Query 032772
Match_columns 134
No_of_seqs 106 out of 599
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_A Histone H2A-IV; histone 100.0 2.3E-48 8E-53 283.8 9.4 124 1-125 1-124 (129)
2 2f8n_G Core histone macro-H2A. 100.0 4.4E-48 1.5E-52 279.3 9.2 119 1-123 1-119 (120)
3 2nqb_C Histone H2A; nucleosome 100.0 5.6E-48 1.9E-52 279.8 9.4 121 2-124 1-121 (123)
4 2f8n_K Histone H2A type 1; nuc 100.0 1.9E-47 6.4E-52 284.6 8.9 125 1-126 20-144 (149)
5 1id3_C Histone H2A.1; nucleoso 100.0 1.8E-46 6.1E-51 274.5 12.1 114 13-126 12-125 (131)
6 1f66_C Histone H2A.Z; nucleoso 100.0 3.6E-46 1.2E-50 272.0 8.6 123 1-124 1-125 (128)
7 2jss_A Chimera of histone H2B. 100.0 2.2E-36 7.4E-41 233.1 8.8 98 15-113 94-192 (192)
8 1jfi_A Transcription regulator 99.9 1.4E-24 4.7E-29 151.3 7.2 81 19-99 4-84 (98)
9 3ksy_A SOS-1, SON of sevenless 99.9 1E-24 3.6E-29 200.2 6.6 99 16-116 94-192 (1049)
10 1n1j_B NF-YC; histone-like PAI 99.8 1.6E-20 5.6E-25 130.3 8.1 80 20-99 13-92 (97)
11 4g92_C HAPE; transcription fac 99.8 7.9E-20 2.7E-24 131.2 8.0 76 24-99 39-114 (119)
12 2byk_A Chrac-16; nucleosome sl 99.8 1.2E-19 4E-24 133.8 5.5 85 15-99 8-93 (140)
13 1tzy_D Histone H4-VI; histone- 99.8 1.2E-18 4E-23 122.1 7.5 89 1-92 1-94 (103)
14 2yfw_B Histone H4, H4; cell cy 99.8 1.8E-18 6.3E-23 121.2 7.4 90 1-93 1-95 (103)
15 1f1e_A Histone fold protein; a 99.5 6.5E-14 2.2E-18 104.5 6.5 71 21-92 77-147 (154)
16 1id3_B Histone H4; nucleosome 99.3 3.9E-12 1.3E-16 88.9 7.7 88 2-92 1-93 (102)
17 1b67_A Protein (histone HMFA); 99.3 5.1E-12 1.8E-16 81.7 7.0 64 26-90 2-65 (68)
18 1ku5_A HPHA, archaeal histon; 99.3 7.8E-12 2.7E-16 81.4 6.8 65 26-91 6-70 (70)
19 1n1j_A NF-YB; histone-like PAI 99.1 1.1E-10 3.7E-15 79.8 6.6 68 23-90 5-73 (93)
20 2byk_B Chrac-14; nucleosome sl 99.0 4.3E-10 1.5E-14 81.3 5.0 75 24-98 7-82 (128)
21 2hue_C Histone H4; mini beta s 99.0 2.5E-09 8.7E-14 71.9 8.2 71 19-92 5-75 (84)
22 3b0c_W CENP-W, centromere prot 99.0 1.3E-09 4.3E-14 72.1 6.4 65 26-90 4-68 (76)
23 1f1e_A Histone fold protein; a 98.9 4.8E-09 1.7E-13 78.1 6.8 64 26-89 4-67 (154)
24 1taf_B TFIID TBP associated fa 98.9 7.1E-09 2.4E-13 67.9 6.8 66 24-90 4-69 (70)
25 3b0c_T CENP-T, centromere prot 98.6 2.9E-08 9.8E-13 70.1 4.2 71 24-95 5-75 (111)
26 1jfi_B DR1 protein, transcript 98.5 1.5E-07 5.2E-12 71.5 6.8 79 20-99 9-87 (179)
27 1taf_A TFIID TBP associated fa 98.5 2.3E-07 7.9E-12 60.3 6.7 61 30-91 5-65 (68)
28 3v9r_A MHF1, uncharacterized p 98.4 9.5E-07 3.2E-11 60.3 6.4 79 22-101 11-89 (90)
29 2hue_B Histone H3; mini beta s 98.3 1.9E-06 6.5E-11 57.3 6.3 66 25-90 2-71 (77)
30 4dra_A Centromere protein S; D 98.2 1.8E-06 6.1E-11 61.2 5.9 75 22-100 26-103 (113)
31 3nqj_A Histone H3-like centrom 98.2 3.2E-06 1.1E-10 56.7 5.8 66 25-90 2-73 (82)
32 3b0b_B CENP-S, centromere prot 98.2 2.3E-06 7.8E-11 60.1 5.0 78 22-100 18-95 (107)
33 3vh5_A CENP-S; histone fold, c 98.0 6E-06 2E-10 60.4 5.2 78 22-100 18-95 (140)
34 2yfv_A Histone H3-like centrom 98.0 9.7E-06 3.3E-10 56.2 5.8 68 23-90 24-98 (100)
35 3nqu_A Histone H3-like centrom 98.0 1E-05 3.5E-10 59.2 6.0 68 23-90 58-131 (140)
36 3r45_A Histone H3-like centrom 98.0 8.5E-06 2.9E-10 60.5 5.3 69 23-91 74-148 (156)
37 1tzy_C Histone H3; histone-fol 98.0 1.5E-05 5.1E-10 58.1 6.4 68 23-90 59-130 (136)
38 1tzy_B Histone H2B; histone-fo 97.9 2.1E-05 7.1E-10 56.6 6.2 67 23-90 34-100 (126)
39 2ly8_A Budding yeast chaperone 97.9 2.8E-05 9.5E-10 55.7 6.2 51 40-90 60-110 (121)
40 2l5a_A Histone H3-like centrom 97.8 1.8E-05 6.2E-10 62.2 4.2 59 32-91 167-225 (235)
41 2nqb_D Histone H2B; nucleosome 97.7 6.9E-05 2.4E-09 53.7 5.9 64 26-90 34-97 (123)
42 2jss_A Chimera of histone H2B. 97.1 0.00089 3E-08 50.9 5.9 61 30-90 7-67 (192)
43 1bh9_B TAFII28; histone fold, 97.0 0.0015 5E-08 44.2 5.8 64 26-90 16-80 (89)
44 3b0b_C CENP-X, centromere prot 96.9 0.0037 1.3E-07 41.6 6.9 65 24-88 6-72 (81)
45 4dra_E Centromere protein X; D 96.8 0.0048 1.6E-07 41.4 6.7 66 23-88 9-76 (84)
46 1h3o_B Transcription initiatio 95.2 0.051 1.8E-06 35.6 5.8 67 26-92 5-71 (76)
47 2l5a_A Histone H3-like centrom 94.1 0.093 3.2E-06 41.2 5.8 66 24-89 9-81 (235)
48 1wwi_A Hypothetical protein TT 90.9 0.77 2.6E-05 33.6 6.7 61 26-87 2-62 (148)
49 1k6k_A ATP-dependent CLP prote 86.6 0.74 2.5E-05 31.6 4.0 40 61-100 6-45 (143)
50 1r4v_A Hypothetical protein AQ 85.4 1 3.5E-05 33.6 4.3 61 26-87 26-86 (171)
51 1khy_A CLPB protein; alpha hel 81.5 1.2 4.1E-05 30.6 3.2 33 61-93 10-42 (148)
52 3fes_A ATP-dependent CLP endop 80.6 0.86 2.9E-05 31.8 2.2 39 61-99 12-52 (145)
53 2y1q_A CLPC N-domain, negative 79.2 1.3 4.5E-05 30.5 2.8 39 61-99 10-50 (150)
54 3v9r_B MHF2, uncharacterized p 78.0 8.6 0.00029 25.6 6.4 48 27-74 2-51 (88)
55 3fh2_A Probable ATP-dependent 77.5 1.1 3.8E-05 31.2 2.0 39 61-99 11-51 (146)
56 3zri_A CLPB protein, CLPV; cha 75.4 2.1 7.2E-05 31.2 3.1 39 61-99 29-69 (171)
57 3fes_A ATP-dependent CLP endop 74.4 1.9 6.6E-05 29.9 2.6 40 61-100 86-127 (145)
58 3fh2_A Probable ATP-dependent 73.3 2.7 9.2E-05 29.1 3.1 40 61-100 86-127 (146)
59 1k6k_A ATP-dependent CLP prote 71.7 3.4 0.00011 28.2 3.3 39 61-99 84-124 (143)
60 3zri_A CLPB protein, CLPV; cha 66.4 4.1 0.00014 29.6 2.9 32 62-93 104-136 (171)
61 1khy_A CLPB protein; alpha hel 66.1 6.9 0.00023 26.6 3.9 40 61-100 87-127 (148)
62 2y1q_A CLPC N-domain, negative 62.2 3.8 0.00013 28.1 2.0 33 61-93 84-116 (150)
63 1r6b_X CLPA protein; AAA+, N-t 56.4 11 0.00039 32.6 4.4 40 61-100 6-45 (758)
64 2v1u_A Cell division control p 52.8 41 0.0014 25.5 6.7 62 29-90 203-274 (387)
65 2vxz_A Pyrsv_GP04; viral prote 48.0 31 0.0011 25.3 4.9 42 60-101 75-116 (165)
66 3kw6_A 26S protease regulatory 42.8 27 0.00093 21.3 3.5 36 51-90 36-71 (78)
67 3uk6_A RUVB-like 2; hexameric 41.4 57 0.002 24.9 5.9 61 30-90 262-328 (368)
68 3pxg_A Negative regulator of g 40.7 13 0.00044 30.7 2.1 34 61-94 84-117 (468)
69 3pxg_A Negative regulator of g 39.9 15 0.0005 30.3 2.3 39 61-99 10-50 (468)
70 2qby_A CDC6 homolog 1, cell di 37.4 69 0.0023 24.2 5.7 62 30-91 200-271 (386)
71 1g8p_A Magnesium-chelatase 38 36.6 55 0.0019 24.7 5.1 47 44-90 267-320 (350)
72 2dzn_B 26S protease regulatory 35.4 43 0.0015 20.7 3.6 46 42-91 22-67 (82)
73 3pxi_A Negative regulator of g 34.7 19 0.00065 31.4 2.3 39 61-99 10-50 (758)
74 1qvr_A CLPB protein; coiled co 32.1 30 0.001 30.6 3.2 34 61-94 10-43 (854)
