Query 032772
Match_columns 134
No_of_seqs 106 out of 599
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00153 histone H2A; Provisio 100.0 1.7E-50 3.8E-55 294.8 11.3 123 1-125 1-123 (129)
2 PLN00157 histone H2A; Provisio 100.0 4.8E-50 1E-54 293.4 12.3 129 1-129 1-129 (132)
3 PTZ00017 histone H2A; Provisio 100.0 8E-49 1.7E-53 287.8 11.8 125 1-125 1-126 (134)
4 PLN00156 histone H2AX; Provisi 100.0 6.4E-48 1.4E-52 284.0 11.5 123 3-125 5-128 (139)
5 PTZ00252 histone H2A; Provisio 100.0 7.8E-48 1.7E-52 281.6 11.0 123 1-124 1-125 (134)
6 KOG1756 Histone 2A [Chromatin 100.0 5.5E-47 1.2E-51 274.2 10.2 127 1-127 1-128 (131)
7 PLN00154 histone H2A; Provisio 100.0 1.3E-46 2.8E-51 276.0 11.2 112 12-124 24-136 (136)
8 cd00074 H2A Histone 2A; H2A is 100.0 1.3E-45 2.8E-50 265.6 11.0 108 14-121 8-115 (115)
9 smart00414 H2A Histone 2A. 100.0 8.8E-46 1.9E-50 263.2 9.8 105 18-122 1-105 (106)
10 COG5262 HTA1 Histone H2A [Chro 100.0 1.1E-44 2.5E-49 259.3 9.6 124 4-127 4-127 (132)
11 KOG1757 Histone 2A [Chromatin 100.0 6.9E-40 1.5E-44 233.3 4.7 110 14-124 18-128 (131)
12 PLN00155 histone H2A; Provisio 99.9 6.3E-23 1.4E-27 130.9 4.7 58 1-60 1-58 (58)
13 COG5247 BUR6 Class 2 transcrip 99.6 3.6E-15 7.8E-20 104.9 5.6 88 21-108 18-105 (113)
14 PF00125 Histone: Core histone 99.6 5.5E-15 1.2E-19 97.6 4.9 73 20-92 2-75 (75)
15 KOG1659 Class 2 transcription 99.4 4.2E-13 9.2E-18 105.1 5.9 83 18-100 5-87 (224)
16 PLN00035 histone H4; Provision 99.3 1.7E-12 3.6E-17 92.0 5.1 88 1-91 1-93 (103)
17 PF00808 CBFD_NFYB_HMF: Histon 99.2 3.3E-11 7.2E-16 78.0 6.6 64 26-89 2-65 (65)
18 PTZ00015 histone H4; Provision 99.1 8.8E-11 1.9E-15 83.1 5.7 87 1-90 1-93 (102)
19 COG2036 HHT1 Histones H3 and H 99.0 7.5E-10 1.6E-14 76.9 5.2 69 21-90 14-82 (91)
20 smart00803 TAF TATA box bindin 99.0 2.3E-09 4.9E-14 70.1 6.4 64 26-90 2-65 (65)
21 COG5208 HAP5 CCAAT-binding fac 98.8 5.6E-09 1.2E-13 82.8 5.7 76 24-99 107-182 (286)
22 cd00076 H4 Histone H4, one of 98.8 5.5E-09 1.2E-13 71.8 4.9 73 16-91 5-77 (85)
23 smart00417 H4 Histone H4. 98.7 3.3E-08 7.1E-13 66.3 5.5 69 17-88 6-74 (74)
24 KOG1657 CCAAT-binding factor, 98.7 1.6E-08 3.4E-13 81.0 3.7 85 17-101 65-149 (236)
25 cd07981 TAF12 TATA Binding Pro 98.2 7E-06 1.5E-10 54.4 6.1 65 28-92 3-67 (72)
26 cd07979 TAF9 TATA Binding Prot 98.0 1.6E-05 3.4E-10 57.4 5.9 60 31-91 6-65 (117)
27 KOG3467 Histone H4 [Chromatin 97.8 3.8E-05 8.1E-10 53.2 4.8 87 1-90 1-92 (103)
28 PF02969 TAF: TATA box binding 97.7 0.00017 3.6E-09 47.4 6.1 64 26-90 3-66 (66)
29 smart00576 BTP Bromodomain tra 97.7 0.00015 3.2E-09 48.4 5.7 59 32-91 12-70 (77)
30 smart00428 H3 Histone H3. 97.6 0.00017 3.6E-09 51.4 5.2 68 23-90 26-99 (105)
31 cd08050 TAF6 TATA Binding Prot 97.5 0.00021 4.6E-09 59.8 6.1 59 31-90 4-62 (343)
32 cd08048 TAF11 TATA Binding Pro 97.4 0.00062 1.3E-08 46.7 6.3 63 27-90 17-82 (85)
33 KOG0869 CCAAT-binding factor, 96.9 0.0026 5.5E-08 48.4 5.7 65 26-90 32-97 (168)
34 PF04719 TAFII28: hTAFII28-lik 96.8 0.0028 6E-08 44.0 5.0 65 26-90 23-88 (90)
35 KOG3219 Transcription initiati 96.8 0.0013 2.8E-08 51.4 3.6 65 25-90 111-176 (195)
36 PTZ00463 histone H2B; Provisio 96.7 0.01 2.3E-07 42.9 7.2 60 31-90 33-92 (117)
37 smart00427 H2B Histone H2B. 96.6 0.0076 1.6E-07 41.8 5.8 60 31-90 6-65 (89)
38 PLN00158 histone H2B; Provisio 96.5 0.0096 2.1E-07 43.1 5.9 61 30-90 31-91 (116)
39 PF15511 CENP-T: Centromere ki 96.3 0.0073 1.6E-07 51.9 5.5 71 14-84 339-414 (414)
40 PF15630 CENP-S: Kinetochore c 96.2 0.034 7.4E-07 37.3 6.9 48 48-95 26-76 (76)
41 KOG0871 Class 2 transcription 96.2 0.015 3.3E-07 43.8 5.7 70 22-91 8-78 (156)
42 KOG1658 DNA polymerase epsilon 96.1 0.0062 1.3E-07 46.2 3.2 76 24-99 57-132 (162)
43 PF09415 CENP-X: CENP-S associ 96.0 0.034 7.3E-07 37.0 6.1 61 28-88 1-64 (72)
44 PLN00160 histone H3; Provision 95.8 0.022 4.8E-07 40.0 4.8 68 23-90 18-90 (97)
45 PF03847 TFIID_20kDa: Transcri 95.8 0.033 7.1E-07 36.6 5.3 62 31-92 4-65 (68)
46 PTZ00018 histone H3; Provision 95.6 0.026 5.5E-07 42.0 4.9 66 24-89 60-129 (136)
47 PLN00161 histone H3; Provision 95.5 0.037 8E-07 41.1 5.4 68 23-90 52-124 (135)
48 PLN00121 histone H3; Provision 95.5 0.03 6.6E-07 41.6 4.9 66 24-89 60-129 (136)
49 PF07524 Bromo_TP: Bromodomain 95.3 0.065 1.4E-06 35.3 5.6 58 32-90 12-69 (77)
50 KOG0870 DNA polymerase epsilon 95.1 0.067 1.4E-06 41.0 5.7 67 23-90 7-76 (172)
51 PF02291 TFIID-31kDa: Transcri 95.0 0.091 2E-06 38.6 6.2 61 29-90 15-75 (129)
52 KOG1142 Transcription initiati 93.7 0.13 2.9E-06 41.8 4.9 66 27-92 155-220 (258)
53 KOG1744 Histone H2B [Chromatin 93.5 0.4 8.6E-06 35.3 6.6 65 23-90 37-101 (127)
54 KOG1745 Histones H3 and H4 [Ch 92.8 0.13 2.7E-06 38.4 3.2 63 28-90 68-131 (137)
55 PF02269 TFIID-18kDa: Transcri 92.7 0.14 3.1E-06 35.3 3.2 64 33-96 8-71 (93)
56 cd07978 TAF13 The TATA Binding 91.8 0.9 1.9E-05 31.4 6.3 63 32-95 8-70 (92)
57 PLN00163 histone H4; Provision 87.3 0.21 4.6E-06 32.0 0.3 45 1-48 1-50 (59)
58 COG5094 TAF9 Transcription ini 83.8 4.5 9.8E-05 29.9 5.9 63 29-92 17-82 (145)
59 KOG3334 Transcription initiati 80.5 7.1 0.00015 29.4 6.0 56 32-91 19-77 (148)
60 COG5150 Class 2 transcription 79.8 6.7 0.00014 29.1 5.6 66 24-91 9-77 (148)
61 PF15510 CENP-W: Centromere ki 77.2 6.4 0.00014 27.6 4.6 66 24-89 14-93 (102)
62 COG5251 TAF40 Transcription in 74.3 3.9 8.5E-05 31.8 3.2 64 26-90 115-179 (199)
63 KOG2549 Transcription initiati 73.5 11 0.00024 34.1 6.2 58 33-90 17-74 (576)
64 PF02861 Clp_N: Clp amino term 73.3 2.8 6.2E-05 24.6 1.9 33 68-100 1-35 (53)
65 PF02681 DUF212: Divergent PAP 70.0 9.7 0.00021 28.4 4.4 46 50-117 5-50 (141)
66 COG1474 CDC6 Cdc6-related prot 65.6 22 0.00048 30.1 6.3 75 21-96 181-268 (366)
67 COG5095 TAF6 Transcription ini 58.3 36 0.00079 29.2 6.1 51 40-90 18-68 (450)
68 COG1963 Uncharacterized protei 57.2 17 0.00038 27.5 3.7 47 50-118 11-57 (153)
69 PF08369 PCP_red: Proto-chloro 56.8 14 0.0003 22.1 2.6 27 62-88 18-44 (45)
70 PF04604 L_biotic_typeA: Type- 54.8 8.7 0.00019 24.0 1.5 21 91-114 16-36 (51)
71 KOG1658 DNA polymerase epsilon 53.3 24 0.00053 26.9 4.0 72 23-99 8-79 (162)
72 PF13335 Mg_chelatase_2: Magne 51.7 20 0.00043 24.6 3.1 60 24-90 29-94 (96)
73 KOG4336 TBP-associated transcr 51.5 30 0.00065 29.2 4.6 84 32-116 11-101 (323)
74 TIGR02928 orc1/cdc6 family rep 50.6 58 0.0013 26.5 6.2 66 25-90 194-272 (365)
75 PF09123 DUF1931: Domain of un 49.1 13 0.00028 27.8 1.9 55 33-88 2-56 (138)
76 PRK00411 cdc6 cell division co 47.7 66 0.0014 26.5 6.2 68 24-91 201-281 (394)
77 KOG3901 Transcription initiati 47.2 28 0.0006 24.9 3.2 35 59-94 39-74 (109)
78 COG1067 LonB Predicted ATP-dep 46.3 59 0.0013 30.0 6.0 35 62-96 369-403 (647)
79 PF12767 SAGA-Tad1: Transcript 42.0 52 0.0011 26.2 4.5 41 30-71 210-250 (252)
80 PF05236 TAF4: Transcription i 41.2 70 0.0015 25.6 5.2 59 17-75 34-95 (264)
81 PF13654 AAA_32: AAA domain; P 40.4 30 0.00065 30.8 3.2 30 61-90 475-504 (509)
82 COG3636 Predicted transcriptio 39.2 32 0.0007 24.3 2.6 55 46-100 20-83 (100)
83 PRK11034 clpA ATP-dependent Cl 38.0 38 0.00083 31.6 3.6 41 61-101 6-46 (758)
84 TIGR00764 lon_rel lon-related 35.8 1.2E+02 0.0027 27.4 6.4 30 62-91 361-390 (608)
85 PF12096 DUF3572: Protein of u 33.9 36 0.00078 23.5 2.1 55 30-89 22-80 (88)
86 cd08045 TAF4 TATA Binding Prot 32.6 1.5E+02 0.0033 22.9 5.7 59 17-75 35-96 (212)
87 TIGR01128 holA DNA polymerase 32.0 1.1E+02 0.0024 24.0 4.9 67 28-94 112-180 (302)
88 PHA02943 hypothetical protein; 32.0 89 0.0019 24.0 4.1 41 61-101 76-116 (165)
89 TIGR02639 ClpA ATP-dependent C 30.8 55 0.0012 30.1 3.4 40 61-100 5-44 (731)
90 TIGR02263 benz_CoA_red_C benzo 25.3 1.1E+02 0.0024 25.9 4.0 43 56-99 136-178 (380)
91 PF08539 HbrB: HbrB-like; Int 24.2 73 0.0016 24.0 2.5 84 22-121 22-106 (158)
92 KOG1051 Chaperone HSP104 and r 24.2 49 0.0011 31.7 1.9 45 61-107 16-60 (898)
93 PRK05574 holA DNA polymerase I 24.1 1.8E+02 0.0038 23.3 4.9 63 28-94 147-215 (340)
94 PHA02669 hypothetical protein; 23.9 1E+02 0.0022 24.0 3.2 48 49-107 12-59 (210)
95 CHL00095 clpC Clp protease ATP 22.9 78 0.0017 29.6 2.9 33 62-94 10-42 (821)
96 smart00350 MCM minichromosome 22.7 1.9E+02 0.0042 25.4 5.2 65 26-90 417-502 (509)
97 PF00979 Reovirus_cap: Reoviru 22.5 80 0.0017 27.2 2.6 46 52-97 102-154 (367)
98 KOG3902 Histone acetyltransfer 21.9 2.8E+02 0.0061 23.6 5.7 60 34-93 32-91 (352)
99 PF09377 SBDS_C: SBDS protein 21.7 2.1E+02 0.0045 20.4 4.4 29 22-50 18-46 (125)
100 PRK07452 DNA polymerase III su 21.4 1.6E+02 0.0034 23.7 4.1 59 32-92 135-199 (326)
101 COG4430 Uncharacterized protei 21.1 1.2E+02 0.0025 24.1 3.1 48 55-102 109-159 (200)
102 PF09077 Phage-MuB_C: Mu B tra 20.6 33 0.00072 23.1 0.0 29 61-90 48-76 (78)
103 TIGR02639 ClpA ATP-dependent C 20.1 1E+02 0.0022 28.4 3.0 34 61-94 82-115 (731)
No 1
>PLN00153 histone H2A; Provisional
Probab=100.00 E-value=1.7e-50 Score=294.79 Aligned_cols=123 Identities=84% Similarity=1.223 Sum_probs=116.3
Q ss_pred CCCCCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 032772 1 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80 (134)
Q Consensus 1 m~~~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~I 80 (134)
|||+|++.+.+ ++..|||+||||+|||+||+|+|+++.|+.||+.+|+|||+||||||++||||+|+|.|.++++++|
T Consensus 1 m~g~~~~~~~~--~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RI 78 (129)
T PLN00153 1 MAGRGKGKTSG--KKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRI 78 (129)
T ss_pred CCCCCCCCccc--cCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 99998864422 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCCC
Q 032772 81 VPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 125 (134)
Q Consensus 81 tp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~ 125 (134)
+|+||++||+||+||+.||+++||++|||+|+||++|++||.++.
