Query 032773
Match_columns 134
No_of_seqs 134 out of 507
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:00:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 99.9 1.5E-26 5.2E-31 181.3 6.6 82 1-83 18-106 (179)
2 2byk_B Chrac-14; nucleosome sl 99.9 6.1E-26 2.1E-30 169.0 9.0 89 1-89 12-107 (128)
3 1n1j_A NF-YB; histone-like PAI 99.9 1.3E-23 4.4E-28 147.5 7.3 76 1-76 11-93 (93)
4 3b0c_W CENP-W, centromere prot 99.7 1.4E-17 4.7E-22 113.3 5.7 57 1-58 7-70 (76)
5 1f1e_A Histone fold protein; a 99.7 4.2E-17 1.4E-21 125.0 5.6 63 2-65 8-77 (154)
6 3b0c_T CENP-T, centromere prot 99.5 9.4E-14 3.2E-18 100.9 6.5 86 2-88 11-104 (111)
7 2byk_A Chrac-16; nucleosome sl 99.4 1.5E-14 5E-19 109.2 1.4 84 1-84 22-115 (140)
8 1b67_A Protein (histone HMFA); 99.4 1.4E-13 4.7E-18 91.0 5.5 56 2-58 6-67 (68)
9 4g92_C HAPE; transcription fac 99.3 2.2E-12 7.6E-17 94.4 4.4 59 1-59 44-108 (119)
10 1f1e_A Histone fold protein; a 99.2 2.5E-11 8.7E-16 92.9 5.0 57 1-58 85-147 (154)
11 1n1j_B NF-YC; histone-like PAI 99.1 3.6E-11 1.2E-15 84.9 5.1 65 1-65 22-92 (97)
12 1id3_B Histone H4; nucleosome 99.1 7.9E-11 2.7E-15 84.3 6.2 61 2-63 32-98 (102)
13 2hue_C Histone H4; mini beta s 99.1 5.8E-11 2E-15 82.0 5.0 61 2-63 14-80 (84)
14 1tzy_D Histone H4-VI; histone- 99.0 2.7E-10 9.2E-15 81.3 5.9 61 2-63 33-99 (103)
15 2yfw_B Histone H4, H4; cell cy 99.0 4.5E-10 1.5E-14 80.2 5.8 61 2-63 33-99 (103)
16 1ku5_A HPHA, archaeal histon; 98.8 4.2E-09 1.4E-13 69.9 5.2 54 2-56 10-69 (70)
17 1jfi_A Transcription regulator 98.5 7.7E-08 2.6E-12 68.0 3.5 64 1-64 14-83 (98)
18 3vh5_A CENP-S; histone fold, c 97.3 0.00026 8.9E-09 53.5 5.2 67 4-76 25-99 (140)
19 4dra_A Centromere protein S; D 97.3 0.0005 1.7E-08 50.2 5.9 68 4-77 33-108 (113)
20 2ly8_A Budding yeast chaperone 97.1 0.00068 2.3E-08 50.0 5.3 51 11-61 58-115 (121)
21 2nqb_D Histone H2B; nucleosome 97.1 0.00076 2.6E-08 50.0 5.1 55 4-58 39-99 (123)
22 1tzy_B Histone H2B; histone-fo 97.0 0.00086 2.9E-08 49.9 5.1 55 4-58 42-102 (126)
23 3v9r_A MHF1, uncharacterized p 96.9 0.0013 4.4E-08 46.1 5.2 54 4-57 18-79 (90)
24 3b0b_B CENP-S, centromere prot 96.9 0.0021 7.3E-08 46.3 5.9 67 4-76 25-99 (107)
25 2jss_A Chimera of histone H2B. 96.5 0.0039 1.3E-07 48.4 5.3 55 4-58 9-69 (192)
26 2l5a_A Histone H3-like centrom 96.0 0.0051 1.7E-07 49.9 3.8 44 16-59 178-227 (235)
27 1taf_B TFIID TBP associated fa 95.7 0.022 7.7E-07 38.1 5.4 54 2-56 10-69 (70)
28 1id3_C Histone H2A.1; nucleoso 95.1 0.039 1.4E-06 40.7 5.5 56 2-57 29-90 (131)
29 2nqb_C Histone H2A; nucleosome 95.1 0.036 1.2E-06 40.4 5.2 56 2-57 27-88 (123)
30 2f8n_G Core histone macro-H2A. 95.1 0.034 1.2E-06 40.4 5.1 56 2-57 26-87 (120)
31 1f66_C Histone H2A.Z; nucleoso 95.0 0.042 1.4E-06 40.4 5.5 55 3-57 32-93 (128)
32 1tzy_A Histone H2A-IV; histone 94.9 0.041 1.4E-06 40.5 5.3 56 2-57 29-90 (129)
33 2f8n_K Histone H2A type 1; nuc 94.6 0.057 1.9E-06 40.9 5.5 56 2-57 48-109 (149)
34 1h3o_B Transcription initiatio 93.8 0.14 4.6E-06 34.8 5.5 55 3-57 10-70 (76)
35 2jss_A Chimera of histone H2B. 93.2 0.15 5.1E-06 39.3 5.5 43 15-57 123-171 (192)
36 2hue_B Histone H3; mini beta s 92.9 0.3 1E-05 33.1 6.0 48 12-59 21-74 (77)
37 1taf_A TFIID TBP associated fa 92.4 0.38 1.3E-05 31.8 5.9 42 16-57 18-65 (68)
38 3nqj_A Histone H3-like centrom 91.6 0.31 1.1E-05 33.4 4.9 44 13-56 24-73 (82)
39 2yfv_A Histone H3-like centrom 87.9 1.1 3.7E-05 31.6 5.4 42 14-55 50-97 (100)
40 1bh9_B TAFII28; histone fold, 87.6 0.64 2.2E-05 32.1 4.0 55 3-58 21-82 (89)
41 3r45_A Histone H3-like centrom 85.9 0.98 3.3E-05 34.5 4.5 43 14-56 99-147 (156)
42 1tzy_C Histone H3; histone-fol 85.8 1.4 4.9E-05 32.7 5.3 46 13-58 81-132 (136)
43 3nqu_A Histone H3-like centrom 85.5 1.1 3.9E-05 33.4 4.7 46 14-59 83-134 (140)
44 3kw6_A 26S protease regulatory 71.8 4.2 0.00014 25.8 3.5 32 27-58 42-73 (78)
45 2f3n_A SH3 and multiple ankyri 67.6 4.2 0.00014 26.2 2.8 23 46-68 5-27 (76)
46 3bq7_A Diacylglycerol kinase d 65.1 4.9 0.00017 26.2 2.8 24 45-68 9-32 (81)
47 1khy_A CLPB protein; alpha hel 64.1 9.8 0.00033 26.2 4.4 28 32-59 15-42 (148)
48 2d8c_A Phosphatidylcholine:cer 61.0 4 0.00014 28.1 1.9 23 45-67 19-41 (97)
49 4dra_E Centromere protein X; D 60.7 14 0.00047 25.2 4.5 45 13-57 29-79 (84)
50 3aji_B S6C, proteasome (prosom 60.0 9.3 0.00032 24.3 3.5 35 25-59 38-72 (83)
51 2dzn_B 26S protease regulatory 59.7 11 0.00037 24.2 3.8 33 27-59 37-69 (82)
52 3vlf_B 26S protease regulatory 59.3 10 0.00034 24.9 3.6 34 27-60 40-73 (88)
53 2y1q_A CLPC N-domain, negative 59.3 7.8 0.00027 26.8 3.2 28 32-59 15-42 (150)
54 1kw4_A Polyhomeotic; SAM domai 58.7 6.9 0.00024 26.3 2.7 24 45-68 16-40 (89)
55 1k6k_A ATP-dependent CLP prote 57.4 6.5 0.00022 27.0 2.5 25 32-56 11-35 (143)
56 3fh2_A Probable ATP-dependent 55.7 8.5 0.00029 26.9 2.9 27 32-58 16-42 (146)
57 3v9r_B MHF2, uncharacterized p 55.3 9.1 0.00031 26.6 2.9 33 12-44 17-51 (88)
58 2krk_A 26S protease regulatory 54.9 13 0.00044 24.4 3.5 32 27-58 50-81 (86)
59 3fes_A ATP-dependent CLP endop 52.2 15 0.00051 25.7 3.7 28 32-59 17-44 (145)
60 5pal_A Parvalbumin; calcium-bi 52.2 29 0.00099 21.8 4.9 52 23-74 26-89 (109)
61 2gle_A Neurabin-1; SAM domain, 48.4 3.9 0.00013 25.9 0.1 22 46-67 7-28 (74)
62 3b0b_C CENP-X, centromere prot 46.5 30 0.001 23.2 4.4 54 4-57 14-75 (81)
63 2fi0_A Conserved domain protei 46.5 9.1 0.00031 25.1 1.7 23 39-61 54-76 (81)
64 2e8o_A SAM domain and HD domai 45.4 10 0.00036 25.8 1.9 21 45-65 29-51 (103)
65 1tiz_A Calmodulin-related prot 43.5 42 0.0015 18.8 4.6 36 38-73 10-45 (67)
66 3uk6_A RUVB-like 2; hexameric 43.4 15 0.00052 28.5 2.8 28 30-57 302-329 (368)
67 3fwb_A Cell division control p 43.2 51 0.0017 21.6 5.2 35 38-72 105-139 (161)
68 2pvb_A Protein (parvalbumin); 42.3 61 0.0021 20.2 5.4 66 5-74 12-89 (108)
69 3h4m_A Proteasome-activating n 42.3 24 0.00082 26.3 3.7 33 26-58 226-258 (285)
70 2c9o_A RUVB-like 1; hexameric 41.9 14 0.00047 30.6 2.5 41 30-70 409-450 (456)
71 4a4j_A Pacszia, cation-transpo 41.3 14 0.00048 21.5 1.9 18 44-61 48-65 (69)
72 1pk1_B Sex COMB on midleg CG94 40.0 15 0.00051 24.7 2.0 24 45-68 16-41 (89)
73 4ds7_A Calmodulin, CAM; protei 39.5 73 0.0025 20.3 6.2 37 38-74 93-129 (147)
74 1pva_A Parvalbumin; calcium bi 38.3 71 0.0024 19.9 5.4 52 23-74 27-90 (110)
75 3iwl_A Copper transport protei 38.1 18 0.00061 21.4 2.0 17 45-61 45-61 (68)
76 3bs7_A Protein aveugle; sterIl 37.2 18 0.00062 22.9 2.0 22 46-67 6-29 (78)
77 1bu3_A Calcium-binding protein 37.0 70 0.0024 19.9 4.9 66 5-74 13-90 (109)
78 3h4s_E KCBP interacting Ca2+-b 36.9 59 0.002 21.7 4.8 38 35-72 46-84 (135)
79 1exr_A Calmodulin; high resolu 36.7 88 0.003 20.4 6.4 38 36-73 90-127 (148)
80 2lv7_A Calcium-binding protein 36.4 37 0.0013 22.3 3.5 41 33-73 40-80 (100)
81 1rwy_A Parvalbumin alpha; EF-h 36.3 77 0.0026 19.7 5.2 65 5-73 12-88 (109)
82 3fh2_A Probable ATP-dependent 36.1 46 0.0016 23.0 4.2 29 31-59 90-118 (146)
83 3fs7_A Parvalbumin, thymic; ca 36.0 79 0.0027 19.7 5.4 52 23-74 27-90 (109)
84 2ktg_A Calmodulin, putative; e 35.5 59 0.002 19.3 4.2 38 36-73 21-58 (85)