75 3pxi_A Negative regulator of g 31.3 22 0.00074 31.0 2.1 34 61-94 84-117 (758)
76 1r6b_X CLPA protein; AAA+, N-t 30.6 30 0.001 29.9 2.9 34 61-94 84-117 (758)
77 3k1j_A LON protease, ATP-depen 27.0 1.3E+02 0.0044 25.4 6.2 29 63-91 346-374 (604)
78 2c9o_A RUVB-like 1; hexameric 26.0 74 0.0025 25.8 4.4 62 29-90 368-435 (456)
79 4gqb_C Histone H4 peptide; TIM 24.0 29 0.00099 17.5 1.0 10 1-10 1-10 (26)
80 1lv7_A FTSH; alpha/beta domain 24.0 64 0.0022 23.5 3.3 27 64-90 224-250 (257)
81 2krk_A 26S protease regulatory 23.7 85 0.0029 19.7 3.5 43 44-90 37-79 (86)
82 3aji_B S6C, proteasome (prosom 23.4 54 0.0019 20.0 2.5 38 49-90 32-69 (83)
83 1iy2_A ATP-dependent metallopr 22.3 74 0.0025 23.6 3.4 26 64-89 252-277 (278)
84 1ixz_A ATP-dependent metallopr 22.2 76 0.0026 23.0 3.4 27 63-89 227-253 (254)
85 3vlf_B 26S protease regulatory 22.2 70 0.0024 20.1 2.8 37 50-90 33-69 (88)
86 3h4m_A Proteasome-activating n 21.4 76 0.0026 23.3 3.3 29 62-90 228-256 (285)
87 2qby_B CDC6 homolog 3, cell di 21.1 2.4E+02 0.0083 21.2 6.3 60 30-91 200-269 (384)
No 1
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=2.3e-48 Score=283.82 Aligned_cols=124 Identities=77% Similarity=1.162 Sum_probs=104.8
Q ss_pred CCCCCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 032772 1 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80 (134)
Q Consensus 1 m~~~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~I 80 (134)
|||+|++++ +.+++++|+|+|++|+|||+||+|||+++.++.||+++|+|||+||||||++||||+|+|.|.++++++|
T Consensus 1 m~~~~~~~~-~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krI 79 (129)
T 1tzy_A 1 MSGRGKQGG-KARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 79 (129)
T ss_dssp --------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCCCCCC-CCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeE
Confidence 999987443 2346789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCCC
Q 032772 81 VPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTS 125 (134)
Q Consensus 81 tp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~ 125 (134)
+|+||++||+||+|||+||+++||++|||+|+||++|++||..++
T Consensus 80 tp~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~~ 124 (129)
T 1tzy_A 80 IPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSH 124 (129)
T ss_dssp CHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred cHHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCcccccc
Confidence 999999999999999999999999999999999999999987654
No 2
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=4.4e-48 Score=279.33 Aligned_cols=119 Identities=65% Similarity=0.954 Sum_probs=106.0
Q ss_pred CCCCCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 032772 1 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80 (134)
Q Consensus 1 m~~~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~I 80 (134)
||||| +| .+++++|+|+|+||||||+||+|||+++.++.||+++|+|||+||||||++||+|+|+|.|+++++++|
T Consensus 1 m~~~~--~~--~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rI 76 (120)
T 2f8n_G 1 MSSRG--GK--KKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRV 76 (120)
T ss_dssp -------------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCC--CC--CCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceE
Confidence 89986 33 235689999999999999999999999989999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCC
Q 032772 81 VPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 123 (134)
Q Consensus 81 tp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~ 123 (134)
+|+||++||+||+|||+||+++||++|||+|+||++|++||.+
T Consensus 77 tp~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 77 TPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp CHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred cHHHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 9999999999999999999999999999999999999999753
No 3
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=5.6e-48 Score=279.82 Aligned_cols=121 Identities=76% Similarity=1.123 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceec
Q 032772 2 AGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIV 81 (134)
Q Consensus 2 ~~~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~It 81 (134)
||+|+++|++ ++++|+|+|++|+|||+||+|||+++.++.||+++|+|||+||||||++||||+|+|.|.++++++|+
T Consensus 1 ~~~~~~~~~~--~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt 78 (123)
T 2nqb_C 1 SGRGKGGKVK--GKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII 78 (123)
T ss_dssp --------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCCCCCCCC--CCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 5788866643 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCC
Q 032772 82 PRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGT 124 (134)
Q Consensus 82 p~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~ 124 (134)
|+||++||+||+|||+||+++||++|||+|+||++|++||.++
T Consensus 79 p~hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~ 121 (123)
T 2nqb_C 79 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 121 (123)
T ss_dssp HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC---
T ss_pred HHHHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCccccc
Confidence 9999999999999999999999999999999999999998653
No 4
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=1.9e-47 Score=284.61 Aligned_cols=125 Identities=74% Similarity=1.139 Sum_probs=104.1
Q ss_pred CCCCCCCCCCCCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Q 032772 1 MAGRGKTLGSGAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRI 80 (134)
Q Consensus 1 m~~~~~~~~~~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~I 80 (134)
|||+|++++ +.+++.+++|+|++|||||+||+|||+++.+++||+++|+|||+||||||++||||+|+|.|+++++++|
T Consensus 20 ~~~~~~~~~-~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrI 98 (149)
T 2f8n_K 20 MSGRGKQGG-KARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI 98 (149)
T ss_dssp ---------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred cccCCCCCC-CCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 899888643 2346789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCCCC
Q 032772 81 VPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSG 126 (134)
Q Consensus 81 tp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~~ 126 (134)
+|+||++||+||+|||+||+++||++|||+|+||++|++||..++.