T Consensus 79 tPrHi~lAI~nDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~~ 123 (129)
T PLN00153 79 VPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGG 123 (129)
T ss_pred ChHHHHhhccCcHHHHHHHCCCccCCCccCCCcchhhcCcccCCC
Confidence 999999999999999999999999999999999999999987554
No 2
>PLN00157 histone H2A; Provisional
Probab=100.00 E-value=4.8e-50 Score=293.45 Aligned_cols=129 Identities=84% Similarity=1.220 Sum_probs=118.3
Q ss_pred CCCCCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 032772 1 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80 (134)
Q Consensus 1 m~~~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~I 80 (134)
|||||+..+.+.+++..|+|+||||+|||+||+|+|+++.|+.||+.+|+|||+||||||++||||+|+|.|.++++++|
T Consensus 1 ms~~g~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RI 80 (132)
T PLN00157 1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI 80 (132)
T ss_pred CCCCCCCCCCccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99998742212235789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCCCCCCc
Q 032772 81 VPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 129 (134)
Q Consensus 81 tp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~~~~~ 129 (134)
+|+||++||+||+||+.||+++||++|||+|+||++|+++|..++.+..
T Consensus 81 tPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~ll~kk~~~~~~~~ 129 (132)
T PLN00157 81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSGKSKGEP 129 (132)
T ss_pred cHHHHhhcccCcHHHHHHHcCceecCCccCCCcchhhcCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999976655543
No 3
>PTZ00017 histone H2A; Provisional
Probab=100.00 E-value=8e-49 Score=287.82 Aligned_cols=125 Identities=74% Similarity=1.122 Sum_probs=116.3
Q ss_pred CCCCCCCCC-CCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 032772 1 MAGRGKTLG-SGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTR 79 (134)
Q Consensus 1 m~~~~~~~~-~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~ 79 (134)
|+|+++.+. ++.++++.|+|+||||+|||+||+|||+++.|+.||+.+|+|||+||||||++||||+|+|.|.++++++
T Consensus 1 ~~~~~~~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~R 80 (134)
T PTZ00017 1 KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKR 80 (134)
T ss_pred CCCCCcCCCCcccCcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 688877643 3345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCCC
Q 032772 80 IVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 125 (134)
Q Consensus 80 Itp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~ 125 (134)
|+|+||++||+||+||+.||+++||++|||+|+||++|+++|.+++
T Consensus 81 ItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~l~~k~~~~~ 126 (134)
T PTZ00017 81 ITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLPKKSKPK 126 (134)
T ss_pred ecHHHHHhhccCcHHHHHHHcCCcccCCccCCCccHhhccCCCCcc
Confidence 9999999999999999999999999999999999999999987553
No 4
>PLN00156 histone H2AX; Provisional
Probab=100.00 E-value=6.4e-48 Score=283.99 Aligned_cols=123 Identities=83% Similarity=1.158 Sum_probs=113.4
Q ss_pred CCCCCCCCC-CCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceec
Q 032772 3 GRGKTLGSG-AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIV 81 (134)
Q Consensus 3 ~~~~~~~~~-~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~It 81 (134)
|-.++++.+ .+++.+|||+||||+|||+||+|+|+++.|+.||+.+|+|||+||||||++||||+|+|.|.++++++|+
T Consensus 5 ~~~~~~~g~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RIt 84 (139)
T PLN00156 5 GTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIV 84 (139)
T ss_pred CCCCCCCCcccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence 444444433 3467899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCCC
Q 032772 82 PRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 125 (134)
Q Consensus 82 p~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~ 125 (134)
|+||++||+||+||+.||+++||++|||+|+||++|++||+.++
T Consensus 85 PrHi~lAIrnDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~~ 128 (139)
T PLN00156 85 PRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVGKG 128 (139)
T ss_pred HHHHHhhccCcHHHHHHHCCCccCCCccCCCccHhhcccccccc
Confidence 99999999999999999999999999999999999999987554
No 5
>PTZ00252 histone H2A; Provisional
Probab=100.00 E-value=7.8e-48 Score=281.65 Aligned_cols=123 Identities=48% Similarity=0.782 Sum_probs=110.0
Q ss_pred CCCCCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHh--CCCc
Q 032772 1 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARD--NKKT 78 (134)
Q Consensus 1 m~~~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~--~~~k 78 (134)
|.+.. ++|++.++...+||+||||||||+||+|+|+++.|+.||+.+|+|||+||||||++||||+|+|.|.+ ++++
T Consensus 1 ~~~~~-~~~~~~~~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~ 79 (134)
T PTZ00252 1 MATPK-QAKKKASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPK 79 (134)
T ss_pred CCCcc-chhhcccccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 56644 44445444444599999999999999999999999999999999999999999999999999999975 6788
Q ss_pred eechhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCC
Q 032772 79 RIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGT 124 (134)
Q Consensus 79 ~Itp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~ 124 (134)
+|+|+||++||+||+||+.||+++||++|||+|+||++|++|++++
T Consensus 80 RItPrHi~lAIrNDeEL~~Ll~~vTIa~GGVlP~i~~~l~~k~~~~ 125 (134)
T PTZ00252 80 RLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKALAKKHKSG 125 (134)
T ss_pred cccHHHHHhhccChHHHHHHHcCCccCCCccCCCccHhhccccccC
Confidence 9999999999999999999999999999999999999999995444
No 6
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=100.00 E-value=5.5e-47 Score=274.18 Aligned_cols=127 Identities=74% Similarity=1.118 Sum_probs=120.6
Q ss_pred CCCCCCCCCCCCC-CCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 032772 1 MAGRGKTLGSGAA-KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTR 79 (134)
Q Consensus 1 m~~~~~~~~~~~~-~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~ 79 (134)
|+|++++++.+.+ +.+.++|.|++||||||+|+|+|+++++++||+.+|||||+||||||++||||+|+|.|+++++.+
T Consensus 1 ~s~~~k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~r 80 (131)
T KOG1756|consen 1 MSGRGKGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 80 (131)
T ss_pred CCccCCCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Confidence 8999999987654 567789999999999999999999999999999999999999999999999999999999999999
Q ss_pred echhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCCCCC
Q 032772 80 IVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGS 127 (134)
Q Consensus 80 Itp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~~~ 127 (134)
|+|+||++||+||+||++|+++|||++|||+|+||+.|++||..++..
T Consensus 81 i~PrH~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~lLpKk~~~~~~ 128 (131)
T KOG1756|consen 81 ITPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAILLPKKTGKHKS 128 (131)
T ss_pred cChHHHHHHHhCcHHHHHHhccceeccCCcccccchhhcccccccCCC
Confidence 999999999999999999999999999999999999999999877543
No 7
>PLN00154 histone H2A; Provisional
Probab=100.00 E-value=1.3e-46 Score=275.98 Aligned_cols=112 Identities=63% Similarity=0.880 Sum_probs=106.0
Q ss_pred CCCCCCCcCcccCcccchhhHHHHHhhCC-cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 12 AAKKATSRSSKAGLQFPVGRIARFLKAGK-YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 12 ~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~-~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+++..|||+||+|||||+||+|+|+++. +.+||+.+|+|||+||||||++||||+|+|.|+++++++|+|+||++||+
T Consensus 24 ~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 24 DKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred CCcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 34578999999999999999999999976 57899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHhhhcCceeeCCccCCCcccccCCCCCCC
Q 032772 91 NDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGT 124 (134)
Q Consensus 91 nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~ 124 (134)
||+||++||+ +||++|||+|+||++|+++|.++
T Consensus 104 nDeEL~~Ll~-~TIa~GGVlP~i~~~l~~k~~~~ 136 (136)
T PLN00154 104 GDEELDTLIK-GTIAGGGVIPHIHKSLINKSTKK 136 (136)
T ss_pred CcHHHHHHhc-CCccCCccCCCcchhhcccccCC
Confidence 9999999996 79999999999999999998654
No 8
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=100.00 E-value=1.3e-45 Score=265.62 Aligned_cols=108 Identities=81% Similarity=1.218 Sum_probs=105.6
Q ss_pred CCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcH
Q 032772 14 KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE 93 (134)
Q Consensus 14 ~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~ 93 (134)
++++|+|+|+||+|||+||+|||+++.++.||+++|+|||+||||||++||||+|+|.|++.++++|+|+||++||+||+
T Consensus 8 ~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~nD~ 87 (115)
T cd00074 8 SKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRNDE 87 (115)
T ss_pred cCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhccH
Confidence 57889999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceeeCCccCCCcccccCCCC
Q 032772 94 ELSKLLGDVTIANGGVMPNIHNLLLPKK 121 (134)
Q Consensus 94 EL~~L~~~~~Ia~ggv~p~~~~~~~~~k 121 (134)
|||+||+++||++|||+|+||++|+++|
T Consensus 88 EL~~L~~~vtI~~ggv~p~i~~~l~~~~ 115 (115)
T cd00074 88 ELNKLLKGVTIASGGVLPNIHKVLLPKK 115 (115)
T ss_pred HHHHHHcCCcccCCccCCCcchhhcCCC
Confidence 9999999999999999999999999885
No 9
>smart00414 H2A Histone 2A.
