHHHH-HTC-CCSBCCSSS----CSSSCCCSSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-EeEEEEEEe----cCCCCCcCceEEEEecCHHHHHH
Confidence 56788999999854 563 2 2332322 2345677888877 788777765
No 23
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.49 E-value=33 Score=21.64 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. ||. =.++.++ .....|.+.|||.| |.|.+.|.+
T Consensus 18 ~~~~~~~l~~~f~~-~G~-i~~~~i~----~~~~~g~~~g~afV~f~~~~~a~~ 65 (104)
T 1p1t_A 18 YEATEEQLKDIFSE-VGP-VVSFRLV----YDRETGKPKGYGFCEYQDQETALS 65 (104)
T ss_dssp TTSCHHHHHHHHHT-TSC-CSEEEEE----EETTTTEEEEEEEEECSCHHHHHH
T ss_pred CcCCHHHHHHHHHh-cCC-eeEEEEE----eCCCCCccceEEEEEECCHHHHHH
Confidence 45778899988864 554 2333333 22335788999988 777776653
No 24
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.74 E-value=17 Score=23.56 Aligned_cols=47 Identities=21% Similarity=0.348 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++..=.+ .++++...+. .+.+.|||.| |+|.+.|.+
T Consensus 35 ~~~t~~~l~~~f~~~G~v--~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 35 PRVTERDLVSLFARFQEK--KGPPIQFRMM----TGRMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp TTCCHHHHHHHTHHHHHS--SSSCCEEEEE----CSSSCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCc--cceEEEEEcC----CCccceEEEEEECCHHHHHH
Confidence 567889999877655444 3333333333 4566677776 777766654
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=55.42 E-value=39 Score=21.82 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=35.8
Q ss_pred eeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 12 KFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 12 k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+|-..+-.-| -|-.- ....+.++|++.++ .||. =.++-++ ..-..|.+.|||.| |.|.+.|.+
T Consensus 10 ~~~en~~~~gt~l--fV~nL-p~~~te~~L~~~F~-~~G~-I~~v~i~----~d~~tg~~kG~afV~f~~~~~A~~ 76 (99)
T 4fxv_A 10 HHHENLYFQGTNL--IVNYL-PQNMTQDELRSLFS-SIGE-VESAKLI----RDKVAGHSLGYGFVNYVTAKDAER 76 (99)
T ss_dssp ------CCCCSEE--EEESC-CTTCCHHHHHHHHH-TTSC-EEEEEEE----ECSSSCCEEEEEEEEESSHHHHHH
T ss_pred cccccccCCCCEE--EEeCC-CCCCCHHHHHHHHH-hcCC-EEEeEee----ecCCCCcccccEEEEECCHHHHHH
Confidence 3445544443333 34443 35678899998885 4554 1222222 23345678899988 888887754
No 26
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=53.11 E-value=23 Score=21.06 Aligned_cols=48 Identities=17% Similarity=0.385 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++.++. +|. =.++. +...-..+.+.|||.| |+|.+.+.+.
T Consensus 9 ~~~t~~~l~~~F~~-~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~a 57 (75)
T 2mss_A 9 VNTTVEDVKHYFEQ-FGK-VDDAM----LMFDKTTNRHRGFGFVTFESEDIVEKV 57 (75)
T ss_dssp SSCCHHHHHHHHHT-TSC-CSEEC----CCBCSSSTTSCBEEEEECSCHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEE----EEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 46778899988855 554 22222 2233335678889987 7888877664
No 27
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=53.05 E-value=46 Score=21.96 Aligned_cols=51 Identities=12% Similarity=0.171 Sum_probs=33.0
Q ss_pred CCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 1 m~~~~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
|+++.++|++.. .+.+++.|.|.- |=+-..|.++.|...+++...+-|+|+
T Consensus 1 ~~~~~i~ikVk~------~~g~~v~~~vk~----~t~l~kl~~~y~~~~gi~~~~~rf~Fd 51 (91)
T 2io0_B 1 MANDHINLKVAG------QDGSVVQFKIKR----HTPLSKLMKAYCERQGLSMRQIRFRFD 51 (91)
T ss_dssp ---CEEEEEEEC------TTSCEEEEEEET----TSCTHHHHHHHHHHTTCCSTTEEEEET
T ss_pred CCCCeEEEEEEC------CCCCEEEEEECC----CChHHHHHHHHHHHhCCCcccEEEEEC
Confidence 666678888874 234578888743 344578899999999994444555553
No 28
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=52.86 E-value=14 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=21.2
Q ss_pred hHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 47 RMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 47 ~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
..||. =.++.++.+ .+ +.+.|||.| |++.+.|.+
T Consensus 49 ~~~G~-V~~v~i~~~----~~-~~~~G~~fV~f~~~~~A~~ 83 (104)
T 1jmt_A 49 EKYGE-VEEMNVCDN----LG-DHLVGNVYVKFRREEDAEK 83 (104)
T ss_dssp HHTCC-EEEEEECCS----SS-SSSEEEEEEEESCHHHHHH
T ss_pred ccCCc-eEEEEEEeC----CC-CCccEEEEEEECCHHHHHH
Confidence 56776 334444332 12 478899988 888887754
No 29
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=52.78 E-value=43 Score=21.46 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=31.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 27 DVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
-|-.. ....+..+|++.++ .||. |.-..+......|.+.|||.| |.|.+.|.+
T Consensus 30 ~V~nl-p~~~t~~~l~~~F~-~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 83 (110)
T 1oo0_B 30 FVTSI-HEEAQEDEIQEKFC-DYGE-----IKNIHLNLDRRTGFSKGYALVEYETHKQALA 83 (110)
T ss_dssp EEESC-CTTCCHHHHHHHHG-GGSC-----EEEEECCBCTTTSSBCSEEEEEESSHHHHHH
T ss_pred EEeCC-CCCCCHHHHHHHHH-hcCC-----EEEEEEEecCCCCCcceEEEEEECCHHHHHH
Confidence 34443 34678889988774 4554 112223333345677788877 777776654
No 30
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.40 E-value=26 Score=23.03 Aligned_cols=46 Identities=26% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++-++ .||. =.++.++. ... |.+.|||.| |+|.+.|.+
T Consensus 21 ~~~te~~L~~~F~-~~G~-v~~v~i~~----d~~-g~~rG~aFV~F~~~e~a~~ 67 (103)
T 1s79_A 21 TDATLDDIKEWLE-DKGQ-VLNIQMRR----TLH-KAFKGSIFVVFDSIESAKK 67 (103)
T ss_dssp TTCCHHHHHHHHH-TSSC-EEEEEEEC----CCT-TSCCCEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-hcCC-EEEEEEEE----CCC-CCCccEEEEEECCHHHHHH
Confidence 4577889988775 4664 22333332 223 678888877 888877755
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=52.15 E-value=32 Score=22.84 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++.+- .+.+.|||.| |+|.+.|.+
T Consensus 17 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~~-----~g~~~g~afV~F~~~~~A~~ 63 (116)
T 2fy1_A 17 RETNEKMLKAVFGK-HGP-ISEVLLIKDR-----TSKSRGFAFITFENPADAKN 63 (116)
T ss_dssp TTCCHHHHHHHHHT-SSC-CSEEEEECST-----TTTCCCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEECC-----CCCcccEEEEEECCHHHHHH
Confidence 45788899888854 554 2344444332 4567788877 777776654
No 32
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=51.54 E-value=18 Score=21.59 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++.++. +|. =.++.++.+- ..+.+.|||.| |.|.+.+.
T Consensus 10 ~~~t~~~l~~~F~~-~G~-v~~v~i~~~~----~~~~~~g~afV~f~~~~~a~ 56 (77)
T 1uaw_A 10 WQTTQEGLREYFGQ-FGE-VKECLVMRDP----LTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp SSCCSHHHHHHHTT-TSC-CCCEEEECCC----CSSSCSSEEEECCCCTTHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEecCC----CCCCcCceEEEEEcCHHHHH
Confidence 45678889888854 554 2455444432 34567788877 56666554
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.47 E-value=30 Score=21.88 Aligned_cols=47 Identities=19% Similarity=0.473 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++.+- ..+.+.|||.| |+|.+.|.+
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 1x5s_A 22 FDTNEQSLEQVFSK-YGQ-ISEVVVVKDR----ETQRSRGFGFVTFENIDDAKD 69 (102)
T ss_dssp TTCCHHHHHHHHHH-HSC-CCEEEECCCS----SSCSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEeCC----CCCCcccEEEEEECCHHHHHH
Confidence 56788999998865 454 2343333322 23556778776 777776654
No 34
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=51.14 E-value=40 Score=20.71 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. |+. =.++.++ . ..+.+.|||.| |.|.+.|.+
T Consensus 18 ~~~t~~~l~~~f~~-~G~-v~~~~i~----~--~~g~~~g~afV~f~~~~~a~~ 63 (92)
T 2dgv_A 18 FDFTWKMLKDKFNE-CGH-VLYADIK----M--ENGKSKGCGVVKFESPEVAER 63 (92)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE----E--SSSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE----c--cCCCcceEEEEEECCHHHHHH
Confidence 45678899888855 554 1222222 2 35678888887 777776654
No 35
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=51.08 E-value=43 Score=20.96 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. ||. |.-..+......|.+.|||.| |+|.+.|.+
T Consensus 12 ~~~t~~~l~~~F~~-~G~-----i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 59 (96)
T 2x1f_A 12 YDQTEEQILDLCSN-VGP-----VINLKMMFDPQTGRSKGYAFIEFRDLESSAS 59 (96)
T ss_dssp TTCCHHHHHHHHHT-TSC-----EEEEECCBCTTTCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-----EEEEEEEeCCCCCccceEEEEEECCHHHHHH
Confidence 45678888888854 453 111123333345677888887 778777654
No 36
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=51.00 E-value=6.6 Score=25.16 Aligned_cols=53 Identities=28% Similarity=0.484 Sum_probs=32.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
+-|-.. ....+..+|++.++..-.+ . + .++..-.| +.+.|||.| |.|.+.|.+
T Consensus 20 l~V~nL-p~~~t~~~l~~~F~~~G~v-~-~-~~~~~~~~----g~~~g~afV~f~~~~~a~~ 73 (101)
T 1fj7_A 20 LFIGNL-NPNKSVAELKVAISELFAK-N-D-LAVVDVRT----GTNRKFGYVDFESAEDLEK 73 (101)
T ss_dssp EEEECC-CTTSCHHHHHHHHHHHHHH-H-T-CCCCEEEE----ETTTTEEEEEESSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHHhCCc-c-e-EEEecCCC----CCcCcEEEEEECCHHHHHH
Confidence 334443 3567889999999776556 3 3 34444444 345567766 667665544
No 37
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=50.32 E-value=54 Score=21.91 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++. +...-..+.+.|||.| |+|.+.|.+
T Consensus 52 ~~~~~~~l~~~F~~-~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~ 99 (139)
T 1u6f_A 52 TTVDEVQLRQLFER-YGP-IESVK----IVCDRETRQSRGYGFVKFQSGSSAQQ 99 (139)
T ss_dssp TTCCHHHHHHHHHH-HSC-EEEEE----EEEETTTTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEE----EEEcCCCCCcceEEEEEECCHHHHHH
Confidence 45678899988855 453 12222 3333346788999987 788877654
No 38
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=50.24 E-value=44 Score=20.86 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=32.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
+-|-.- ....+.++|++.++. |+. -.+..++.. -..+.+.|||.| |.+.+.|.+
T Consensus 18 l~v~nL-p~~~t~~~l~~~F~~-~G~-v~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (98)
T 2cqp_A 18 IKVQNM-PFTVSIDEILDFFYG-YQV-IPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (98)
T ss_dssp EEEESC-CTTCCHHHHHHHTTT-SCC-CTTTCEEEE----CSSSCEEEEEEEEESCHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHH-cCC-ccceEEEEE----CCCCCeeeEEEEEECCHHHHHH
Confidence 334443 356778899887754 554 234434332 245678888887 778776654
No 39
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=49.96 E-value=45 Score=20.98 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++.+ +.|||.| |.|.+.|.+
T Consensus 10 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~ 52 (101)
T 2hvz_A 10 TGAGKGELERAFSY-YGP-LRTVWIARN---------PPGFAFVEFEDPRDAED 52 (101)
T ss_dssp SSCSHHHHHHHHHH-HCC-CSEEEEESS---------SSSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEeeC---------CCCEEEEEECCHHHHHH
Confidence 45688899988865 454 245555544 5567766 667666544
No 40
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=49.94 E-value=53 Score=21.70 Aligned_cols=47 Identities=26% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+ ..||. =.++.++. .-..+.+.|||.| |++.+.|.+
T Consensus 16 ~~~te~~L~~~F-~~~G~-i~~v~i~~----d~~tg~~rG~aFV~f~~~~~A~~ 63 (110)
T 3s8s_A 16 DNVRETFLKDMC-RKYGE-VEEVEILL----HPRTRKHLGLARVLFTSTRGAKE 63 (110)
T ss_dssp TTCCHHHHHHHH-TTTSC-EEEEEEEE----CTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-eeEEEEEE----CCCCCceeeEEEEEECCHHHHHH
Confidence 567888888877 44564 23333333 3344688999887 777777654
No 41
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.02 E-value=28 Score=22.68 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=30.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 27 DVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
-|-.. ....+.+||++.++ .+++ - ++.++.+ . .+.+.|||.| |.+.+.|.
T Consensus 19 ~V~nL-p~~~te~~l~~~F~-~~G~-~-~v~i~~d---~--~g~~~G~afV~F~~~~~a~ 69 (102)
T 1wez_A 19 HMRGL-PYRATENDIYNFFS-PLNP-M-RVHIEIG---P--DGRVTGEADVEFATHEDAV 69 (102)
T ss_dssp EEESC-CTTCCHHHHHHSSC-SCCC-S-EEEEEES---S--SSCEEEEEEEECSSSHHHH
T ss_pred EEeCC-CCCCCHHHHHHHHH-HcCc-e-EEEEEEC---C--CCCEeeEEEEEECCHHHHH
Confidence 34443 34567888888774 4666 3 5555444 2 4788899987 55555443
No 42
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.87 E-value=36 Score=22.60 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHH-HhcC
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESA-KKFE 88 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~-kk~E 88 (134)
.+-|-.. ....+..+|++.++ .|+. -.+.+++..- -.|.+.|||.| |.+.+.| +.++
T Consensus 27 ~l~V~nL-p~~~te~~l~~~F~-~~G~-v~~~~~~~~~----~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 27 CVYLKGL-PFEAENKHVIDFFK-KLDI-VEDSIYIAYG----PNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp EEEEECC-CTTCCHHHHHHHSC-SSCB-CTTTCEEEEC----TTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred EEEEeCC-CCCCCHHHHHHHHH-hcCC-ccceEEEEEC----CCCCCCeEEEEEECCHHHHHHHHH
Confidence 3334443 35677889888774 4554 3443333222 24677888887 4554443 3344
No 43
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.56 E-value=51 Score=20.81 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++ .|+. =.++.++ ..-..+.+.|||.| |+|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~ 72 (103)
T 2cqg_A 25 WKTTEQDLKEYFS-TFGE-VLMVQVK----KDLKTGHSKGFGFVRFTEYETQVK 72 (103)
T ss_dssp SSCCHHHHHHHHG-GGSC-EEEEEEE----ECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHH-hcCC-eEEEEEE----ecCCCCCccceEEEEECCHHHHHH
Confidence 4567888888884 4554 1233232 33334778889887 777776654
No 44
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.26 E-value=51 Score=20.79 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. |.-..+...-..+.+.|||.| |+|.+.|.+
T Consensus 25 ~~~t~~~l~~~f~-~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 72 (103)
T 2cq0_A 25 EDTRETDLQELFR-PFGS-----ISRIYLAKDKTTGQSKGFAFISFHRREDAAR 72 (103)
T ss_dssp TTCCHHHHHTTST-TTCC-----EEEEEEEECSSSCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-----eEEEEEeecCCCCceeeEEEEEECCHHHHHH
Confidence 4577788877664 3443 221223333345678888887 777776654
No 45
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.89 E-value=53 Score=20.87 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHcC-CCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYD-VRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~-~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++..-. + ..|.+ +...-+.+.+.|||.| |.|.+.|..