T Consensus 99 tprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~~ 144 (149)
T 2f8n_K 99 IPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHH 144 (149)
T ss_dssp CHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC------
T ss_pred cHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCccccccc
Confidence 9999999999999999999999999999999999999999876543
No 5
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=1.8e-46 Score=274.51 Aligned_cols=114 Identities=73% Similarity=1.161 Sum_probs=106.9
Q ss_pred CCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 13 ~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
+++++|+|+|++|+|||+||+|||+++.++.||+++|+|||+||||||++||||+|+|.|.++++++|+|+||++||+||
T Consensus 12 ~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nD 91 (131)
T 1id3_C 12 AKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRND 91 (131)
T ss_dssp ----CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTC
T ss_pred CCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCceeeCCccCCCcccccCCCCCCCCC
Q 032772 93 EELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSG 126 (134)
Q Consensus 93 ~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~~~ 126 (134)
+|||+||+++||++|||+|+||++|++||..++.
T Consensus 92 eEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~~ 125 (131)
T 1id3_C 92 DELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKAT 125 (131)
T ss_dssp HHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSCC
T ss_pred HHHHHHhcCceecCCccCCCccHHHcCccccccc
Confidence 9999999999999999999999999999876543
No 6
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=3.6e-46 Score=271.97 Aligned_cols=123 Identities=61% Similarity=0.863 Sum_probs=99.2
Q ss_pred CCCCCCCCCCC-CCCCCCCcCcccCcccchhhHHHHHhhCCcc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 032772 1 MAGRGKTLGSG-AAKKATSRSSKAGLQFPVGRIARFLKAGKYA-ERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKT 78 (134)
Q Consensus 1 m~~~~~~~~~~-~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~-~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k 78 (134)
|||.+++.+.. .+++++|+|+|+||||||+||+|||+++.++ +||+++|+|||+||||||++||||+|+|.|++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k 80 (128)
T 1f66_C 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK 80 (128)
T ss_dssp ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88854443322 3457889999999999999999999998876 599999999999999999999999999999999999
Q ss_pred eechhhhhhhhcCcHHHHhhhcCceeeCCccCCCcccccCCCCCCC
Q 032772 79 RIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGT 124 (134)
Q Consensus 79 ~Itp~hI~~AI~nD~EL~~L~~~~~Ia~ggv~p~~~~~~~~~k~~~ 124 (134)
+|+|+||++||+||+|||+||+ +||++|||+|+||++|++||.++
T Consensus 81 rItprhi~lAI~nDeEL~~Ll~-~tia~ggv~P~i~~~l~~k~~~~ 125 (128)
T 1f66_C 81 RITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQ 125 (128)
T ss_dssp EECHHHHHHHHHHSHHHHHHCC-SEETTCCCCCCCCGGGC------
T ss_pred eEcHHHHHHHHhccHHHhhhhc-ceecCCccCCCCCHHhcCccccc
Confidence 9999999999999999999995 59999999999999999998653
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=2.2e-36 Score=233.05 Aligned_cols=98 Identities=63% Similarity=0.977 Sum_probs=94.1
Q ss_pred CCCCcCcccCcccchhhHHHHHhhCCcc-cccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcH
Q 032772 15 KATSRSSKAGLQFPVGRIARFLKAGKYA-ERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE 93 (134)
Q Consensus 15 ~~~s~s~Ra~L~fPvsri~r~Lk~~~~~-~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~ 93 (134)
+++++|+|+||+|||+||+|||+++.++ .||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 4679999999999999999999998786 699999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCceeeCCccCCCc
Q 032772 94 ELSKLLGDVTIANGGVMPNI 113 (134)
Q Consensus 94 EL~~L~~~~~Ia~ggv~p~~ 113 (134)
|||+||+ +||++|||+|+|
T Consensus 174 eL~~L~~-~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIR-ATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHC-SCCTTTCCSSCC
T ss_pred HHHHHHh-hhhcCCCcCCCC
Confidence 9999995 699999999986
No 8
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.91 E-value=1.4e-24 Score=151.30 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=62.4
Q ss_pred cCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhh
Q 032772 19 RSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKL 98 (134)
Q Consensus 19 ~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L 98 (134)
++.+++++||++||+|+||.+.+..|||.+|++|+++++|||+.||+++|++.|.++++++|+|+||..||++|++|++|
T Consensus 4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h
Q 032772 99 L 99 (134)
Q Consensus 99 ~ 99 (134)
+
T Consensus 84 ~ 84 (98)
T 1jfi_A 84 K 84 (98)
T ss_dssp -
T ss_pred H
Confidence 9
No 9
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.90 E-value=1e-24 Score=200.17 Aligned_cols=99 Identities=24% Similarity=0.430 Sum_probs=81.7
Q ss_pred CCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHH
Q 032772 16 ATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEEL 95 (134)
Q Consensus 16 ~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL 95 (134)
..++|+||||+|||+||||+| ++.|+.||+.+|||||+||||||++||||+|||+|++.++.+|+|+||++||+||+||
T Consensus 94 ~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL 172 (1049)
T 3ksy_A 94 IEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKVL 172 (1049)
T ss_dssp HTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSH
T ss_pred hhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHHH
Confidence 468999999999999999999 7799999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCceeeCCccCCCcccc
Q 032772 96 SKLLGDVTIANGGVMPNIHNL 116 (134)
Q Consensus 96 ~~L~~~~~Ia~ggv~p~~~~~ 116 (134)
+.||+.. ...+|++|+....