Probab=100.00 E-value=8.8e-46 Score=263.21 Aligned_cols=105 Identities=81% Similarity=1.223 Sum_probs=103.1
Q ss_pred CcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHh
Q 032772 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSK 97 (134)
Q Consensus 18 s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~ 97 (134)
|+|+||||+|||+||+|||+++.++.||+++|+|||+||||||++||||+|+|.|.++++++|+|+||++||+||+|||+
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~ 80 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK 80 (106)
T ss_pred CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCceeeCCccCCCcccccCCCCC
Q 032772 98 LLGDVTIANGGVMPNIHNLLLPKKT 122 (134)
Q Consensus 98 L~~~~~Ia~ggv~p~~~~~~~~~k~ 122 (134)
||+++||++|||+|+||++|++||+
T Consensus 81 L~~~vti~~ggv~p~i~~~l~~~~~ 105 (106)
T smart00414 81 LLKGVTIAQGGVLPNIHKVLLPKKT 105 (106)
T ss_pred HHcCcccCCCccCCCcchhhcccCC
Confidence 9999999999999999999999985
No 10
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-44 Score=259.30 Aligned_cols=124 Identities=69% Similarity=1.032 Sum_probs=115.7
Q ss_pred CCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechh
Q 032772 4 RGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPR 83 (134)
Q Consensus 4 ~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~ 83 (134)
.||++|...-+...++|.+++|+|||+||+|+|+.+++..||+..|+||++||||||++||||+|+|.|+++++++|+|+
T Consensus 4 ~GKGgK~a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~Pr 83 (132)
T COG5262 4 GGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPR 83 (132)
T ss_pred CCcCcccccchhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechH
Confidence 37777755546688999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCCCCC
Q 032772 84 HIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGS 127 (134)
Q Consensus 84 hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~~~ 127 (134)
||++||+||+||++|+++|+|++|||+|+||+.|+++..++..+
T Consensus 84 HlqlAIrnD~EL~~l~~~~tIa~GGvlp~I~~~ll~k~skK~sk 127 (132)
T COG5262 84 HLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSSKKGSK 127 (132)
T ss_pred HHHHHhcCcHHHHHHhhhheeecCCcccccChhhhhhhhccCCc
Confidence 99999999999999999999999999999999999998766443
No 11
>KOG1757 consensus Histone 2A [Chromatin structure and dynamics]
Probab=100.00 E-value=6.9e-40 Score=233.27 Aligned_cols=110 Identities=63% Similarity=0.909 Sum_probs=103.6
Q ss_pred CCCCCcCcccCcccchhhHHHHHhh-CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 14 KKATSRSSKAGLQFPVGRIARFLKA-GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 14 ~~~~s~s~Ra~L~fPvsri~r~Lk~-~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
.+.+++|.|+||||||+||+|.|+. .....||+..++||++++||||++||||+|+|.+++.+.+||||+|+++||+.|
T Consensus 18 ~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRGD 97 (131)
T KOG1757|consen 18 AKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 97 (131)
T ss_pred hhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecCc
Confidence 5788999999999999999999998 345689999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCceeeCCccCCCcccccCCCCCCC
Q 032772 93 EELSKLLGDVTIANGGVMPNIHNLLLPKKTGT 124 (134)
Q Consensus 93 ~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~ 124 (134)
+|||.|+ ..||+.|||+||||++|+.|++++
T Consensus 98 eELDtLI-k~TiagGgViPhihk~l~~k~~~~ 128 (131)
T KOG1757|consen 98 EELDTLI-KATIAGGGVIPHIHKSLINKKGKK 128 (131)
T ss_pred HHHHHHH-HHhhccCccccchHHHHhcccccc
Confidence 9999999 578999999999999999998654
No 12
>PLN00155 histone H2A; Provisional
Probab=99.87 E-value=6.3e-23 Score=130.91 Aligned_cols=58 Identities=86% Similarity=1.276 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHH
Q 032772 1 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL 60 (134)
Q Consensus 1 m~~~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl 60 (134)
|||+|++.+.. ++.+++|+||+|||||+||+|+|+++.++.||+.+|||||+||||||
T Consensus 1 msg~g~g~~~~--~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 1 MAGRGKGKTSG--KKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58 (58)
T ss_pred CCCCCCCCccc--cCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence 99998854322 56799999999999999999999999999999999999999999997
No 13
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=99.57 E-value=3.6e-15 Score=104.89 Aligned_cols=88 Identities=23% Similarity=0.393 Sum_probs=80.7
Q ss_pred cccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhc
Q 032772 21 SKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG 100 (134)
Q Consensus 21 ~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~ 100 (134)
.+-...||++|++++||.+.+.++|+..+||..+..||+|+.+|+.++++.|+..+.+|||.++|..|+.+|+.|++|-.
T Consensus 18 ~~~ktrFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~ 97 (113)
T COG5247 18 KKKKTRFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKN 97 (113)
T ss_pred hhhhhcCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHH
Confidence 36677899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CceeeCCc
Q 032772 101 DVTIANGG 108 (134)
Q Consensus 101 ~~~Ia~gg 108 (134)
...+-.+.
T Consensus 98 ~~~~~~~~ 105 (113)
T COG5247 98 MEQFKNRE 105 (113)
T ss_pred HHHhcCCC
Confidence 55554443
No 14
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.55 E-value=5.5e-15 Score=97.64 Aligned_cols=73 Identities=44% Similarity=0.590 Sum_probs=67.4
Q ss_pred CcccCcccchhhHHHHHhhCCcc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 20 SSKAGLQFPVGRIARFLKAGKYA-ERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 20 s~Ra~L~fPvsri~r~Lk~~~~~-~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
+.+..+.||+.|+.+-+..+.+. .||+..|.++|.+++||++.+|++.|++.|.+.++++|+|+||+.|++.|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 46678899999999999987666 49999999999999999999999999999999999999999999999865
No 15
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription]
Probab=99.40 E-value=4.2e-13 Score=105.11 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=77.4
Q ss_pred CcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHh
Q 032772 18 SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSK 97 (134)
Q Consensus 18 s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~ 97 (134)
++-.+-...||++||+++||.+...++|...+||.+...||.|+.+|+..++.++...+.++++++||..||.+|+.|+|
T Consensus 5 ~~~~~~~trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdF 84 (224)
T KOG1659|consen 5 SSFKKYKTRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDF 84 (224)
T ss_pred chhhhhhccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHH
Confidence 33445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc
Q 032772 98 LLG 100 (134)
Q Consensus 98 L~~ 100 (134)
|-.
T Consensus 85 Lk~ 87 (224)
T KOG1659|consen 85 LKE 87 (224)
T ss_pred HHH
Confidence 974
No 16
>PLN00035 histone H4; Provisional
Probab=99.33 E-value=1.7e-12 Score=91.98 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCCCCCCCCC-----CCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 032772 1 MAGRGKTLGS-----GAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75 (134)
Q Consensus 1 m~~~~~~~~~-----~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~ 75 (134)
|||+|++++. ..|.+++.+.+-++ +|.+.|.|+.+. ..+.|||.++-..|..+||.++.+|+..|..+|.+.
T Consensus 1 m~~~~k~~~g~g~~g~kr~~k~~~d~i~~--ipk~~IrRLARr-~GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA 77 (103)
T PLN00035 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARR-GGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCCCCCCCCCCCCcchHHHHHHHhhhcc--CCHHHHHHHHHH-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8999997653 13444455555566 888899999999 579999999999999999999999999999999999
Q ss_pred CCceechhhhhhhhcC
Q 032772 76 KKTRIVPRHIQLAVRN 91 (134)
Q Consensus 76 ~~k~Itp~hI~~AI~n 91 (134)
++++|+.+||.+|++.
T Consensus 78 ~RKTV~~~DV~~Alkr 93 (103)
T PLN00035 78 RRKTVTAMDVVYALKR 93 (103)
T ss_pred CCCcCcHHHHHHHHHH
Confidence 9999999999999863
No 17
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=99.23 E-value=3.3e-11 Score=77.95 Aligned_cols=64 Identities=23% Similarity=0.291 Sum_probs=58.1
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhh
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
.||+++|+|+|+.+....+|+.+|...++.+.|.|+.+|...|...|...++++|+++||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5999999999999767789999999999999999999999999999999999999999999875
No 18
>PTZ00015 histone H4; Provisional
Probab=99.14 E-value=8.8e-11 Score=83.11 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=72.6
Q ss_pred CCCCCCCCCCC------CCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032772 1 MAGRGKTLGSG------AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARD 74 (134)
Q Consensus 1 m~~~~~~~~~~------~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~ 74 (134)
|||++++++.- .+.++..+.+-.+ +|.+.|.|+.+. ..+.|||.++-..+..+||.++.+|+..|..+|.+
T Consensus 1 ~~~~~k~~~~~~~~g~~kr~rk~~r~~i~g--I~k~~IrRLarr-~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeH 77 (102)
T PTZ00015 1 MSGMGKGKKSLGAKGGQKRQKKVLRDNIRG--ITKGAIRRLARR-GGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEY 77 (102)
T ss_pred CCCcccCCCccccccchhhHHHHHhhcccC--CCHHHHHHHHHH-cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888875541 2223344444445 566789999999 68999999999999999999999999999999999
Q ss_pred CCCceechhhhhhhhc
Q 032772 75 NKKTRIVPRHIQLAVR 90 (134)
Q Consensus 75 ~~~k~Itp~hI~~AI~ 90 (134)
.++++|+.+||.+|++
T Consensus 78 A~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 78 ARRKTVTAMDVVYALK 93 (102)
T ss_pred cCCCcccHHHHHHHHH
Confidence 9999999999999975
No 19
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=98.99 E-value=7.5e-10 Score=76.94 Aligned_cols=69 Identities=29% Similarity=0.344 Sum_probs=63.1
Q ss_pred cccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 21 SKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 21 ~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
..-.+-+|+..|.|+|++ ....|||.+|...|..++|-++.+|.+.|...|.+.+|++|+++||++|+.
T Consensus 14 ~~~~~~Lp~apv~Ri~r~-~~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~ 82 (91)
T COG2036 14 RSTDLLLPKAPVRRILRK-AGAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALK 82 (91)
T ss_pred hhhhhhcCchHHHHHHHH-HhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 334566889999999999 567799999999999999999999999999999999999999999999984
No 20
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=98.96 E-value=2.3e-09 Score=70.12 Aligned_cols=64 Identities=23% Similarity=0.256 Sum_probs=60.7
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+|.+.|.|+.+. .++.||++++...|+..+||.+.+|+..|.+.+++.+|++++++||..|++
T Consensus 2 ~~p~~~i~ria~~-~Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAES-LGIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHH-CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 5899999999999 678999999999999999999999999999999999999999999999863
No 21
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=98.83 E-value=5.6e-09 Score=82.79 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=73.3
Q ss_pred CcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhh
Q 032772 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLL 99 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~ 99 (134)
.+.+|++||+++|+.+.++.-|+.+||+.++.+.|-|++|+..+||-.|..++|+++.-.||..|+...+-+++|+
T Consensus 107 ~h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLi 182 (286)
T COG5208 107 DHNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLI 182 (286)
T ss_pred hccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHh
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999
No 22
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=98.83 E-value=5.5e-09 Score=71.77 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=64.4
Q ss_pred CCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 16 ATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 16 ~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
++-+.+-+| +|.+.|.|+.+. .++.|||.++-..+..+||.++.+|+..|..++.+.++++|+++||.+|++.