T Consensus 18 ~~~t~~~l~~~f~~~G~~v---~~v~i--~~~~~~~g~~~g~afV~f~~~~~A~~ 67 (109)
T 2dis_A 18 KMKKREEILEEIAKVTEGV---LDVIV--YASAADKMKNRGFAFVEYESHRAAAM 67 (109)
T ss_dssp TTSCHHHHHHHHHHHSTTE---EEEEC--CSSSCTTTTTCCEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHHhcCCc---eEEEE--EccCCCCCCcCcEEEEEecCHHHHHH
Confidence 46788999988866533 3 22222 2133345567777776 666665543
No 46
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=46.70 E-value=23 Score=25.93 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.++|.++| .|+......|++.||+ +++.++++|
T Consensus 174 ~~ei~~~~---~~K~~~l~~l~~~lgi-~~~~~ia~G 206 (258)
T 2pq0_A 174 STDVLPAG---GSKAEGIRMMIEKLGI-DKKDVYAFG 206 (258)
T ss_dssp EEEEEESS---CCHHHHHHHHHHHHTC-CGGGEEEEC
T ss_pred eEEEEECC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 35566654 7899999999999999 776666654
No 47
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=46.46 E-value=15 Score=23.07 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.|...+.. -..+.-|.=.+| +.+.|||.| |+|.+.|..
T Consensus 18 ~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~~----~~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 18 EKIKKDELKKSLHAIFSR-FGQILDILVSRS----LKMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp TTSCHHHHHHHHHHHHGG-GSCEEEEECCHH----HHHTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh-CCCEEEEEEEcC----CCcCcEEEEEeCCHHHHHH
Confidence 567788898544444433 222322322222 445567766 777776644
No 48
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=46.27 E-value=32 Score=21.86 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=28.9
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 28 VLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
|-.- ..+.+.++|++.++.. +. =.++.++.+- ..+.+.|||.| |.+.+.|.+
T Consensus 18 V~nl-p~~~t~~~l~~~F~~~-G~-i~~v~i~~~~----~~g~~~g~afV~f~~~~~A~~ 70 (106)
T 2dgp_A 18 IGQI-PRNLDEKDLKPLFEEF-GK-IYELTVLKDR----FTGMHKGCAFLTYCERESALK 70 (106)
T ss_dssp EESC-CTTCCHHHHHHHHHHH-SC-CCEEECCCCS----SSCSCCSEEEEEESSHHHHHH
T ss_pred EeCC-CCCCCHHHHHHHHHhc-CC-eeEEEEEecC----CCCCcceEEEEEECCHHHHHH
Confidence 4443 3567889999988654 53 1333333222 23456677766 566655543
No 49
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=46.26 E-value=50 Score=20.41 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. -.+.+++ .+.|||.| |+|.+.|.+
T Consensus 18 ~~~t~~~l~~~F~~-~G~-vv~~~~~----------~~~g~afV~f~~~~~A~~ 59 (93)
T 2cqh_A 18 PAVTADDLRQLFGD-RKL-PLAGQVL----------LKSGYAFVDYPDQNWAIR 59 (93)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCSSCEE----------EETTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHHH-cCC-ceEEEEE----------cCCCEEEEEECCHHHHHH
Confidence 45688899988855 453 1233333 25678887 778776644
No 50
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.71 E-value=59 Score=21.03 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++ ..--.+.+.|||.| |+|.+.|.+
T Consensus 27 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 74 (116)
T 2cqd_A 27 YHTTDASLRKYFE-GFGD-IEEAVVI----TDRQTGKSRGYGFVTMADRAAAER 74 (116)
T ss_dssp SSCCHHHHHHHHH-TTSC-EEEEEES----CCSSSCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-eeEEEEE----EcCCCCccceEEEEEECCHHHHHH
Confidence 4678899998885 4554 1222222 22223567778877 777777654
No 51
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.67 E-value=36 Score=20.70 Aligned_cols=48 Identities=21% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++.++ .||. =.++ .+...-..+.+.|||.| |+|.+.|.+.
T Consensus 15 ~~~t~~~l~~~f~-~~G~-i~~~----~i~~~~~~~~~~g~afV~f~~~~~a~~A 63 (85)
T 1x4e_A 15 PGTTDQDLVKLCQ-PYGK-IVST----KAILDKTTNKCKGYGFVDFDSPSAAQKA 63 (85)
T ss_dssp TTCCHHHHHTTST-TTSC-EEEE----EEECCSSSCSCCSEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEE----EEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 4567778776664 3443 1122 22333345677888877 7888777553
No 52
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=45.62 E-value=51 Score=20.33 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++ .|+. -.+..++.. -..+.+.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~~~~~~~----~~~g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ek1_A 25 FTVSIDEILDFFY-GYQV-IPGSVCLKY----NEKGMPTGEAMVAFESRDEATA 72 (95)
T ss_dssp TTCCHHHHHHHTT-TSCB-CTTCCEEEE----CTTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-ccceEEEEe----CCCCCEeeEEEEEECCHHHHHH
Confidence 4677889988774 4554 233433332 245678899988 777776654
No 53
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=45.42 E-value=76 Score=23.57 Aligned_cols=48 Identities=23% Similarity=0.338 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.|...+.. -..++-|.=++ .+.+.|||.| |.+.+.+..
T Consensus 19 ~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~----~~~~~g~afV~f~~~~~a~~ 67 (282)
T 3pgw_A 19 EKIKKDELKKSLYAIFSQ-FGQILDILVSR----SLKMRGQAFVIFKEVSSATN 67 (282)
T ss_pred CCCCHHHHHHHHHHHHhc-cCCeEEEEEcC----CCCcceEEEEEECCHHHHHH
Confidence 567788988766666554 23333332222 3456677766 666665543
No 54
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.59 E-value=26 Score=22.83 Aligned_cols=47 Identities=13% Similarity=0.328 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+ ..|+. =.++.++.+ ...+.+.|||.| |++.+.|.+
T Consensus 37 ~~~te~~l~~~F-~~~G~-i~~v~i~~~----~~~g~~~g~afV~f~~~~~a~~ 84 (116)
T 1x4b_A 37 FETTEESLRNYY-EQWGK-LTDCVVMRD----PASKRSRGFGFVTFSSMAEVDA 84 (116)
T ss_dssp TCCCHHHHHHHH-TSSCC-CSEEEEECC----TTTSSCCSEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-EEEEEEEEC----CCCCCcCceEEEEeCCHHHHHH
Confidence 567888998887 45664 234444433 233556777776 677766544
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.16 E-value=58 Score=20.54 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. +.-| .+......+.+.|||.| |++.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v-~i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (105)
T 1x5u_A 25 EKVSEPLLWELFLQ-AGP----VVNT-HMPKDRVTGQHQGYGFVEFLSEEDADY 72 (105)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEE-ECCBCSSSCSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----eEEE-EEEecCCCCcCCcEEEEEECCHHHHHH
Confidence 45778898888854 443 1122 22233234567777766 677766654
No 56
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=43.93 E-value=34 Score=24.91 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 35 NVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
..++......|++.+|+ +++.++++|
T Consensus 198 ~~~K~~~l~~l~~~lgi-~~~~~i~~G 223 (274)
T 3fzq_A 198 DFHKGKAIKRLQERLGV-TQKETICFG 223 (274)
T ss_dssp TCSHHHHHHHHHHHHTC-CSTTEEEEC
T ss_pred CCCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 36889999999999999 766666654
No 57
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=43.86 E-value=24 Score=24.46 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHH---HhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKL---ARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kL---A~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+..++++.| =..||. = ..|.+ .. .+.+.|||.| |+|.+.|.
T Consensus 39 ~~~~e~~L~~~L~~~F~~~G~-I-~~v~i--~~----~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 39 PEVPKEKLQALLYALASSQGD-I-LDIVV--DL----SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp TTSCHHHHHHHHHHHHHHHSC-E-EEEEE--CC----CCSSCCCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHhccCCC-e-EEEEe--cc----CCCcCCEEEEEECCHHHHH
Confidence 567778887644 355554 1 12232 22 2456677766 67766553
No 58
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=43.62 E-value=63 Score=20.76 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+.. |+. +.-|. +...- .+.+.|||.| |.+.+.+.+
T Consensus 35 ~~~t~~~l~~~F~~-~G~----i~~~~-i~~~~-~g~~~g~afV~f~~~~~a~~ 81 (114)
T 1x5o_A 35 LSMDEQELENMLKP-FGQ----VISTR-ILRDS-SGTSRGVGFARMESTEKCEA 81 (114)
T ss_dssp TTCCHHHHHHTTTT-TSC----EEEEE-EEECS-SSCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC----EEEEE-EEECC-CCCcceEEEEEECCHHHHHH
Confidence 45677888776643 443 22222 22222 5778888887 777776654
No 59
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=43.53 E-value=46 Score=22.06 Aligned_cols=55 Identities=18% Similarity=0.354 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCC--CCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRD--ANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~--~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
.+-|-.- ....+.+||++.+.. |+... .++.++.+ . . |.+.|||.| |.+.+.+.+
T Consensus 19 ~l~V~nL-p~~~te~~l~~~F~~-~G~~~~v~~v~i~~~---~-~-g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 19 VVKLRGL-PWSCSIEDVQNFLSD-CTIHDGVAGVHFIYT---R-E-GRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp EEEEESC-CTTCCHHHHHHHTTT-SCBTTGGGGEEEEEC---S-S-SCEEEEEEEEBSSHHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHHH-cCCccCceeEEEEEC---C-C-CCCCeEEEEEECCHHHHHH
Confidence 3445543 356788899888854 45311 23333332 2 2 678899988 777776654
No 60
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=43.32 E-value=55 Score=21.53 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
+-|... ....+.++|++.++. ||. =.++.++.+- .|.+.|||.| |.|.+.|.+
T Consensus 38 l~V~nl-p~~~t~~~l~~~F~~-~G~-v~~v~i~~~~-----~g~~~g~afV~f~~~~~A~~ 91 (124)
T 2kt5_A 38 LLVSNL-DFGVSDADIQELFAE-FGT-LKKAAVDYDR-----SGRSLGTADVHFERRADALK 91 (124)
T ss_dssp EEEESC-CSSCCHHHHHHHHHT-TSC-CSEEEEECCS-----SSSCCSEEEEEESSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHh-cCC-eeEEEEEECC-----CCCEeeEEEEEECCHHHHHH
Confidence 334443 356788999988865 554 2344443332 3566777776 777776654
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.31 E-value=59 Score=20.33 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++ ..-..+.+.|||.| |+|.+.+.+
T Consensus 20 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 67 (99)
T 2dgs_A 20 HNCGETELREYFKK-FGV-VTEVVMI----YDAEKQRPRGFGFITFEDEQSVDQ 67 (99)
T ss_dssp SSCCHHHHHHHHSS-SSC-EEEEEEC----CCTTTCSCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEE----eCCCCCCCCceEEEEECCHHHHHH
Confidence 45788888888754 553 1222222 22234566777776 777776654
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.13 E-value=57 Score=20.11 Aligned_cols=47 Identities=21% Similarity=0.474 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++ ..-..+.+.|||.| |+|.+.|.+
T Consensus 15 ~~~t~~~l~~~f~-~~G~-v~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 62 (95)
T 2dnz_A 15 FNITEDMLRGIFE-PFGK-IDNIVLM----KDSDTGRSKGYGFITFSDSECARR 62 (95)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEE----CCSSSCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EeEEEEe----ecCCCCceeeEEEEEECCHHHHHH
Confidence 4577888888884 4554 1233333 22234567777776 777777654
No 63
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=43.13 E-value=60 Score=20.36 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCC--------eEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDAN--------AIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~--------~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++ .||. -.+ +-+ ...-..|.+.|||.| |.|.+.+.+
T Consensus 23 ~~~t~~~l~~~F~-~~G~-i~~~~~~~~~~v~i----~~~~~~g~~~G~afV~f~~~~~a~~ 78 (99)
T 2la6_A 23 ENVTIESVADYFK-QIGI-IKTNKKTGQPMINL----YTDRETGKLKGEATVSFDDPPSAKA 78 (99)
T ss_dssp SSCCHHHHHHHHT-TTSC-BCEETTTTEESEEE----EECTTTCSEEEEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHH-HhCC-EeeccccccccEEE----EecCCCCCeeeEEEEEECCHHHHHH
Confidence 4578889988885 4554 222 222 222345678899887 777776654
No 64
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=43.10 E-value=14 Score=23.00 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhcC
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKFE 88 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~E 88 (134)
...+.++|++.++. ||. =.++.++.+- ..+.+.|||.| |+|.++.+.++
T Consensus 11 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~~----~~~~~~g~afV~f~~~~a~~a~~ 60 (90)
T 2ki2_A 11 YSATSEQVKELFSQ-FGK-VFNVKLIYDR----ETKKPKGFGFVEMQEESVSEAIA 60 (90)
T ss_dssp TTSSHHHHTTTHHH-HTC-CSEEEECCCS----SSCCCCEEEEEEECTTHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEEcC----CCCCcceEEEEEECCHHHHHHHH
Confidence 45778899888865 554 2343333322 23567777776 77777444443
No 65
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=42.81 E-value=80 Score=21.72 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++ .||. =.++.+ ...-..|.+.|||.| |+|.+.|.+
T Consensus 114 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 114 EDTEEHHLRDYFE-QYGK-IEVIEI----MTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-cCCC-eEEEEE----eecCCCCCccceEEEEECCHHHHHH
Confidence 4567788888774 5554 122222 233345678888888 777776653
No 66
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=42.51 E-value=47 Score=22.57 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++ .....+.+.|||.| |++.+.|.+
T Consensus 56 ~~~te~~L~~~F~-~~G~-I~~v~i~----~d~~tg~~~G~afV~F~~~~~A~~ 103 (129)
T 2kxn_B 56 LYTTERDLREVFS-KYGP-IADVSIV----YDQQSRRSRGFAFVYFENVDDAKE 103 (129)
T ss_dssp TSCCHHHHHHHHT-TTSC-EEEEEEE----CCSSSSCCCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEE----ecCCCCccceEEEEEECCHHHHHH
Confidence 4567888888774 4554 1233333 22234567778776 778777654
No 67
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.39 E-value=59 Score=20.49 Aligned_cols=45 Identities=4% Similarity=0.125 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++.+ -+. +.|||.| |+|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~----~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cqi_A 25 RDVTEVLILQLFSQ-IGP-CKSCKMITE----HTS--NDPYCFVEFYEHRDAAA 70 (103)
T ss_dssp TTCCHHHHHHHHHH-HSC-EEEEEEECC----CCS--SCCEEEEEESSHHHHHH
T ss_pred ccCCHHHHHHHHHh-cCC-EeEEEEEec----CCC--CCCEEEEEECCHHHHHH
Confidence 45688899988855 454 133444433 122 3567766 677666643
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.20 E-value=58 Score=19.99 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++ ..-..+.+.|||.| |++.+.|.+
T Consensus 25 ~~~t~~~l~~~f~~-~G~-v~~v~i~----~~~~~~~~~g~afV~f~~~~~A~~ 72 (95)
T 2cqc_A 25 LYTTERDLREVFSK-YGP-IADVSIV----YDQQSRRSRGFAFVYFENVDDAKE 72 (95)
T ss_dssp SSCCHHHHHHHHHT-TSC-EEEEEEE----ECSSSSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEEE----EcCCCCCcccEEEEEECCHHHHHH
Confidence 45788899888854 554 1233332 33344678888887 788777754
No 69
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=42.19 E-value=72 Score=21.02 Aligned_cols=47 Identities=15% Similarity=0.283 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++. +......+.+.|||.| |+|.+.|.+
T Consensus 73 ~~~~~~~l~~~f~-~~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~ 120 (140)
T 2ku7_A 73 EEVDDKVLHAAFI-PFGD-ITDIQ----IPLDYETEKHRGFAFVEFELAEDAAA 120 (140)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEE----CCCCTTTCCCCSEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEE----EeecCCCCCcCcEEEEEECCHHHHHH
Confidence 4577889988884 4554 11221 2222234567788877 777777654
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=42.16 E-value=62 Score=21.21 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.++ .|+. =.++ .|......+.+.|||.| |.|.+.|..