T Consensus 173 ~~l~~~d-ee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 173 MDMFHQD-VEDINILSLTDEE 192 (1049)
T ss_dssp HHHCC----------------
T ss_pred HHHHhhc-cccccCCCCcccc
Confidence 9999765 4566788865543
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.83 E-value=1.6e-20 Score=130.32 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=71.9
Q ss_pred CcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhh
Q 032772 20 SSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLL 99 (134)
Q Consensus 20 s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~ 99 (134)
..-.+++||++||+|+||.+.+..+|+.+|++|+++++|||+.+|++.|++.|.+.++++|+++||..||.+|++|+||.
T Consensus 13 ~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 13 KDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 44567899999999999999888999999999999999999999999999999999999999999999999999999998
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.80 E-value=7.9e-20 Score=131.21 Aligned_cols=76 Identities=25% Similarity=0.315 Sum_probs=73.7
Q ss_pred CcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhh
Q 032772 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLL 99 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~ 99 (134)
..+||++||+|+||.+.+..+|+.+|++|+++++|||+.+|++.|++.|...++++|+|+||..||.+|++|+||.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 4579999999999998999999999999999999999999999999999999999999999999999999999987
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.78 E-value=1.2e-19 Score=133.75 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=62.8
Q ss_pred CCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHH-HhCCCceechhhhhhhhcCcH
Q 032772 15 KATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAA-RDNKKTRIVPRHIQLAVRNDE 93 (134)
Q Consensus 15 ~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A-~~~~~k~Itp~hI~~AI~nD~ 93 (134)
+..+++.+..++||++||+|+||.+....+|+.+|+++++.++|||+.+|++.|++.| ...++++|++.||..||.+++
T Consensus 8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 4678899999999999999999999889999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhh
Q 032772 94 ELSKLL 99 (134)
Q Consensus 94 EL~~L~ 99 (134)
+|+||.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 999999
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.76 E-value=1.2e-18 Score=122.14 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=70.1
Q ss_pred CCCCCCCCCC-----CCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 032772 1 MAGRGKTLGS-----GAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75 (134)
Q Consensus 1 m~~~~~~~~~-----~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~ 75 (134)
|||+||++|. ++|++++++++.++ ||++.|+|+++.. ...||+.++..+|+.+|||++.+|++.|.+.|++.
T Consensus 1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 1tzy_D 1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHA 77 (103)
T ss_dssp --------------------CCCCCGGGG--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999887763 14567789999999 9999999999995 56899999999999999999999999999999999
Q ss_pred CCceechhhhhhhhcCc
Q 032772 76 KKTRIVPRHIQLAVRND 92 (134)
Q Consensus 76 ~~k~Itp~hI~~AI~nD 92 (134)
++++|+|+||.+|+++.
T Consensus 78 kRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 78 KRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp TCSEECHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHc
Confidence 99999999999999865
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.75 E-value=1.8e-18 Score=121.23 Aligned_cols=90 Identities=19% Similarity=0.240 Sum_probs=62.5
Q ss_pred CCCCCCCCCC-----CCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 032772 1 MAGRGKTLGS-----GAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75 (134)
Q Consensus 1 m~~~~~~~~~-----~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~ 75 (134)
|||+||++|. .+|++++++++.++ ||++.|+|+++.. ...||+.++.++|+.+|||++.+|++.|.+.|++.
T Consensus 1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha 77 (103)
T 2yfw_B 1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA 77 (103)
T ss_dssp -------------------------------CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8999887773 14567788999999 9999999999995 55899999999999999999999999999999999
Q ss_pred CCceechhhhhhhhcCcH
Q 032772 76 KKTRIVPRHIQLAVRNDE 93 (134)
Q Consensus 76 ~~k~Itp~hI~~AI~nD~ 93 (134)
++++|+|+||.+|+++..
T Consensus 78 kRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 78 KRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp TCSEECHHHHHHHHHHHC
T ss_pred CCCcCcHHHHHHHHHHcC
Confidence 999999999999998653
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.47 E-value=6.5e-14 Score=104.46 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=68.0
Q ss_pred cccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 21 SKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 21 ~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
.+.++.||++.|.|+|+++ ++.|||.+|.++|+.+||||+.+|+..|.+.|.+.+|++|+++||.+|++++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4789999999999999996 8999999999999999999999999999999999999999999999999765
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.33 E-value=3.9e-12 Score=88.92 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=65.1
Q ss_pred CCCCCCCCC-----CCCCCCCCcCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 032772 2 AGRGKTLGS-----GAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76 (134)
Q Consensus 2 ~~~~~~~~~-----~~~~~~~s~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~ 76 (134)
+|+||++|. ++|.+++.+.+..+ +|.+.|.|+++. ....|||.++...|..+|||++.+|+..|...|.+.+
T Consensus 1 ~~~~~~~~g~~~~g~kr~~k~~r~~i~~--ip~~~I~Rlar~-~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~Hak 77 (102)
T 1id3_B 1 SGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARR-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAK 77 (102)
T ss_dssp -----------------------CCGGG--SCHHHHHHHHHH-TTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCccchHHHHHHhccCC--CCHHHHHHHHHH-cCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 466665553 25566777777776 788899999999 4689999999999999999999999999999999999
Q ss_pred CceechhhhhhhhcCc
Q 032772 77 KTRIVPRHIQLAVRND 92 (134)
Q Consensus 77 ~k~Itp~hI~~AI~nD 92 (134)
|++|+++||.+|++..
T Consensus 78 RKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 78 RKTVTSLDVVYALKRQ 93 (102)
T ss_dssp CSEECHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHc
Confidence 9999999999999744
No 17
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.31 E-value=5.1e-12 Score=81.66 Aligned_cols=64 Identities=33% Similarity=0.445 Sum_probs=61.4
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.||.++|.|+|++. ...||+.+|...|..++|+|+.+|.+.|...|.+.+|++|+|+||.+|++
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 48999999999997 78999999999999999999999999999999999999999999999985
No 18
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.28 E-value=7.8e-12 Score=81.44 Aligned_cols=65 Identities=29% Similarity=0.413 Sum_probs=62.1
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
.||++.|.|++++. +..|++.++...|..++|+++.+|++.|...|.+.||++|+++||.+|+++
T Consensus 6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 68999999999994 789999999999999999999999999999999999999999999999864
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.13 E-value=1.1e-10 Score=79.84 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=62.9
Q ss_pred cCcccchhhHHHHHhhC-CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAG-KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~-~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
..+.||.++|.|+|+++ ....||+.+|...|..++|.|+.+|...|...|.+.+|++|+++||..|+.