85 2kz2_A Calmodulin, CAM; TR2C, 35.4 66 0.0023 20.2 4.6 37 36-72 36-72 (94)
86 3fes_A ATP-dependent CLP endop 35.3 39 0.0013 23.5 3.7 30 30-59 89-118 (145)
87 1s6j_A CDPK, calcium-dependent 35.0 62 0.0021 19.3 4.3 38 37-74 31-68 (87)
88 1avs_A Troponin C; muscle cont 34.2 78 0.0027 19.1 4.8 37 37-73 28-64 (90)
89 1ixs_A Holliday junction DNA h 34.1 20 0.00067 22.7 1.7 14 49-62 18-31 (62)
90 2i7a_A Calpain 13; calcium-dep 33.8 96 0.0033 21.9 5.7 50 22-72 64-122 (174)
91 2bl0_C Myosin regulatory light 33.8 93 0.0032 19.9 5.6 36 39-74 89-124 (142)
92 1v85_A Similar to ring finger 33.7 16 0.00056 24.2 1.4 24 44-67 18-43 (91)
93 2joj_A Centrin protein; N-term 33.7 54 0.0018 19.0 3.7 34 38-71 16-49 (77)
94 3dxs_X Copper-transporting ATP 33.5 18 0.00061 21.4 1.4 18 44-61 49-66 (74)
95 3qrx_A Centrin; calcium-bindin 32.9 1.1E+02 0.0036 20.2 6.4 37 38-74 110-146 (169)
96 3zri_A CLPB protein, CLPV; cha 32.4 34 0.0011 25.2 3.1 28 32-59 34-61 (171)
97 3sjs_A URE3-BP sequence specif 32.2 1E+02 0.0034 22.4 5.7 51 23-73 106-161 (220)
98 2p2u_A HOST-nuclease inhibitor 32.1 22 0.00074 26.6 2.0 19 47-65 108-126 (171)
99 1fnn_A CDC6P, cell division co 31.8 80 0.0027 24.2 5.3 38 31-68 247-284 (389)
100 3k1j_A LON protease, ATP-depen 31.8 70 0.0024 27.5 5.4 28 30-57 347-374 (604)
101 1lv7_A FTSH; alpha/beta domain 31.6 52 0.0018 24.2 4.1 33 27-59 221-253 (257)
102 2kn2_A Calmodulin; S MAPK phos 31.1 89 0.003 18.8 4.8 34 38-71 18-51 (92)
103 2ovk_B RLC, myosin regulatory 30.6 55 0.0019 21.5 3.7 34 39-72 95-128 (153)
104 3ox6_A Calcium-binding protein 30.5 1.1E+02 0.0037 19.5 6.0 39 36-74 95-134 (153)
105 3j04_B Myosin regulatory light 30.2 76 0.0026 20.3 4.3 52 22-73 57-120 (143)
106 4b4t_L 26S protease subunit RP 29.9 43 0.0015 28.4 3.7 32 26-57 390-421 (437)
107 2xmm_A SSR2857 protein, ATX1; 29.9 31 0.001 18.9 2.0 16 46-61 47-62 (64)
108 3bs5_A Protein aveugle; sterIl 29.8 27 0.00092 24.0 2.0 23 45-67 25-49 (106)
109 2opo_A Polcalcin CHE A 3; calc 29.7 86 0.0029 18.6 4.2 35 37-72 19-53 (86)
110 3li6_A Calcium-binding protein 29.2 33 0.0011 19.3 2.1 23 38-60 9-31 (66)
111 4b4t_M 26S protease regulatory 29.2 45 0.0015 28.3 3.7 33 26-58 390-422 (434)
112 2l5a_A Histone H3-like centrom 29.2 85 0.0029 25.1 5.1 46 14-59 34-85 (235)
113 3ksy_A SOS-1, SON of sevenless 29.1 48 0.0016 31.0 4.1 37 21-57 124-168 (1049)
114 1alv_A Calpain, S-camld; calci 29.1 1.3E+02 0.0044 20.2 5.5 52 22-73 65-121 (173)
115 2y1q_A CLPC N-domain, negative 29.0 47 0.0016 22.7 3.2 28 31-58 88-115 (150)
116 4b4t_I 26S protease regulatory 29.0 46 0.0016 28.6 3.7 32 26-57 391-422 (437)
117 2mys_B Myosin; muscle protein, 28.8 1.3E+02 0.0043 19.9 5.4 33 39-71 105-137 (166)
118 3ezq_B Protein FADD; apoptosis 28.8 36 0.0012 24.1 2.6 29 46-74 64-92 (122)
119 2ovk_C Myosin catalytic light 28.7 1.3E+02 0.0043 19.8 5.7 51 22-72 64-128 (159)
120 2pmy_A RAS and EF-hand domain- 28.6 77 0.0026 19.5 4.0 28 34-61 32-59 (91)
121 1k94_A Grancalcin; penta-EF-ha 28.5 1.3E+02 0.0045 19.9 6.3 53 22-74 58-115 (165)
122 2obh_A Centrin-2; DNA repair c 28.4 1.3E+02 0.0043 19.7 6.4 34 39-72 89-122 (143)
123 1j7q_A CAVP, calcium vector pr 28.2 64 0.0022 19.3 3.4 30 37-66 22-51 (86)
124 1uhk_A Aequorin 2, aequorin; E 28.1 1.2E+02 0.0041 20.3 5.2 36 35-70 115-150 (191)
125 1rro_A RAT oncomodulin; calciu 27.8 1.1E+02 0.0038 18.9 5.0 36 37-72 49-87 (108)
126 4b4t_H 26S protease regulatory 27.8 47 0.0016 28.8 3.6 33 26-58 418-450 (467)
127 1k6k_A ATP-dependent CLP prote 27.7 47 0.0016 22.5 3.0 29 30-58 87-115 (143)
128 3bs5_B Connector enhancer of k 27.1 41 0.0014 21.3 2.4 23 46-68 7-31 (80)
129 2lmt_A Calmodulin-related prot 27.1 1.1E+02 0.0037 20.3 4.7 39 35-73 89-127 (148)
130 2b1u_A Calmodulin-like protein 27.0 68 0.0023 18.1 3.3 33 39-71 16-48 (71)
131 4b4t_J 26S protease regulatory 26.9 58 0.002 27.6 3.9 34 24-57 355-388 (405)
132 1whz_A Hypothetical protein; a 26.7 33 0.0011 21.3 1.9 18 45-62 4-21 (70)
133 1y9u_A Putative iron binding p 26.3 62 0.0021 24.1 3.7 55 22-76 253-318 (323)
134 1exr_A Calmodulin; high resolu 26.2 1E+02 0.0035 20.1 4.5 20 41-60 22-41 (148)
135 1osd_A MERP, hypothetical prot 25.8 39 0.0013 19.0 2.0 17 45-61 51-67 (72)
136 3pxg_A Negative regulator of g 25.8 65 0.0022 26.8 4.0 34 32-65 15-48 (468)
137 1qv0_A Obelin, OBL; photoprote 25.7 1.1E+02 0.0038 20.6 4.7 35 36-70 120-154 (195)
138 1o7b_T Tumor necrosis factor-i 25.5 53 0.0018 22.6 2.9 29 32-61 17-45 (98)
139 1cc8_A Protein (metallochapero 25.3 37 0.0013 19.9 1.9 16 46-61 51-66 (73)
140 1cpz_A Protein (COPZ); copper 25.1 39 0.0013 18.7 1.9 17 45-61 48-64 (68)
141 2roe_A Heavy metal binding pro 25.1 34 0.0012 19.4 1.6 17 45-61 45-61 (66)
142 1c7v_A CAVP, calcium vector pr 25.0 71 0.0024 18.8 3.2 35 39-73 18-53 (81)
143 1wlz_A DJBP, CAP-binding prote 25.0 1.3E+02 0.0044 18.6 4.8 33 37-69 32-64 (105)
144 2g3q_A Protein YBL047C; endocy 24.9 68 0.0023 18.1 2.9 24 48-73 4-27 (43)
145 2l3m_A Copper-ION-binding prot 24.6 37 0.0013 19.1 1.7 17 45-61 53-69 (71)
146 1wdc_B Scallop myosin; calcium 24.5 1.3E+02 0.0046 19.5 4.8 34 39-72 97-130 (156)
147 3omb_A Extracellular solute-bi 24.5 31 0.0011 28.4 1.8 28 48-75 507-534 (535)
148 1gjy_A Sorcin, CP-22, V19; cal 24.3 1.6E+02 0.0055 19.6 5.5 53 22-74 60-117 (167)
149 1y1x_A Leishmania major homolo 24.1 1.8E+02 0.0062 20.1 6.2 49 23-71 82-135 (191)
150 2znd_A Programmed cell death p 24.1 1.6E+02 0.0056 19.6 6.2 51 22-72 62-117 (172)
151 3sg6_A Gcamp2, myosin light ch 23.9 1.2E+02 0.0042 25.8 5.5 53 22-74 366-430 (450)
152 2ean_A Connector enhancer of k 23.8 47 0.0016 21.2 2.3 23 46-68 11-35 (83)
153 1k9u_A Polcalcin PHL P 7; poll 23.8 97 0.0033 18.0 3.6 21 39-59 13-33 (78)
154 2xmw_A PACS-N, cation-transpor 23.7 33 0.0011 19.2 1.3 16 46-61 51-66 (71)
155 1w7j_B Myosin light chain 1; m 23.6 91 0.0031 20.1 3.7 32 39-70 97-128 (151)
156 2qac_A Myosin A tail domain in 23.4 1.5E+02 0.0053 19.0 4.9 32 39-70 24-56 (146)
157 2qif_A Copper chaperone COPZ; 22.7 43 0.0015 18.2 1.7 17 45-61 50-66 (69)
158 3fwb_A Cell division control p 22.7 1.5E+02 0.0053 19.1 4.8 33 39-71 33-65 (161)
159 3cjk_B Copper-transporting ATP 22.6 49 0.0017 19.0 2.0 17 45-61 50-66 (75)
160 1ixz_A ATP-dependent metallopr 22.6 70 0.0024 23.5 3.3 30 27-56 225-254 (254)
161 2qz4_A Paraplegin; AAA+, SPG7, 22.5 30 0.001 25.2 1.2 29 30-58 221-249 (262)
162 2qby_A CDC6 homolog 1, cell di 22.5 43 0.0015 25.4 2.2 38 30-67 244-281 (386)
163 1aw0_A Menkes copper-transport 22.3 37 0.0013 19.1 1.4 16 46-61 52-67 (72)
164 2mys_C Myosin; muscle protein, 22.2 1.4E+02 0.0048 18.9 4.4 34 41-74 20-53 (149)
165 2d58_A Allograft inflammatory 21.9 1.2E+02 0.004 19.2 3.9 38 37-74 40-77 (107)
166 2kt2_A Mercuric reductase; nme 21.5 44 0.0015 18.7 1.6 16 46-61 48-63 (69)
167 2v1u_A Cell division control p 21.4 59 0.002 24.8 2.7 33 29-61 247-279 (387)
168 3a09_A ALGQ1; sugar binding pr 20.9 44 0.0015 26.5 2.0 26 49-74 464-489 (490)
169 1fvq_A Copper-transporting ATP 20.8 48 0.0016 18.6 1.7 17 45-61 49-65 (72)