T Consensus 32 ~~~t~~~l~~~F~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 79 (126)
T 3ex7_B 32 EEATEEDIHDKFA-EYGE-IKNI----HLNLDRRTGYLKGYTLVEYETYKEAQA 79 (126)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEE----ECCBCTTTSSBCSCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEE----EEEecCCCCccceEEEEEECCHHHHHH
Confidence 5678889998885 4554 1122 22222235566777776 777776643
No 71
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=41.76 E-value=10 Score=22.73 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++-++. +|. =.++.++ .....+.+.|||.| |.|.+.+.+
T Consensus 9 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 56 (75)
T 1iqt_A 9 PDTPEEKIREYFGG-FGE-VESIELP----MDNKTNKRRGFCFITFKEEEPVKK 56 (75)
T ss_dssp SSCCHHHHHHHHHH-HSC-CSEECCC----CSCCCSSSCCCEEEECSSSHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEE----ecCCCCCcCCEEEEEECCHHHHHH
Confidence 45678899888865 554 2333222 22334567777776 666665544
No 72
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=41.74 E-value=89 Score=21.98 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+ ..||. .+++-| .+...--.|.+.|||.| |+|.+.|.+
T Consensus 65 ~~~te~~L~~~F-~~~G~--i~v~~v-~i~~d~~tg~skGfaFV~f~~~~~A~~ 114 (156)
T 3n9u_C 65 WWTTDQQLIQVI-RSIGV--YDVVEL-KFAENRANGQSKGYAEVVVASENSVHK 114 (156)
T ss_dssp TTCCHHHHHHHH-HHTTC--CCEEEE-EEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-HHHCC--ccEEEE-EEEecCCCCccceEEEEEECCHHHHHH
Confidence 567888999888 55662 012211 22222335678999988 888876654
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.68 E-value=64 Score=20.30 Aligned_cols=45 Identities=18% Similarity=0.486 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++.+ -+. +.|||.| |++.+.|.+
T Consensus 25 ~~~t~~~l~~~f~~-~G~-v~~v~i~~~----~~~--~~g~afV~f~~~~~a~~ 70 (103)
T 2cq3_A 25 FRFRDPDLRQMFGQ-FGK-ILDVEIIFN----ERG--SKGFGFVTFENSADADR 70 (103)
T ss_dssp TTCCHHHHHHHGGG-TSC-EEEEEEECC----TTT--TCCEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEEec----CCC--CcEEEEEEECCHHHHHH
Confidence 56788899888754 554 123333322 122 6677776 777776654
No 74
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=41.64 E-value=46 Score=21.70 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++ .||. =.++.++ ..-..|.+.|||.| |.|.+.+.+
T Consensus 35 ~~~te~~L~~~F~-~~G~-i~~v~i~----~~~~tg~~kg~afV~f~~~~~A~~ 82 (109)
T 2rs2_A 35 WQTTQEGLREYFG-QFGE-VKECLVM----RDPLTKRSRGFGFVTFMDQAGVDK 82 (109)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEC----CCTTTCCCTTCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-ccCC-eEEEEEE----ECCCCCCcCcEEEEEECCHHHHHH
Confidence 5677888888774 4554 1222222 22234667778877 777776654
No 75
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.49 E-value=63 Score=20.13 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++ .+......+.+.|||.| |.|.+.|.+
T Consensus 18 ~~~t~~~l~~~F~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 65 (99)
T 1whw_A 18 YTSSEEDLEKLFS-AYGP-LSEL----HYPIDSLTKKPKGFAFVTFMFPEHAVK 65 (99)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEE----ECCCCTTTCCCCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EeEE----EEEecCCCCCcCeEEEEEECCHHHHHH
Confidence 4578889988885 4453 1122 22223334667777776 777776654
No 76
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=41.36 E-value=57 Score=19.66 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.+ ...-..+.+.|||.| |+|.+.|..
T Consensus 16 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~ 63 (87)
T 3bs9_A 16 PEITTAAIAAAFA-PFGR-ISDARV----VKDMATGKSKGYGFVSFFNKWDAEN 63 (87)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEE----EECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EeEEEE----EecCCCCccceEEEEEECCHHHHHH
Confidence 4678899998885 4554 122222 233345678888877 777777654
No 77
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=41.24 E-value=65 Score=20.24 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++.+ ..||. =.++.++.+ . .+.+.|||.| |+|.+.|.
T Consensus 19 ~~~t~~~l~~~F-~~~G~-i~~v~i~~~---~--~g~~~g~afV~f~~~~~a~ 64 (102)
T 2xs2_A 19 VRMDETEIRSFF-ARYGS-VKEVKIITD---R--TGVSKGYGFVSFYNDVDVQ 64 (102)
T ss_dssp TTCCHHHHHHHH-GGGSC-EEEEEEEEC---T--TSCEEEEEEEEESSCCCHH
T ss_pred CCCCHHHHHHHH-HhCCC-eEEEEEEEC---C--CCCccceEEEEECCHHHHH
Confidence 467888998877 44554 122222222 2 5678888877 55544443
No 78
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.12 E-value=21 Score=23.83 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
+..+..+|++.++ .||. =.++.++ +.+.|||.| |++.+.|.
T Consensus 27 ~~~te~~L~~~F~-~~G~-V~~v~i~---------~~~rGfaFVeF~~~~~A~ 68 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGE-VLNLVLS---------SKKPGTAVVEFATVKAAE 68 (100)
T ss_dssp CSCCHHHHHHHHH-TTSC-EEEEEEE---------SSSSSEEEEEESCHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEc---------cCCCCEEEEEECCHHHHH
Confidence 4567888888874 5564 2333333 356788876 66666543
No 79
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=40.12 E-value=87 Score=21.38 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++. |...-..+.+.|||.| |+|.+.|.+
T Consensus 49 ~~~t~~~l~~~F~-~~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~ 96 (156)
T 1h2v_Z 49 FYTTEEQIYELFS-KSGD-IKKII----MGLDKMKKTACGFCFVEYYSRADAEN 96 (156)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEE----EEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEE----EEecCCCCccceEEEEEECCHHHHHH
Confidence 4577889888884 4554 12332 2333345678888887 778776654
No 80
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.87 E-value=68 Score=20.06 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++ ..- .+.+.|||.| |++.+.|.+
T Consensus 27 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~-~g~~~g~afV~f~~~~~a~~ 73 (100)
T 2do4_A 27 FSCTKEELEEICKA-HGT-VKDLRLV----TNR-AGKPKGLAYVEYENESQASQ 73 (100)
T ss_dssp TTCCHHHHHHHHTT-TSC-EEEEEEE----ECT-TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC-eEEEEEE----ECC-CCCEEeEEEEEECCHHHHHH
Confidence 45778899888854 553 1222222 222 5778888887 788777654
No 81
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=39.29 E-value=81 Score=20.82 Aligned_cols=47 Identities=19% Similarity=0.424 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+ ..||. =.++.++ .....|.+.|||.| |+|.+.|.+
T Consensus 97 ~~~t~~~l~~~f-~~~G~-i~~~~i~----~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 97 VNVDDETLRNAF-KDFPS-YLSGHVM----WDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp TTCCHHHHHHHH-TTSTT-EEEEEEE----ECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-hccCC-eeEEEEE----ecCCCCCcceEEEEEeCCHHHHHH
Confidence 456788888888 44554 2233333 23345678888887 777777654
No 82
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.15 E-value=34 Score=21.58 Aligned_cols=47 Identities=15% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++.+ ...+.+.|||.| |.|.+.|.+
T Consensus 22 ~~~t~~~l~~~f~~-~G~-i~~v~i~~~----~~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2cqb_A 22 EEVDDKVLHAAFIP-FGD-ITDIQIPLD----YETEKHRGFAFVEFELAEDAAA 69 (102)
T ss_dssp SSCCHHHHHHHHTT-TSC-CCCEECCCC----SSSCCCSSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHhhc-cCC-EEEEEEEec----CCCCCcceEEEEEECCHHHHHH
Confidence 45678899888855 554 244444333 233567788877 667666644
No 83
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=39.02 E-value=67 Score=20.35 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEE
Q 032770 35 NVSKAELKEKLARMYDVRDANAIFV 59 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~IvV 59 (134)
+.+-.+++++|+...+++..++-++
T Consensus 31 ~~TV~~LK~~i~~~~gip~~~qrL~ 55 (92)
T 1wxv_A 31 EPVVQDLAQVVEEVIGVPQSFQKLI 55 (92)
T ss_dssp SCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred cCcHHHHHHHHHHHHCcCHHHEEEE
Confidence 4667999999999999944444444
No 84
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=38.91 E-value=80 Score=20.62 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.++ .||. =.++-++.+ .+.+.|||.| |++.+.|.+
T Consensus 15 ~~~te~~L~~~F~-~~G~-v~~v~i~~d------~~~~kg~afV~f~~~~~A~~ 60 (115)
T 4f25_A 15 KSIDNKALYDTFS-AFGN-ILSCKVVCD------ENGSKGYGFVHFETQEAAER 60 (115)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEEEEE------TTEEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCC-EEEEEEeec------CCCCCceEEEEECCHHHHHH
Confidence 5678889988774 5664 223333322 2347788876 677776644
No 85
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=38.60 E-value=75 Score=23.71 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++ .||. =.++.++.+ ..|.+.|||.| |+|.+.|.+
T Consensus 106 ~~~t~~~l~~~F~-~~G~-i~~v~i~~~-----~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 106 PVVSNELLEQAFS-QFGP-VEKAVVVVD-----DRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEEEEEE-----TTSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEeeeC-----CCCCcCcEEEEEeCCHHHHHH
Confidence 4567888888884 5665 234444433 24667888876 777766543
No 86
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=38.34 E-value=98 Score=21.48 Aligned_cols=47 Identities=23% Similarity=0.384 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++ .||. =.++ .|...-..|.+.|||.| |.+.+.|..
T Consensus 82 ~~~t~~~L~~~F~-~~G~-i~~v----~i~~~~~~g~~~g~afV~f~~~~~A~~ 129 (165)
T 1rk8_A 82 EEAQEDEIQEKFC-DYGE-IKNI----HLNLDRRTGFSKGYALVEYETHKQALA 129 (165)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEE----EEEECTTTSSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHhh-cCCC-EEEE----EEEecCCCCcEeeEEEEEECCHHHHHH
Confidence 4567888888774 4554 1222 23333345678888887 777776654
No 87
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=38.13 E-value=38 Score=25.05 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=23.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 27 DVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
++.++| .++......|++.||+ +++.++++|
T Consensus 195 ei~~~~---~~K~~~l~~l~~~lgi-~~~~~i~~G 225 (290)
T 3dnp_A 195 NIVPKG---VSKEAGLALVASELGL-SMDDVVAIG 225 (290)
T ss_dssp EEEETT---CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEECC---CCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 455543 6899999999999999 776666654
No 88
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=37.94 E-value=39 Score=24.66 Aligned_cols=32 Identities=31% Similarity=0.299 Sum_probs=25.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
++|.++| .++....+.|++.||+ +++.++.+|
T Consensus 186 ~ei~~~~---~~K~~~l~~l~~~lgi-~~~~~ia~G 217 (268)
T 3r4c_A 186 ADVNVAG---TSKATGLSLFADYYRV-KVSEIMACG 217 (268)
T ss_dssp EEEEETT---CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEeeCC---CCHHHHHHHHHHHcCC-CHHHEEEEC
Confidence 4566654 6899999999999999 777666664
No 89
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=37.88 E-value=34 Score=21.63 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=31.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 87 (134)
+-|-+- ....+.++|++.++ .||. =.++.++. .+.|||.| |++.+.|...
T Consensus 14 l~V~~L-p~~~te~~L~~~F~-~~G~-i~~v~i~~---------~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 14 VFVGRC-TEDMTAEELQQFFC-QYGE-VVDVFIPK---------PFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp EEEESC-CTTCCHHHHHHHHT-TTSC-EEEEECCS---------SCCSEEEEEESCHHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHh-ccCC-EEEEEEee---------CCCCEEEEEECCHHHHHHH
Confidence 344443 45677888888874 4564 22333322 27789987 8999988743
No 90
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=37.81 E-value=80 Score=20.27 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++. |......+.+.|||.| |++.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~a~~ 72 (115)
T 2dgo_A 25 PEITTEDIKAAFA-PFGR-ISDAR----VVKDMATGKSKGYGFVSFFNKWDAEN 72 (115)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEEE----EEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEE----EEEcCCCCCcceEEEEEECCHHHHHH
Confidence 4577889988885 5554 12222 2233345778888877 677776654
No 91
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=37.72 E-value=34 Score=20.73 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. +.-|.=+.....++.+.|||.| |+|.+.|.+
T Consensus 14 ~~~t~~~l~~~F~~-~G~----i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~ 62 (88)
T 4a8x_A 14 RNVTKDHIMEIFST-YGK----IKMIDMPVERMHPHLSKGYAYVEFENPDEAEK 62 (88)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEECCEETTEEEEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC----EEEEEEEeCCCCCCCCCcEEEEEEecHHHHHH
Confidence 45678899888754 553 2222222333333457888876 777776654
No 92
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=37.63 E-value=68 Score=19.43 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.+ ..||. =.++.++ ..-..+.+.|||.| |.|.+.+.+
T Consensus 21 ~~~t~~~l~~~F-~~~G~-i~~v~i~----~~~~~g~~~g~afV~f~~~~~a~~ 68 (87)
T 3s7r_A 21 WDTSKKDLKDYF-TKFGE-VVDCTIK----MDPNTGRSRGFGFILFKDAASVEK 68 (87)
T ss_dssp TTCCHHHHHHHH-TTTSC-EEEEEEE----ECTTTCCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHH-HhCCC-EEEEEEe----ecCCCCccccEEEEEECCHHHHHH
Confidence 456788888887 44554 1233232 23345678888887 677666654
No 93
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=37.61 E-value=33 Score=21.40 Aligned_cols=42 Identities=33% Similarity=0.392 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. ++. +.++ ...+.+.|||.| |.|.+.|.+
T Consensus 26 ~~~t~~~l~~~F~~-~g~----v~~~------~~~~~~~g~afV~f~~~~~a~~ 68 (96)
T 1fjc_A 26 FNITEDELKEVFED-ALE----IRLV------SQDGKSKGIAYIEFKSEADAEK 68 (96)
T ss_dssp SSCCHHHHHHHHCS-EEE----ECCE------EETTEEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHhh-CCc----EEEe------CCCCCcceEEEEEECCHHHHHH
Confidence 45688888887755 332 1111 345678899988 777776654
No 94
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=37.35 E-value=25 Score=21.86 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++.. .+ .++. |. .+.|||.| |+|.+.+.+
T Consensus 15 ~~~t~~~l~~~F~~~-~v--~~~~-i~---------~~~g~afV~f~~~~~a~~ 55 (88)
T 1wg1_A 15 QDSNCQEVHDLLKDY-DL--KYCY-VD---------RNKRTAFVTLLNGEQAQN 55 (88)
T ss_dssp SSCCHHHHHHHTCSS-CC--CCEE-EE---------GGGTEEEECCSCHHHHHH
T ss_pred CCCCHHHHHHHHhhC-Ce--EEEE-Ee---------CCCcEEEEEECCHHHHHH
Confidence 567788999888766 66 3333 32 56678877 667666543
No 95
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=37.28 E-value=1e+02 Score=21.38 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=32.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCC--CCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRD--ANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~--~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
+-|-.- ....+.+||++.++. ++.-+ .++.++.+ . - |.+.|||.| |+|.+.|.+
T Consensus 47 lfVgnL-p~~~te~dL~~~F~~-~G~v~~v~~v~i~~d---~-~-g~srG~aFV~F~~~e~a~~ 103 (136)
T 2hgl_A 47 VKLRGL-PWSCSVEDVQNFLSD-CTIHDGAAGVHFIYT---R-E-GRQSGEAFVELGSEDDVKM 103 (136)
T ss_dssp EEEESC-CTTCCHHHHHHHTTT-CCCSSSSTTEEEEEC---S-S-SCEEEEEEEECSSHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHH-hCCcCceeEEEEEEC---C-C-CCCCeEEEEEECCHHHHHH
Confidence 334443 356788899888854 55311 24444433 1 2 778999987 667666543
No 96
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.90 E-value=78 Score=19.91 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeec-CCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTH-FGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~-fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. +.-|. |... -..+.+.|||.| |.+.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~----i~~v~-i~~~~~~~~~~~g~afV~f~~~~~a~~ 73 (107)
T 2cph_A 25 FQANQREIRELFST-FGE----LKTVR-LPKKMTGTGAHRGFGFVDFITKQDAKK 73 (107)
T ss_dssp TTCCHHHHHHHHHT-TSC----EEEEE-CCCCCSSSCSSCSEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHHc-cCC----eEEEE-EecCCCCCCCcCceEEEEECCHHHHHH
Confidence 45788899888854 553 11121 2222 235566777776 777776654
No 97
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.54 E-value=45 Score=22.27 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=33.2
Q ss_pred EEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 24 FVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 24 i~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
..+-|-.- ..+.+.+||++-+... ++ .++.++.+ .- |.+.|||.| |.+.+.|.+
T Consensus 17 ~~v~V~nL-p~~~te~dl~~~F~~~-~v--~~v~i~~d---~~--g~~~G~afV~F~~~~~a~~ 71 (109)
T 2dnn_A 17 LYVSVHGM-PFSAMENDVRDFFHGL-RV--DAVHLLKD---HV--GRNNGNGLVKFLSPQDTFE 71 (109)
T ss_dssp HEEEEECC-CSSCCHHHHHHHTTTS-CC--CEEEECCC---TT--CCCCSEEEEECSSHHHHHH
T ss_pred CEEEEeCC-CCCCCHHHHHHHhccC-Ce--eEEEEEEC---CC--CCCCeEEEEEECCHHHHHH
Confidence 34445543 4567889999988765 66 35555443 22 567788877 556555543
No 98
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.49 E-value=67 Score=20.68 Aligned_cols=47 Identities=11% Similarity=0.198 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.+. .||. =.++.+ ...-..+.+.|||.| |.+.+.|.+
T Consensus 35 ~~~t~~~l~~~F~-~~G~-i~~v~i----~~~~~~g~~~g~afV~f~~~~~a~~ 82 (114)
T 2cq4_A 35 ARIRPRDLEDFFS-AVGK-VRDVRI----ISDRNSRRSKGIAYVEFCEIQSVPL 82 (114)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEE----CCSCCSSSCCCCEEEEESCGGGHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EeEEEE----EecCCCCccCcEEEEEeCcHHHHHH
Confidence 4567888888774 4553 122222 222333567778876 777666654
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=36.48 E-value=86 Score=21.29 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=30.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
+-|-.. ....+.++|++.+ ..||. =.++.++. .-..|.+.|||.| |.|.+.+.+
T Consensus 73 l~v~nl-~~~~~~~~l~~~F-~~~G~-v~~~~i~~----~~~~g~~~g~afV~f~~~~~a~~ 127 (158)
T 2kn4_A 73 LKVDNL-TYRTSPDTLRRVF-EKYGR-VGDVYIPR----DRYTKESRGFAFVRFHDKRDAED 127 (158)
T ss_dssp EEEESC-CTTCCHHHHHHHH-HHHSC-EEEEECCC----CSSCTTSCCEEEEEESBHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHH-HhcCC-eEEEEEee----cCCCCccceEEEEEECCHHHHHH
Confidence 334443 3567889999888 45564 12222222 2124556777776 777766644
No 100
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.36 E-value=34 Score=22.07 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCC-------CeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDA-------NAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~-------~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+.-.. ++-++. .-..+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~----~~~~g~~~g~afV~f~~~~~A~~ 80 (113)
T 2cpe_A 25 DSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYL----DKETGKPKGDATVSYEDPPTAKA 80 (113)
T ss_dssp TTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCB----CTTTCSBCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCCEeEccccCccCEEEEE----eCCCCCeeeEEEEEECCHHHHHH
Confidence 45778899887754 444011 233322 2234567788877 777776654
No 101
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.17 E-value=50 Score=20.85 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++.++ .|+. =.++. |...-..+.+.|||.| |+|.+.|.