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 46789999999999996 446899999999999999999999999999999999999999999999996
No 20
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.98 E-value=4.3e-10 Score=81.34 Aligned_cols=75 Identities=19% Similarity=0.151 Sum_probs=64.5
Q ss_pred CcccchhhHHHHHhh-CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhh
Q 032772 24 GLQFPVGRIARFLKA-GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKL 98 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~-~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L 98 (134)
.+.||+++|.|+|++ .-...+|+.+|...|+.++|.|+.+|...|...|.+.+|++|+++||..|+....-++++
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl 82 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFV 82 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHH
Confidence 578999999999996 445789999999999999999999999999999999999999999999999876544444
No 21
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.97 E-value=2.5e-09 Score=71.95 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=64.4
Q ss_pred cCcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 19 RSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 19 ~s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
+.+..+ +|.+.|.|+++.. +..|||.++...|..+|||++.+|+..|...+.+.+|++|+++||..|++..
T Consensus 5 r~~~~~--ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 5 RDNIQG--ITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGGCCS--SCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred cccCCC--CCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 344444 7888999999994 7899999999999999999999999999999999999999999999999864
No 22
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.97 E-value=1.3e-09 Score=72.07 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=60.7
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.||.+.|.|+|++.....+||.+|...|..++|.|+.+|...|...|.+.++++|+++||..|++
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 68999999999974346799999999999999999999999999999999999999999999984
No 23
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.86 E-value=4.8e-09 Score=78.07 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=61.3
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhh
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
.||.+.|.|+|++.-...|||.+|...|+.++|.|+.+|...|.+.|.+.+|++|+++||..|+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 4899999999999646799999999999999999999999999999999999999999999998
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.86 E-value=7.1e-09 Score=67.90 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=62.3
Q ss_pred CcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.-.||+..|.++.+. .+..+|++++...|+.-+||-+.||++.|.+.+++.+|++++.+||+.|++
T Consensus 4 ~s~lp~~~v~~iaes-~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAES-IGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHH-TTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 347999999999999 678999999999999999999999999999999999999999999999874
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.61 E-value=2.9e-08 Score=70.13 Aligned_cols=71 Identities=8% Similarity=0.029 Sum_probs=61.8
Q ss_pred CcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHH
Q 032772 24 GLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEEL 95 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL 95 (134)
.+.+|.+-|.|+++.. ...|||.++...|..+++.++.+|...|...|.+.+|++|+++||.+|++....+
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 4578999999999995 7889999999999999999999999999999999999999999999999865443
No 26
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.54 E-value=1.5e-07 Score=71.48 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=67.1
Q ss_pred CcccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhh
Q 032772 20 SSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLL 99 (134)
Q Consensus 20 s~Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~ 99 (134)
..-..+.||++.|.|+|++.--..+|+.+|...|..+++.|+..|...|...|.+.+|++|+++||..|+. +-+|...+
T Consensus 9 ~~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 9 GNDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp ---CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred CchhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 44566789999999999994225899999999999999999999999999999999999999999999996 44444433
No 27
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.54 E-value=2.3e-07 Score=60.32 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=57.3
Q ss_pred hhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 30 GRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 30 sri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
-.|+++|++ .++.+++..++..|.-.++-++.+|++.|...|.+.|+++|+.+||++||..
T Consensus 5 ~~i~~iLk~-~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKE-LNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHH-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 358999999 6789999999999999999999999999999999999999999999999963
No 28
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=9.5e-07 Score=60.30 Aligned_cols=79 Identities=14% Similarity=0.027 Sum_probs=65.8
Q ss_pred ccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhcC
Q 032772 22 KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGD 101 (134)
Q Consensus 22 Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~~ 101 (134)
++.|.+-|++|-.-.-+ .....|+..+...|+.+++..+.+|.+-+...|++.||++|+++||.++++.++.|..++.+
T Consensus 11 Kaal~~~V~ki~~e~~~-~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~~ 89 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLS-SEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVTQ 89 (90)
T ss_dssp HHHHHHHHHHHHHHHSC-SSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHH-hcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhhc
Confidence 34566777776544422 22357999999999999999999999999999999999999999999999999999988754
No 29
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.28 E-value=1.9e-06 Score=57.25 Aligned_cols=66 Identities=24% Similarity=0.220 Sum_probs=59.5
Q ss_pred cccchhhHHHHHhhC----CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 25 LQFPVGRIARFLKAG----KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 25 L~fPvsri~r~Lk~~----~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
|-+|...|.|+.++- ....|++++|...|.-+.|.+.-+++|-+...|.+.++.+|+|.||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 567888899988872 246899999999999999999999999999999999999999999999964
No 30
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.25 E-value=1.8e-06 Score=61.19 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=63.7
Q ss_pred ccCcccchhhHHHHHhhCCcccc---cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhh
Q 032772 22 KAGLQFPVGRIARFLKAGKYAER---VGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKL 98 (134)
Q Consensus 22 Ra~L~fPvsri~r~Lk~~~~~~R---Vs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L 98 (134)
++.|.+.|+||- ++ ....| |+..+...|+.+++.++.+|..-+...|++.||++|+++||.++++.++.|..+
T Consensus 26 Kaal~y~V~rIv---ke-~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~ 101 (113)
T 4dra_A 26 KAAVHYTVGCLC---EE-VALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKY 101 (113)
T ss_dssp HHHHHHHHHHHH---HH-HHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHH---HH-HHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHH
Confidence 355667766655 33 23334 999999999999999999999999999999999999999999999999999887
Q ss_pred hc
Q 032772 99 LG 100 (134)
Q Consensus 99 ~~ 100 (134)
+.
T Consensus 102 l~ 103 (113)
T 4dra_A 102 IT 103 (113)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 31
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.18 E-value=3.2e-06 Score=56.75 Aligned_cols=66 Identities=20% Similarity=0.115 Sum_probs=59.1
Q ss_pred cccchhhHHHHHhhCC------cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 25 LQFPVGRIARFLKAGK------YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 25 L~fPvsri~r~Lk~~~------~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
|-+|...|.|+.++-. ...|++++|...|.-+.|.+.-+++|-+...|.+.+|.+|+|.||++|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 4578888889888732 36799999999999999999999999999999999999999999999864
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.16 E-value=2.3e-06 Score=60.10 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=63.7
Q ss_pred ccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhc
Q 032772 22 KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG 100 (134)
Q Consensus 22 Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~ 100 (134)
++.|+|-|++|-+---. ....+++..++..|+.+++.++.+|..-+...|++.||++|+++||.++++.++.|...+.
T Consensus 18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 34456666655533322 1236999999999999999999999999999999999999999999999999999877663
No 33
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.03 E-value=6e-06 Score=60.43 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=66.1
Q ss_pred ccCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhc
Q 032772 22 KAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG 100 (134)
Q Consensus 22 Ra~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~ 100 (134)
++.|+|-|++|-.-.-. .....|+..+...|+.+++.++.+|..-+...|++.||++|+++||.++++.++.|..++.