170 1juo_A Sorcin; calcium-binding 20.7 2E+02 0.0067 19.9 5.3 52 22-73 91-147 (198)
171 3fry_A Probable copper-exporti 20.7 44 0.0015 19.8 1.5 15 47-61 50-64 (73)
172 3dtp_E RLC, myosin regulatory 20.5 1.1E+02 0.0038 21.4 3.9 49 22-71 107-167 (196)
173 2bkm_A Truncated hemoglobin fr 20.2 1.3E+02 0.0046 20.3 4.2 40 42-81 76-123 (128)
174 4b4t_K 26S protease regulatory 20.1 94 0.0032 26.2 3.9 32 26-57 382-413 (428)
175 1kvi_A Copper-transporting ATP 20.1 50 0.0017 19.2 1.7 17 45-61 56-72 (79)
176 1wdc_C Scallop myosin; calcium 20.1 1.8E+02 0.006 18.9 4.7 51 22-72 64-127 (156)
177 2jjz_A Ionized calcium-binding 20.1 1.3E+02 0.0043 20.4 4.0 34 39-72 60-93 (150)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.93 E-value=1.5e-26 Score=181.26 Aligned_cols=82 Identities=26% Similarity=0.410 Sum_probs=77.0
Q ss_pred ChhHHHH-HhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 1 MARSLRM-LRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 1 ~anv~Ri-k~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
+|||.|| |+.|| +++||+|+ |+++||+|||++|+++|..++||||+++||++||++|||++|+++|+.+|+.
T Consensus 18 ~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~lk~~L~~ 96 (179)
T 1jfi_B 18 RAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQE 96 (179)
T ss_dssp HHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 4899996 66899 99999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCC
Q 032773 74 YREMEGDTKG 83 (134)
Q Consensus 74 yre~~~~Kk~ 83 (134)
||+..+.|+.
T Consensus 97 yre~~~~kkr 106 (179)
T 1jfi_B 97 CKTVALKRRK 106 (179)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhCcc
Confidence 9998776543
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.93 E-value=6.1e-26 Score=168.97 Aligned_cols=89 Identities=25% Similarity=0.353 Sum_probs=78.5
Q ss_pred ChhHHHHHh-ccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 1 MARSLRMLR-ILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 1 ~anv~Rik~-~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
+|+|.||++ .+|++.+||+|+ |+++||+|||++|+++|..++||||+++||++||+.+||.+|+++|+.+|..
T Consensus 12 ~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~lk~~l~~ 91 (128)
T 2byk_B 12 NAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEV 91 (128)
T ss_dssp CSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 589999866 899999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCCC
Q 032773 74 YREMEGDTKGSARGGD 89 (134)
Q Consensus 74 yre~~~~Kk~~~k~~~ 89 (134)
||+..+.||.+++...
T Consensus 92 yr~~~~~kk~~~~~~~ 107 (128)
T 2byk_B 92 YRKVVKEKKESKASKK 107 (128)
T ss_dssp HHHHHTTC--------
T ss_pred HHHHHHhhhhhhhccc
Confidence 9999998887654443
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.89 E-value=1.3e-23 Score=147.50 Aligned_cols=76 Identities=42% Similarity=0.817 Sum_probs=72.5
Q ss_pred ChhHHHH-HhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 1 MARSLRM-LRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 1 ~anv~Ri-k~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
+|+|.|| |+.+|++.+||+|+ |+.+||.||+++|++.|..++||||+++||++||++|||++|++|++.+|++
T Consensus 11 ~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~~~~~~l~~ 90 (93)
T 1n1j_A 11 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQK 90 (93)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhHHHHHHHHHH
Confidence 3789997 66889999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 032773 74 YRE 76 (134)
Q Consensus 74 yre 76 (134)
||+
T Consensus 91 ~r~ 93 (93)
T 1n1j_A 91 FRE 93 (93)
T ss_dssp HHC
T ss_pred HhC
Confidence 985
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.70 E-value=1.4e-17 Score=113.34 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=52.7
Q ss_pred ChhHHHHHh-ccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 1 MARSLRMLR-ILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 1 ~anv~Rik~-~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
+|+|.||++ .+| +++||+|+ |+++||+||+++|++.|..++||||+++||++|++++
T Consensus 7 ~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 7 RGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 489999755 888 79999998 9999999999999999999999999999999998764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.67 E-value=4.2e-17 Score=125.05 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=59.4
Q ss_pred hhHHHH-HhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchH
Q 032773 2 ARSLRM-LRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYID 65 (134)
Q Consensus 2 anv~Ri-k~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~ 65 (134)
|+|.|| |+.||. .+||+|+ |+++|+.||+++|+++|+.++||||+++||+|||..|||++|++
T Consensus 8 a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 8 AAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp HHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred cHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 789996 668888 9999998 99999999999999999999999999999999999999998865
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.45 E-value=9.4e-14 Score=100.94 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=72.4
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH-
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY- 74 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y- 74 (134)
++|.||.+-- ...+||+|+ |+.+|+..|+..|..+|+..+||||+++||++||+..||..|+.++..++++|
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~~l~~~~l 89 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVLVERHL 89 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHHHHHHHHS
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHHHHHHHhC
Confidence 6889986644 788999987 99999999999999999999999999999999999999999999999999999
Q ss_pred -HHHhcccCCCCCCC
Q 032773 75 -REMEGDTKGSARGG 88 (134)
Q Consensus 75 -re~~~~Kk~~~k~~ 88 (134)
+|..+.=.....++
T Consensus 90 p~E~~~~l~~~a~~~ 104 (111)
T 3b0c_T 90 PLEYRKLLIPIAVSG 104 (111)
T ss_dssp CHHHHHHHCCC----
T ss_pred cHHHHHHhccccccC
Confidence 66554333333333
No 7
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.44 E-value=1.5e-14 Score=109.18 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=56.7
Q ss_pred ChhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHh-HhcCCCccChhHHHHHHhh---cCCCcchHHHHHH
Q 032773 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKC-QKEKRKTINGDDLLWAMAT---LGFEDYIDPLKAY 70 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c-~~ekRKTI~~dDVL~AL~e---LgF~dyv~~Lk~~ 70 (134)
+|+|.||++.-|...+||+++ |+..||.+|+.+|...| +..+||||+++||.+|+.. ++|-.++-|.+.+
T Consensus 22 laRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~divP~ki~ 101 (140)
T 2byk_A 22 LSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVPQKIR 101 (140)
T ss_dssp -------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTSCSCC-
T ss_pred HHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhccccchhh
Confidence 588999988889999999998 99999999999999999 9999999999999999985 5666666699999
Q ss_pred HHHHHHHhcccCCC
Q 032773 71 LMRYREMEGDTKGS 84 (134)
Q Consensus 71 L~~yre~~~~Kk~~ 84 (134)
|..|++..+.++..