T Consensus 23 ~~~t~~~l~~~f~-~~G~-i~~v~----i~~~~~~~~~~g~afV~f~~~~~A~ 69 (103)
T 2dnm_A 23 YRTSPDSLRRVFE-KYGR-VGDVY----IPREPHTKAPRGFAFVRFHDRRDAQ 69 (103)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEE----CCBCSSSCSBCSCEEEEESSSSHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEE----EEeCCCCCCCCeEEEEEECCHHHHH
Confidence 4578889888775 4443 11222 2222233556677766 66655544
No 102
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.99 E-value=78 Score=19.65 Aligned_cols=47 Identities=11% Similarity=0.220 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCC-CeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDA-NAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~-~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. -. ++-++.+ -..+.+.|||.| |+|.+.|.+
T Consensus 19 ~~~t~~~l~~~F~~-~G~-i~~~v~i~~~----~~~g~~~g~afV~f~~~~~a~~ 67 (99)
T 2div_A 19 PYMDENFISRAFAT-MGE-TVMSVKIIRN----RLTGIPAGYCFVEFADLATAEK 67 (99)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCCEEEEEEC----SSSCCEEEEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-cceEEEEeec----CCCCCcCCEEEEEeCCHHHHHH
Confidence 45788899988855 554 23 4444332 235678889887 777776654
No 103
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=35.96 E-value=30 Score=24.49 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEEEEcC-CCCCCCHHHHH-----HHHHhHcCC
Q 032770 23 QFVIDVLHP-GRANVSKAELK-----EKLARMYDV 51 (134)
Q Consensus 23 Ei~~~v~H~-g~~Tpsr~eI~-----~kLA~~~~~ 51 (134)
-+.+-=.|| |.++||.+|+. .+.++.+++
T Consensus 70 ~vIl~HNHPSG~~~PS~~D~~~T~~l~~a~~ll~I 104 (126)
T 2qlc_A 70 SIILVHNHPSGDVQPSNADKQVTSILKKAGDLLQI 104 (126)
T ss_dssp EEEEEEECSSSCCSCCHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 344455789 67999999875 334455665
No 104
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.55 E-value=58 Score=20.98 Aligned_cols=49 Identities=16% Similarity=0.064 Sum_probs=27.8
Q ss_pred EEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 23 QFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 23 Ei~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+-|-.. ....+.+||++.++ .|+. =.++-++.+ |||.| |.+.+.|.
T Consensus 15 ~~~l~V~nL-p~~~t~~~l~~~F~-~~G~-i~~~~i~~~-----------g~afV~f~~~~~a~ 64 (108)
T 1x4c_A 15 ENRVVVSGL-PPSGSWQDLKDHMR-EAGD-VCYADVYRD-----------GTGVVEFVRKEDMT 64 (108)
T ss_dssp CCEEEEESC-CSSCCHHHHHHHHG-GGSC-EEEEEEETT-----------TEEEEEESSHHHHH
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHH-hcCC-EeEEEEecC-----------CEEEEEECCHHHHH
Confidence 344555554 36678889988775 5553 133333333 56665 66665443
No 105
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=35.48 E-value=43 Score=25.14 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.++|.++| .++...-..|++.+++ +++.++++|
T Consensus 207 ~lei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~~G 239 (288)
T 1nrw_A 207 NFELSSRK---ASKGQALKRLAKQLNI-PLEETAAVG 239 (288)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred cEEEecCC---CChHHHHHHHHHHhCC-CHHHEEEEc
Confidence 35666654 6788899999999999 766666554
No 106
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=35.45 E-value=50 Score=21.42 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=27.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 27 DVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
-|... ....+.++|++.++ .||. =.++ .+...-..+.+.|||.| |.|.+.+.
T Consensus 44 ~V~nl-p~~~t~~~l~~~F~-~~G~-i~~~----~i~~~~~~g~~~g~afV~f~~~~~A~ 96 (118)
T 2khc_A 44 FIYHL-PQEFTDTDLASTFL-PFGN-VISA----KVFIDKQTSLSKCFGFVSFDNPDSAQ 96 (118)
T ss_dssp EEECS-CTTCCHHHHHHHTT-TSCE-EEEE----EECCCSSSSCCCCEEEEEEESSHHHH
T ss_pred EEeCC-CCCCCHHHHHHHHH-hcCC-EEEE----EEEeCCCCCCcCcEEEEEECCHHHHH
Confidence 34443 34567888888774 4553 1122 22222234566777766 56655554
No 107
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.44 E-value=55 Score=20.22 Aligned_cols=47 Identities=15% Similarity=0.341 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe-EEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANA-IFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~-IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++ -++.+ -..+.+.|||.| |.|.+.|.+
T Consensus 15 ~~~t~~~l~~~F~~-~G~-i~~~~~i~~~----~~~g~~~g~afV~f~~~~~A~~ 63 (96)
T 1x5t_A 15 PEIDEKLLYDTFSA-FGV-ILQTPKIMRD----PDTGNSKGYAFINFASFDASDA 63 (96)
T ss_dssp TTCCHHHHHHHHHT-TSC-BSSCCEECCC----TTTCSCCSEEEEEBSSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eeEEEEEEEc----CCCCCcCeEEEEEECCHHHHHH
Confidence 45678899888855 554 2344 33322 234556677776 777776654
No 108
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=35.39 E-value=25 Score=31.33 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=33.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcC--CCCCCeEEEeceeecCCCC
Q 032770 27 DVLHPGRANVSKAELKEKLARMYD--VRDANAIFVFKFRTHFGGG 69 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~--~~~~~~IvV~~~~T~fG~~ 69 (134)
.+.-.+-+..-+.+|++.|++.|+ . +++.|+|..-.||-|-+
T Consensus 60 s~D~~~~~~~v~~~V~~~L~~~~g~~~-~~~nV~isaTHTHSgP~ 103 (646)
T 2zws_A 60 NTDLGMIFQAVHLKVLARLKAKYPGVY-DENNVMLAATHTHSGPG 103 (646)
T ss_dssp EESSSCCCHHHHHHHHHHHHHHSTTTC-CTTTEEEEECCBSBEEC
T ss_pred EECcccCCHHHHHHHHHHHHHHhCCCC-ChhHEEEEeeeeCCCCc
Confidence 333333344457899999999999 8 99999999999999875
No 109
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=35.17 E-value=24 Score=24.40 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHHhcCCchhhhhcCcccc
Q 032770 36 VSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATK 101 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~kk~Epk~~l~R~~~~e~ 101 (134)
-++.++-..+++.+++...++++|.+=.+-.-+....|..-++.+.+.++ -.+.|++.-+.+.+-
T Consensus 141 k~k~~~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~~~~~~l~-~~ad~v~~~~dl~~~ 205 (217)
T 3m1y_A 141 HSKGEMLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAFNAKEVLK-QHATHCINEPDLALI 205 (217)
T ss_dssp THHHHHHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEESCCHHHH-TTCSEEECSSBGGGG
T ss_pred CChHHHHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEECccHHHH-HhcceeecccCHHHH
Confidence 34568888899999994455666655444433344445555666666665 458898888877653
No 110
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.85 E-value=72 Score=19.92 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. ||. =. ..++. | .+.|||.| |+|.+.|.+
T Consensus 29 ~~~t~~~l~~~F~~-~G~-v~-~~~~~------~--~~~g~afV~f~~~~~a~~ 71 (97)
T 2e5j_A 29 RDARVSDLKRALRE-LGS-VP-LRLTW------Q--GPRRRAFLHYPDSAAAQQ 71 (97)
T ss_dssp TTCCHHHHHHHHHH-TTC-CC-SEEEE------E--TTTTEEEEECSSHHHHHH
T ss_pred CcCcHHHHHHHHHh-cCC-EE-EEEEc------C--CCCcEEEEEECCHHHHHH
Confidence 46778899988854 554 12 33332 2 45567766 777776643
No 111
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=34.83 E-value=86 Score=19.76 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+. .|+. =.++.++. .- .+.+.|||.| |.+.+.|.+
T Consensus 39 ~~~t~~~l~~~F~-~~G~-i~~v~i~~----~~-~g~~~g~afV~f~~~~~a~~ 85 (107)
T 3ulh_A 39 FGVSDADIQELFA-EFGT-LKKAAVHY----DR-SGRSLGTADVHFERKADALK 85 (107)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEEE----CT-TSCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEE----CC-CCCcceEEEEEECCHHHHHH
Confidence 4577888988875 4554 12222222 22 6678888887 788777754
No 112
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10
Probab=34.81 E-value=44 Score=24.84 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
++|.++| .++...-..|++.+++ +++.++++|
T Consensus 182 ~ei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~~G 213 (268)
T 1nf2_A 182 LEIVPKN---VDKGKALRFLRERMNW-KKEEIVVFG 213 (268)
T ss_dssp EEEECTT---CCHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EEEeCCC---CChHHHHHHHHHHcCC-CHHHeEEEc
Confidence 5666654 6889999999999999 766666554
No 113
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=34.00 E-value=47 Score=24.38 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 36 VSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.|+......|++.||+ +++.++++|
T Consensus 196 ~~K~~~l~~l~~~lgi-~~~~~i~~G 220 (279)
T 3mpo_A 196 ASKGGTLSELVDQLGL-TADDVMTLG 220 (279)
T ss_dssp CCHHHHHHHHHHHTTC-CGGGEEEC-
T ss_pred CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 6799999999999999 777777664
No 114
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.65 E-value=64 Score=19.82 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+. .|+. =.++. +...-..+.+.|||.| |+|.+.|.+
T Consensus 26 ~~~t~~~l~~~f~-~~G~-v~~v~----i~~~~~~~~~~g~afV~f~~~~~A~~ 73 (94)
T 2e5h_A 26 FSLTNNDLYRIFS-KYGK-VVKVT----IMKDKDTRKSKGVAFILFLDKDSAQN 73 (94)
T ss_dssp TTSCHHHHHHHTT-TTSC-EEEEE----ECCCSSSCCCTTCEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEE----EEeCCCCCCcccEEEEEECCHHHHHH
Confidence 4567888887774 3443 12222 2222233556677766 777776654
No 115
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.43 E-value=36 Score=22.28 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=32.6
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770 27 DVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 87 (134)
-|-.- ....+.+||++.++. |+.-+.++.++.+- .+.+.|||.| |.+.+.|.+.
T Consensus 19 ~V~nL-p~~~t~~~l~~~F~~-~g~v~~~v~i~~d~-----~g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 19 HITNI-PFSITKMDVLQFLEG-IPVDENAVHVLVDN-----NGQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp EEESC-CTTSCHHHHHHHTTT-SCCCSTTEEECCCT-----TSSCSSCEEEECSSHHHHHHH
T ss_pred EEeCc-CCcCCHHHHHHHHHh-CCCcCCeEEEEECC-----CCCcceEEEEEECCHHHHHHH
Confidence 34443 356788899888855 56612445554432 3567788877 6777766553
No 116
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=33.41 E-value=92 Score=19.69 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++ ...-.+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~g~~~g~afV~f~~~~~A~~ 72 (111)
T 1x4h_A 25 FDSEEEALGEVLQ-QFGD-LKYVRVV----LHPDTEHSKGCAFAQFMTQEAAQK 72 (111)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEECC----BCSSSCCBCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEE----ecCCCCCCccEEEEEECCHHHHHH
Confidence 4578889988885 4553 1222222 22234566777776 667666543
No 117
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=33.34 E-value=19 Score=22.06 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=23.5
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 37 SKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 37 sr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
+.++|++.++ .||. -..|.+. . ..|.+.|||.| |+|.+.|.+
T Consensus 20 t~~~l~~~F~-~~G~--i~~v~i~---~--~~g~~~g~afV~f~~~~~A~~ 62 (81)
T 2krb_A 20 LKNVIHKIFS-KFGK--ITNDFYP---E--EDGKTKGYIFLEYASPAHAVD 62 (81)
T ss_dssp HHHHHHHHHH-TTCC--EEEEECC---C--BTTBCCCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHh-hcCC--eEEEEec---C--CCCcEeEEEEEEECCHHHHHH
Confidence 3466766664 4554 1222222 2 34577888877 777776653
No 118
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=33.13 E-value=50 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 36 VSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.++.+....|++.||+ +++.++++|
T Consensus 196 ~~K~~~l~~l~~~lgi-~~~~~i~~G 220 (279)
T 4dw8_A 196 IDKALSLSVLLENIGM-TREEVIAIG 220 (279)
T ss_dssp CCHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 6899999999999999 776666654
No 119
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.89 E-value=22 Score=23.36 Aligned_cols=49 Identities=8% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. = ..+++..-.|. ..|.+.|||.| |++.+.|.+
T Consensus 18 ~~~te~~L~~~F~-~~G~-i-~~~~~~~~~~~-~~g~~~G~aFV~f~~~~~a~~ 67 (114)
T 2dnl_A 18 PDIDEDEITASFR-RFGP-L-VVDWPHKAESK-SYFPPKGYAFLLFQEESSVQA 67 (114)
T ss_dssp TTCCHHHHHHHTT-TTCC-C-CEECTTSSSSC-CCSCTTSEEEECCSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-E-EEEEeecCCCC-CCCCcccEEEEEECCHHHHHH
Confidence 5677888888774 4554 1 23333222221 12678889988 888887654
No 120
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.88 E-value=57 Score=21.18 Aligned_cols=45 Identities=16% Similarity=0.411 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++.+ -| .+.|||.| |++.+.|.+
T Consensus 39 ~~~te~~l~~~F~-~~G~-i~~v~i~~~----~~--~~kg~afV~f~~~~~A~~ 84 (109)
T 2err_A 39 FRFRDPDLRQMFG-QFGK-ILDVEIIFN----ER--GSKGFGFVTFENSADADR 84 (109)
T ss_dssp TTCCHHHHHHHGG-GTCC-CSCEEECCB----TT--BCTTEEEEECCCSHHHHH
T ss_pred CcCCHHHHHHHHH-hcCC-EEEEEEEEC----CC--CCceEEEEEECCHHHHHH
Confidence 4578889988774 5564 244444433 12 36677776 666655543
No 121
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=32.39 E-value=67 Score=23.11 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
|-|... ....+.++|++.++. ||. =.++.++.+- .+.+.|||.| |++.+.|.+
T Consensus 91 l~V~nL-p~~~te~~L~~~F~~-~G~-I~~v~i~~d~-----~g~~kG~afV~F~~~~~A~~ 144 (177)
T 2f3j_A 91 LLVSNL-DFGVSDADIQELFAE-FGT-LKKAAVDYDR-----SGRSLGTADVHFERRADALK 144 (177)
T ss_dssp EEEECC-CSCCCHHHHHHHHHH-TSC-CSEEEECCCT-----TSSCSCCEEEEESCHHHHHH
T ss_pred EEEeCC-CCCCCHHHHHHHHHh-cCC-eEEEEEEECC-----CCCEeeEEEEEeCCHHHHHH
Confidence 334443 356788999998865 554 2333333322 3566777766 677766653
No 122
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=32.32 E-value=88 Score=19.16 Aligned_cols=46 Identities=22% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++. ... +.+.|||.| |.+.+.|.+
T Consensus 26 ~~~~~~~l~~~F~~-~G~-i~~v~i~~----~~~-g~~~g~afV~f~~~~~a~~ 72 (95)
T 2ywk_A 26 ARVREEILYELFLQ-AGP-LTKVTICK----DRE-GKPKSFGFVCFKHPESVSY 72 (95)
T ss_dssp TTCCHHHHHHHHGG-GSC-EEEEEEEE----CTT-SCEEEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEEE----CCC-CCCceEEEEEECCHHHHHH
Confidence 45678898888854 554 12222222 222 678888877 666666654
No 123
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=32.20 E-value=53 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 36 VSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.++....+.|++.||+ +++.++.+|
T Consensus 210 ~~K~~~l~~l~~~lgi-~~~e~ia~G 234 (283)
T 3dao_A 210 VSKWTALSYLIDRFDL-LPDEVCCFG 234 (283)
T ss_dssp CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred CcHHHHHHHHHHHhCC-CHHHEEEEC
Confidence 6899999999999999 776666654
No 124
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=32.16 E-value=52 Score=24.53 Aligned_cols=32 Identities=28% Similarity=0.428 Sum_probs=23.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
++|.++| .++....+.|++.||+ +++.++.+|
T Consensus 201 ~ei~~~~---~~K~~al~~l~~~lgi-~~~~~ia~G 232 (285)
T 3pgv_A 201 LEVMAGG---VSKGHALEAVAKMLGY-TLSDCIAFG 232 (285)
T ss_dssp EEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred EEEecCC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 4455443 6788999999999999 777666654
No 125
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=31.96 E-value=90 Score=21.27 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=27.8
Q ss_pred CCCccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCe
Q 032770 1 MADKAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANA 56 (134)
Q Consensus 1 m~~~~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~ 56 (134)
|++ .|+|.+..- .++ ..+++..+ ++-+-.+|+++|+...|+ +++.