T Consensus 18 KaAl~y~VgkIvee~~~-~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~ 95 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAE-DKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (140)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 45567777776654322 1235799999999999999999999999999999999999999999999999999988885
No 34
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.02 E-value=9.7e-06 Score=56.24 Aligned_cols=68 Identities=25% Similarity=0.177 Sum_probs=57.8
Q ss_pred cCcccchhhHHHHHhhCC-------cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAGK-------YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~~-------~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+|.+|...|.|+.++-. ...|++.+|...|.-+.|.++-+++|-+...|.+.++.+|+|.||++|.+
T Consensus 24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 577899999999998821 15799999999999999999999999999999999999999999999864
No 35
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.00 E-value=1e-05 Score=59.20 Aligned_cols=68 Identities=19% Similarity=0.108 Sum_probs=61.2
Q ss_pred cCcccchhhHHHHHhhCC------cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAGK------YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~~------~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+|.+|...|.|+.++-. ...|++.+|...|.-+.|.++-+++|-+...|.+.++.+|+|.||++|.+
T Consensus 58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 567899999999998732 35799999999999999999999999999999999999999999999874
No 36
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.98 E-value=8.5e-06 Score=60.54 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=61.7
Q ss_pred cCcccchhhHHHHHhhCC------cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 23 AGLQFPVGRIARFLKAGK------YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~~------~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
.+|.+|...|.|++++-. ...|++.+|...|.-+.|.++-+++|-+...|.+.++.+|+|.||++|.+-
T Consensus 74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 567899999999998822 357999999999999999999999999999999999999999999999753
No 37
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.98 E-value=1.5e-05 Score=58.12 Aligned_cols=68 Identities=25% Similarity=0.234 Sum_probs=61.2
Q ss_pred cCcccchhhHHHHHhhC----CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAG----KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~----~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+|.+|...|.|+.++- ....|++.+|...|.-+.|.++-+++|.+...|.+.++.+|.|.||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 45679999999999873 145799999999999999999999999999999999999999999999964
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.92 E-value=2.1e-05 Score=56.61 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=58.9
Q ss_pred cCcccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 23 AGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
..-.|.+ .|+++|++-.-...||..|...|...++.++..|...|...+..+++++|++++|+.|++
T Consensus 34 ~~esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 34 RKESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3345666 799999984334589999999999999999999999999999999999999999999985
No 39
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=2.8e-05 Score=55.65 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=49.0
Q ss_pred CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 40 KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 40 ~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.++.|||.++-..+..+||.+..+|+..|..++.+.+||+||.+||..|++
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 567999999999999999999999999999999999999999999999986
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=1.8e-05 Score=62.25 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=54.5
Q ss_pred HHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 32 IARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 32 i~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
+.|+.+. .++.|||.++...+..+||.+..+|+..|..+|.+.++++|+++||.+|++.
T Consensus 167 ~~RlaRr-gGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr 225 (235)
T 2l5a_A 167 DEEDGDK-GGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR 225 (235)
T ss_dssp CCTTSCC-TTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred HHHHhhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence 4477777 5789999999999999999999999999999999999999999999999864
No 41
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.70 E-value=6.9e-05 Score=53.69 Aligned_cols=64 Identities=23% Similarity=0.235 Sum_probs=57.0
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.|. ..|+++|++-.-...||..|...|...++.++..|...|...+..+++++|++++|+.|++
T Consensus 34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 454 5789999984334589999999999999999999999999999999999999999999985
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.09 E-value=0.00089 Score=50.91 Aligned_cols=61 Identities=26% Similarity=0.255 Sum_probs=55.2
Q ss_pred hhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 30 GRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 30 sri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
..|+|.|++-.-...|+..|..+|...+..++..|...|...+..+++++||+++|+.|++
T Consensus 7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 3689999984444689999999999999999999999999999999999999999999996
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.01 E-value=0.0015 Score=44.23 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=55.0
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cceechhhhhhhhc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK-KTRIVPRHIQLAVR 90 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~-~k~Itp~hI~~AI~ 90 (134)
.||-..|+|+++. .....|+.+..+.|+++--.|+.||.|.|.......+ ...|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~-~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQS-ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 4677779999987 4567899999999999999999999999999887654 45799999999874
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.89 E-value=0.0037 Score=41.57 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=57.6
Q ss_pred CcccchhhHHHHHhh--CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhh
Q 032772 24 GLQFPVGRIARFLKA--GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLA 88 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~--~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~A 88 (134)
+-.||..-|.|+|+. ....-||+.+|...++..|+-|+.|-+.+|...|...+...|..+||+..
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 457999999999997 33456999999999999999999999999999998888889999999874
No 45
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.77 E-value=0.0048 Score=41.36 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=57.1
Q ss_pred cCcccchhhHHHHHhhC--CcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhh
Q 032772 23 AGLQFPVGRIARFLKAG--KYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLA 88 (134)
Q Consensus 23 a~L~fPvsri~r~Lk~~--~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~A 88 (134)
++..||..-|.|+|+.. ...-||+.+|...++..|+-|+.|-+-+|...|...+...|..+||+..
T Consensus 9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 46689999999999962 2456999999999999999999999999999998878888999999874
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.20 E-value=0.051 Score=35.60 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=59.2
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcCc
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRND 92 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD 92 (134)
.|+-.++..++++-.....+..++-..|..+.+-|+..+++.|+..|++.+..++.+.|+++....+
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 4667788899988555679999999999999999999999999999999999999999999877543
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=94.12 E-value=0.093 Score=41.15 Aligned_cols=66 Identities=24% Similarity=0.163 Sum_probs=54.9
Q ss_pred CcccchhhHHHHHhh---C-C---cccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhh
Q 032772 24 GLQFPVGRIARFLKA---G-K---YAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 24 ~L~fPvsri~r~Lk~---~-~---~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
.|.+|-.+|.|+.++ + . ...|+..+|...|--+-|.++-.++|-+.-.|.+.++-+|.|.|+++|-
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 467777778887766 1 1 1369999999999999999999999999999999999999999999984
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=90.91 E-value=0.77 Score=33.56 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=52.6
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhh
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQL 87 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~ 87 (134)
.+++.+++++++.. -.--|..+-.--+..+++--+.+++..|-.-|+.+||..|.|.||-+
T Consensus 2 vm~~~~~e~lFR~a-a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPI 62 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPI 62 (148)
T ss_dssp CSCHHHHHHHHHHH-HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCC
T ss_pred cCCHHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 47889999999993 34466677778888999999999999999999999999999999854
No 49
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=86.59 E-value=0.74 Score=31.64 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhc
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG 100 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~ 100 (134)
+.++|+.|-+.|...+...|+|+||-+++-.+++...++.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4678999999999999999999999999988877666653
No 50
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=85.43 E-value=1 Score=33.62 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=53.4
Q ss_pred ccchhhHHHHHhhCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhh
Q 032772 26 QFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQL 87 (134)
Q Consensus 26 ~fPvsri~r~Lk~~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~ 87 (134)
.+++.+++++++.. -.--|..+-.--+..+++--+.++|..|-.-|+.+||..|.|.||-+
T Consensus 26 vmg~~kferlFR~a-agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPI 86 (171)
T 1r4v_A 26 PKGFDKLDHYFRTE-LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNI 86 (171)
T ss_dssp CTTHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCC
T ss_pred cCChHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 88999999999993 34466677778888999999999999999999999999999999864
No 51
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=81.54 E-value=1.2 Score=30.64 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcH
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE 93 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~ 93 (134)
+.++|+.|-..|...+...|+|+||-+++-.++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 367899999999999999999999999997765
No 52
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=80.65 E-value=0.86 Score=31.80 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcH--HHHhhh
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE--ELSKLL 99 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~--EL~~L~ 99 (134)
+.++|+.|.+.|...+...|+|+||-+|+-.++ ....++
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL 52 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVL 52 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHH
Confidence 468899999999999999999999999998654 344444
No 53
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=79.21 E-value=1.3 Score=30.55 Aligned_cols=39 Identities=33% Similarity=0.342 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH--HHhhh
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE--LSKLL 99 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E--L~~L~ 99 (134)
+.++|+.|-+.|...+...|+|+||-+++-.+++ ...++
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHH
Confidence 3678899999999999999999999999976553 44444
No 54
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=78.02 E-value=8.6 Score=25.62 Aligned_cols=48 Identities=10% Similarity=0.181 Sum_probs=39.8
Q ss_pred cchhhHHHHHhh--CCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032772 27 FPVGRIARFLKA--GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARD 74 (134)
Q Consensus 27 fPvsri~r~Lk~--~~~~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~ 74 (134)
+|..-+.|+|+. ....-||+.+|...++..++-|+.|-+-+|......