T Consensus 5 ~~~~~~~~g--i~k~~I~RLarr-~GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 5 KVLRDNIKG--ITKPAIRRLARR-GGVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred HHHHHhhcc--CCHHHHHHHHHH-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 344444555 677789999999 5799999999999999999999999999999999999999999999999863
No 23
>smart00417 H4 Histone H4.
Probab=98.71 E-value=3.3e-08 Score=66.33 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=60.4
Q ss_pred CCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhh
Q 032772 17 TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLA 88 (134)
Q Consensus 17 ~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~A 88 (134)
+-+.+-.| +|.+.|.|+++. .++.|||.++-..+..+||.+..+|+..|..+|.+.++++|+.+||..|
T Consensus 6 ~~~d~i~g--I~k~~IrRLaRr-~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 6 VLRDNIQG--ITKPAIRRLARR-GGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred HHHhhhcC--CCHHHHHHHHHH-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 33444445 667789999999 5899999999999999999999999999999999999999999998754
No 24
>KOG1657 consensus CCAAT-binding factor, subunit C (HAP5) [Transcription]
Probab=98.67 E-value=1.6e-08 Score=81.01 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=78.4
Q ss_pred CCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHH
Q 032772 17 TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS 96 (134)
Q Consensus 17 ~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~ 96 (134)
.....-....||++||+++||.+.....|+.+|||.++.++|+|+.|+...++..+.+++|+++.-.||..++.+..-++
T Consensus 65 e~~~d~~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fd 144 (236)
T KOG1657|consen 65 EGQLDFKNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFD 144 (236)
T ss_pred ccccchhhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCcc
Confidence 34445566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC
Q 032772 97 KLLGD 101 (134)
Q Consensus 97 ~L~~~ 101 (134)
||...
T Consensus 145 FL~Di 149 (236)
T KOG1657|consen 145 FLRDI 149 (236)
T ss_pred ceecc
Confidence 99953
No 25
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.16 E-value=7e-06 Score=54.39 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=58.4
Q ss_pred chhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 28 PVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 28 Pvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
+-..+..++++-....|++.+|...|..++|-|+.+|++.|...|++.++++|.++||++++.++
T Consensus 3 ~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 3 TKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred cHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44567788888555689999999999999999999999999999999999999999999998765
No 26
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=98.01 E-value=1.6e-05 Score=57.43 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=56.5
Q ss_pred hHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 31 RIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 31 ri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
-|+++|++ .++.+++..++..|...++-++.+|+..|...|++.++++|+.+||++||..
T Consensus 6 ~v~~iLk~-~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~ 65 (117)
T cd07979 6 VIAAILKS-MGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQS 65 (117)
T ss_pred HHHHHHHH-CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 48899998 5788999999999999999999999999999999999999999999999964
No 27
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=97.82 E-value=3.8e-05 Score=53.18 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=74.2
Q ss_pred CCCCCCCCCCC-----CCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 032772 1 MAGRGKTLGSG-----AAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75 (134)
Q Consensus 1 m~~~~~~~~~~-----~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~ 75 (134)
|++|++++|.. ++.+++-+.+-.+++-|. |.|+-+. ....||+...--....++.-++.+++-.|.-.+.+.
T Consensus 1 Ms~r~~g~KG~~KG~AKrHRK~LsDnIqgitKpa--IRRlARr-~GVkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HA 77 (103)
T KOG3467|consen 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPA--IRRLARR-GGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_pred CCCcCccccccccchHHHHHHHHHhhccccchHH--HHHHHHh-cCcchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999998864 445566667777777887 8888888 578999998888899999999999999999999999
Q ss_pred CCceechhhhhhhhc
Q 032772 76 KKTRIVPRHIQLAVR 90 (134)
Q Consensus 76 ~~k~Itp~hI~~AI~ 90 (134)
++++||..|+-.+..
T Consensus 78 KRKTvT~~dvv~~LK 92 (103)
T KOG3467|consen 78 KRKTVTAMDVVYALK 92 (103)
T ss_pred hhceeeHHHHHHHHH
Confidence 999999999877764
No 28
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=97.69 E-value=0.00017 Score=47.38 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=49.4
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.||..-|+.+-.. -+...++.++.-.|+.=+||-+.||+..|.+...+.+|+++|++||+.|++
T Consensus 3 ~~~~esvk~iAes-~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAES-LGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHH-TT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 4677777766666 567789999999999999999999999999999999999999999999874
No 29
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=97.66 E-value=0.00015 Score=48.40 Aligned_cols=59 Identities=20% Similarity=0.144 Sum_probs=54.1
Q ss_pred HHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 32 IARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 32 i~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
|.++++. .++.+++.+|...|+.++|-++.+|.+.+-+.|.+.||+..++.||..|+.+
T Consensus 12 Vaqil~~-~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILES-AGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHH-cCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5667777 6889999999999999999999999999999999999999999999999743
No 30
>smart00428 H3 Histone H3.
Probab=97.57 E-value=0.00017 Score=51.40 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=58.7
Q ss_pred cCcccchhhHHHHHhh--CCc----ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKA--GKY----AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~--~~~----~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+|-+|-..|.|+.++ ..+ ..|++.+|...|-.+.|.++.++++.|...|.+.++.+|+|+|+++|.+
T Consensus 26 t~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~r 99 (105)
T smart00428 26 TDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARR 99 (105)
T ss_pred cccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHH
Confidence 4577888888888776 111 4599999999999999999999999999999999999999999998853
No 31
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=97.52 E-value=0.00021 Score=59.78 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=53.6
Q ss_pred hHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 31 RIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 31 ri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
-|+-+.+. .++.+++++|...|+..+||.+.+|++.|.+.+++.+|++++++||+.|++
T Consensus 4 ~i~~ia~~-~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~ 62 (343)
T cd08050 4 SIKLIAES-LGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALR 62 (343)
T ss_pred HHHHHHHH-cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 35555555 678899999999999999999999999999999999999999999999976
No 32
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=97.42 E-value=0.00062 Score=46.68 Aligned_cols=63 Identities=22% Similarity=0.400 Sum_probs=55.4
Q ss_pred cchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC---ceechhhhhhhhc
Q 032772 27 FPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKK---TRIVPRHIQLAVR 90 (134)
Q Consensus 27 fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~---k~Itp~hI~~AI~ 90 (134)
||-..++|++... ....++....+.|+++-..|+.||.|.|...-...+. ..|.|.||+.|.+
T Consensus 17 f~k~~iKr~~~~~-~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLIQSV-TGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 7777899999983 4589999999999999999999999999988876554 6899999999864
No 33
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=96.91 E-value=0.0026 Score=48.37 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=59.3
Q ss_pred ccchhhHHHHHhhC-CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAG-KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~-~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+|++-|-||||+. --..+|+.+|-..+--++-.|++=|.-.|...|...+||+|+.+||-+|+.
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 48999999999993 234699999999999999999999999999999999999999999999985
No 34
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=96.84 E-value=0.0028 Score=43.99 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=47.7
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK-KTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~-~k~Itp~hI~~AI~ 90 (134)
.||-+.|++++.......-|+....+.++++--.|+.||+|.|.......+ ...|+|.||+.|.+
T Consensus 23 ~~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r 88 (90)
T PF04719_consen 23 SFNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR 88 (90)
T ss_dssp ---HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 378888999999843337999999999999999999999999998887644 34799999998853
No 35
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=96.82 E-value=0.0013 Score=51.45 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=55.4
Q ss_pred cccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cceechhhhhhhhc
Q 032772 25 LQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK-KTRIVPRHIQLAVR 90 (134)
Q Consensus 25 L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~-~k~Itp~hI~~AI~ 90 (134)
.-||-+.|+++|..-. ..-|+..+.++++++-.-|+-||+|.|..+....+ ...+.|.||+.|.+
T Consensus 111 s~f~Ka~iKkL~~~it-g~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~r 176 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSSIT-GQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYR 176 (195)
T ss_pred hcCCHHHHHHHHHHHh-CCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 4599999999999943 33399999999999999999999999998887544 44699999999974
No 36
>PTZ00463 histone H2B; Provisional
Probab=96.69 E-value=0.01 Score=42.95 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=52.8
Q ss_pred hHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 31 RIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 31 ri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.|++.|++-.-..-|+..|.-.|...+.-++..|...|...|.-+++.+|++++|+.|++
T Consensus 33 YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr 92 (117)
T PTZ00463 33 YIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR 92 (117)
T ss_pred HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 699999985445578888988899989999999999999999999999999999999986
No 37
>smart00427 H2B Histone H2B.
Probab=96.60 E-value=0.0076 Score=41.79 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=53.2
Q ss_pred hHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 31 RIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 31 ri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.|+|.|++-.-..-|+..|.-.|...+..++..|...|...+.-+++.+|++++|+.|++
T Consensus 6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 588999985445579999999999999999999999999999999999999999999985
No 38
>PLN00158 histone H2B; Provisional
Probab=96.48 E-value=0.0096 Score=43.10 Aligned_cols=61 Identities=28% Similarity=0.290 Sum_probs=54.0
Q ss_pred hhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 30 GRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 30 sri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
..|++.|++-.-..-|+..|.-.|...+..++..|...|...+.-+++.+|++++|+.|++
T Consensus 31 ~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 31 IYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 4699999985445578888998999999999999999999999999999999999999986
No 39
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=96.34 E-value=0.0073 Score=51.92 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=46.5
Q ss_pred CCCCCcCcccCcccchhhHHHHHhhC----Cc-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhh
Q 032772 14 KKATSRSSKAGLQFPVGRIARFLKAG----KY-AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRH 84 (134)
Q Consensus 14 ~~~~s~s~Ra~L~fPvsri~r~Lk~~----~~-~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~h 84 (134)
.++.++-.-....+|.+.|++++..- .+ ..+|+.+|--.|..++|||+..|-+--.-+|+|.|||+|.+.|
T Consensus 339 ~~k~Skhgi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 339 QKKVSKHGIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp -------------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred ccCCCCCCCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 45677777778889999999998761 22 3699999999999999999999999999999999999999875
No 40
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=96.18 E-value=0.034 Score=37.34 Aligned_cols=48 Identities=23% Similarity=0.352 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHHHHHHHH---HHHHHhCCCceechhhhhhhhcCcHHH
Q 032772 48 GAPVYLAAVLEYLAAEVLELA---GNAARDNKKTRIVPRHIQLAVRNDEEL 95 (134)
Q Consensus 48 ~A~vyLaAvLEyl~~eILelA---~~~A~~~~~k~Itp~hI~~AI~nD~EL 95 (134)
-++-|++++.|.....+-.++ -..|++.||++|+++|+.+..+.++.|
T Consensus 26 ~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 26 VSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCCC
Confidence 467888888888777777666 456789999999999999999999876
No 41
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=96.18 E-value=0.015 Score=43.78 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=62.0
Q ss_pred ccCcccchhhHHHHHhhCCc-ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 22 KAGLQFPVGRIARFLKAGKY-AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 22 Ra~L~fPvsri~r~Lk~~~~-~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
--.+.+|-+-|..++++.-- ..||..+|-..|-.+.=||+.-|--.|..+|....+++|.|+|+-.|..|
T Consensus 8 dde~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 8 DDELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred cccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHH
Confidence 45788999999999999544 56999999999999988999999999999999999999999999999864
No 42
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=96.07 E-value=0.0062 Score=46.17 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=68.8
Q ss_pred CcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhh
Q 032772 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLL 99 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~ 99 (134)
-+++|++||+.+++.+-...-....+...++...|.++.+|-..++..+...+++++.-+++..||..-+||.++-
T Consensus 57 l~rLpL~rik~vvkl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~de~~fle 132 (162)
T KOG1658|consen 57 LSRLPLARIKQVVKLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVDEFAFLE 132 (162)
T ss_pred hhhccHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchHHHHHHh
Confidence 3689999999999996666677777888889999999999999999999999999999999999999999999888
No 43
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=95.98 E-value=0.034 Score=36.99 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=48.6
Q ss_pred chhhHHHHHhh--CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCce-echhhhhhh
Q 032772 28 PVGRIARFLKA--GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTR-IVPRHIQLA 88 (134)
Q Consensus 28 Pvsri~r~Lk~--~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~-Itp~hI~~A 88 (134)
|..-|.|+|+. ....-||+.+|...++..|+-|+.|-+-+|...|...+... |..+||+..