T Consensus 102 l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 102 VHQFQEMLRLNRSA 115 (140)
T ss_dssp --------------
T ss_pred HHHHHHHHHhcccc
Confidence 99999987766544
No 8
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.43 E-value=1.4e-13 Score=90.98 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=52.2
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
|+|.||.+.. ++.+||+|+ |+.+||.+|+++|++.|...+||||+++||.+|++.|
T Consensus 6 a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 6 APIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred cHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 7899986655 789999998 9999999999999999999999999999999999987
No 9
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.28 E-value=2.2e-12 Score=94.41 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=55.7
Q ss_pred ChhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
+|+|.||++.-|+..+||+|| |+.+||.+|+.+|.+.|+.++||||+++||..|++..+
T Consensus 44 vaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 44 LARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp HHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 489999988889999999998 99999999999999999999999999999999998765
No 10
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.16 E-value=2.5e-11 Score=92.92 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=51.2
Q ss_pred ChhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
+|+|.||.+-- ...+||+|+ |.++|+.+|+++|.++|+..+||||+++||++||+..
T Consensus 85 ~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 85 RATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 47899974433 788999998 9999999999999999999999999999999999863
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.15 E-value=3.6e-11 Score=84.90 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=59.4
Q ss_pred ChhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchH
Q 032773 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYID 65 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~ 65 (134)
+|+|.||++.-|...+||+|+ |+..||.+|+.+|.+.|+..+||||+++||.+|++..++-+|..
T Consensus 22 ~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 22 LARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp HHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred HHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 478999888778888999998 99999999999999999999999999999999999988877753
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.13 E-value=7.9e-11 Score=84.35 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=54.4
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcc
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dy 63 (134)
++|.||.+..- -.+||.|+ |+.+||..|+.+|.++|+..+||||+++||.+||+.+||.-|
T Consensus 32 ~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 32 PAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp HHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 68899866442 26899997 999999999999999999999999999999999999999866
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.12 E-value=5.8e-11 Score=82.01 Aligned_cols=61 Identities=21% Similarity=0.160 Sum_probs=54.4
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcc
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dy 63 (134)
++|.||.+..- -.+||.|+ |+.+|+..|+.+|..+|+..+||||+++||.+||+.+||+-|
T Consensus 14 ~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 14 PAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp HHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred HHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 68899866442 26899997 999999999999999999999999999999999999998766
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.04 E-value=2.7e-10 Score=81.28 Aligned_cols=61 Identities=21% Similarity=0.161 Sum_probs=53.9
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcc
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dy 63 (134)
++|.||.+..-. .+||.|+ |..+|+..|..+|..+|+..+||||+++||.+||+.+||+.|
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 33 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 688898554322 5899997 999999999999999999999999999999999999998765
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.01 E-value=4.5e-10 Score=80.21 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=51.0
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcc
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dy 63 (134)
++|.||.+..-. .+||.|+ |..+|+..|..+|..+|+..+||||+++||.+||+.+||+.|
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 33 PAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 678898554323 5899997 999999999999999999999999999999999999998766
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.83 E-value=4.2e-09 Score=69.91 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=48.6
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHh
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~ 56 (134)
++|.||.+.. ...++|+++ |+.+|+..|+..|+..|+..|||||+++||..|++
T Consensus 10 a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 10 APVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 6889975543 578999997 99999999999999999999999999999999986
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.48 E-value=7.7e-08 Score=68.00 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=48.9
Q ss_pred ChhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcch
Q 032773 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYI 64 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv 64 (134)
++.|.||++.-|...+||.++ ++..|+.+|+..|...++..+||||+++||-.|++.-+.-+|.
T Consensus 14 vaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 14 PARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp HHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred hHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 367888888888888999998 8999999999999999999999999999999999875554443
No 18
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.34 E-value=0.00026 Score=53.48 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=49.6
Q ss_pred HHHH-Hh-ccCCCcccccch--hHH----HHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHHH
Q 032773 4 SLRM-LR-ILYRNVSLSSSA--SLP----ASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 4 v~Ri-k~-~LP~n~kISKda--cas----eFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~yr 75 (134)
|.|| .+ ....++.+|.|+ |.+ .|+.-|+..+...|+-.+||||++|||.-+++.- +.|..+|..|.
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~~ 98 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQKS 98 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHHH
Confidence 5666 33 455689999997 444 4445577788888999999999999999999873 45555555555
Q ss_pred H
Q 032773 76 E 76 (134)
Q Consensus 76 e 76 (134)
+
T Consensus 99 ~ 99 (140)
T 3vh5_A 99 D 99 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.27 E-value=0.0005 Score=50.22 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=52.2
Q ss_pred HHHH-Hh-ccCCCcccccch--hHH----HHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHHH
Q 032773 4 SLRM-LR-ILYRNVSLSSSA--SLP----ASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 4 v~Ri-k~-~LP~n~kISKda--cas----eFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~yr 75 (134)
|.|| ++ ....++.+|.++ +.+ .|+.-|+..+...|+-.|||||++|||.-+++. -+.|..+|..|.
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr------~~~L~~~l~~~~ 106 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR------SNSLLKYITDKS 106 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh------CHHHHHHHHHHH
Confidence 6676 33 455689999997 444 444557788888899999999999999999987 467777777776
Q ss_pred HH
Q 032773 76 EM 77 (134)
Q Consensus 76 e~ 77 (134)
+.
T Consensus 107 ~e 108 (113)
T 4dra_A 107 EE 108 (113)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 20
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.00068 Score=49.98 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=43.9
Q ss_pred cCCCc-ccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCC
Q 032773 11 LYRNV-SLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 11 LP~n~-kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~ 61 (134)
-|.++ +||.|+ ...+|+.-|...|..+++-.+||||+++||.-||+..|-.
T Consensus 58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~ 115 (121)
T 2ly8_A 58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 115 (121)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCG
T ss_pred CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCc
Confidence 34454 488876 8889999999999999999999999999999999998754
No 21
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.06 E-value=0.00076 Score=49.96 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=45.6
Q ss_pred HHHHHhccCCCcccccch--hHHHHH----HHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 4 SLRMLRILYRNVSLSSSA--SLPASF----SFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 4 v~Rik~~LP~n~kISKda--caseFI----~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
|+|+-+.+-|++.||.++ ...-|| .=|+.+|...|.-.+|+||++.||-.|.+-|
T Consensus 39 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 39 IYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 678877778889999998 333344 4489999999999999999999999998765
No 22
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.03 E-value=0.00086 Score=49.87 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=45.7
Q ss_pred HHHHHhccCCCcccccch--hHHHHH----HHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 4 SLRMLRILYRNVSLSSSA--SLPASF----SFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 4 v~Rik~~LP~n~kISKda--caseFI----~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
|+|+-+.+-|++.||.++ ...-|| .-|+.+|...+.-.+|+||++.||-.|.+-|
T Consensus 42 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 42 VYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 678877778889999998 333444 3489999999999999999999999998765
No 23
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0013 Score=46.14 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=42.5
Q ss_pred HHHH-HhccCCC-cccccch--hHHHHH----HHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 4 SLRM-LRILYRN-VSLSSSA--SLPASF----SFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 4 v~Ri-k~~LP~n-~kISKda--caseFI----~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
|.+| .+.++.+ +.+|.++ +.++++ .-|+..+...|+-.|||||++|||.-+++.
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4565 5577765 9999998 455544 447888888999999999999999998875
No 24
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=96.87 E-value=0.0021 Score=46.31 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=49.2
Q ss_pred HHHHHh--ccCCCcccccch--hHH----HHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHHH
Q 032773 4 SLRMLR--ILYRNVSLSSSA--SLP----ASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 4 v~Rik~--~LP~n~kISKda--cas----eFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~yr 75 (134)
|.||-+ ....+.++|.++ |.+ .|+.-|+..|...|+-.|||||++|||.-|++.. +.|...|..|.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~~ 98 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQKS 98 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHHH
Confidence 566633 334578999997 444 4455588888999999999999999999999884 45555555555
Q ss_pred H
Q 032773 76 E 76 (134)
Q Consensus 76 e 76 (134)
+
T Consensus 99 ~ 99 (107)
T 3b0b_B 99 D 99 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.48 E-value=0.0039 Score=48.39 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=44.3
Q ss_pred HHHHHhccCCCcccccch--hHHHH----HHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 4 SLRMLRILYRNVSLSSSA--SLPAS----FSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 4 v~Rik~~LP~n~kISKda--caseF----I~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
|+|+-+..-|+..||.|+ ....| ..-|+.+|...+...+|+||+++||-.|.+-+
T Consensus 9 i~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 9 IYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 577755556688999998 44444 44689999999999999999999999998754
No 26
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0051 Score=49.86 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=38.8
Q ss_pred ccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 16 SLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 16 kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
+||.++ ...+|+.-|...|..+|+-.+||||+++||.-||+.+|
T Consensus 178 RIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 178 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 466665 77889999999999999999999999999999999764
No 27
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=95.68 E-value=0.022 Score=38.05 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=41.4
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHh
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~ 56 (134)
++|.||-+.+-- .++|.|+ -+..-+.-|..+|...++..||||++++||=.||+
T Consensus 10 ~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 10 ESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 467777665532 3677776 34445567889999999999999999999998875
No 28
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.07 E-value=0.039 Score=40.70 Aligned_cols=56 Identities=21% Similarity=0.141 Sum_probs=37.4
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
+.|.|+.+.-...-+|+.++ +.--|+.-|.-.|-..|+..+|++|+++||-.|+..
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 29 GRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 45666544322233899987 222333345555777888899999999999999874
No 29
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=95.06 E-value=0.036 Score=40.44 Aligned_cols=56 Identities=18% Similarity=0.110 Sum_probs=36.7
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
+.|.|+.+.--..-+|+.++ +.-.|..-|.-.|-..|...+|++|+++||-.|+..