T Consensus 3 m~~-~v~l~V~~~-~~~------~~~e~~v~--~~~TV~~lK~ki~~~~Gi-p~~~ 47 (122)
T 1t0y_A 3 MTE-VYDLEITTN-ATD------FPMEKKYP--AGMSLNDLKKKLELVVGT-TVDS 47 (122)
T ss_dssp CCC-EEEEEEEES-SCC------SCEEEEEE--TTSBHHHHHHHHHHHHCC-CTTT
T ss_pred CCC-EEEEEEEEC-CCC------ccEEEEeC--CCCcHHHHHHHHHHHhCC-CHHH
Confidence 555 577766652 122 12233333 455678999999999999 5544
No 126
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=31.82 E-value=1.2e+02 Score=20.44 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=32.4
Q ss_pred eeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEecee
Q 032770 12 KFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFR 63 (134)
Q Consensus 12 k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~ 63 (134)
.+....|+...+++|.|.- ..++.||++.+-++|++ ++.=|..+.
T Consensus 12 TEKa~~~~e~n~~~F~V~~----~AnK~qIK~aVe~lf~V---kV~~VnT~~ 56 (92)
T 3tve_T 12 SEKAYAGFAEGKYTFWVHP----KATKTEIKNAVETAFKV---KVVKVNTLH 56 (92)
T ss_dssp SHHHHTTTTTTEEEEEECT----TCCHHHHHHHHHHHTTC---CEEEEEEEE
T ss_pred CHHHHHHhhCCEEEEEECC----CCCHHHHHHHHHHHhCC---ceeeeeeee
Confidence 3444556777888988754 36799999999999999 444444444
No 127
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=31.65 E-value=87 Score=18.88 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++ .....+.+.|||.| |.|.+.+.+
T Consensus 16 ~~~t~~~l~~~F~-~~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~ 63 (89)
T 3ucg_A 16 YGATAEELEAHFH-GCGS-VNRVTIL----CDKFSGHPKGFAYIEFSDKESVRT 63 (89)
T ss_dssp TTCCHHHHHHHHG-GGCC-EEEEEEE----ESCSSSSCCEEEEEEESSTHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EEEEEEE----ecCCCCCcceEEEEEECCHHHHHH
Confidence 4568889998885 4554 1233232 33234566677766 666665544
No 128
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.64 E-value=90 Score=20.10 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCC
Q 032770 34 ANVSKAELKEKLARMYDVRDAN 55 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~ 55 (134)
++-+-.+|+++|+...|+ +++
T Consensus 27 ~~~TV~~lK~ki~~~~gi-p~~ 47 (95)
T 1v6e_A 27 RSLTIAEFKCKLELVVGS-PAS 47 (95)
T ss_dssp TTSBHHHHHHHHHHHTCS-CTT
T ss_pred ccCHHHHHHHHHHHHHCC-CHH
Confidence 445678999999999999 444
No 129
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A
Probab=31.40 E-value=53 Score=24.36 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 36 VSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.++.+.-..|++.+++ +++.++++|
T Consensus 190 ~~K~~~~~~l~~~l~i-~~~~~~~~G 214 (271)
T 1rlm_A 190 LHKANGISRLLKRWDL-SPQNVVAIG 214 (271)
T ss_dssp CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 5788999999999999 666555554
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=31.38 E-value=74 Score=19.91 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++-++ .+.|||.| |+|.+.+..
T Consensus 37 ~~~~~~~l~~~f~~-~G~-i~~~~~~----------~~~g~afV~f~~~~~A~~ 78 (101)
T 2la4_A 37 HFATEADLIPLFQN-FGF-ILDFKHY----------PEKGCCFIKYDTHEQAAV 78 (101)
T ss_dssp TTCCHHHHHHHHHT-TSC-CSEEEEE----------TTTTEEEEECSSHHHHHH
T ss_pred cccCHHHHHHHHHh-CCC-EEEEEEe----------cCCCEEEEEECCHHHHHH
Confidence 46678888887754 554 2233222 24567776 677766543
No 131
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=31.37 E-value=1.6e+02 Score=21.91 Aligned_cols=54 Identities=22% Similarity=0.269 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCC-CCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVR-DANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~-~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
|-|-.- ....+..+|++.+ ..|++. =.++.|+ +.--.+.+.|||.| |++.+.|.
T Consensus 71 lfVgnL-~~~~te~~L~~~F-~~~G~~~v~~v~i~----~d~~tg~skGfaFV~f~~~~~a~ 126 (229)
T 3q2s_C 71 LYIGNL-TWWTTDEDLTEAV-HSLGVNDILEIKFF----ENRANGQSKGFALVGVGSEASSK 126 (229)
T ss_dssp EEEESC-CTTCCHHHHHHHH-HTTTCCCEEEEEEE----ECTTTCCEEEEEEEEESCTTHHH
T ss_pred EEEeCC-CCCCCHHHHHHHH-HHHCCcceEEEEEE----ecCCCCccceEEEEEECCHHHHH
Confidence 334443 3567888999888 566630 1222222 23235677888887 66655443
No 132
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=31.24 E-value=1.1e+02 Score=19.82 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 87 (134)
...+..+|++.+ ..||. |.-..+...-..|.+.|||.| |.|.+.|.+.
T Consensus 36 ~~~te~~l~~~F-~~~G~-----i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A 84 (108)
T 2jrs_A 36 FNITEDMLRGIF-EPFGR-----IESIQLMMDSETGRSKGYGFITFSDSECAKKA 84 (108)
T ss_dssp SSCCHHHHHHHH-TTTSC-----EEEEEEEEETTTTEEEEEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-----eEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 457788888877 44554 222223333456788999987 7888877653
No 133
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.23 E-value=53 Score=20.62 Aligned_cols=44 Identities=32% Similarity=0.490 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. . .++.++..- ..+.+.|||.| |.|.+.|.+
T Consensus 25 ~~~t~~~l~~~F~~---~--~~~~~~~~~----~~~~~~g~afV~f~~~~~A~~ 69 (102)
T 2fc8_A 25 EDTTEETLKESFDG---S--VRARIVTDR----ETGSSKGFGFVDFNSEEDAKA 69 (102)
T ss_dssp TTCCHHHHHHTSTT---C--SEEEEEECS----SSCSEEEEEEEECSSHHHHHH
T ss_pred CccCHHHHHHHhcC---C--eEEEEEecC----CCCCcCcEEEEEECCHHHHHH
Confidence 45678888877752 2 233333332 34678888888 778777654
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=31.22 E-value=1e+02 Score=19.71 Aligned_cols=36 Identities=19% Similarity=0.450 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 36 VSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
.+.++|++.++ .|+. ...|.+ +.|||.| |++.+.|.
T Consensus 40 ~t~~~l~~~F~-~~G~--v~~v~i-----------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 40 VKKSDVETIFS-KYGR--VAGCSV-----------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCHHHHHHHHG-GGSC--CSEEEE-----------ETTEEEEECSSSHHHH
T ss_pred CCHHHHHHHHH-hCCC--eEEEEE-----------eCCEEEEEECCHHHHH
Confidence 67889988885 4664 234444 4567766 55655544
No 135
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=30.94 E-value=1.6e+02 Score=21.76 Aligned_cols=57 Identities=23% Similarity=0.335 Sum_probs=40.3
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE---eCCHHHHHhc
Q 032770 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI---YDSVESAKKF 87 (134)
Q Consensus 22 rEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I---Yds~e~~kk~ 87 (134)
.+++|.|.-. -++.||++.+-.+|++ ++.=|..+... +|.=.+|+.. ||.+|.|.++
T Consensus 88 N~~vF~Vd~k----AnK~qIK~AVEklf~V---kV~kVNTl~~p--~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNR----STKPQIKSAFEKLYNV---KVRSVNTLNTI--TGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTT----CCHHHHHHHHHHHHCC---CEEEEEEEECT--TSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCC----CCHHHHHHHHHHHhCC---ceeEEEeeEcC--CCcEEEEEEcCCCCcHHHHHHhh
Confidence 5778877543 6799999999999999 66667766664 3455566665 6666666543
No 136
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=30.36 E-value=1.2e+02 Score=19.95 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 37 SKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 37 sr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...||++.. ..||. =.++.++.. .-..+.+.|||.| |.|.+.|.
T Consensus 26 ~~~dl~~~f-~~~G~-V~~v~i~~~---~~~~~~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 26 LEVETKEEC-EKYGK-VGKCVIFEI---PGAPDDEAVRIFLEFERVESAI 70 (105)
T ss_dssp CHHHHHHHG-GGGSC-EEEEEEEEC---SSCCTTTSEEEEEEESSHHHHH
T ss_pred HHHHHHHHH-HhcCC-EEEEEEecC---CCCCCCCcEEEEEEECCHHHHH
Confidence 467888777 57776 344444332 2223567788877 77877664
No 137
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.97 E-value=38 Score=20.85 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++.++ .||. =.++.++.. +.|||.| |+|.+.|.+.
T Consensus 15 ~~~te~~l~~~F~-~~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 15 GDMTEDELREFFS-QYGD-VMDVFIPKP---------FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SSSCHHHHHHHST-TTSC-CCEEECCSS---------CCSCCEEECSCHHHHHHT
T ss_pred CCCCHHHHHHHHH-HcCC-eeEEEEecC---------CCCEEEEEECCHHHHHHH
Confidence 4567888888774 4554 233333321 6788877 8899988753
No 138
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=29.69 E-value=44 Score=19.46 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCC-H----HHHHHHHHhHcCCCCCCeEEE
Q 032770 26 IDVLHPGRANVS-K----AELKEKLARMYDVRDANAIFV 59 (134)
Q Consensus 26 ~~v~H~g~~Tps-r----~eI~~kLA~~~~~~~~~~IvV 59 (134)
+.|...++-|+. + ++|-+.|++.+|. +++.|+|
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~-~~~~v~V 41 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGE-PYEEVRV 41 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTC-CGGGEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCC-CcccEEE
Confidence 344444345554 2 2556677788999 6665554
No 139
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=29.41 E-value=1.1e+02 Score=20.16 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHhHc--CCCCCCe
Q 032770 36 VSKAELKEKLARMY--DVRDANA 56 (134)
Q Consensus 36 psr~eI~~kLA~~~--~~~~~~~ 56 (134)
-+-.+++++|+... ++ +++.