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki 64 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI 64 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 44567888875 23457999999999999999999999999999999988888 999999874
No 44
>PLN00160 histone H3; Provisional
Probab=95.80 E-value=0.022 Score=40.04 Aligned_cols=68 Identities=25% Similarity=0.232 Sum_probs=57.9
Q ss_pred cCcccchhhHHHHHhhC-----CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAG-----KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~-----~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+|-+|-..+.|+.++- ....|+..+|...|--+-|.++-.++|-+.-.|.+.++-+|.|.|++++.+
T Consensus 18 t~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~r 90 (97)
T PLN00160 18 TDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARR 90 (97)
T ss_pred hhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHH
Confidence 35777888888887761 123799999999999999999999999999999999999999999998853
No 45
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=95.75 E-value=0.033 Score=36.61 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=48.8
Q ss_pred hHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 31 RIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 31 ri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
++..++++-.-...+..++...|..+.+-|+..|+..|...|++.+..++.+.||+.....+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler~ 65 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLERN 65 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHhh
Confidence 46677777556779999999999999999999999999999999999999999999887643
No 46
>PTZ00018 histone H3; Provisional
Probab=95.64 E-value=0.026 Score=41.99 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=57.6
Q ss_pred CcccchhhHHHHHhhC----CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhh
Q 032772 24 GLQFPVGRIARFLKAG----KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~----~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
+|.+|-..|.|+.++- ....|+..+|...|--+-|.++-.++|.+...|.+.++-+|.|.|++++.
T Consensus 60 ~lLI~k~pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ 129 (136)
T PTZ00018 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
T ss_pred hhccccccHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHH
Confidence 5668888888888762 12469999999999999999999999999999999999999999999884
No 47
>PLN00161 histone H3; Provisional
Probab=95.53 E-value=0.037 Score=41.10 Aligned_cols=68 Identities=25% Similarity=0.232 Sum_probs=57.5
Q ss_pred cCcccchhhHHHHHhhC-----CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAG-----KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~-----~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+|-+|-..|.|+.++- ....|+..+|...|--+-|.++-.++|.+.-.|.+.++-+|.|.|++++.+
T Consensus 52 t~lLIpklPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~r 124 (135)
T PLN00161 52 TELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARR 124 (135)
T ss_pred cccccccccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHH
Confidence 34567778888887761 124699999999999999999999999999999999999999999998853
No 48
>PLN00121 histone H3; Provisional
Probab=95.52 E-value=0.03 Score=41.60 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=57.7
Q ss_pred CcccchhhHHHHHhhC----CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhh
Q 032772 24 GLQFPVGRIARFLKAG----KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~----~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
+|.+|-..|.|+.++- ....|+..+|...|--+-|.++-.++|.+.-.|.+.++-+|.|.|++++.
T Consensus 60 ~lLI~k~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~ 129 (136)
T PLN00121 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
T ss_pred ccccccccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHH
Confidence 5668888888888761 12469999999999999999999999999999999999999999999884
No 49
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=95.32 E-value=0.065 Score=35.30 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=51.5
Q ss_pred HHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 32 IARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 32 i~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
|.++++. .++..++.+|...|+.++..++.+|...+-..|...+|...++.|+..|..
T Consensus 12 va~il~~-~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 12 VAQILKH-AGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred HHHHHHH-cCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3456666 678899999999999999999999999999999999999999999998873
No 50
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=95.11 E-value=0.067 Score=41.01 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=58.5
Q ss_pred cCcccchhhHHHHHhhCCcc---cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAGKYA---ERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~~~~---~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.-|-||.+-|-|+.++ ..- .-|+.+|...|+..---|+..++-.|.+.|+++++++|++.|+-.|+.
T Consensus 7 ~dl~lP~AiI~rlvke-~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKE-VLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHHH-hCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 3577999999999887 233 458889999999999999999999999999999999999999999884
No 51
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=95.05 E-value=0.091 Score=38.64 Aligned_cols=61 Identities=20% Similarity=0.111 Sum_probs=41.6
Q ss_pred hhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 29 VGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 29 vsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
+--|+.+|++. +.......++.-|--..--++.+||+-|-.+|.+.++..|+..|+++||.
T Consensus 15 a~~i~~iL~~~-Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~ 75 (129)
T PF02291_consen 15 ARVIHLILKSM-GVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQ 75 (129)
T ss_dssp HHHHHHHHHHT-T---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH
T ss_pred HHHHHHHHHHc-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHH
Confidence 34577888883 33333444444444444446889999999999999999999999999997
No 52
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.67 E-value=0.13 Score=41.84 Aligned_cols=66 Identities=11% Similarity=0.214 Sum_probs=59.9
Q ss_pred cchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 27 FPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 27 fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
+-.-+++-++++-.....+..++-.+|.-+.+-|+..|+..|+..|++.+..+|..+||++.++++
T Consensus 155 l~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~ 220 (258)
T KOG1142|consen 155 LSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERN 220 (258)
T ss_pred ccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeecc
Confidence 445678888888666789999999999999999999999999999999999999999999999888
No 53
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=93.49 E-value=0.4 Score=35.30 Aligned_cols=65 Identities=25% Similarity=0.214 Sum_probs=50.5
Q ss_pred cCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
-+..++| +|.|++-.-..-|+..+.-.+.+.+-.++..|+..|+..|.-+++.+|+.++|+.|++
T Consensus 37 e~~s~yv---~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 37 ESYSEYV---YKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred Cceeeeh---hhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHH
Confidence 3344444 4466662222348888888888888888999999999999999999999999999874
No 54
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=92.83 E-value=0.13 Score=38.36 Aligned_cols=63 Identities=29% Similarity=0.308 Sum_probs=51.6
Q ss_pred chhhHHH-HHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 28 PVGRIAR-FLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 28 Pvsri~r-~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
|-.|+-| +.++..-..|+.++|...|--+.|.++-.++|-+.-.|.+.++-+|.|.||++|..
T Consensus 68 PFqRlvrei~q~f~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArr 131 (137)
T KOG1745|consen 68 PFQRLVREIAQDFKTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 131 (137)
T ss_pred cHHHHhHHHHhcccccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhh
Confidence 3334444 33444445799999999999999999999999999999999999999999999864
No 55
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=92.68 E-value=0.14 Score=35.32 Aligned_cols=64 Identities=11% Similarity=0.058 Sum_probs=20.0
Q ss_pred HHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHH
Q 032772 33 ARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS 96 (134)
Q Consensus 33 ~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~ 96 (134)
..+|---.+...-..++..++-.++--.+.+++..|.+.|...|+++|+++|+..++++|+.--
T Consensus 8 ~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl 71 (93)
T PF02269_consen 8 RQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKL 71 (93)
T ss_dssp HHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHH
Confidence 3444432333444455666666665555667777777888888888999999999999998643
No 56
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=91.79 E-value=0.9 Score=31.42 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=40.4
Q ss_pred HHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHH
Q 032772 32 IARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEEL 95 (134)
Q Consensus 32 i~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL 95 (134)
|..+|---.+...-..++..++-.++--++.+++-.|...|. .++.+|+++|+..+|++|+.=
T Consensus 8 i~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~K 70 (92)
T cd07978 8 IRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPKK 70 (92)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHHH
Confidence 445554422333333445555555555555666667777776 566778999999999999864
No 57
>PLN00163 histone H4; Provisional
Probab=87.28 E-value=0.21 Score=32.05 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=32.9
Q ss_pred CCCCCCCCCC-----CCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCc
Q 032772 1 MAGRGKTLGS-----GAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAG 48 (134)
Q Consensus 1 m~~~~~~~~~-----~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~ 48 (134)
|+|+||++|. +.|.+++.+.+-.+++-|. |.|+-+. ..+.|||..
T Consensus 1 m~g~gkggkglGkggaKRhrk~lrd~i~gItKpa--IrRLARR-gGVKRIs~~ 50 (59)
T PLN00163 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPA--IRRLARR-GGVKRISGL 50 (59)
T ss_pred CCCCCCCCCccCCccchhHHHHHHHhhcccchHH--HHHHHHh-cCceeecch
Confidence 8999998663 2445555666667777776 9999888 578899874
No 58
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=83.82 E-value=4.5 Score=29.89 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=48.4
Q ss_pred hhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceech---hhhhhhhcCc
Q 032772 29 VGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVP---RHIQLAVRND 92 (134)
Q Consensus 29 vsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp---~hI~~AI~nD 92 (134)
|--||-+|.. ....-.+...+.-|-..---.+..+|+-|.-+|++.|+..|++ +|+++|+..-
T Consensus 17 vrlihliL~S-lgi~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 17 VRLIHLILRS-LGIEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred hhHHHHHHHh-cCchhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 3447777777 4555556667766665556678999999999999999988888 9999998643
No 59
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.49 E-value=7.1 Score=29.39 Aligned_cols=56 Identities=27% Similarity=0.323 Sum_probs=43.2
Q ss_pred HHHHHhhCCcccccCCchHHHHHHHHHH---HHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 32 IARFLKAGKYAERVGAGAPVYLAAVLEY---LAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 32 i~r~Lk~~~~~~RVs~~A~vyLaAvLEy---l~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
|+.+|++- + |.+.-+-.+.-.||+ .+..||+-|.=++.+.++..|..+|+++||..
T Consensus 19 i~~iL~s~-G---I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~ 77 (148)
T KOG3334|consen 19 IASILKSL-G---IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQM 77 (148)
T ss_pred HHHHHHHc-C---ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 77778772 2 444445555666666 56789999999999999999999999999964
No 60
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=79.83 E-value=6.7 Score=29.11 Aligned_cols=66 Identities=17% Similarity=0.269 Sum_probs=44.3
Q ss_pred CcccchhhHHHHHhhC--CcccccCCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 24 GLQFPVGRIARFLKAG--KYAERVGAG-APVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~--~~~~RVs~~-A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
++.+|-+-|..+..+. .. .-+..+ --+++-+++||+. -+--.|...|.+..+++|.++|+-.|..|
T Consensus 9 e~sLPKATVqKMvS~iLp~d-l~ftKearei~in~cieFi~-~lsseAne~ce~EaKKTIa~EHviKALen 77 (148)
T COG5150 9 ENSLPKATVQKMVSSILPKD-LVFTKEAREIFINACIEFIN-MLSSEANEACEEEAKKTIAYEHVIKALEN 77 (148)
T ss_pred cccCcHHHHHHHHHHhcccc-ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 5678888887776651 11 123333 3567777777663 44455667777778899999999999865
No 61
>PF15510 CENP-W: Centromere kinetochore component W
Probab=77.20 E-value=6.4 Score=27.59 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=46.6
Q ss_pred CcccchhhHHHHHhhCCcccccCCchHHH--------------HHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhh
Q 032772 24 GLQFPVGRIARFLKAGKYAERVGAGAPVY--------------LAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~~~~~RVs~~A~vy--------------LaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
.-.-|-|.++|+++.-.-..|+..++-.. +.--.=.|+..+.|.|-.-|.+++-..|.++|+..|.