T Consensus 27 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 27 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 45666533222223899887 222233344456777778899999999999999874
No 30
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.05 E-value=0.034 Score=40.42 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=36.5
Q ss_pred hhHHHHHhccCCCcccccch--hHHHHHHH----HHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 2 ARSLRMLRILYRNVSLSSSA--SLPASFSF----LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda--caseFI~y----lTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
+.|.|+.+.--..-+|+.++ ..+.-+-| |.-.|-..|+..+|++|+++||-.|+..
T Consensus 26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 45666533222234899887 22222334 4445666778889999999999999874
No 31
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=95.03 E-value=0.042 Score=40.43 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=35.8
Q ss_pred hHHHHHh-ccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 3 RSLRMLR-ILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 3 nv~Rik~-~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
.|.|+.+ .-....+|+.++ +.--|...|...|-..|...+|++|+++||-.|+..
T Consensus 32 ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 32 RIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 3445422 322334899988 222233345555667778889999999999999864
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=94.93 E-value=0.041 Score=40.52 Aligned_cols=56 Identities=20% Similarity=0.128 Sum_probs=37.0
Q ss_pred hhHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
+.|.|+.+.--..-+|+.++ +.-.|..-|.-.|-..|...+|++|+++||-.|+..
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 29 GRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 45667533222223899987 222233345555777788899999999999999874
No 33
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=94.64 E-value=0.057 Score=40.86 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=36.4
Q ss_pred hhHHHHHhccCCCcccccch--hHHHHHHH----HHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 2 ARSLRMLRILYRNVSLSSSA--SLPASFSF----LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKda--caseFI~y----lTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
+.|.|+.+.--..-+|+.+| ..+.-+-| |.-.|-..|...+|++|+++||-.|++.
T Consensus 48 grI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 48 GRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 45666533222223888887 22222334 4455677778899999999999999874
No 34
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=93.83 E-value=0.14 Score=34.77 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=47.7
Q ss_pred hHHHHHhccCCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 3 RSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 3 nv~Rik~~LP~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
++.-+.+.+.|+..+..|+ .|.+||.-+++.|...|+..+-.||.+.||.-.|+.
T Consensus 10 ~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 10 KLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 3444566778999998886 999999999999999999999999999999888764
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=93.17 E-value=0.15 Score=39.35 Aligned_cols=43 Identities=21% Similarity=0.086 Sum_probs=31.4
Q ss_pred cccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 15 VSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 15 ~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
.+|+.++ +.-.++.-|.-.|...|...+|++|+|+||-.|+..
T Consensus 123 ~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 123 TRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp CCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 5899987 222333345555677778889999999999999873
No 36
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=92.87 E-value=0.3 Score=33.08 Aligned_cols=48 Identities=25% Similarity=0.131 Sum_probs=39.6
Q ss_pred CCCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 12 YRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 12 P~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
-.+.+++.+| ++-.|+--|...|+..+.-.||+||.++|+--|..--|
T Consensus 21 ~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 21 KTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp CSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 3578999887 66667778889999999999999999999988765433
No 37
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=92.38 E-value=0.38 Score=31.78 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=32.0
Q ss_pred ccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 16 SLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 16 kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
+++.++ .+-.++.=|..+|..+|.-.+||||++|||--|++.
T Consensus 18 ~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 18 EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 455555 344444457788999999999999999999888764
No 38
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=91.55 E-value=0.31 Score=33.40 Aligned_cols=44 Identities=18% Similarity=0.021 Sum_probs=37.2
Q ss_pred CCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHh
Q 032773 13 RNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 13 ~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~ 56 (134)
.+.+++.+| ++-.|+--|...||-.|.-.||+||.++|+--|..
T Consensus 24 ~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 24 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 367888887 66777778889999999999999999999977754
No 39
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=87.90 E-value=1.1 Score=31.64 Aligned_cols=42 Identities=24% Similarity=0.067 Sum_probs=35.3
Q ss_pred Ccccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHH
Q 032773 14 NVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAM 55 (134)
Q Consensus 14 n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL 55 (134)
+.+++.+| ++-.|+--|...|+-.|.-.||+||.+.|+--|.
T Consensus 50 ~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 50 PLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp -CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 78888887 6666777888999999999999999999997664
No 40
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=87.58 E-value=0.64 Score=32.11 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=41.1
Q ss_pred hHHHHHhccCCCcccccc------hhHHHHHHHHHhHhhHHhHhcC-CCccChhHHHHHHhhc
Q 032773 3 RSLRMLRILYRNVSLSSS------ASLPASFSFLSCRASDKCQKEK-RKTINGDDLLWAMATL 58 (134)
Q Consensus 3 nv~Rik~~LP~n~kISKd------acaseFI~ylTSeAnd~c~~ek-RKTI~~dDVL~AL~eL 58 (134)
+|.|+...+ -+..++.+ ..+.+||.=|+.+|-+++...+ ...|-|.||-+|...|
T Consensus 21 ~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 21 AIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 566665533 13444444 3889999999999999998865 5589999999998765
No 41
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=85.86 E-value=0.98 Score=34.45 Aligned_cols=43 Identities=19% Similarity=0.037 Sum_probs=36.6
Q ss_pred Ccccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHh
Q 032773 14 NVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 14 n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~ 56 (134)
+.+++.+| ++-.|+--|...|+-.|.-.||+||.++||--|+.
T Consensus 99 ~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArr 147 (156)
T 3r45_A 99 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 147 (156)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 67888887 67777778889999999999999999999977754
No 42
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=85.80 E-value=1.4 Score=32.66 Aligned_cols=46 Identities=24% Similarity=0.083 Sum_probs=38.5
Q ss_pred CCcccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 13 RNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 13 ~n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
.+.+++.+| ++-.|+--|...|+..+.-.+|+||.++||--|..--
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rir 132 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHh
Confidence 578898887 6666777888999999999999999999998776543
No 43
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=85.51 E-value=1.1 Score=33.44 Aligned_cols=46 Identities=20% Similarity=0.062 Sum_probs=38.3
Q ss_pred Ccccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 14 NVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 14 n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
+.+++.+| ++-.|+--|...||-.|.-.+|+||.++||--|+.--|
T Consensus 83 ~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg 134 (140)
T 3nqu_A 83 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134 (140)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcc
Confidence 67888887 77778888889999999999999999999987765433
No 44
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=71.84 E-value=4.2 Score=25.77 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=27.5
Q ss_pred HHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 27 I~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
|.-|-.+|.-.|..+++..|+.+|+..||+.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 55677888888999999999999999999764
No 45
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=67.55 E-value=4.2 Score=26.23 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=19.2
Q ss_pred cChhHHHHHHhhcCCCcchHHHH
Q 032773 46 INGDDLLWAMATLGFEDYIDPLK 68 (134)
Q Consensus 46 I~~dDVL~AL~eLgF~dyv~~Lk 68 (134)
=+++||..-|+.+||++|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 37899999999999999886543
No 46
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=65.05 E-value=4.9 Score=26.19 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.1
Q ss_pred ccChhHHHHHHhhcCCCcchHHHH
Q 032773 45 TINGDDLLWAMATLGFEDYIDPLK 68 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~dyv~~Lk 68 (134)
.=+++||..-|+.+||++|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 357899999999999999986543
No 47
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=64.06 E-value=9.8 Score=26.18 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=24.5
Q ss_pred hHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 32 CRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 32 SeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
..|.+.|...+...|.++|+|.||=+-+
T Consensus 15 ~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 15 ADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 5788999999999999999999996544
No 48
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=60.97 E-value=4 Score=28.14 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.2
Q ss_pred ccChhHHHHHHhhcCCCcchHHH
Q 032773 45 TINGDDLLWAMATLGFEDYIDPL 67 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~dyv~~L 67 (134)
.-++|||..-|+++||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 35899999999999999999765
No 49
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=60.69 E-value=14 Score=25.23 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=32.4
Q ss_pred CCcccccch--hHHHHHHHHHhHh----hHHhHhcCCCccChhHHHHHHhh
Q 032773 13 RNVSLSSSA--SLPASFSFLSCRA----SDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 13 ~n~kISKda--caseFI~ylTSeA----nd~c~~ekRKTI~~dDVL~AL~e 57 (134)
++++|++|+ ...+++..+..|| .+.++.++..+|..+|+-+-+-.
T Consensus 29 ~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQ 79 (84)
T 4dra_E 29 DKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQ 79 (84)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 789999998 6666666555555 44556677788999998665543
No 50
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=60.00 E-value=9.3 Score=24.30 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=28.8
Q ss_pred HHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 25 ASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 25 eFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
-=|.-|..+|.-.|..+.+..|+.+|+..|++..-
T Consensus 38 ADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 38 ADINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 33555678888889999999999999999998763
No 51
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=59.65 E-value=11 Score=24.17 Aligned_cols=33 Identities=24% Similarity=0.116 Sum_probs=27.4
Q ss_pred HHHHHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 27 I~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
|.-|..+|.-.|..+.+..|+-+|+..|++..-
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 344667888888888999999999999998863
No 52
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=59.33 E-value=10 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=28.4
Q ss_pred HHHHHhHhhHHhHhcCCCccChhHHHHHHhhcCC
Q 032773 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 27 I~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF 60 (134)
|.-|-.+|.-.|.++.+..|+-+|+..|++.+-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5566678888888999999999999999987643
No 53
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=59.25 E-value=7.8 Score=26.83 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=24.4
Q ss_pred hHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 32 CRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 32 SeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
..|.+.|...+...|.++|+|.||=+-+
T Consensus 15 ~~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 15 ALAQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 5788999999999999999999986544
No 54
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=58.71 E-value=6.9 Score=26.31 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=20.1
Q ss_pred ccChhHHHHHHhhc-CCCcchHHHH
Q 032773 45 TINGDDLLWAMATL-GFEDYIDPLK 68 (134)
Q Consensus 45 TI~~dDVL~AL~eL-gF~dyv~~Lk 68 (134)
.-+++||..-|+.+ ||++|++..+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45889999999999 9999886654
No 55
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=57.43 E-value=6.5 Score=27.03 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.6
Q ss_pred hHhhHHhHhcCCCccChhHHHHHHh
Q 032773 32 CRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 32 SeAnd~c~~ekRKTI~~dDVL~AL~ 56 (134)
..|.+.|...+...|.++|+|.||=
T Consensus 11 ~~A~~~A~~~~~~~i~~eHlLlaLl 35 (143)
T 1k6k_A 11 NMAFARAREHRHEFMTVEHLLLALL 35 (143)
T ss_dssp HHHHHHHHHHTBSEECHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 5788999999999999999999983
No 56
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=55.66 E-value=8.5 Score=26.95 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=24.1
Q ss_pred hHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 32 CRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 32 SeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
..|.+.|..-+...|.++|+|.||=+-
T Consensus 16 ~~A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 16 VLAQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhC
Confidence 678899999999999999999998654
No 57
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=55.27 E-value=9.1 Score=26.60 Aligned_cols=33 Identities=3% Similarity=0.091 Sum_probs=26.6
Q ss_pred CCCcccccch--hHHHHHHHHHhHhhHHhHhcCCC
Q 032773 12 YRNVSLSSSA--SLPASFSFLSCRASDKCQKEKRK 44 (134)
Q Consensus 12 P~n~kISKda--caseFI~ylTSeAnd~c~~ekRK 44 (134)
-++++|++|+ .+.+.|.....||--.|..+++.