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577788999986 234469999999999999999999999999765544
No 55
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=77.53 E-value=1.1 Score=31.20 Aligned_cols=39 Identities=31% Similarity=0.297 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCc--HHHHhhh
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRND--EELSKLL 99 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD--~EL~~L~ 99 (134)
+.++|+.|.+.|...+...|+|+||-+|+-.+ .....++
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL 51 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKAL 51 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHH
Confidence 46789999999999999999999999999765 3445555
No 56
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=75.37 E-value=2.1 Score=31.21 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcH--HHHhhh
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE--ELSKLL 99 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~--EL~~L~ 99 (134)
+.++|+.|.+.|...+...|.|+||-+|+-.++ ....++
T Consensus 29 a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL 69 (171)
T 3zri_A 29 SKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVL 69 (171)
T ss_dssp HHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHH
Confidence 358899999999999999999999999998764 344444
No 57
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=74.43 E-value=1.9 Score=29.92 Aligned_cols=40 Identities=35% Similarity=0.463 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH--HHhhhc
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE--LSKLLG 100 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E--L~~L~~ 100 (134)
+..+|+.|...|...+...|+++||-+|+-.|++ ...++.
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 4678899999999999999999999999976543 445553
No 58
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=73.34 E-value=2.7 Score=29.15 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcH--HHHhhhc
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE--ELSKLLG 100 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~--EL~~L~~ 100 (134)
+..+|+.|...|...+...|+++||-+|+-.|+ ....++.
T Consensus 86 ~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 357889999999999999999999999997554 4555553
No 59
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=71.73 E-value=3.4 Score=28.18 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH--HHhhh
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE--LSKLL 99 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E--L~~L~ 99 (134)
+..+|+.|...|...+...|.++||-+|+-.+++ ...++
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL 124 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLL 124 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHH
Confidence 4578999999999999999999999999987653 34444
No 60
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=66.44 E-value=4.1 Score=29.63 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHH-hCCCceechhhhhhhhcCcH
Q 032772 62 AEVLELAGNAAR-DNKKTRIVPRHIQLAVRNDE 93 (134)
Q Consensus 62 ~eILelA~~~A~-~~~~k~Itp~hI~~AI~nD~ 93 (134)
.++|+.|...|. ..+...|.++||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 578999999999 99999999999999998777
No 61
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=66.08 E-value=6.9 Score=26.65 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcC-cHHHHhhhc
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRN-DEELSKLLG 100 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~n-D~EL~~L~~ 100 (134)
+..+|+.|...|...+...|+++||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 5678899999999989999999999999984 334445553
No 62
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=62.24 E-value=3.8 Score=28.11 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcH
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDE 93 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~ 93 (134)
+..+|+.|...|...+...|.++||-+|+-.+.
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 467889999999999999999999999997554
No 63
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=56.39 E-value=11 Score=32.62 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhc
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG 100 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~ 100 (134)
+.++|+.|-+.|...+...|+|+||-+++-.|++...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4678999999999999999999999999998887766663
No 64
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=52.79 E-value=41 Score=25.54 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=45.2
Q ss_pred hhhHHHHHhhC----CcccccCCchHHHHHHHHH------HHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 29 VGRIARFLKAG----KYAERVGAGAPVYLAAVLE------YLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 29 vsri~r~Lk~~----~~~~RVs~~A~vyLaAvLE------yl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
...+..+++.- .....++.++.-+++.... ..+..+++.++..|...+...|+.+|++.++.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 35556666541 1234678888888887776 45668888888888877888999999998875
No 65
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=48.02 E-value=31 Score=25.33 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhCCCceechhhhhhhhcCcHHHHhhhcC
Q 032772 60 LAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGD 101 (134)
Q Consensus 60 l~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~EL~~L~~~ 101 (134)
.+.++++.-+..-...|.+-|+|.++..-|..|.|-..+|..
T Consensus 75 kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 75 LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 677788887787888999999999999999999999999964
No 66
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=42.76 E-value=27 Score=21.28 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 51 VYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 51 vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
-|-.|=|+.++.+-. ..|...+...|+.+|+..|+.
T Consensus 36 G~SGADi~~l~~eA~----~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 36 GASGAEVKGVCTEAG----MYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp TCCHHHHHHHHHHHH----HHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----HHHHHhCCCCCCHHHHHHHHH
Confidence 344444555444443 334445677899999999985
No 67
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=41.40 E-value=57 Score=24.92 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=40.9
Q ss_pred hhHHHHHhhC--CcccccCCchHHHHHHHHH-H---HHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 30 GRIARFLKAG--KYAERVGAGAPVYLAAVLE-Y---LAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 30 sri~r~Lk~~--~~~~RVs~~A~vyLaAvLE-y---l~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
..+..+|+.- .....++.++..+|+...+ . .+..+++.|...|...+...|+.+|++.++.
T Consensus 262 ~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 262 KDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 4455555531 1223577777777776665 1 2345777777777777888999999999875
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=40.66 E-value=13 Score=30.68 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E 94 (134)
+..+|+.|...|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 3578899999999999999999999999986653
No 69
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=39.85 E-value=15 Score=30.34 Aligned_cols=39 Identities=31% Similarity=0.289 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCc--HHHHhhh
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRND--EELSKLL 99 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD--~EL~~L~ 99 (134)
+.++|+.|-..|...+...|+|+||-+++-.+ .....++
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 46788999999999999999999999999754 3444444
No 70
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=37.41 E-value=69 Score=24.17 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=41.0
Q ss_pred hhHHHHHhh----CCcccccCCchHHHHHHHHH------HHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 30 GRIARFLKA----GKYAERVGAGAPVYLAAVLE------YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 30 sri~r~Lk~----~~~~~RVs~~A~vyLaAvLE------yl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
..+..+++. ......++.++.-+++.... ..+.+++..++..|...+...|+.+|++.++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 445556654 11123566677777776665 234467888888887778889999999987753
No 71
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=36.62 E-value=55 Score=24.71 Aligned_cols=47 Identities=17% Similarity=-0.022 Sum_probs=33.7
Q ss_pred ccCCchHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 44 RVGAGAPVYLAAVLEY-------LAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 44 RVs~~A~vyLaAvLEy-------l~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.++.++.-||.....- -+..+++.|...|...++..|+++|+..++.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 5677776666655443 1346777778888778888899999988773
No 72
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=35.45 E-value=43 Score=20.66 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=31.8
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 42 AERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 42 ~~RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
...+...+.-|-.|=|+.++.|-...|. ..++..|+.+|+..|+..