T Consensus 45 ~TV~~LK~~i~~~~~~gi-p~~~ 66 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESV-PDPE 66 (107)
T ss_dssp CBHHHHHHHHHHHCTTTC-CCSS
T ss_pred CCHHHHHHHHHHHhccCC-Chhh
Confidence 55789999999999 99 5444
No 140
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=29.37 E-value=98 Score=21.46 Aligned_cols=40 Identities=20% Similarity=0.347 Sum_probs=32.6
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceee
Q 032770 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRT 64 (134)
Q Consensus 22 rEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T 64 (134)
|-+++||+-| --||--|+...||..-|+ +.=+|-|..+.-
T Consensus 7 rRlVLDVlKP--h~p~i~d~A~~l~~~~gV-~gVnItv~EvD~ 46 (97)
T 2raq_A 7 IRIVLDILKP--HEPIIPEYAKYLSELRGV-EGVNITLMEIDK 46 (97)
T ss_dssp EEEEEEEECC--SCSCHHHHHHHHHHSTTC-CEEEEEEEEECS
T ss_pred eEEEEEecCC--CCCCHHHHHHHHHhCCCc-ceEEEEEEEeec
Confidence 4489999977 669999999999999999 766676665543
No 141
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=29.33 E-value=1.7e+02 Score=21.61 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=42.1
Q ss_pred cCccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE---eCCHHHHHh
Q 032770 17 RLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI---YDSVESAKK 86 (134)
Q Consensus 17 ~LL~R-rEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I---Yds~e~~kk 86 (134)
.|+.. .+++|.|.-. -++.||++.+-.+|++ ++.=|..+... .|.=.+|+.. ||.+|.+.+
T Consensus 84 ~~~E~~N~~vF~Vd~~----AnK~qIK~AVEklf~V---kV~kVNTl~~~--~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 84 KKIEDNNTLVFIVDLK----ADKKKIKAAVKKMYDI---QAKKVNTLIRP--DGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp HHHHHHSEEEEEECSS----CCSHHHHHHHHHHHTC---CEEEEEEEECT--TSSEEEEEEECTTSCHHHHHGG
T ss_pred HHHHhCCEEEEEEcCC----CCHHHHHHHHHHHhCC---cceEEEeeEcC--CCceEEEEEcCCCCcHHHHHHh
Confidence 34443 5788877543 6799999999999999 66667777654 4555566666 566666544
No 142
>2okr_C MAP kinase-activated protein kinase 2; NLS, NES, heterodimer, docking groove, transferase; 2.00A {Homo sapiens}
Probab=29.30 E-value=2.3 Score=23.08 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=10.7
Q ss_pred EEeeeeeeccCccce
Q 032770 8 IRTRKFMTNRLLSRK 22 (134)
Q Consensus 8 i~~~k~~~N~LL~Rr 22 (134)
|+..+.-+||||++|
T Consensus 3 iK~L~~snNpLL~kR 17 (26)
T 2okr_C 3 IKKIEDASNPLLLKR 17 (26)
T ss_dssp CCCTTTCCCHHHHHH
T ss_pred ccccccccCHHHHHH
Confidence 445566789999865
No 143
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*
Probab=29.30 E-value=64 Score=23.75 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=24.9
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.++|.++| .++......|++.+++ +++.++.+|
T Consensus 153 ~lei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~~G 185 (244)
T 1s2o_A 153 DVDLLPQR---SNKGNATQYLQQHLAM-EPSQTLVCG 185 (244)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred eEEeccCC---CChHHHHHHHHHHhCC-CHHHEEEEC
Confidence 35666654 6788999999999999 766666654
No 144
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=28.99 E-value=1.7e+02 Score=21.40 Aligned_cols=60 Identities=18% Similarity=0.376 Sum_probs=41.3
Q ss_pred Cccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE---eCCHHHHHh
Q 032770 18 LLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI---YDSVESAKK 86 (134)
Q Consensus 18 LL~R-rEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I---Yds~e~~kk 86 (134)
|+.. .+++|.|.-. -++.||++.+-++|++ ++.=|..+... +|.=.+|+.. ||.+|.|.+
T Consensus 75 ~~E~~N~~vF~Vd~~----AnK~qIK~AVEklf~V---kV~kVNTl~~~--~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 75 KVEDGNILVFQVSMK----ANKYQIKKAVKELYEV---DVLKVNTLVRP--NGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp HHHHHCEEEEEECTT----CCHHHHHHHHHHHHSC---CEEEEEEEECT--TSCEEEEEEECTTCCHHHHHHH
T ss_pred HHHhCCEEEEEEcCC----CCHHHHHHHHHHHhCC---ceeEEEeeEcC--CCceEEEEEeCCCCcHHHHHHh
Confidence 4443 5788887543 5699999999999999 66666666654 3555666666 555665544
No 145
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.65 E-value=26 Score=22.11 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 35 NVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
..+.++|++.+ ..|+. -..|.| +.+.|||.| |++.+.|.+
T Consensus 24 ~~t~~~l~~~F-~~~G~--i~~v~i---------~~~~g~afV~f~~~~~a~~ 64 (97)
T 1x5p_A 24 DMTPTLLRGAF-SPFGN--IIDLSM---------DPPRNCAFVTYEKMESADQ 64 (97)
T ss_dssp SCCHHHHHHHH-TTTSC--EEEEEE---------ETTTTEEEEEESSHHHHHH
T ss_pred CCCHHHHHHHH-hhCCC--EEEEEe---------cCCCCEEEEEECCHHHHHH
Confidence 67788888877 44554 122333 134556665 666665544
No 146
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=28.61 E-value=41 Score=22.68 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 35 NVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
..+.++|++.+ ..||. =.++.++ .+.|||.| |++.+.|.+
T Consensus 48 ~~te~~L~~~F-~~~G~-I~~v~i~----------~~kg~aFV~f~~~~~A~~ 88 (121)
T 2bz2_A 48 DMTPTLLRGAF-SPFGN-IIDLSMD----------PPRNCAFVTYEKMESADQ 88 (121)
T ss_dssp SCCHHHHHHHH-STTCC-CSCEEEE----------TTTTEEEEECSSHHHHHH
T ss_pred CCCHHHHHHHH-HccCC-EEEEEEe----------CCCCEEEEEECCHHHHHH
Confidence 56788888777 45554 2343332 34567766 777765543
No 147
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Probab=28.26 E-value=47 Score=24.38 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 27 DVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 27 ~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
+|.++| .++.+.-..|++.+++ +++.++++|
T Consensus 180 ei~~~~---~~K~~~~~~~~~~~~~-~~~~~~~iG 210 (261)
T 2rbk_A 180 DVTAKG---DTKQKGIDEIIRHFGI-KLEETMSFG 210 (261)
T ss_dssp EEESTT---CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EecCCC---CChHHHHHHHHHHcCC-CHHHEEEEC
Confidence 455543 5788889999999999 766655554
No 148
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=28.19 E-value=49 Score=24.97 Aligned_cols=26 Identities=12% Similarity=0.186 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~ 60 (134)
+.+.-.++++.||+.+++ +++.|++.
T Consensus 59 ~~~~~~~l~~~la~~~~~-~~~~i~~~ 84 (361)
T 3ftb_A 59 PDVNYRRLNKSIENYLKL-KDIGIVLG 84 (361)
T ss_dssp CCTTCHHHHHHHHHHHTC-CSCEEEEE
T ss_pred CCccHHHHHHHHHHHhCC-CcceEEEc
Confidence 345568999999999999 88877764
No 149
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=27.99 E-value=1.1e+02 Score=19.46 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=14.2
Q ss_pred CCCEEEEEEEE-eCCHHHHHh
Q 032770 67 GGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 67 G~~~s~g~a~I-Yds~e~~kk 86 (134)
..|.+.|||.| |.+.+.|.+
T Consensus 49 ~tg~~kG~afV~f~~~~~A~~ 69 (100)
T 3ns6_A 49 ATGKTKGFLFVECGSMNDAKK 69 (100)
T ss_dssp TTTEECSEEEEEESSHHHHHH
T ss_pred CCCccceEEEEEECCHHHHHH
Confidence 44788899987 777666543
No 150
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=27.83 E-value=74 Score=23.26 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.++|.++| .++.+....|++.++. +++.++.+|
T Consensus 144 ~~ei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~iG 176 (227)
T 1l6r_A 144 SWHLMNRG---EDKAFAVNKLKEMYSL-EYDEILVIG 176 (227)
T ss_dssp EEEEEETT---CSHHHHHHHHHHHTTC-CGGGEEEEC
T ss_pred EEEEecCC---CCHHHHHHHHHHHhCc-CHHHEEEEC
Confidence 35666654 6888999999999999 766665554
No 151
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=27.54 E-value=1e+02 Score=18.30 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.+ ..||. =.++. +......+.+.|||.| |.|.+.|..
T Consensus 11 ~~~t~~~l~~~f-~~~G~-i~~~~----i~~~~~~~~~~g~afV~f~~~~~a~~ 58 (83)
T 3md1_A 11 VNVDDETLRNAF-KDFPS-YLSGH----VMWDMQTGSSRGYGFVSFTSQDDAQN 58 (83)
T ss_dssp TTCCHHHHHHHH-TTSTT-EEEEE----EEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-eeEEE----EEEcCCCCCccceEEEEECCHHHHHH
Confidence 456778888877 44554 12222 2333345678888876 777777654
No 152
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=27.52 E-value=37 Score=25.72 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 36 VSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
|.-.++++.||+.+++ +++.|++.+
T Consensus 50 ~~~~~lr~~la~~~~~-~~~~i~~t~ 74 (350)
T 3fkd_A 50 PDAGTLRQMLAKRNSV-DNNAILVTN 74 (350)
T ss_dssp TTCHHHHHHHHHHTTC-CGGGEEEES
T ss_pred CcHHHHHHHHHHHhCc-CHHHEEEcC
Confidence 3447999999999999 777777643
No 153
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.43 E-value=1.1e+02 Score=19.50 Aligned_cols=41 Identities=10% Similarity=0.303 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. ||. =.++.++.+ .|||.| |+|.+.|..
T Consensus 35 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~----------~g~afV~f~~~~~a~~ 76 (109)
T 1x4g_A 35 SGLTDQLMRQTFSP-FGQ-IMEIRVFPE----------KGYSFVRFSTHESAAH 76 (109)
T ss_dssp SCCCHHHHHHHHHH-HSC-EEEEEEETT----------TTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEeCC----------CCEEEEEECCHHHHHH
Confidence 46788999988864 564 223333332 466666 777776543
No 154
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=27.40 E-value=66 Score=24.09 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=24.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
++|.++| .++......|++.+++ +++.++++|
T Consensus 190 lei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~~G 221 (282)
T 1rkq_A 190 LEILDKR---VNKGTGVKSLADVLGI-KPEEIMAIG 221 (282)
T ss_dssp EEEEETT---CSHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred EEecCCC---CCCHHHHHHHHHHhCC-CHHHEEEEC
Confidence 5666654 6788999999999999 766665554
No 155
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=26.99 E-value=34 Score=25.61 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~ 60 (134)
+.|.-.++++.||+.+++ +++.|++.
T Consensus 49 ~~~~~~~lr~~la~~~~~-~~~~i~~t 74 (337)
T 3p1t_A 49 PFDAEPRVMRKLAEHFSC-PEDNLMLV 74 (337)
T ss_dssp CTTHHHHHHHHHHHHHTS-CGGGEEEE
T ss_pred CCCchHHHHHHHHHHhCc-CHHHEEEe
Confidence 456678999999999999 77666554
No 156
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=26.76 E-value=1.6e+02 Score=20.42 Aligned_cols=47 Identities=21% Similarity=0.460 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.+||++.++ .||. =.++.++ ..-..|.+.|||.| |+|.+.|.+
T Consensus 135 ~~~t~~~l~~~f~-~~G~-v~~v~i~----~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 135 QDLSDDDIKSVFE-AFGK-IKSATLA----RDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp TTCCHHHHHHHHT-TSSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CcCCHHHHHHHHh-ccCC-eeEEEEE----ecCCCCCcCceEEEEecCHHHHHH
Confidence 4567788887774 4554 1233332 22235677888877 677766543
No 157
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=26.64 E-value=56 Score=21.04 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+..+|++.++ .||. =.++.++. + |.. .|||.| |.|.+.|.
T Consensus 18 ~~~t~~~l~~~F~-~~G~-v~~v~i~~---~--~~~--~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 18 YKITAEEMYDIFG-KYGP-IRQIRVGN---T--PET--RGTAYVVYEDIFDAK 61 (115)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEEEC---S--TTT--TTCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEee---C--CCC--CcEEEEEECCHHHHH
Confidence 5678889998885 4554 23333332 1 333 555555 56665543
No 158
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=26.41 E-value=1e+02 Score=19.69 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=22.3
Q ss_pred CHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 37 SKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 37 sr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
+..+|++.+ ..||. ...|.|. . ..|.+.|||.| |.|.+.|.
T Consensus 34 t~~~l~~~F-~~~G~--v~~v~i~---~--~~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 34 LKNVIHKIF-SKFGK--ITNDFYP---E--EDGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp HHHHHHHHH-GGGSC--EEEEECC---C--BTTBSCCEEEEEECSSSHHH
T ss_pred HHHHHHHHH-hcCCC--EEEEEee---C--CCCCeeeEEEEEECCHHHHH
Confidence 456777666 44564 1222222 1 34577788877 66655443
No 159
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=26.32 E-value=75 Score=23.95 Aligned_cols=25 Identities=12% Similarity=0.322 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 36 VSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 36 psr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
.++......|++.+|+ +++.++++|
T Consensus 227 ~~K~~al~~l~~~lgi-~~~e~i~~G 251 (304)
T 3l7y_A 227 LHKGWALQQLLKRWNF-TSDHLMAFG 251 (304)
T ss_dssp CSHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred CCHHHHHHHHHHHhCc-CHHHEEEEC
Confidence 5788999999999999 776666654
No 160
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.15 E-value=84 Score=18.83 Aligned_cols=41 Identities=10% Similarity=0.235 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++. +.|||.| |+|.+.|..
T Consensus 22 ~~~t~~~l~~~f~-~~G~-i~~~~~~~----------~kg~afV~f~~~~~A~~ 63 (85)
T 2ytc_A 22 DTITETDLRNHFY-QFGE-IRTITVVQ----------RQQCAFIQFATRQAAEV 63 (85)
T ss_dssp TTSCHHHHHHHHH-TTSC-EEEEEEEG----------GGTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCCC-EeEEEEEC----------CCCEEEEEECCHHHHHH
Confidence 4678889988885 4554 12333332 2467766 777776644
No 161
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=26.12 E-value=1.1e+02 Score=18.22 Aligned_cols=47 Identities=15% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++ .||. =.++ .+......+.+.|||.| |+|.+.|.+
T Consensus 17 ~~~~~~~l~~~f~-~~G~-i~~v----~i~~~~~~~~~~g~afV~f~~~~~a~~ 64 (85)
T 3mdf_A 17 EEVDDKVLHAAFI-PFGD-ITDI----QIPLDYETEKHRGFAFVEFELAEDAAA 64 (85)
T ss_dssp TTCCHHHHHHHHG-GGSC-EEEE----ECCEETTTTEECSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHh-ccCC-EEEE----EEEECCCCCccccEEEEEECCHHHHHH
Confidence 4567888888774 4554 1122 22233345678888875 777777654
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=25.71 E-value=47 Score=22.30 Aligned_cols=47 Identities=26% Similarity=0.535 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++.+- ..|.+.|||.| |+|.+.|.+
T Consensus 97 ~~~t~~~l~~~F~-~~G~-i~~~~i~~~~----~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 97 PDVRPKEFEEFFS-QWGT-IIDAQLMLDK----DTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp TTCCHHHHHHHHH-TTSC-CSEEECCCSS----SSSTTSEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hCcc-EEEEEEEEcC----CCCccceEEEEEECCHHHHHH
Confidence 4577889998886 4554 2333333221 23556666665 677777654
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=25.52 E-value=1.5e+02 Score=19.71 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+.++|++.++ .||. =.++.+ ...-..|.+.|||.| |+|.+.|.
T Consensus 104 ~~~t~~~l~~~f~-~~G~-v~~v~i----~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 104 NYLNDDQVKELLT-SFGP-LKAFNL----VKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp TTCCHHHHHHHHH-TTSC-EEEEEE----EECTTTCSEEEEEEEEESSTTHHH
T ss_pred CcCCHHHHHHHHH-hcCC-ceEEEE----EecCCCCCcceEEEEEeCCHHHHH
Confidence 3567888988886 4554 122222 223235667788876 66666554
No 164
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=25.43 E-value=1.4e+02 Score=19.28 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHhc
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++.++. ||. =.++.++ ..-..+.+.|||.| |.|.+.+.+.
T Consensus 46 ~~~t~~~l~~~F~~-~G~-i~~v~i~----~~~~~~~~~g~afV~f~~~~~a~~A 94 (124)
T 2jwn_A 46 YGSTAQDLEAHFSS-CGS-INRITIL----CDKFSGHPKGYAYIEFAERNSVDAA 94 (124)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE----EECTTSSCEEEEEEEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-EEEEEEE----ecCCCCCcccEEEEEECCHHHHHHH
Confidence 34678899888854 453 1222222 22245667788876 7777766543
No 165
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=25.32 E-value=1.2e+02 Score=20.46 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=28.4
Q ss_pred eeeeccCccc-eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCC
Q 032770 12 KFMTNRLLSR-KQFVIDVLHPGRANVSKAELKEKLARMYDVRDAN 55 (134)
Q Consensus 12 k~~~N~LL~R-rEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~ 55 (134)
.+....|+.. .+++|.|.- ..++.||++.+-++|++ +..
T Consensus 17 TEKa~~~~e~~n~~~F~V~~----~AnK~eIK~AVE~lf~V-kV~ 56 (93)
T 3r8s_T 17 SEKASTAMEKSNTIVLKVAK----DATKAEIKAAVQKLFEV-EVE 56 (93)
T ss_dssp SHHHHHHHHTTSEEEEEECS----SCCHHHHHHHHHHHSCC-CCC
T ss_pred CHHHHHHHHhCCEEEEEECC----CCCHHHHHHHHHHHcCC-ceE
Confidence 3334455555 688888754 36799999999999999 543
No 166
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=25.20 E-value=1.3e+02 Score=18.83 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=23.6
Q ss_pred eEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032770 22 KQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 22 rEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~ 60 (134)
+.+.++|. ++-+-.+++++|++..+++..++-+++
T Consensus 15 ~~~~~~v~----~~~TV~~LK~~I~~~~gip~~~qrL~~ 49 (88)
T 2hj8_A 15 RSSTYEVR----LTQTVAHLKQQVSGLEGVQDDLFWLTF 49 (88)
T ss_dssp CEEEEEEE----SSSBHHHHHHHHHHHTCSCTTTEEEES
T ss_pred CEEEEEEC----CCCcHHHHHHHHHHHhCCChhHEEEEE
Confidence 34555554 345679999999999999444444443
No 167
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=25.17 E-value=54 Score=21.55 Aligned_cols=47 Identities=17% Similarity=0.077 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
.+-|-.. ....+.++|++.++ .|+. =.++.++.+ |||.| |++.+.|.