T Consensus 17 ~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 17 GNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp SSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3789999999 88888887778888888666555
No 58
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=54.94 E-value=13 Score=24.43 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=26.3
Q ss_pred HHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 27 I~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
|.-|-.+|.-.|.++.+..|+-+|+..|++..
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34466788888888889999999999998763
No 59
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=52.25 E-value=15 Score=25.68 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=24.7
Q ss_pred hHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 32 CRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 32 SeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
..|.+.|..-+...|.++|+|.||=+-+
T Consensus 17 ~~A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 17 DLAFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 6788999999999999999999986654
No 60
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=52.21 E-value=29 Score=21.84 Aligned_cols=52 Identities=15% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHHHh---------HhhHHhHhcCCCccChhHHHHHHhhc---CCCcchHHHHHHHHHH
Q 032773 23 LPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMRY 74 (134)
Q Consensus 23 aseFI~ylTS---------eAnd~c~~ekRKTI~~dDVL~AL~eL---gF~dyv~~Lk~~L~~y 74 (134)
-.+|+.++.. .+-...-.++...|+.+++..+|..+ |..---+.++..+..+
T Consensus 26 ~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 26 YKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3557776643 23344455778899999999999998 7665555666665544
No 61
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=48.42 E-value=3.9 Score=25.92 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=17.8
Q ss_pred cChhHHHHHHhhcCCCcchHHH
Q 032773 46 INGDDLLWAMATLGFEDYIDPL 67 (134)
Q Consensus 46 I~~dDVL~AL~eLgF~dyv~~L 67 (134)
=+++||..-|+.+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4689999999999988776543
No 62
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=46.54 E-value=30 Score=23.22 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=36.0
Q ss_pred HHHH-HhccC-CCcccccch--hHHHHHHHHHhHhhHHh----HhcCCCccChhHHHHHHhh
Q 032773 4 SLRM-LRILY-RNVSLSSSA--SLPASFSFLSCRASDKC----QKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 4 v~Ri-k~~LP-~n~kISKda--caseFI~ylTSeAnd~c----~~ekRKTI~~dDVL~AL~e 57 (134)
|.|| +..-. ++++|++|| ...+++.....||-..| +.++-..|..+|+=+.+-.
T Consensus 14 I~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pq 75 (81)
T 3b0b_C 14 VERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQ 75 (81)
T ss_dssp HHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHH
Confidence 3454 33333 689999999 66777776666665544 4567788999998665443
No 63
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=46.47 E-value=9.1 Score=25.06 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.7
Q ss_pred HhcCCCccChhHHHHHHhhcCCC
Q 032773 39 QKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~ 61 (134)
+.-.++-|+.|.++.+|+++||+
T Consensus 54 ~aa~~~gid~d~l~~~L~~~g~~ 76 (81)
T 2fi0_A 54 QGSKLAGTPMDKIVRTLEANGYE 76 (81)
T ss_dssp HHHHHHTCCHHHHHHHHHHTTCE
T ss_pred HHHHHcCCCHHHHHHHHHHcCCE
Confidence 44467779999999999999996
No 64
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.44 E-value=10 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.3
Q ss_pred ccChhHHHHHHhhcCCCc--chH
Q 032773 45 TINGDDLLWAMATLGFED--YID 65 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~d--yv~ 65 (134)
.=+++||..-|+.+||++ |++
T Consensus 29 ~Ws~~~V~~WL~~lgl~~~~y~~ 51 (103)
T 2e8o_A 29 TWGPEQVCSFLRRGGFEEPVLLK 51 (103)
T ss_dssp GCHHHHHHHHHHHHTCCCHHHHH
T ss_pred hCCHHHHHHHHHHcCCChHHHHH
Confidence 357899999999999997 554
No 65
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=43.53 E-value=42 Score=18.77 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=25.0
Q ss_pred hHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 38 c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
.-.++...|+.+++..+|..+|..--.+.+...+..
T Consensus 10 ~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 45 (67)
T 1tiz_A 10 FDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEE 45 (67)
T ss_dssp HCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 345677789999999999999876444455544443
No 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=43.35 E-value=15 Score=28.46 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 30 LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 30 lTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
+-..|...|..+++++|+.+||-.|++.
T Consensus 302 ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 302 LITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3345566777789999999999999986
No 67
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=43.23 E-value=51 Score=21.55 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=25.3
Q ss_pred hHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 38 c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
.-.++...|+.+++..+|..+|..--.+.+...+.
T Consensus 105 ~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 139 (161)
T 3fwb_A 105 FDDDHTGKISIKNLRRVAKELGETLTDEELRAMIE 139 (161)
T ss_dssp HCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34567788999999999999987654455555443
No 68
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=42.34 E-value=61 Score=20.20 Aligned_cols=66 Identities=17% Similarity=0.059 Sum_probs=38.7
Q ss_pred HHHHhccCCCcccccchhHHHHHHHHHh---------HhhHHhHhcCCCccChhHHHHHHhhc---CCCcchHHHHHHHH
Q 032773 5 LRMLRILYRNVSLSSSASLPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLM 72 (134)
Q Consensus 5 ~Rik~~LP~n~kISKdacaseFI~ylTS---------eAnd~c~~ekRKTI~~dDVL~AL~eL---gF~dyv~~Lk~~L~ 72 (134)
..|.+.+..+-.|+- .+|+.++.. .+-...-.++..+|+.+++..+|..+ |..--.+.+...+.
T Consensus 12 ~~l~~~~d~~g~i~~----~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 87 (108)
T 2pvb_A 12 AAALAACSAADSFKH----KEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLA 87 (108)
T ss_dssp HHHHHHTCSTTCCCH----HHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCcCcH----HHHHHHHhCChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 344444433444444 456665532 23333445677899999999999999 65544455555554
Q ss_pred HH
Q 032773 73 RY 74 (134)
Q Consensus 73 ~y 74 (134)
.+
T Consensus 88 ~~ 89 (108)
T 2pvb_A 88 DG 89 (108)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 69
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=42.27 E-value=24 Score=26.33 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=27.0
Q ss_pred HHHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 26 FI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
-|.-+..+|...|..+++.+|+.+|+..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455577788888888899999999999988754
No 70
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=41.85 E-value=14 Score=30.62 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=28.3
Q ss_pred HHhHhhHHhHhcCCCccChhHHHHHHhhc-CCCcchHHHHHH
Q 032773 30 LSCRASDKCQKEKRKTINGDDLLWAMATL-GFEDYIDPLKAY 70 (134)
Q Consensus 30 lTSeAnd~c~~ekRKTI~~dDVL~AL~eL-gF~dyv~~Lk~~ 70 (134)
+-..|.++|..+++.+|+.+||..|+.-+ +...-++.|+++
T Consensus 409 ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~~~ 450 (456)
T 2c9o_A 409 LLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQ 450 (456)
T ss_dssp THHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44566777888899999999999998764 444444444443
No 71
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=41.35 E-value=14 Score=21.48 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=16.1
Q ss_pred CccChhHHHHHHhhcCCC
Q 032773 44 KTINGDDLLWAMATLGFE 61 (134)
Q Consensus 44 KTI~~dDVL~AL~eLgF~ 61 (134)
..++.++|+.+++++||+
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 468899999999999996
No 72
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=40.04 E-value=15 Score=24.75 Aligned_cols=24 Identities=4% Similarity=0.005 Sum_probs=19.7
Q ss_pred ccChhHHHHHHhhc--CCCcchHHHH
Q 032773 45 TINGDDLLWAMATL--GFEDYIDPLK 68 (134)
Q Consensus 45 TI~~dDVL~AL~eL--gF~dyv~~Lk 68 (134)
.=+.+||..-|+.+ ||++|++..+
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~ 41 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFR 41 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHH
Confidence 45889999999998 7999887554
No 73
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=39.49 E-value=73 Score=20.31 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=27.6
Q ss_pred hHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 38 c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
.-.++...|+.+++..+|..+|..---+.+...+..+
T Consensus 93 ~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 93 FDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred hCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3456788899999999999998665555666665554
No 74
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=38.27 E-value=71 Score=19.86 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=32.9
Q ss_pred HHHHHHHHHh---------HhhHHhHhcCCCccChhHHHHHHhhc---CCCcchHHHHHHHHHH
Q 032773 23 LPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMRY 74 (134)
Q Consensus 23 aseFI~ylTS---------eAnd~c~~ekRKTI~~dDVL~AL~eL---gF~dyv~~Lk~~L~~y 74 (134)
-.+|+.++.. .+-...-.++.-+|+.+++..+|..+ |..--.+.++..+..+
T Consensus 27 ~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 90 (110)
T 1pva_A 27 HKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAA 90 (110)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHh
Confidence 3556666531 23344455778899999999999999 5543344555554443
No 75
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=38.14 E-value=18 Score=21.44 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=15.5
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.+++++|+.+++++||+
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 47899999999999997
No 76
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=37.23 E-value=18 Score=22.90 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.9
Q ss_pred cChhHHHHHHhhc--CCCcchHHH
Q 032773 46 INGDDLLWAMATL--GFEDYIDPL 67 (134)
Q Consensus 46 I~~dDVL~AL~eL--gF~dyv~~L 67 (134)
=+++||..-|+.+ ||++|++..