T Consensus 22 l~~lA~~t~G~SGADi~~l~~eAa~~ai----~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 22 LDSLIIRNDSLSGAVIAAIMQEAGLRAV----RKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp STTTTTSSCCCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHH----HhccCCcCHHHHHHHHHH
Confidence 4455666666777778877776555443 346678999999988854
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.74 E-value=19 Score=31.36 Aligned_cols=39 Identities=31% Similarity=0.289 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCc--HHHHhhh
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRND--EELSKLL 99 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD--~EL~~L~ 99 (134)
+.++|+.|-+.|...+...|+|+||-+++-.+ .....++
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 35788999999999999999999999999754 3344444
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=32.06 E-value=30 Score=30.64 Aligned_cols=34 Identities=29% Similarity=0.222 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E 94 (134)
+.++|+.|-..|...+...|+|+||-+++-.+++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~ 43 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDER 43 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 4678899999999999999999999999976643
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.33 E-value=22 Score=31.00 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E 94 (134)
+.++|+.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 4678899999999999999999999999976653
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=30.58 E-value=30 Score=29.93 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCceechhhhhhhhcCcHH
Q 032772 61 AAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEE 94 (134)
Q Consensus 61 ~~eILelA~~~A~~~~~k~Itp~hI~~AI~nD~E 94 (134)
+..+|+.|...|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4678899999999889999999999999987653
No 77
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=26.97 E-value=1.3e+02 Score=25.43 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 63 EVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 63 eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
.+++.|...|...++..|+++|++.|+..
T Consensus 346 ~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 346 GIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 57888888888888899999999999854
No 78
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=26.04 E-value=74 Score=25.79 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=41.6
Q ss_pred hhhHHHHHhhC--CcccccCCchHHHHHHHH-HH---HHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 29 VGRIARFLKAG--KYAERVGAGAPVYLAAVL-EY---LAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 29 vsri~r~Lk~~--~~~~RVs~~A~vyLaAvL-Ey---l~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
...+..+|+.. .....++.++.-+++..- +- ....+++.|...|...++..|+++|++.++.
T Consensus 368 ~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~ 435 (456)
T 2c9o_A 368 PQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISE 435 (456)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHH
Confidence 35666777541 112246666666666644 21 3456778888888888889999999999874
No 79
>4gqb_C Histone H4 peptide; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=24.04 E-value=29 Score=17.53 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=7.9
Q ss_pred CCCCCCCCCC
Q 032772 1 MAGRGKTLGS 10 (134)
Q Consensus 1 m~~~~~~~~~ 10 (134)
.||||+++|.
T Consensus 1 ~sgrgkggkg 10 (26)
T 4gqb_C 1 XSGRGKGGKG 10 (26)
T ss_pred CCCCCcCCcc
Confidence 4789998875
No 80
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.95 E-value=64 Score=23.46 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 64 VLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 64 ILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
++..|...|...++..|+.+|++.|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 444555556666778899999998874
No 81
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=23.74 E-value=85 Score=19.72 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=27.1
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 44 RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 44 RVs~~A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.+...+.-|-.|=|+.|+.|-...|. ......|+.+|+..|+.
T Consensus 37 ~LA~~T~G~SGADL~~l~~eAa~~al----r~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 37 KIAELMPGASGAEVKGVCTEAGMYAL----RERRVHVTQEDFEMAVA 79 (86)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHH----HTTCSEECHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHH----HHcCCCCCHHHHHHHHH
Confidence 33344445556666666665554443 34467899999998875
No 82
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=23.45 E-value=54 Score=20.05 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 49 APVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 49 A~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
+.-|-.|=|+.++.+- ...|...+...|+.+|+..|+.
T Consensus 32 t~G~SGADi~~l~~eA----~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 32 PDKISGADINSICQES----GMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp SCCCCHHHHHHHHHHH----HHGGGTSCCSSBCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----HHHHHHhccCCcCHHHHHHHHH
Confidence 3334455555555443 3334445567799999998874
No 83
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=22.25 E-value=74 Score=23.57 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCceechhhhhhhh
Q 032772 64 VLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 64 ILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
+++.|...|...++..|+.+|++.|+
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 44455555555666789999999876
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.18 E-value=76 Score=22.99 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCceechhhhhhhh
Q 032772 63 EVLELAGNAARDNKKTRIVPRHIQLAV 89 (134)
Q Consensus 63 eILelA~~~A~~~~~k~Itp~hI~~AI 89 (134)
.++..|...|...++..|+.+|++.|+
T Consensus 227 ~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 227 NLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 344445555555666789999998876
No 85
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=22.17 E-value=70 Score=20.06 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 50 PVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 50 ~vyLaAvLEyl~~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
.-|-.|=|+.|+.|-...|. ..+...|+.+|+..|+.
T Consensus 33 ~G~SGADl~~l~~eAa~~a~----r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 33 PNSTGAELRSVCTEAGMFAI----RARRKVATEKDFLKAVD 69 (88)
T ss_dssp SSCCHHHHHHHHHHHHHHHH----HHSCSSBCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH----HhccccCCHHHHHHHHH
Confidence 33444555656555444433 33556799999999884
No 86
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=21.36 E-value=76 Score=23.25 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCceechhhhhhhhc
Q 032772 62 AEVLELAGNAARDNKKTRIVPRHIQLAVR 90 (134)
Q Consensus 62 ~eILelA~~~A~~~~~k~Itp~hI~~AI~ 90 (134)
..++..|...|...++..|+++|++.|+.
T Consensus 228 ~~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 228 KAICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 34556666666667788899999999984
No 87
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=21.11 E-value=2.4e+02 Score=21.25 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=37.7
Q ss_pred hhHHHHHhh----CCcccccCCchHHHHHHHHH------HHHHHHHHHHHHHHHhCCCceechhhhhhhhcC
Q 032772 30 GRIARFLKA----GKYAERVGAGAPVYLAAVLE------YLAAEVLELAGNAARDNKKTRIVPRHIQLAVRN 91 (134)
Q Consensus 30 sri~r~Lk~----~~~~~RVs~~A~vyLaAvLE------yl~~eILelA~~~A~~~~~k~Itp~hI~~AI~n 91 (134)
..+..+++. .-....++.++.-+++.... ..+.++++.++..|. +...|+.+|+..++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Confidence 455566654 11123567766666666554 123467777777775 5568999999988743
Done!