T Consensus 18 ~l~V~nL-p~~~t~~~l~~~F~-~~G~-v~~~~i~~~-----------g~afV~f~~~~~a~ 65 (115)
T 3beg_B 18 RVVVSGL-PPSGSWQDLKDHMR-EAGD-VCYADVYRD-----------GTGVVEFVRKEDMT 65 (115)
T ss_dssp CEEEEEC-CSSCCTTHHHHHHG-GGSC-EEEEEECTT-----------SEEEEEESSHHHHH
T ss_pred EEEEeCC-CCCCCHHHHHHHHH-hcCC-eEEEEEecC-----------CEEEEEECCHHHHH
Confidence 3334443 25567888888774 4553 122222222 67766 66666554
No 168
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=25.00 E-value=55 Score=24.36 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=26.7
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 28 VLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
..-| +-.|-+.++++.||+.+++ +++.|-|.-
T Consensus 100 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKA 131 (152)
T 1iv3_A 100 LDRP-KLGPHRKALVDSLSRLMRL-PQDRIGLTF 131 (152)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred ecCC-cCHHHHHHHHHHHHHHhCC-CCceEEEEE
Confidence 3344 5689999999999999999 999988764
No 169
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=24.89 E-value=59 Score=24.39 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=27.1
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEece
Q 032770 28 VLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~ 62 (134)
..-| +-.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 102 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKAt 134 (159)
T 1t0a_A 102 AQAP-KMAPHIEDMRQVLAADLNA-DVADINVKAT 134 (159)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred cCCC-cChHHHHHHHHHHHHHhCC-CCceEEEEEe
Confidence 3344 5689999999999999999 9999888643
No 170
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=24.82 E-value=1.3e+02 Score=20.19 Aligned_cols=23 Identities=17% Similarity=0.109 Sum_probs=9.8
Q ss_pred ccEEEEeeeeeeccCccceEEEE
Q 032770 4 KAITIRTRKFMTNRLLSRKQFVI 26 (134)
Q Consensus 4 ~~v~i~~~k~~~N~LL~RrEi~~ 26 (134)
+.|+|+....-.=|.|+++-+.+
T Consensus 7 ~Kv~vrfk~~g~~P~l~k~KflV 29 (91)
T 3w1s_C 7 QKIQIKFQPIGSIGQLKPSVCKI 29 (91)
T ss_dssp CEEEEEEEECCC-------EEEE
T ss_pred CeEEEEEEecCCCCcccccEEEc
Confidence 35777776666667776665443
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=24.82 E-value=1.5e+02 Score=19.43 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. ||. =.++.++ ..-..|.+.|||.| |.|.+.|..
T Consensus 12 ~~~~~~~l~~~f~~-~G~-i~~v~~~----~~~~~~~~~g~afV~f~~~~~A~~ 59 (167)
T 1fxl_A 12 QNMTQEEFRSLFGS-IGE-IESCKLV----RDKITGQSLGYGFVNYIDPKDAEK 59 (167)
T ss_dssp TTCCHHHHHHHHHT-TSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-eEEEEEE----eCCCCCcceeEEEEEECCHHHHHH
Confidence 45678899888754 553 1233222 23335678888887 777777654
No 172
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=24.70 E-value=1.6e+02 Score=19.52 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.+. .||. =.++. +...--.+.+.|||.| |+|.+.|.+
T Consensus 99 ~~~t~~~l~~~f~-~~G~-i~~~~----i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 99 RTITDDQLDTIFG-KYGS-IVQKN----ILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp TTCCHHHHHHHHT-SSSC-EEEEE----EEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHhhh-cCCc-EEEEE----EEEcCCCCCcceEEEEEECCHHHHHH
Confidence 4567788887774 4443 11222 2222234667888887 778777654
No 173
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=24.70 E-value=59 Score=24.38 Aligned_cols=33 Identities=9% Similarity=0.046 Sum_probs=27.2
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEece
Q 032770 28 VLHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~ 62 (134)
..-| +-.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 101 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKAt 133 (160)
T 1gx1_A 101 AQAP-KMLPHIPQMRVFIAEDLGC-HMDDVNVKAT 133 (160)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHTTC-CGGGEEEEEE
T ss_pred cCCC-cchHHHHHHHHHHHHHhCC-CCceEEEEEc
Confidence 3344 5689999999999999999 9999888643
No 174
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=24.52 E-value=77 Score=24.26 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=23.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 26 IDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 26 ~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
++|.++| .++......|++.++. +++.++++|
T Consensus 216 lei~~~~---~~K~~~l~~l~~~~~~-~~~~~~~~G 247 (301)
T 2b30_A 216 AEVTKLG---HDKYTGINYLLKHYNI-SNDQVLVVG 247 (301)
T ss_dssp EEEEETT---CCHHHHHHHHHHHTTC-CGGGEEEEE
T ss_pred eEecCCC---CCcHHHHHHHHHHcCC-CHHHEEEEC
Confidence 4555543 6899999999999999 766665554
No 175
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.28 E-value=1.4e+02 Score=18.90 Aligned_cols=46 Identities=28% Similarity=0.351 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++.+ . .+.+.|||.| |.|.+.|..
T Consensus 25 ~~~~~~~l~~~f~-~~G~-i~~~~i~~~---~--~g~~~g~afV~f~~~~~a~~ 71 (114)
T 2do0_A 25 YKVGWKKLKEVFS-MAGV-VVRADILED---K--DGKSRGIGTVTFEQSIEAVQ 71 (114)
T ss_dssp TTCCHHHHHHHHT-TTSC-EEEEEEEEC---T--TCSEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eEEEEEEEC---C--CCCeeeEEEEEECCHHHHHH
Confidence 4568889888774 4553 122222222 2 2677788876 677666543
No 176
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.19 E-value=1.2e+02 Score=18.52 Aligned_cols=39 Identities=10% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++. |+. =.++.++ .|||.| |+|.+.|.+
T Consensus 18 ~~~t~~~l~~~F~~-~G~-i~~v~~~------------~g~afV~f~~~~~A~~ 57 (90)
T 2dnq_A 18 REATEQEIRSLFEQ-YGK-VLECDII------------KNYGFVHIEDKTAAED 57 (90)
T ss_dssp SSCCHHHHHHHHHT-SSC-EEEEEEE------------TTEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-CCC-EEEEEEE------------CCEEEEEECCHHHHHH
Confidence 46788899888854 554 2233332 245555 667666544
No 177
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=24.12 E-value=1.6e+02 Score=19.34 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=31.3
Q ss_pred ccEEEEeeeeeeccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032770 4 KAITIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 4 ~~v~i~~~k~~~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~ 60 (134)
+.|+|.+.. +.++.+.+.++|. ++-+-.+|+++|....|++...+-+++
T Consensus 14 ~~v~l~It~----s~~~~~~~~~~v~----~~~TV~~LK~kI~~~~GiP~~~QrL~~ 62 (95)
T 2kjr_A 14 DFIKVNVSN----SHNDAVAFEVKLA----KDLTVAQLKTKLEILTGGCAGTMKVQV 62 (95)
T ss_dssp CEEEEEEEE----SSCSCEEEEEEEE----TTCBHHHHHHHHHHHHCSCTTTEEEEE
T ss_pred CeEEEEEEE----CCCCceEEEEEeC----ccCHHHHHHHHHHHHHCcCHHHeEEEE
Confidence 457777654 4444444444433 556678999999999999444444444
No 178
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=24.00 E-value=1.8e+02 Score=19.90 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+..+|++.++. ||. =.++.+ ...-..+.+.|||.| |+|.+.|.
T Consensus 124 ~~~~~~~l~~~f~~-~G~-v~~~~~----~~~~~~~~~~g~afV~f~~~~~a~ 170 (198)
T 2yh0_A 124 NYLNDDQVKELLTS-FGP-LKAFNL----VKDSATGLSKGYAFCEYVDINVTD 170 (198)
T ss_dssp TTCCHHHHHHHHHT-BSC-EEEEEE----EECTTTCSEEEEEEEEESSSSHHH
T ss_pred CCCCHHHHHHHHHH-cCC-ccEEEE----eecCCCCCcceEEEEEECCHHHHH
Confidence 35678888888854 554 122222 222235667788876 66655554
No 179
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=23.97 E-value=29 Score=20.55 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeEE
Q 032770 32 GRANVSKAELKEKLARMYDVRDANAIF 58 (134)
Q Consensus 32 g~~Tpsr~eI~~kLA~~~~~~~~~~Iv 58 (134)
|...|+.. ...+||..|++ +++.++
T Consensus 46 g~~~~~~~-~l~~ia~~l~~-~~~~l~ 70 (76)
T 3bs3_A 46 NKSQPSLD-MLVKVAELLNV-DPRQLI 70 (76)
T ss_dssp TSSCCCHH-HHHHHHHHHTS-CGGGGB
T ss_pred CCCCCCHH-HHHHHHHHHCc-CHHHHh
Confidence 45566654 45789999999 777654
No 180
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=23.83 E-value=45 Score=25.44 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~ 60 (134)
+.|.-.++++.||+.+++ +++.|++.
T Consensus 63 ~~~~~~~lr~~la~~~g~-~~~~i~~t 88 (360)
T 3hdo_A 63 PSASSQKLREVAGELYGF-DPSWIIMA 88 (360)
T ss_dssp CCSSCHHHHHHHHHHHTC-CGGGEEEE
T ss_pred CCCchHHHHHHHHHHhCc-CcceEEEc
Confidence 344558999999999998 77777764
No 181
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.82 E-value=1.7e+02 Score=19.95 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..||++.+ ..||. =.++.++.+ .|||.| |++.+.|.+
T Consensus 41 ~~vte~dL~~lF-~~fG~-V~~v~i~~~----------kG~AFVeF~~~e~A~~ 82 (119)
T 2ad9_A 41 IDVTEGEVISLG-LPFGK-VTNLLMLKG----------KNQAFIEMNTEEAANT 82 (119)
T ss_dssp TTCCHHHHHHHH-TTTSC-CCEEEEEGG----------GTEEEEECSCHHHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-EEEEEEeCC----------CCEEEEEECCHHHHHH
Confidence 457788888766 56776 355655543 467766 667666543
No 182
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=23.70 E-value=72 Score=20.78 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++ .|||.| |.|.+.|.+
T Consensus 41 ~~~t~~~L~~~F~-~~G~-i~~v~i~------------kg~afV~f~~~~~A~~ 80 (108)
T 2jvo_A 41 LDVQESELNEIFG-PFGP-MKEVKIL------------NGFAFVEFEEAESAAK 80 (108)
T ss_dssp TTCCHHHHHHHHT-TTSC-CCEEEEE------------TTEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEE------------CCEEEEEECCHHHHHH
Confidence 4567888888884 4554 2333333 466666 666666543
No 183
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=23.59 E-value=79 Score=21.05 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=26.6
Q ss_pred EEEEEEcCCCCCCCH-----HHHHHHHHhHcCCCCCCeEEEece
Q 032770 24 FVIDVLHPGRANVSK-----AELKEKLARMYDVRDANAIFVFKF 62 (134)
Q Consensus 24 i~~~v~H~g~~Tpsr-----~eI~~kLA~~~~~~~~~~IvV~~~ 62 (134)
..++|.-.|.-+|.. ++|-+.|.+.|++ +++.|+|.=.
T Consensus 57 a~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi-~~~riyI~f~ 99 (114)
T 3djh_A 57 ALCSLHSIGKIGGAQNRSYSKLLCGLLAERLRI-SPDRVYINYY 99 (114)
T ss_dssp EEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCC-CGGGEEEEEE
T ss_pred EEEEEEEccCCCHHHHHHHHHHHHHHHHHHhCc-CcceEEEEEE
Confidence 345566666666654 4677888889999 8888887533
No 184
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.42 E-value=91 Score=19.37 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .|+. =.++.++ + + .|||.| |.|.+.|.+
T Consensus 27 ~~~t~~~l~~~F~-~~G~-v~~v~~~----~--~----~g~afV~f~~~~~A~~ 68 (97)
T 1why_A 27 PNTSLAALAREFD-RFGS-IRTIDHV----K--G----DSFAYIQYESLDAAQA 68 (97)
T ss_dssp SSCCHHHHHHHHH-TTSC-EEEEEEC----S--S----SCCEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-eeEEEEe----C--C----CCEEEEEECCHHHHHH
Confidence 4567888888774 4554 1222222 2 2 346655 666665543
No 185
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=23.39 E-value=45 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032770 35 NVSKAELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 35 Tpsr~eI~~kLA~~~~~~~~~~IvV~ 60 (134)
.|.-.++++.||+.+++ +++.|++.
T Consensus 57 ~~~~~~lr~~la~~~~~-~~~~v~~~ 81 (356)
T 1fg7_A 57 ECQPKAVIENYAQYAGV-KPEQVLVS 81 (356)
T ss_dssp CSSCHHHHHHHHHHHTS-CGGGEEEE
T ss_pred CccHHHHHHHHHHHhCC-ChHHEEEc
Confidence 34468999999999999 77766654
No 186
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=23.38 E-value=1.4e+02 Score=19.45 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=23.9
Q ss_pred EEEEEEcCCCCCCCHH-----HHHHHHHhHcCCCCCCeEEE
Q 032770 24 FVIDVLHPGRANVSKA-----ELKEKLARMYDVRDANAIFV 59 (134)
Q Consensus 24 i~~~v~H~g~~Tpsr~-----eI~~kLA~~~~~~~~~~IvV 59 (134)
+.++|.-.|+-||..+ +|-+.|++.+|+ +++.|+|
T Consensus 58 ~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi-~~~~v~I 97 (112)
T 3b64_A 58 ACVRVEALGGYGPSEPEKVTSIVTAAITKECGI-VADRIFV 97 (112)
T ss_dssp EEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCC-CGGGEEE
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc-CcceEEE
Confidence 4566665665677643 577788889999 6666554
No 187
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=23.15 E-value=62 Score=24.27 Aligned_cols=32 Identities=13% Similarity=0.352 Sum_probs=26.6
Q ss_pred EEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 28 VLHPGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 28 v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
..-| +-.|-+.++++.||+.+++ +++.|-|.-
T Consensus 103 ~q~P-Ki~p~~~~m~~~ia~~L~~-~~~~V~vKA 134 (160)
T 2pmp_A 103 LQRP-KISPHKETIRSNLSKLLGA-DPSVVNLKA 134 (160)
T ss_dssp CSSS-CCGGGHHHHHHHHHHHHTC-CGGGEEEEE
T ss_pred ecCC-cCHHHHHHHHHHHHHHHCC-CcceEEEEE
Confidence 3345 5689999999999999999 999988764
No 188
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=23.02 E-value=49 Score=18.84 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=19.1
Q ss_pred EEEEcCCCCCCC-HH----HHHHHHHhHcCCCCCCeEEE
Q 032770 26 IDVLHPGRANVS-KA----ELKEKLARMYDVRDANAIFV 59 (134)
Q Consensus 26 ~~v~H~g~~Tps-r~----eI~~kLA~~~~~~~~~~IvV 59 (134)
+.|...++.|+. +. +|-+.|+..+++ +++.++|
T Consensus 6 i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~-p~~~v~v 43 (63)
T 2x4k_A 6 VNVKLLEGRSDEQLKNLVSEVTDAVEKTTGA-NRQAIHV 43 (63)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHHHHHHCC-CGGGCEE
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHHHHhCc-CcccEEE
Confidence 344444444554 33 455667778899 6665555
No 189
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.57 E-value=1e+02 Score=19.42 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=30.4
Q ss_pred EEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCC-CCEEEEEEEE-eCCHHHHHhc
Q 032770 25 VIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFG-GGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG-~~~s~g~a~I-Yds~e~~kk~ 87 (134)
.+-|-.. ....+.++|++.++. |++ +-|. |..... .+.+.|||.| |.|.+.|.+.
T Consensus 17 ~l~V~nl-p~~~t~~~l~~~F~~-~Gi-----~~v~-i~~~~~~~g~~~g~afV~f~~~~~a~~A 73 (104)
T 1wi8_A 17 TAFLGNL-PYDVTEESIKEFFRG-LNI-----SAVR-LPREPSNPERLKGFGYAEFEDLDSLLSA 73 (104)
T ss_dssp EEEEESC-CSSCCHHHHHHHTTT-SCE-----EEEE-CCBCSSCTTSBCSCEEEEESSHHHHHHH
T ss_pred EEEEeCC-CCcCCHHHHHHHHHH-CCc-----eEEE-EecCCCCCCCcCeEEEEEECCHHHHHHH
Confidence 3344443 356778888877743 343 1221 222222 2677788877 7777777653
No 190
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=22.52 E-value=30 Score=20.29 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeE
Q 032770 32 GRANVSKAELKEKLARMYDVRDANAI 57 (134)
Q Consensus 32 g~~Tpsr~eI~~kLA~~~~~~~~~~I 57 (134)
|...|+... ..+||..|++ +++.+
T Consensus 49 g~~~~~~~~-l~~l~~~l~~-~~~~l 72 (74)
T 1y7y_A 49 GQRNVSLVN-ILKLATALDI-EPREL 72 (74)
T ss_dssp TCSCCBHHH-HHHHHHHTTS-CGGGG
T ss_pred CCCCCCHHH-HHHHHHHhCc-CHHHH
Confidence 555666544 5689999999 76654
No 191
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=22.51 E-value=62 Score=21.45 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=19.4
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeEEE
Q 032770 32 GRANVSKAELKEKLARMYDVRDANAIFV 59 (134)
Q Consensus 32 g~~Tpsr~eI~~kLA~~~~~~~~~~IvV 59 (134)
|...|+ .+...+||..|++ +++.++.