T Consensus 14 krkaPrgfLkrv~Kr~KphlRl~~~~Dllv~~~~f~~~~~~~~vhLncLLFvhrLAEEaRtnA~EnK~~~Ik~~Hv~Aaa 93 (102)
T PF15510_consen 14 KRKAPRGFLKRVFKRQKPHLRLETSGDLLVRFCPFSGWQWGGEVHLNCLLFVHRLAEEARTNACENKCGTIKKEHVLAAA 93 (102)
T ss_pred HHhCchHHHHHHHHhcCCceeecccccHHHhhcccccccccceeehhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 33578999999999756677887755443 1111123557788888777777788899999998775
No 62
>COG5251 TAF40 Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=74.33 E-value=3.9 Score=31.77 Aligned_cols=64 Identities=17% Similarity=0.243 Sum_probs=52.0
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK-KTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~-~k~Itp~hI~~AI~ 90 (134)
-||-..|+.+.-. ...+-|+....++|.++-.-|+.||+|+|..+-..-+ .....|.|++.|++
T Consensus 115 ~lnKt~VKKlast-V~nQtVspNi~I~l~g~~KVfvGEiIElA~~Vq~~w~~sgpl~p~h~reayr 179 (199)
T COG5251 115 SLNKTQVKKLAST-VANQTVSPNIRIFLQGVGKVFVGEIIELAMIVQNKWLTSGPLIPFHKREAYR 179 (199)
T ss_pred CCCHHHHHHHHHH-HhccccCCCeeeeeechhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHH
Confidence 4677778877776 5678899999999999999999999999977665433 33689999999885
No 63
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=73.50 E-value=11 Score=34.08 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=51.6
Q ss_pred HHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 33 ARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 33 ~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+.+-+.-+...++.+|+-.|+-=+||=+.||...|.+.-.+.+|.+.|-.||..|++
T Consensus 17 ~k~vAEslGi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr 74 (576)
T KOG2549|consen 17 VKVVAESLGITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALR 74 (576)
T ss_pred HHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHh
Confidence 3444454667889999999999999999999999999999999999999999999986
No 64
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=73.27 E-value=2.8 Score=24.63 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=25.3
Q ss_pred HHHHHHhCCCceechhhhhhhhcCcH--HHHhhhc
Q 032772 68 AGNAARDNKKTRIVPRHIQLAVRNDE--ELSKLLG 100 (134)
Q Consensus 68 A~~~A~~~~~k~Itp~hI~~AI~nD~--EL~~L~~ 100 (134)
|-+.|...+...|+|+||-+|+-.++ .+..++.
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~ 35 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILK 35 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHH
Confidence 45678888999999999999987765 6666664
No 65
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=70.04 E-value=9.7 Score=28.44 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhcCceeeCCccCCCccccc
Q 032772 50 PVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLL 117 (134)
Q Consensus 50 ~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~ 117 (134)
.+++++++-++++++++.-.+.-.+. ++. +.++ +..|| +|+.|.++
T Consensus 5 ~~l~~a~~a~~~AQ~iK~~~~~~~~r---~~d--------------~~~~----~~sGG-MPSSHSA~ 50 (141)
T PF02681_consen 5 KVLIAALIAWFIAQFIKVFINYLKER---KWD--------------WRRF----FSSGG-MPSSHSAT 50 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhC---ccc--------------HHHH----hhcCC-CCchHHHH
Confidence 57899999999999999988877551 111 1222 45566 99999875
No 66
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=65.62 E-value=22 Score=30.12 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=55.2
Q ss_pred cccCcccch---hhHHHHHhh----CCcccccCCchHHHHHHHHHHHH------HHHHHHHHHHHHhCCCceechhhhhh
Q 032772 21 SKAGLQFPV---GRIARFLKA----GKYAERVGAGAPVYLAAVLEYLA------AEVLELAGNAARDNKKTRIVPRHIQL 87 (134)
Q Consensus 21 ~Ra~L~fPv---sri~r~Lk~----~~~~~RVs~~A~vyLaAvLEyl~------~eILelA~~~A~~~~~k~Itp~hI~~ 87 (134)
...++.||. ..++-+|++ +-....++.++.-+.++...+-. .++|..|++.|...+...+++.|+..
T Consensus 181 ~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~ 260 (366)
T COG1474 181 GPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVRE 260 (366)
T ss_pred CcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHH
Confidence 334477887 677778865 22345778888777776655543 68999999999999999999999999
Q ss_pred hhcCcHHHH
Q 032772 88 AVRNDEELS 96 (134)
Q Consensus 88 AI~nD~EL~ 96 (134)
| ..+.|..
T Consensus 261 a-~~~~~~~ 268 (366)
T COG1474 261 A-QEEIERD 268 (366)
T ss_pred H-HHHhhHH
Confidence 9 3444433
No 67
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=58.26 E-value=36 Score=29.21 Aligned_cols=51 Identities=27% Similarity=0.207 Sum_probs=47.4
Q ss_pred CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 40 KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 40 ~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
-+...|..++.-.|+-=|||=+.||.+.|.+.-.+++|..+|-.||..|.+
T Consensus 18 lGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr 68 (450)
T COG5095 18 LGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALR 68 (450)
T ss_pred cCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHH
Confidence 566789999999999999999999999999999999999999999999876
No 68
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.20 E-value=17 Score=27.46 Aligned_cols=47 Identities=32% Similarity=0.492 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccC
Q 032772 50 PVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLL 118 (134)
Q Consensus 50 ~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~ 118 (134)
-+++++++-++.+++++.....-.+.+.. . .++ .+-|| +|+.|.++.
T Consensus 11 ~~llsal~a~~~AQvIKv~I~~~~~rk~~---~--------------~~~----~sTGG-MPSsHSA~V 57 (153)
T COG1963 11 TPLLSALVAILLAQVIKVLIELIRTRKLN---V--------------TLL----FSTGG-MPSSHSALV 57 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccc---c--------------eee----eecCC-CCchHHHHH
Confidence 36889999999999998887655543321 1 122 45555 999998763
No 69
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=56.75 E-value=14 Score=22.10 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhCCCceechhhhhhh
Q 032772 62 AEVLELAGNAARDNKKTRIVPRHIQLA 88 (134)
Q Consensus 62 ~eILelA~~~A~~~~~k~Itp~hI~~A 88 (134)
..+=..+-..|.+.|...||++++..|
T Consensus 18 ~~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 18 KKLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp HHHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 444556677889999999999999765
No 70
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=54.80 E-value=8.7 Score=23.98 Aligned_cols=21 Identities=43% Similarity=0.784 Sum_probs=16.8
Q ss_pred CcHHHHhhhcCceeeCCccCCCcc
Q 032772 91 NDEELSKLLGDVTIANGGVMPNIH 114 (134)
Q Consensus 91 nD~EL~~L~~~~~Ia~ggv~p~~~ 114 (134)
.|+||+.+++.. .+||++.|-
T Consensus 16 s~eELd~ilGg~---g~Gv~~Tis 36 (51)
T PF04604_consen 16 SDEELDQILGGA---GNGVIKTIS 36 (51)
T ss_pred CHHHHHHHhCCC---CCCceeecc
Confidence 799999999754 778888664
No 71
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=53.28 E-value=24 Score=26.91 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=51.8
Q ss_pred cCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhh
Q 032772 23 AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLL 99 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~ 99 (134)
+...||++.++++-+.+-...--+..|-+..+...|.|+.-+..++. ..-.+..-.-|+..+..|++|..+-
T Consensus 8 ~~p~~p~ekvkkiak~dPey~~te~~a~~etafatE~fvq~lv~~p~-----a~l~rLpL~rik~vvkl~pdl~l~~ 79 (162)
T KOG1658|consen 8 CSPKLPMEKVKKIAKNDPEYMDTEDDAFVETAFATEQFVQVLVHLPQ-----ASLSRLPLARIKQVVKLDPDLTLLN 79 (162)
T ss_pred hCccccHHHHHHhhcCCchhhhcccchHHHHHHHHHHHHhhhhhhhh-----hhhhhccHHHHHhhccCCcchhhhh
Confidence 34569999999998885444445566777888899999888887554 2334567777788888888776554
No 72
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=51.73 E-value=20 Score=24.63 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=42.7
Q ss_pred CcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHH------HHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYL------AAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl------~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
+=++|-..+.++ -.++..+-.+|-.+++-+ ..-||.+|.-+|.-.+...|++.||..|+.
T Consensus 29 Na~l~~~~l~~~-------~~l~~~~~~~l~~~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 29 NAQLPGEELRKY-------CPLSSEAKKLLEQAAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred cccCCHHHHHhH-------cCCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 344555545433 244555666666666654 347999999999999999999999999874
No 73
>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]
Probab=51.50 E-value=30 Score=29.18 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=66.2
Q ss_pred HHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc----CcHHHHhhhcCceee--
Q 032772 32 IARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR----NDEELSKLLGDVTIA-- 105 (134)
Q Consensus 32 i~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~----nD~EL~~L~~~~~Ia-- 105 (134)
|..++++ .++.-|+..|-.-|.-+|.-.+.+|...+-|++...||.--|+.||.+... +=..|...|++-.++
T Consensus 11 V~~Ll~~-~gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~v~sL~~~~q~~~~sl~ 89 (323)
T KOG4336|consen 11 VSNLLKT-KGFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIKVSSLYAYFQKQEFSLW 89 (323)
T ss_pred HHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCChhhhHHHHHhccchhh
Confidence 4445555 678889999999999999999999999999999999999999999988764 335677777776663
Q ss_pred -CCccCCCcccc
Q 032772 106 -NGGVMPNIHNL 116 (134)
Q Consensus 106 -~ggv~p~~~~~ 116 (134)
.--.+|++...
T Consensus 90 ~~~~~aP~~~~q 101 (323)
T KOG4336|consen 90 SVLIAAPENQEQ 101 (323)
T ss_pred hccccCCCcCCc
Confidence 55556765554
No 74
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=50.60 E-value=58 Score=26.47 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=42.7
Q ss_pred cccch---hhHHHHHhhC----CcccccCCchHHHHHHHHHH------HHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 25 LQFPV---GRIARFLKAG----KYAERVGAGAPVYLAAVLEY------LAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 25 L~fPv---sri~r~Lk~~----~~~~RVs~~A~vyLaAvLEy------l~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
+.||. ..+..+|+.. ....-++.++.-+++.+.+. .+..++..|...|...+...|+++|++.|+.
T Consensus 194 i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~ 272 (365)
T TIGR02928 194 IIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQE 272 (365)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45553 3455666541 11223666666677666552 3456788888888887888999999998764
No 75
>PF09123 DUF1931: Domain of unknown function (DUF1931); InterPro: IPR015207 This entry represents a set of hypothetical bacterial proteins containing a core of six alpha-helices, where one central helix is surrounded by the other five. The exact function of this family has not, as yet, been determined []. ; PDB: 1WWS_A 1WWI_A 1R4V_A.
Probab=49.11 E-value=13 Score=27.80 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=36.7
Q ss_pred HHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhh
Q 032772 33 ARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLA 88 (134)
Q Consensus 33 ~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~A 88 (134)
+++++.. -.--|..+-.--+..+++--+.+++..|..-|+.+||..|.|.||-+.
T Consensus 2 e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~ngRdvI~~~DLPIT 56 (138)
T PF09123_consen 2 ERLFRKA-AGLDVDKNDAKRYSDFVEKKLYDLLLVAQENAKANGRDVIEPRDLPIT 56 (138)
T ss_dssp HHHHHHH-HS----HHHHHHHHHHHHHHHHHCCCCHHHHHHHTT-SEE-GGGS---
T ss_pred hHHHHHH-hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeccccCCcc
Confidence 4556552 223445556666778888889999999999999999999999998653
No 76
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=47.70 E-value=66 Score=26.48 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=43.2
Q ss_pred Ccccc---hhhHHHHHhhC---C-cccccCCchHHHHHHHHHHH------HHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 24 GLQFP---VGRIARFLKAG---K-YAERVGAGAPVYLAAVLEYL------AAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 24 ~L~fP---vsri~r~Lk~~---~-~~~RVs~~A~vyLaAvLEyl------~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+.|| ...+..+|+.. . ...-++.++.-+++...... +..++..|...|...+...|+++|++.|+.