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F 29 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLF 29 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHH
Confidence 3789999999997 888887654
No 77
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=37.03 E-value=70 Score=19.91 Aligned_cols=66 Identities=18% Similarity=0.063 Sum_probs=38.6
Q ss_pred HHHHhccCCCcccccchhHHHHHHHHHh---------HhhHHhHhcCCCccChhHHHHHHhhc---CCCcchHHHHHHHH
Q 032773 5 LRMLRILYRNVSLSSSASLPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLM 72 (134)
Q Consensus 5 ~Rik~~LP~n~kISKdacaseFI~ylTS---------eAnd~c~~ekRKTI~~dDVL~AL~eL---gF~dyv~~Lk~~L~ 72 (134)
.+|.+.+..+-.|+- .+|+.++.. .+-...-.++..+|+.+++..+|..+ |..--.+.++..+.
T Consensus 13 ~~~~~~~d~~g~i~~----~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 88 (109)
T 1bu3_A 13 AAALKACEAADSFNY----KAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLK 88 (109)
T ss_dssp HHHHHHTCSTTCCCH----HHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHH
T ss_pred HHHHHHhCCCCcCcH----HHHHHHHHcChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHH
Confidence 344444433444444 456665532 22333445677889999999999999 55544455555554
Q ss_pred HH
Q 032773 73 RY 74 (134)
Q Consensus 73 ~y 74 (134)
.+
T Consensus 89 ~~ 90 (109)
T 1bu3_A 89 AG 90 (109)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 78
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=36.90 E-value=59 Score=21.70 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=25.8
Q ss_pred hHHhHhcCCCccChhHHHHHHhhcCC-CcchHHHHHHHH
Q 032773 35 SDKCQKEKRKTINGDDLLWAMATLGF-EDYIDPLKAYLM 72 (134)
Q Consensus 35 nd~c~~ekRKTI~~dDVL~AL~eLgF-~dyv~~Lk~~L~ 72 (134)
-...-.++.-.|+.+++..+|..+|+ .--.+.++..+.
T Consensus 46 F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~ 84 (135)
T 3h4s_E 46 FSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVR 84 (135)
T ss_dssp HHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHH
T ss_pred HHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 33445677889999999999999997 322334444443
No 79
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=36.72 E-value=88 Score=20.43 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 36 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 36 d~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
...-.++.-.|+.+++..+|..+|..-=-+.+...+..
T Consensus 90 ~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 127 (148)
T 1exr_A 90 KVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIRE 127 (148)
T ss_dssp HHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 33445677889999999999999865334455555544
No 80
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=36.37 E-value=37 Score=22.26 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=30.9
Q ss_pred HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 33 RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 33 eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
+|-...-.++.-+|+.+++-.+|+.+|+.-=-+.++..+..
T Consensus 40 ~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 40 EAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp HHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 45566677889999999999999999987444555555544
No 81
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=36.27 E-value=77 Score=19.65 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=37.7
Q ss_pred HHHHhccCCCcccccchhHHHHHHHHHh---------HhhHHhHhcCCCccChhHHHHHHhhc---CCCcchHHHHHHHH
Q 032773 5 LRMLRILYRNVSLSSSASLPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLM 72 (134)
Q Consensus 5 ~Rik~~LP~n~kISKdacaseFI~ylTS---------eAnd~c~~ekRKTI~~dDVL~AL~eL---gF~dyv~~Lk~~L~ 72 (134)
.+|.+.+..+-.|+- .+|+.++.. .+-...-.++.-+|+.+++..+|..+ |..--.+.++..+.
T Consensus 12 ~~~~~~~d~~g~i~~----~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 87 (109)
T 1rwy_A 12 KKAIGAFTAADSFDH----KKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMA 87 (109)
T ss_dssp HHHHHTTCSTTCCCH----HHHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCcEeH----HHHHHHHhcCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 344444443334444 456665532 23333445677889999999999999 55433444554444
Q ss_pred H
Q 032773 73 R 73 (134)
Q Consensus 73 ~ 73 (134)
.
T Consensus 88 ~ 88 (109)
T 1rwy_A 88 A 88 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 82
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=36.08 E-value=46 Score=23.01 Aligned_cols=29 Identities=17% Similarity=0.051 Sum_probs=24.1
Q ss_pred HhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 31 SCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 31 TSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
-..|...|+.-+...|+.+|+|-||-+-+
T Consensus 90 L~~A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 90 LELSLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 35677888889999999999999986544
No 83
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=36.00 E-value=79 Score=19.68 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=33.6
Q ss_pred HHHHHHHHHh---------HhhHHhHhcCCCccChhHHHHHHhhc---CCCcchHHHHHHHHHH
Q 032773 23 LPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMRY 74 (134)
Q Consensus 23 aseFI~ylTS---------eAnd~c~~ekRKTI~~dDVL~AL~eL---gF~dyv~~Lk~~L~~y 74 (134)
-.+|+.++.. .+-...-.++.-.|+.+++..+|..+ |..---+.++..+..+
T Consensus 27 ~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~ 90 (109)
T 3fs7_A 27 YKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAG 90 (109)
T ss_dssp HHHHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHHh
Confidence 3557766642 23334445677889999999999999 5554455555555443
No 84
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=35.45 E-value=59 Score=19.29 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 36 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 36 d~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
...-.++.-.|+.+++..+|..+|+.-=.+.+...+..
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 58 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKD 58 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34445677889999999999999876444455554443
No 85
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=35.38 E-value=66 Score=20.18 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 36 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 36 d~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
.....++..+|+.+++..+|..+|..-=-+.++..+.
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3345667788999999999999997644444554444
No 86
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=35.34 E-value=39 Score=23.45 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=25.1
Q ss_pred HHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 30 LSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 30 lTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
+-..|...|+.-+...|+.+|+|-||-+-+
T Consensus 89 vl~~A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 89 ILELSGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 336788888999999999999999997654
No 87
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=34.95 E-value=62 Score=19.27 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=27.6
Q ss_pred HhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 37 ~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
..-.++...|+.+++..+|..+|..--.+.+...+..+
T Consensus 31 ~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 68 (87)
T 1s6j_A 31 MIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAA 68 (87)
T ss_dssp HHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 33456778899999999999999865555555555443
No 88
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=34.25 E-value=78 Score=19.13 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=26.4
Q ss_pred HhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 37 ~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
..-.++...|+.+++..+|..+|+.-=-+.++..+..
T Consensus 28 ~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~ 64 (90)
T 1avs_A 28 MFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEE 64 (90)
T ss_dssp HHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3345677899999999999999986444455554443
No 89
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=34.09 E-value=20 Score=22.69 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=12.8
Q ss_pred hHHHHHHhhcCCCc
Q 032773 49 DDLLWAMATLGFED 62 (134)
Q Consensus 49 dDVL~AL~eLgF~d 62 (134)
+|++.||..|||..
T Consensus 18 ~ea~~AL~aLGY~~ 31 (62)
T 1ixs_A 18 EEAVMALAALGFKE 31 (62)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 68999999999985
No 90
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=33.77 E-value=96 Score=21.93 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=33.7
Q ss_pred hHHHHHHHHHh-----HhhHHhHhcCCCccChhHHHHHHhhc----CCCcchHHHHHHHH
Q 032773 22 SLPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATL----GFEDYIDPLKAYLM 72 (134)
Q Consensus 22 caseFI~ylTS-----eAnd~c~~ekRKTI~~dDVL~AL~eL----gF~dyv~~Lk~~L~ 72 (134)
.-.||+..++. .|-...- ++.-+|+.+++..+|..+ |+.-=-+.++..+.
T Consensus 64 ~f~EF~~~~~~~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~ 122 (174)
T 2i7a_A 64 DQEEFARLWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTL 122 (174)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHH
Confidence 44567665542 4555666 788899999999999999 87633334444443
No 91
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=33.76 E-value=93 Score=19.85 Aligned_cols=36 Identities=19% Similarity=0.033 Sum_probs=24.6
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
-.++.-.|+.+++..+|..+|..---+.+...+..+
T Consensus 89 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (142)
T 2bl0_C 89 DPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGIT 124 (142)
T ss_dssp CCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 446777899999999999998653344455444443
No 92
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=33.71 E-value=16 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=18.9
Q ss_pred CccChhHHHHHHhhcCC--CcchHHH
Q 032773 44 KTINGDDLLWAMATLGF--EDYIDPL 67 (134)
Q Consensus 44 KTI~~dDVL~AL~eLgF--~dyv~~L 67 (134)
..=+++||..-|+.+|| ++|++..