T Consensus 59 G~~~ps-~~~l~~ia~~l~v-~~~~l~~ 84 (111)
T 3mlf_A 59 DSTNIK-DSLLSKYMSAFNV-KYDDIFL 84 (111)
T ss_dssp CCTTCC-HHHHHHHHHHHTC-CGGGEEC
T ss_pred CCCCCC-HHHHHHHHHHhCc-CHHHHhC
Confidence 455676 4566899999999 8887753
No 192
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.48 E-value=1.6e+02 Score=20.90 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEe
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~ 60 (134)
+.-+-.|+++.||..++++...+.++|
T Consensus 35 ~d~TV~dLKe~ls~~~~iP~e~qrLIy 61 (118)
T 2daf_A 35 VDTILKYLKDHFSHLLGIPHSVLQIRY 61 (118)
T ss_dssp SSSCSHHHHHHHHHHHTCCTTTEEEEE
T ss_pred CCCcHHHHHHHHHhhhCCChHHEEEEE
Confidence 556788999999999999444444444
No 193
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=22.39 E-value=2.4e+02 Score=23.33 Aligned_cols=46 Identities=17% Similarity=0.408 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
...+-.+|.+.++. ||. =.++.|+.+- -.+.+.|||+| |.+.+.|.
T Consensus 112 ~~~te~~L~~~F~~-~G~-I~~v~i~~d~----~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 112 YDTTESKLRREFEV-YGP-IKRIHMVYSK----RSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred CCCCHHHHHHHHHH-cCC-eeEEEeeccC----CCCCccceEEEeeccHHHHH
Confidence 45677888888855 564 2334343332 24566777776 56665554
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=22.37 E-value=36 Score=23.25 Aligned_cols=46 Identities=28% Similarity=0.456 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYds~e~~k 85 (134)
...+.++|++.++....+ .. +++....| |.....||+. |.+.+.|.
T Consensus 23 ~~~t~~~l~~~f~~~g~~-~~--~~~~~~~~--~~~~g~afV~-f~~~~~a~ 68 (175)
T 1fje_B 23 PNKSVAELKVAISELFAK-ND--LAVVDVRT--GTNRKFGYVD-FESAEDLE 68 (175)
T ss_dssp TTSCHHHHHHHHHHHHHH-HT--CCCCEEEE--ETTTTEEEEE-ESSHHHHH
T ss_pred CCCCHHHHHHHHHHhCCc-ce--EEEEECCC--CccccEEEEE-ECCHHHHH
Confidence 567889999999887766 32 34444444 4433345554 55555444
No 195
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=22.37 E-value=38 Score=23.16 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+.++|++.++ .||. =.++.++.+- -.+.+.|||.| |+|.+.+.+
T Consensus 57 ~~~te~~L~~~F~-~~G~-i~~v~i~~~~----~~g~~~G~afV~F~~~~~A~~ 104 (135)
T 2lea_A 57 YRTSPDTLRRVFE-KYGR-VGDVYIPRDR----YTKESRGFAFVRFHDKRDAED 104 (135)
T ss_dssp SSCHHHHHHHHHG-GGSC-CSEEECCCCS----SSSSCCSCCEEECSCHHHHHH
T ss_pred CCCCHHHHHHHHH-hcCC-EEEEEEEecC----CCCccceEEEEEECCHHHHHH
Confidence 4567888888875 4564 2333333222 23556777777 777776654
No 196
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=22.33 E-value=64 Score=24.23 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=26.5
Q ss_pred EcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEece
Q 032770 29 LHPGRANVSKAELKEKLARMYDVRDANAIFVFKF 62 (134)
Q Consensus 29 ~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~ 62 (134)
..| +-.|-+.++++.||+.+++ +++.|-|.-=
T Consensus 107 q~P-Kl~p~~~~m~~~la~~L~~-~~~~V~vKAt 138 (162)
T 3re3_A 107 QAP-KMLPHIEKMRACLANILEI-QISQINIKAT 138 (162)
T ss_dssp SSS-CCGGGHHHHHHHHHHHHTS-CGGGEEEEEE
T ss_pred CCC-cchhHHHHHHHHHHHHHCC-CCceEEEEEe
Confidence 344 5678999999999999999 8898888643
No 197
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=22.07 E-value=2.2e+02 Score=20.29 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.+ ..||. =.++.++ ..-..+.+.|||.| |.+.+.+.+
T Consensus 25 ~~~te~~L~~~F-~~~G~-I~~v~i~----~d~~tg~~~G~afV~F~~~~~A~~ 72 (213)
T 4f02_A 25 PDVTEAMLYEKF-SPAGP-ILSIRVC----RDMITRRSLGYAYVNFQQPADAER 72 (213)
T ss_dssp TTCCHHHHHHHH-GGGSC-EEEEEEE----ECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHH-HhhCC-EEEEEEe----cccCCCCccccccceeCCHHHHHH
Confidence 556788888877 44554 1233333 33345678888887 666666554
No 198
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=22.02 E-value=1.8e+02 Score=19.35 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCe--EEEeceeecCCCCEEEEEEEE-eCCHHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANA--IFVFKFRTHFGGGKSTGFGLI-YDSVESAK 85 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~--IvV~~~~T~fG~~~s~g~a~I-Yds~e~~k 85 (134)
.+.+..+|++.++ .||. =..+ .++..++.. -.+.+.|||.| |.+.+.|.
T Consensus 55 ~~~te~~L~~~F~-~~G~-i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 55 KHVQEKDLKYIFG-RYVD-FSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp TTCCHHHHHHHHG-GGCC-TTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHH-HhCC-cccccccceeeEEec-cCCCcccEEEEEeCCHHHHH
Confidence 4578889998885 4564 2332 011111110 02445677766 66666554
No 199
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.87 E-value=74 Score=21.48 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHH
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESA 84 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~ 84 (134)
...+.+||++.+ ..||. =.++.++.+ .|||.| |++.+.|
T Consensus 26 ~~vte~dL~~lF-~~fG~-V~~v~i~~~----------kGfaFVeF~~~~~A 65 (105)
T 1sjq_A 26 IDVTEGEVISLG-LPFGK-VTNLLMLKG----------KNQAFIEMNTEEAA 65 (105)
T ss_dssp TTSCHHHHHHHH-HHHCC-EEEEEEETT----------TTEEEEEESSHHHH
T ss_pred CCCCHHHHHHHH-HhcCC-EEEEEEEcC----------CCEEEEEECCHHHH
Confidence 355778888777 56775 345555542 467776 6666644
No 200
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=21.50 E-value=71 Score=25.08 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=23.2
Q ss_pred CCCCCCCHHHHHHHHHhHcCCCCCCeEEEec
Q 032770 31 PGRANVSKAELKEKLARMYDVRDANAIFVFK 61 (134)
Q Consensus 31 ~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~ 61 (134)
++.+++...++.+.||+.+++ +++.|++.+
T Consensus 80 ~~~~~~~~~~l~~~la~~~~~-~~~~v~~~~ 109 (433)
T 1zod_A 80 SEMLSRPVVDLATRLANITPP-GLDRALLLS 109 (433)
T ss_dssp TTCCCHHHHHHHHHHHHHSCT-TCCEEEEES
T ss_pred cccCCHHHHHHHHHHHHhCCC-CcCEEEEeC
Confidence 345566788999999999998 777777663
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=21.33 E-value=2.5e+02 Score=20.73 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. ||. ....|.+.. ... +.+.|||.| |.|.+.|.+
T Consensus 127 ~~~t~~~l~~~f~~-~G~-~i~~v~i~~--~~~--~~~~g~afV~f~~~~~a~~ 174 (292)
T 2ghp_A 127 PSYTQRNIRDLLQD-INV-VALSIRLPS--LRF--NTSRRFAYIDVTSKEDARY 174 (292)
T ss_dssp TTCCHHHHHHHHHH-TTC-CCCEEECC-----------CCEEEEECSSHHHHHH
T ss_pred CCCCHHHHHHHHHH-hCC-CeEEEEEEe--CCC--CCcceEEEEEECCHHHHHH
Confidence 46778899888855 663 234443332 222 456677766 666665544
No 202
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=21.29 E-value=1.6e+02 Score=19.27 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=23.8
Q ss_pred EEEEEEcCCCCCCCHH-----HHHHHHHhHcCCCCCCeEEEe
Q 032770 24 FVIDVLHPGRANVSKA-----ELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 24 i~~~v~H~g~~Tpsr~-----eI~~kLA~~~~~~~~~~IvV~ 60 (134)
+.++|.-.|+-||..+ +|-+.|++.+|+ +++.|+|.
T Consensus 58 ~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi-~~~~v~I~ 98 (115)
T 2xcz_A 58 CYVEVKSIGALDGSRTQEVSELVCGHIEQNLGI-PADRIYIG 98 (115)
T ss_dssp EEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCC-CGGGEEEE
T ss_pred EEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCc-CcccEEEE
Confidence 3445554555677754 577788889999 77766654
No 203
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=21.23 E-value=62 Score=24.23 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=36.4
Q ss_pred eccCccceEEEEEEEcCCCCCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEEeC
Q 032770 15 TNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYD 79 (134)
Q Consensus 15 ~N~LL~RrEi~~~v~H~g~~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~IYd 79 (134)
-|.||++.. +..++-.||.+.||..++. ++.||. ..|+.-||+..++
T Consensus 20 IN~lLq~~~---------~~~v~f~eia~vLs~vL~~---NvyIvs------~~GkiLG~~~~~~ 66 (170)
T 2gx5_A 20 INSMLQAAA---------GKPVNFKEMAETLRDVIDS---NIFVVS------RRGKLLGYSINQQ 66 (170)
T ss_dssp HHHHHHSCC---------CSCCCHHHHHHHHHHHHTS---EEEEEE------TTSBEEEEECSSC
T ss_pred HHHHHHhCC---------CCCCCHHHHHHHHHHHhCC---CEEEEc------CCCCEEEEecccc
Confidence 377777764 3568999999999999998 455544 5778899998875
No 204
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=20.81 E-value=1.1e+02 Score=20.76 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
...+..+|++.++. ||. =.++.++.+ +.|||.| |+|.+.+..
T Consensus 83 ~~~t~~~l~~~F~~-~G~-i~~v~i~~~---------~~g~afV~f~~~~~a~~ 125 (150)
T 2i2y_A 83 NNGNKTELERAFGY-YGP-LRSVWVARN---------PPGFAFVEFEDPRDAAD 125 (150)
T ss_dssp SCCSCHHHHHHHHH-HSC-EEEEEECSS---------SCSEEEEEESSHHHHHH
T ss_pred CCCCHHHHHHHHHh-hCC-EEEEEEeeC---------CCcEEEEEECCHHHHHH
Confidence 45678889888865 554 123333222 4667766 677766543
No 205
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=20.74 E-value=1.2e+02 Score=20.25 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=33.2
Q ss_pred CccceEEEEEEEcC-CCCC--CCHHHHHHHHHhHcCCCCCC-eEEEeceeecCC
Q 032770 18 LLSRKQFVIDVLHP-GRAN--VSKAELKEKLARMYDVRDAN-AIFVFKFRTHFG 67 (134)
Q Consensus 18 LL~RrEi~~~v~H~-g~~T--psr~eI~~kLA~~~~~~~~~-~IvV~~~~T~fG 67 (134)
+...-.+.+.|+|+ |+++ |.-......||..+.. .|+ .|.|.|.--..|
T Consensus 6 ~~~~~~~~~~v~F~~~s~~l~~~~~~~L~~~a~~l~~-~~~~~i~I~GhtD~~g 58 (123)
T 3td3_A 6 LTEDLNMELRVFFDTNKSNIKDQYKPEIAKVAEKLSE-YPNATARIEGHTDNTG 58 (123)
T ss_dssp EEEEEEEEEEEECCTTCCCCCGGGHHHHHHHHHHHHH-STTCEEEEEECCCSCS
T ss_pred ccccccceeEEEeCCCChhcCHHHHHHHHHHHHHHHh-CCCceEEEEEEeCCCC
Confidence 33445677888887 5554 4445778889999987 666 477776655555
No 206
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=20.48 E-value=77 Score=22.05 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCCCH-----HHHHHHHHhHcCCCCCCeEEEe
Q 032770 25 VIDVLHPGRANVSK-----AELKEKLARMYDVRDANAIFVF 60 (134)
Q Consensus 25 ~~~v~H~g~~Tpsr-----~eI~~kLA~~~~~~~~~~IvV~ 60 (134)
.++|.-.|..||.. ++|.+.|++.+++ +++.|+|.
T Consensus 80 ~v~v~sig~~~~e~n~~~s~~i~~~l~~~LgI-~~~rvyI~ 119 (133)
T 3fwt_A 80 YVRVESWGEYAPSKPKMMTPRIAAAITKECGI-PAERIYVF 119 (133)
T ss_dssp EEEEEEEECCCTHHHHHHHHHHHHHHHHHHCC-CGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCc-ChhhEEEE
Confidence 44454446667764 4677888888999 77777764
No 207
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.26 E-value=37 Score=19.78 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHhHcCCCCCCeE
Q 032770 32 GRANVSKAELKEKLARMYDVRDANAI 57 (134)
Q Consensus 32 g~~Tpsr~eI~~kLA~~~~~~~~~~I 57 (134)
|...|+. +...+||..|++ +++.+
T Consensus 46 g~~~~~~-~~l~~la~~l~v-~~~~l 69 (71)
T 2ewt_A 46 GDRAVTV-QRLAELADFYGV-PVQEL 69 (71)
T ss_dssp TCSCCCH-HHHHHHHHHHTS-CGGGG
T ss_pred CCCCCCH-HHHHHHHHHHCc-CHHHH
Confidence 4455665 455679999999 76643
No 208
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=20.11 E-value=76 Score=20.05 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHhHcCCCCCCeEEEeceeecC-CCCEEEEEEEE-eCCHHHHHhc
Q 032770 34 ANVSKAELKEKLARMYDVRDANAIFVFKFRTHF-GGGKSTGFGLI-YDSVESAKKF 87 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~~IvV~~~~T~f-G~~~s~g~a~I-Yds~e~~kk~ 87 (134)
...+.++|++.++. ||+ .-| .|...- ..|.+.|||.| |.|.+.+.+.
T Consensus 29 ~~~t~~~l~~~F~~-~Gi-----~~v-~i~~~~~~~g~~~g~afV~f~~~~~a~~A 77 (100)
T 2j76_E 29 YDVTEESIKEFFRG-LNI-----SAV-RLPREPSNPERLKGFGYAEFEDLDSLLSA 77 (100)
T ss_dssp SCCSSSHHHHHSCS-SCE-----EEE-ECSCCTTTTCCCCSCEEEEECCHHHHHHH
T ss_pred CCCCHHHHHHHHHh-cCC-----eEE-EEEecCCcCCccCeEEEEEECCHHHHHHH
Confidence 34566777766532 332 222 222222 35677888877 7777776653
No 209
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=25.42 E-value=22 Score=23.29 Aligned_cols=47 Identities=21% Similarity=0.243 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHhHcCCCCCC--------eEEEeceeecCCCCEEEEEEEE-eCCHHHHHh
Q 032770 34 ANVSKAELKEKLARMYDVRDAN--------AIFVFKFRTHFGGGKSTGFGLI-YDSVESAKK 86 (134)
Q Consensus 34 ~Tpsr~eI~~kLA~~~~~~~~~--------~IvV~~~~T~fG~~~s~g~a~I-Yds~e~~kk 86 (134)
.+.+.++|++.++. |+. -.+ +.++ +.-..+.+.|||.| |.|.+.|.+
T Consensus 17 ~~~t~~~l~~~F~~-~G~-i~~~~~~~~~~v~i~----~~~~~g~~~g~afV~f~~~~~A~~ 72 (116)
T 2lcw_A 17 ENVTIESVADYFKQ-IGI-IKTNKKTGQPMINLY----TDRETGKLKGEATVSFDDPPSAKA 72 (116)
Confidence 34567788877754 343 122 2222 22233667888877 566665543
Done!