T Consensus 201 ~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 201 EIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 34554 35566666541 1 11246666766666655431 235677777778777888999999998886
Q ss_pred C
Q 032772 91 N 91 (134)
Q Consensus 91 n 91 (134)
.
T Consensus 281 ~ 281 (394)
T PRK00411 281 K 281 (394)
T ss_pred H
Confidence 3
No 77
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]
Probab=47.21 E-value=28 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhC-CCceechhhhhhhhcCcHH
Q 032772 59 YLAAEVLELAGNAARDN-KKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 59 yl~~eILelA~~~A~~~-~~k~Itp~hI~~AI~nD~E 94 (134)
+++..|.++ .+.|... ++-++.-+|+..+|+.|+-
T Consensus 39 iV~~Yi~el-t~~a~~~g~rgk~~veD~~f~lRkDpk 74 (109)
T KOG3901|consen 39 IVLEYITEL-THAAMEIGKRGKVKVEDFKFLLRKDPK 74 (109)
T ss_pred HHHHHHHHH-HHHHHHhcccCceeHHHHHHHHHhChH
Confidence 333344444 4444443 3446899999999999975
No 78
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.32 E-value=59 Score=29.97 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHH
Q 032772 62 AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS 96 (134)
Q Consensus 62 ~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~ 96 (134)
..|+..|+..|...+++-|+++|++.|+++.....
T Consensus 369 ~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~e 403 (647)
T COG1067 369 GNLVREAGDIAVSEGRKLITAEDVEEALQKRELRE 403 (647)
T ss_pred HHHHHHhhHHHhcCCcccCcHHHHHHHHHhhhhHH
Confidence 35677899999999999999999999999854443
No 79
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=41.96 E-value=52 Score=26.15 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=32.5
Q ss_pred hhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 032772 30 GRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNA 71 (134)
Q Consensus 30 sri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~ 71 (134)
.|+..+..+... .=|+.+++.+|..+||+++.+||+-+...
T Consensus 210 ~Rm~~ia~e~GL-~gvs~~~a~ll~~ale~~LK~lI~s~l~~ 250 (252)
T PF12767_consen 210 KRMEQIAWEHGL-GGVSDDCANLLNLALEVHLKNLIKSCLDL 250 (252)
T ss_pred HHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555333 78999999999999999999999987654
No 80
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=41.24 E-value=70 Score=25.60 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=33.8
Q ss_pred CCcCcccCcccchhhHHHHHhhC---CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 032772 17 TSRSSKAGLQFPVGRIARFLKAG---KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75 (134)
Q Consensus 17 ~s~s~Ra~L~fPvsri~r~Lk~~---~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~ 75 (134)
..++....+.|....+.+.|++- .....+..+...||+.++|.-+.+|++-+...|.+-
T Consensus 34 ~~~~~~~~~fL~~~~L~~~i~~i~~~~g~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR 95 (264)
T PF05236_consen 34 VVQSEKEEPFLNPSPLQKRIQKIAKKHGLKSVDEDVLELLSLATEERLRNLIEKAIVLSRHR 95 (264)
T ss_dssp ----------S-HHHHHHHHHHHHHCTT--EE-TCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred hhcccccccccCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666778888888888761 234579999999999999999999999999999763
No 81
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=40.44 E-value=30 Score=30.77 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
+.+||..|...|...+...|+..||+.||.
T Consensus 475 l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~ 504 (509)
T PF13654_consen 475 LADLLREANYWARKEGAKVITAEHVEQAIE 504 (509)
T ss_dssp HHHHHHHHHHHHHHCT-SSB-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 378889999999999999999999999986
No 82
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=39.16 E-value=32 Score=24.28 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=36.8
Q ss_pred CCchHHHHHHHHHH-----HHH--HHHHHHHHHHHhCCCceechhhhhhhhc--CcHHHHhhhc
Q 032772 46 GAGAPVYLAAVLEY-----LAA--EVLELAGNAARDNKKTRIVPRHIQLAVR--NDEELSKLLG 100 (134)
Q Consensus 46 s~~A~vyLaAvLEy-----l~~--eILelA~~~A~~~~~k~Itp~hI~~AI~--nD~EL~~L~~ 100 (134)
.+.+.+||.++||- +++ -++..+...++-..+..++.++|-.+.+ .++.|+.++.
T Consensus 20 ee~ia~yL~~~le~~d~a~i~~alg~var~~GMsqvA~~aGlsRe~LYkaLS~~GNPtf~Til~ 83 (100)
T COG3636 20 EEAIAAYLNAALEEGDPALIAAALGVVARSRGMSQVARKAGLSREGLYKALSPGGNPTFDTILA 83 (100)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCHHHHHHHhCccHHHHHHHhCCCCCCcHHHHHH
Confidence 45678899999874 322 2334444444444555689999999987 5788888773
No 83
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=38.02 E-value=38 Score=31.60 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhcC
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGD 101 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~~ 101 (134)
+.++|+.|.+.|...+...|+|+||-+++-.+.++..++..
T Consensus 6 ~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~ 46 (758)
T PRK11034 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (758)
T ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHH
Confidence 56788899999999999999999999999988877777753
No 84
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=35.78 E-value=1.2e+02 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 62 AEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 62 ~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
..|+..|...|...+...|+.+|++.|+..
T Consensus 361 ~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 361 GGLVRAAGDIAKSSGKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 467777877888788889999999998763
No 85
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=33.89 E-value=36 Score=23.47 Aligned_cols=55 Identities=35% Similarity=0.487 Sum_probs=33.7
Q ss_pred hhHHHHHhhCCc---ccccCCchHHHHHHHHHHHHHH-HHHHHHHHHHhCCCceechhhhhhhh
Q 032772 30 GRIARFLKAGKY---AERVGAGAPVYLAAVLEYLAAE-VLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 30 sri~r~Lk~~~~---~~RVs~~A~vyLaAvLEyl~~e-ILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
.++.|+|-.+.. .-|-...-|.||++||+||+.+ -.-++. |.. ..|.|+.+..|-
T Consensus 22 e~l~rFLa~TG~~p~~LR~~a~dp~FL~~VLdFl~~de~~l~af--~~a---~~~~p~~v~~Ar 80 (88)
T PF12096_consen 22 ERLPRFLALTGLSPDDLRAAAGDPAFLAAVLDFLLMDEAWLLAF--CDA---AGIPPEAVAAAR 80 (88)
T ss_pred HHHHHHHHHhCCCHHHHHHHccChHHHHHHHHHHHcchHHHHHH--HHH---cCcChhHHHHHH
Confidence 456677765322 2477777899999999999863 222222 222 235677766553
No 86
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=32.60 E-value=1.5e+02 Score=22.89 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=45.6
Q ss_pred CCcCcccCcccchhhHHHHHhh---CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 032772 17 TSRSSKAGLQFPVGRIARFLKA---GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75 (134)
Q Consensus 17 ~s~s~Ra~L~fPvsri~r~Lk~---~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~ 75 (134)
..++..-...|....+.+.|.. .....-|+.+...+|+.++|..+..|++.+...+.+-
T Consensus 35 ~~~~~~~~~fl~~~~l~~~~~~i~~~~g~~~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR 96 (212)
T cd08045 35 RARSQKDPSFLNPSPLAKKIRKIAKKHGLKEVDEDVLDLISLALEERLRNLLEKLIEVSEHR 96 (212)
T ss_pred cccccchhhccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666677887777777765 1223378999999999999999999999999988763
No 87
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=31.99 E-value=1.1e+02 Score=24.00 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=40.3
Q ss_pred chhhHHHHHhh--CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH
Q 032772 28 PVGRIARFLKA--GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 28 Pvsri~r~Lk~--~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E 94 (134)
....+.+|+++ ......|+.++..+|...+..=+..+.-..-+.+.-.+.+.||.+||+..+..+.+
T Consensus 112 ~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~ 180 (302)
T TIGR01128 112 KEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSAR 180 (302)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhc
Confidence 34556666655 23455799999999988876433322222222222223336999999988875554
No 88
>PHA02943 hypothetical protein; Provisional
Probab=31.98 E-value=89 Score=23.97 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhcC
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGD 101 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~~ 101 (134)
+.+++..-+..-..++.+-|+|.++..-|..|.|-..+|..
T Consensus 76 v~~~~Relwrlv~s~~~kfi~p~~l~~li~kd~~a~~~~ak 116 (165)
T PHA02943 76 VFEIKRELWRLVCNSRLKFITPSRLLRLIAKDTEAHNIFAK 116 (165)
T ss_pred HHHHHHHHHHHHHhccccccChHHHHHHHHhCHHHHHHHHH
Confidence 66777777888888899999999999999999999999953
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=30.78 E-value=55 Score=30.08 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhc
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG 100 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~ 100 (134)
+..+|..|-+.|...+...|+|+||-+++-.+++...++.
T Consensus 5 a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~ 44 (731)
T TIGR02639 5 LERILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILE 44 (731)
T ss_pred HHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHH
Confidence 3567889999999999999999999999988776555554
No 90
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=25.27 E-value=1.1e+02 Score=25.87 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhh
Q 032772 56 VLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLL 99 (134)
Q Consensus 56 vLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~ 99 (134)
.++|+..|+-++.-..-+..|+ +|+++.|+.||..-.+...++
T Consensus 136 ~~~Y~~~el~~l~~~LE~~~G~-~it~e~L~~aI~~~N~~R~~~ 178 (380)
T TIGR02263 136 GGEFYTAELNELCEGLEHLSGK-KITDDAIRASIAVFNDNRKLI 178 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 3888888888888777766665 799999999998776665555
No 91
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [].
Probab=24.23 E-value=73 Score=23.99 Aligned_cols=84 Identities=17% Similarity=0.285 Sum_probs=48.3
Q ss_pred ccCcccchhhHHHHHhhCCcccccCCchHH-HHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhc
Q 032772 22 KAGLQFPVGRIARFLKAGKYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG 100 (134)
Q Consensus 22 Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~v-yLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~ 100 (134)
..++..|+.-+-++++. -...+++...+. ++..+-|.|..-..-+.... .....|.-|..|..
T Consensus 22 g~~l~~~iEdlN~lv~~-~i~~~~~~~~~~~~~~dl~elL~tg~~~L~~~l---------------~~~~~~~~l~rL~e 85 (158)
T PF08539_consen 22 GERLRLPIEDLNELVRF-HIKLCIQSFPPSYFLEDLEELLTTGMYILENQL---------------NEVPDNRLLKRLVE 85 (158)
T ss_pred CCCCCcCHHHHHHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH---------------hhcchhHHHHHHHH
Confidence 34566888777777754 122244444333 33344444444443333222 22234555666666
Q ss_pred CceeeCCccCCCcccccCCCC
Q 032772 101 DVTIANGGVMPNIHNLLLPKK 121 (134)
Q Consensus 101 ~~~Ia~ggv~p~~~~~~~~~k 121 (134)
-|.+..+.|+|.+...++|=.
T Consensus 86 iW~~Ff~~VlP~lqavFlPLq 106 (158)
T PF08539_consen 86 IWQFFFTQVLPYLQAVFLPLQ 106 (158)
T ss_pred HHHHHhcchHHHHHHHHhhhH
Confidence 677788999999999988866
No 92
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.18 E-value=49 Score=31.68 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhcCceeeCC
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANG 107 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~~~~Ia~g 107 (134)
++.+|..|...|...|.-.+||.|+-.++-.++ ..++..+.+..+
T Consensus 16 Aa~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~--t~~lr~ac~~~~ 60 (898)
T KOG1051|consen 16 AATVLKQAVTEARRRGHAQVTPLHVASTLLSSP--TGILRRACIKSH 60 (898)
T ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCC--chHHHHHHHhcC
Confidence 357899999999999999999999999988776 566655555554
No 93
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=24.13 E-value=1.8e+02 Score=23.29 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=37.5
Q ss_pred chhhHHHHHhh--CCcccccCCchHHHHHHHHHH----HHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH
Q 032772 28 PVGRIARFLKA--GKYAERVGAGAPVYLAAVLEY----LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 28 Pvsri~r~Lk~--~~~~~RVs~~A~vyLaAvLEy----l~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E 94 (134)
+-..+..|++. ......|+.+|..+|...+.. +..|+-.++.- .+...||.++|+..+..+.+
T Consensus 147 ~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~----~~~~~It~~~I~~~i~~~~~ 215 (340)
T PRK05574 147 KEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALL----YPDGKITLEDVEEAVPDSAR 215 (340)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhh----cCCCCCCHHHHHHHHhhhhc
Confidence 34455555544 123457999999998877654 33344444322 22223999999988776554
No 94
>PHA02669 hypothetical protein; Provisional
Probab=23.87 E-value=1e+02 Score=24.04 Aligned_cols=48 Identities=31% Similarity=0.425 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhcCceeeCC
Q 032772 49 APVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANG 107 (134)
Q Consensus 49 A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~~~~Ia~g 107 (134)
|.+||+++.=||+.||=- |..-| +++.|+...-- .|..-+++.++.++
T Consensus 12 avi~LTgAaiYlLiEiGL-AaERa--nKrsRvK~nMR--------kLatQLGnGt~~S~ 59 (210)
T PHA02669 12 AVIYLTGAAIYLLIEIGL-AAERA--NKRSRVKANMR--------KLATQLGNGTLDST 59 (210)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHh--hhHHHHHHHHH--------HHHHHhcCCccccc
Confidence 678999999999888743 33322 33444443333 33444556665553
No 95
>CHL00095 clpC Clp protease ATP binding subunit
Probab=22.94 E-value=78 Score=29.57 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCceechhhhhhhhcCcHH
Q 032772 62 AEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 62 ~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E 94 (134)
.+++..|-..|...+...|+|+||-+++-.+++
T Consensus 10 ~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~ 42 (821)
T CHL00095 10 IKVIMLSQEEARRLGHNFVGTEQILLGLIGEGT 42 (821)
T ss_pred HHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCC
Confidence 467789999999999999999999999876654
No 96
>smart00350 MCM minichromosome maintenance proteins.
Probab=22.69 E-value=1.9e+02 Score=25.36 Aligned_cols=65 Identities=11% Similarity=0.174 Sum_probs=45.0
Q ss_pred ccchhhHHHHHhhCC--cccccCCchHHHHHHHHHHHH-------------------HHHHHHHHHHHHhCCCceechhh
Q 032772 26 QFPVGRIARFLKAGK--YAERVGAGAPVYLAAVLEYLA-------------------AEVLELAGNAARDNKKTRIVPRH 84 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~--~~~RVs~~A~vyLaAvLEyl~-------------------~eILelA~~~A~~~~~k~Itp~h 84 (134)
.++...+.+++.-.+ ...++++++..||......+= ..++.+|-..|+-.++..++++|
T Consensus 417 ~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~D 496 (509)
T smart00350 417 PISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEAD 496 (509)
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 567777777775532 235788888777765433322 35667777778888888899999
Q ss_pred hhhhhc
Q 032772 85 IQLAVR 90 (134)
Q Consensus 85 I~~AI~ 90 (134)
++.||.
T Consensus 497 v~~ai~ 502 (509)
T smart00350 497 VEEAIR 502 (509)
T ss_pred HHHHHH
Confidence 998874
No 97
>PF00979 Reovirus_cap: Reovirus outer capsid protein, Sigma 3; InterPro: IPR000153 Reoviruses are double-stranded RNA viruses that lack a membrane envelope. Their capsid is organised in two concentric icosahedral layers: an inner core and an outer capsid layer. The outer capsid is made up of the major proteins mu1 and sigma3, and the minor protein sigma1. The inner core structure is composed of the major core proteins lambda1 and sigma2, core spike protein lambda2, and minor core proteins lambda3 and mu2. The inner core encases the 10 segments of double-stranded RNA (dsRNA) which comprise the genome [].; GO: 0005198 structural molecule activity, 0019058 viral infectious cycle; PDB: 1FN9_A 1JMU_I.
Probab=22.48 E-value=80 Score=27.20 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceech-------hhhhhhhcCcHHHHh
Q 032772 52 YLAAVLEYLAAEVLELAGNAARDNKKTRIVP-------RHIQLAVRNDEELSK 97 (134)
Q Consensus 52 yLaAvLEyl~~eILelA~~~A~~~~~k~Itp-------~hI~~AI~nD~EL~~ 97 (134)
-.++.|..++..|.+.....+++.....+.+ +-+..-+.-|+|||.
T Consensus 102 ~yav~L~~~~d~v~~a~~~~~~~~~~~~v~~~~~~~~tEs~~~D~~idpdfWt 154 (367)
T PF00979_consen 102 QYAVWLHEIADHVDEADQREVDEPGGSRVAPNDIVVRTESIRSDVAIDPDFWT 154 (367)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHC-EEEEE--GGGSSTTSTTT-TT-----TT
T ss_pred HHHHHHHHHHhhcChhhcccccccccccccccceeeccccccccccccccccc
Confidence 4567788888889999999999988888888 555556666766653
No 98
>KOG3902 consensus Histone acetyltransferase PCAF/SAGA, subunit SUPT3H/SPT3 [Transcription]
Probab=21.90 E-value=2.8e+02 Score=23.58 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=43.4
Q ss_pred HHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcH
Q 032772 34 RFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE 93 (134)
Q Consensus 34 r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~ 93 (134)
.+|-......+=.-.+.+..-.++-==+.|+|-.+...|...|..-|||+|+-.-|..|.
T Consensus 32 qmmf~sGei~~P~pett~Lved~V~gqvie~l~qa~eia~lrgsr~Itpedliflir~Dr 91 (352)
T KOG3902|consen 32 QMMFQSGEIPDPLPETTNLVEDNVRGQVIESLVQANEIADLRGSRSITPEDLIFLIRHDR 91 (352)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCccccChHHHHHHhhccH
Confidence 344332345554445666555555555678888999999999999999999999999885
No 99
>PF09377 SBDS_C: SBDS protein C-terminal domain; InterPro: IPR018978 This entry represents the C-terminal domain of proteins that are highly conserved in species ranging from archaea to vertebrates and plants []. The family contains several Shwachman-Bodian-Diamond syndrome (SBDS, OMIM 260400) proteins from both mouse and humans. Shwachman-Diamond syndrome is an autosomal recessive disorder with clinical features that include pancreatic exocrine insufficiency, haematological dysfunction and skeletal abnormalities. It is characterised by bone marrow failure and leukemia predisposition. Members of this family play a role in RNA metabolism [, ]. In yeast Sdo1 is involved in the biogenesis of the 60S ribosomal subunit and translational activation of ribosomes. Together with the EF-2-like GTPase RIA1 (EfI1), it triggers the GTP-dependent release of TIF6 from 60S pre-ribosomes in the cytoplasm, thereby activating ribosomes for translation competence by allowing 80S ribosome assembly and facilitating TIF6 recycling to the nucleus, where it is required for 60S rRNA processing and nuclear export. This data links defective late 60S subunit maturation to an inherited bone marrow failure syndrome associated with leukemia predisposition []. A number of uncharacterised hydrophilic proteins of about 30 kDa share regions of similarity. These include, Mouse protein 22A3. Saccharomyces cerevisiae chromosome XII hypothetical protein YLR022c. Caenorhabditis elegans hypothetical protein W06E11.4. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0592. ; GO: 0042254 ribosome biogenesis; PDB: 2KDO_A 2L9N_A 2WBM_B 1P9Q_C 1T95_A.
Probab=21.71 E-value=2.1e+02 Score=20.42 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=20.2
Q ss_pred ccCcccchhhHHHHHhhCCcccccCCchH
Q 032772 22 KAGLQFPVGRIARFLKAGKYAERVGAGAP 50 (134)
Q Consensus 22 Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~ 50 (134)
+.+..+|+++|++.|++-.+.-....+|-
T Consensus 18 ~T~rP~p~~~IE~Am~e~~~~v~p~ksak 46 (125)
T PF09377_consen 18 RTNRPYPPTRIEKAMKEAHFSVDPNKSAK 46 (125)
T ss_dssp TTTBTT-HHHHHHHHHHTTS-SSTTS-HH
T ss_pred CCCCCCCHHHHHHHHHhCCcccCCCCCHH
Confidence 45778999999999988666656666655
No 100
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=21.39 E-value=1.6e+02 Score=23.69 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHHhh--CCcccccCCchHHHHHHHHHHHH----HHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 32 IARFLKA--GKYAERVGAGAPVYLAAVLEYLA----AEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 32 i~r~Lk~--~~~~~RVs~~A~vyLaAvLEyl~----~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
+.+|+++ ......|+.+|.-+|+..+..=+ .||=.++.- + ..+..+|++++|+..+...
T Consensus 135 l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly-~-~~~~~~It~~~V~~~v~~~ 199 (326)
T PRK07452 135 LKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALY-A-ENSTKPISAEEVKALVSNT 199 (326)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHh-c-cCCCCccCHHHHHHHhccC
Confidence 5566655 23456899999999888766533 344444321 1 0235679999999987654
No 101
>COG4430 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.06 E-value=1.2e+02 Score=24.06 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHH--HHHH-HhCCCceechhhhhhhhcCcHHHHhhhcCc
Q 032772 55 AVLEYLAAEVLELA--GNAA-RDNKKTRIVPRHIQLAVRNDEELSKLLGDV 102 (134)
Q Consensus 55 AvLEyl~~eILelA--~~~A-~~~~~k~Itp~hI~~AI~nD~EL~~L~~~~ 102 (134)
-++++.++|+.+.. |..+ -......+.|++|+.++..++.|..+|...
T Consensus 109 ~mi~ayL~e~~~a~~aG~~~~~~~~~e~~IPeeLq~alda~palk~~f~~L 159 (200)
T COG4430 109 RMIKAYLAEAIAAEKAGRWVALKKNEELIIPEELQDALDANPALKTAFEAL 159 (200)
T ss_pred HHHHHHHHHHHHHHhcCCccCCCcccccCCcHHHHHHHhcCHHHHHHHHhc
Confidence 34555555555432 3332 122334689999999999999999999643
No 102
>PF09077 Phage-MuB_C: Mu B transposition protein, C terminal ; InterPro: IPR009084 Bacteriophage Mu can integrate into the host bacterial genome and replicate via transposition. Mu requires the activity of four proteins for DNA transposition. Two of these proteins are the phage-encoded A and B transposition proteins, while the other two are host-specified accessory factors HU and IHF. These four proteins can form nucleoprotein complexes (transposomes), which enable strand transfer. The stable protein-DNA intermediate is subsequently disassembled prior to DNA replication by host proteins. The Mu B transposition protein is an ATP-dependent, DNA-binding protein required for target capture and immunity, as well as for activating transpososome function []. The C-terminal domain of the B transposition protein is believed to be involved in both DNA-binding and protein-protein contacts with the Mu A transposition protein. The structure of the C-terminal domain consists of four helices in an irregular array [].; GO: 0003677 DNA binding, 0006313 transposition, DNA-mediated; PDB: 1F6V_A.
Probab=20.63 E-value=33 Score=23.07 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
+...|.+|...|...+.. |+..||+.|-.
T Consensus 48 l~ktLrlA~m~A~g~g~~-i~~~~i~~A~~ 76 (78)
T PF09077_consen 48 LTKTLRLAAMFAKGEGEA-ITADHIRAAWK 76 (78)
T ss_dssp HHHHHGGGT-TT-TTS---SSHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 356678998989887775 99999998853
No 103
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=20.11 E-value=1e+02 Score=28.37 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E 94 (134)
+.++|+.|+..|...+...|.++||-+|+-.+.+
T Consensus 82 lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~ 115 (731)
T TIGR02639 82 VQRVLQRALLHVKSAGKKEIGIGDILVALFDEED 115 (731)
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcc
Confidence 4578899999999999999999999999876643
Done!