T Consensus 18 ~~Wt~~dV~~WL~~~gl~~~~Y~~~F 43 (91)
T 1v85_A 18 DKWTTEEVVLWLEQLGPWASLYRDRF 43 (91)
T ss_dssp GGCCHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34689999999999999 6666443
No 93
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=33.70 E-value=54 Score=19.01 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=22.9
Q ss_pred hHhcCCCccChhHHHHHHhhcCCCcchHHHHHHH
Q 032773 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 38 c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L 71 (134)
.-.++.-.|+.+++..+|..+|+.--.+.++..+
T Consensus 16 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 16 FDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp HCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred hCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3456677899999999999988753333444333
No 94
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=33.45 E-value=18 Score=21.38 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.9
Q ss_pred CccChhHHHHHHhhcCCC
Q 032773 44 KTINGDDLLWAMATLGFE 61 (134)
Q Consensus 44 KTI~~dDVL~AL~eLgF~ 61 (134)
..++.++|+.+++.+||+
T Consensus 49 ~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 49 NLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp TTCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHCCCc
Confidence 457899999999999996
No 95
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=32.87 E-value=1.1e+02 Score=20.23 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=26.4
Q ss_pred hHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 38 c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
.-.++.-+|+.+++..+|..+|..---+.+...+..+
T Consensus 110 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 146 (169)
T 3qrx_A 110 FDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEA 146 (169)
T ss_dssp HCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred hCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 3456788999999999999998654445555554443
No 96
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=32.37 E-value=34 Score=25.19 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=24.4
Q ss_pred hHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 32 CRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 32 SeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
..|.+.|..-+...|.++|+|.||=+-+
T Consensus 34 ~~A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 34 EQAASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HHHHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 5688999999999999999999986543
No 97
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=32.24 E-value=1e+02 Score=22.36 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=32.9
Q ss_pred HHHHHHHHHh-----HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 23 LPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 23 aseFI~ylTS-----eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
-.||+.++.. .+-...-.++.-+|+.+++..+|..+|..-=-+.++..+..
T Consensus 106 ~~EF~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~~ 161 (220)
T 3sjs_A 106 FYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRL 161 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3456665543 33344555788899999999999999875444444444443
No 98
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=32.11 E-value=22 Score=26.58 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.9
Q ss_pred ChhHHHHHHhhcCCCcchH
Q 032773 47 NGDDLLWAMATLGFEDYID 65 (134)
Q Consensus 47 ~~dDVL~AL~eLgF~dyv~ 65 (134)
+.+.||..|+++||.+|+.
T Consensus 108 ~~~~vle~Lk~~gl~~~Ir 126 (171)
T 2p2u_A 108 TKDMTLERLRQFGISEGIR 126 (171)
T ss_dssp CHHHHHHHHHHTTCCTTCC
T ss_pred CHHHHHHHHHHCCcHhhee
Confidence 5578999999999999985
No 99
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=31.78 E-value=80 Score=24.17 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=28.4
Q ss_pred HhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHH
Q 032773 31 SCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLK 68 (134)
Q Consensus 31 TSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk 68 (134)
-..|...|..+++.+|+.+||..|++++..+.+.+.++
T Consensus 247 l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~ 284 (389)
T 1fnn_A 247 LYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLI 284 (389)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHH
Confidence 34555666777889999999999999987766554443
No 100
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=31.78 E-value=70 Score=27.49 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 30 LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 30 lTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
+-..|..+|..+++..|+.+||.+|++.
T Consensus 347 llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 347 IVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3456778889999999999999999964
No 101
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=31.64 E-value=52 Score=24.21 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=26.2
Q ss_pred HHHHHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 27 I~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
|.-+-.+|.-.|..+++.+|+.+|+-.|+++.-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 444556777778888899999999999998763
No 102
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=31.06 E-value=89 Score=18.81 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=21.9
Q ss_pred hHhcCCCccChhHHHHHHhhcCCCcchHHHHHHH
Q 032773 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 38 c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L 71 (134)
.-.++.-.|+.+++..+|..+|..-=.+.+...+
T Consensus 18 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 51 (92)
T 2kn2_A 18 FDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 51 (92)
T ss_dssp HCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3445667788888888888888653333444433
No 103
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=30.59 E-value=55 Score=21.48 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=24.1
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
-.++.-+|+.+++..+|..+|..---+.+...+.
T Consensus 95 D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 128 (153)
T 2ovk_B 95 DEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWK 128 (153)
T ss_dssp CSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467788999999999999986544444444444
No 104
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=30.46 E-value=1.1e+02 Score=19.54 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=27.3
Q ss_pred HHhHhcCCCccChhHHHHHHhh-cCCCcchHHHHHHHHHH
Q 032773 36 DKCQKEKRKTINGDDLLWAMAT-LGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 36 d~c~~ekRKTI~~dDVL~AL~e-LgF~dyv~~Lk~~L~~y 74 (134)
...-.++...|+.+++..+|.. +|..---+.+...+..+
T Consensus 95 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 95 REFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 3344567789999999999999 78764445555555544
No 105
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=30.20 E-value=76 Score=20.32 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhH------------hhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 22 SLPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTSe------------And~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
.-.+|+.++... +-...-.++.-.|+.+++..+|..+|..---+.+...+..
T Consensus 57 ~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~ 120 (143)
T 3j04_B 57 NFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYRE 120 (143)
T ss_dssp CHHHHHHHHHHTTTSSCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345677776542 1222234577789999999999999876444455555443
No 106
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.91 E-value=43 Score=28.43 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=26.9
Q ss_pred HHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 26 FI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
=|.-|..+|.-.|.++++..|+.+|+..|++.
T Consensus 390 Di~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 390 DIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 35666778888888999999999999999875
No 107
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=29.90 E-value=31 Score=18.91 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=14.1
Q ss_pred cChhHHHHHHhhcCCC
Q 032773 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~eLgF~ 61 (134)
++.++|..+++.+||.
T Consensus 47 ~~~~~i~~~i~~~G~~ 62 (64)
T 2xmm_A 47 LGEEQLRTAIASAGYE 62 (64)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 5788999999999985
No 108
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=29.77 E-value=27 Score=24.00 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=19.3
Q ss_pred ccChhHHHHHHhhc--CCCcchHHH
Q 032773 45 TINGDDLLWAMATL--GFEDYIDPL 67 (134)
Q Consensus 45 TI~~dDVL~AL~eL--gF~dyv~~L 67 (134)
.=+++||..-|+.+ ||++|++..
T Consensus 25 ~Wt~~~V~~WL~~~~~gl~~Y~~~F 49 (106)
T 3bs5_A 25 LWTVSDVLKWYRRHCGEYTQYEQLF 49 (106)
T ss_dssp GCCHHHHHHHHHHHSGGGGGGHHHH
T ss_pred cCCHHHHHHHHHHHHcchHHHHHHH
Confidence 46899999999999 999988543
No 109
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=29.70 E-value=86 Score=18.63 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=22.9
Q ss_pred HhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 37 ~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
..-.++...|+.+++..+|..+| .--.+.+...+.
T Consensus 19 ~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~~ 53 (86)
T 2opo_A 19 RFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMMA 53 (86)
T ss_dssp HHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHHH
T ss_pred HHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 34456777899999999999888 433334444433
No 110
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=29.20 E-value=33 Score=19.34 Aligned_cols=23 Identities=0% Similarity=-0.088 Sum_probs=16.6
Q ss_pred hHhcCCCccChhHHHHHHhhcCC
Q 032773 38 CQKEKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 38 c~~ekRKTI~~dDVL~AL~eLgF 60 (134)
.-.++...|+.+++..+|..+|.
T Consensus 9 ~D~d~~G~i~~~e~~~~l~~~~~ 31 (66)
T 3li6_A 9 IDVNGDGAVSYEEVKAFVSKKRA 31 (66)
T ss_dssp HCTTCSSSCCHHHHHHHHHHHHH
T ss_pred HCCCCCCcccHHHHHHHHHHccC
Confidence 34456677888888888888764
No 111
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.17 E-value=45 Score=28.33 Aligned_cols=33 Identities=6% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 26 FI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
-|.-|..+|.-.|.+++++.|+.+|++.|++..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 456677788888889999999999999998764
No 112
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=29.16 E-value=85 Score=25.12 Aligned_cols=46 Identities=24% Similarity=0.106 Sum_probs=36.7
Q ss_pred Ccccccch------hHHHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhhcC
Q 032773 14 NVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 14 n~kISKda------caseFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLg 59 (134)
+.+++.+| ++--|+--+-..+|-.|.-.||-||.+.|+--|..--|
T Consensus 34 ~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 34 DLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 67888776 55566667778888888999999999999988865544
No 113
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=29.08 E-value=48 Score=30.97 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=27.1
Q ss_pred hhHHHHH----HHHHhHhh----HHhHhcCCCccChhHHHHHHhh
Q 032773 21 ASLPASF----SFLSCRAS----DKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 21 acaseFI----~ylTSeAn----d~c~~ekRKTI~~dDVL~AL~e 57 (134)
+.+.+|+ -|||++-- ..|+..+++.|++.||..|+..
T Consensus 124 ~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 124 HQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 3556664 58888754 5556678889999999988854
No 114
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=29.05 E-value=1.3e+02 Score=20.22 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=33.7
Q ss_pred hHHHHHHHHHh-----HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 22 SLPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTS-----eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
.-.||+.++.. .+-...-.++..+|+.+++..+|..+|..--.+.++..+..
T Consensus 65 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 121 (173)
T 1alv_A 65 GFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRR 121 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44567666543 23344455677899999999999999876434444444443
No 115
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=29.01 E-value=47 Score=22.71 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=23.2
Q ss_pred HhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 31 SCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 31 TSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
-..|...+..-+...|+++|+|.||-+-
T Consensus 88 L~~A~~~A~~~~~~~i~~ehlLlall~~ 115 (150)
T 2y1q_A 88 IELSMDEARKLGHSYVGTEHILLGLIRE 115 (150)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeecHHHHHHHHHhC
Confidence 3567788888899999999999998643
No 116
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.98 E-value=46 Score=28.65 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=27.1
Q ss_pred HHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 26 FI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
=|.-|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 391 DI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45667788888899999999999999999874
No 117
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=28.83 E-value=1.3e+02 Score=19.91 Aligned_cols=33 Identities=15% Similarity=0.020 Sum_probs=22.5
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L 71 (134)
-.++.-.|+.+++..+|..+|..--.+.+...+
T Consensus 105 D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~ 137 (166)
T 2mys_B 105 DPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMW 137 (166)
T ss_pred CCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 446777899999999999888653333444444
No 118
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=28.82 E-value=36 Score=24.12 Aligned_cols=29 Identities=10% Similarity=-0.019 Sum_probs=26.3
Q ss_pred cChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 46 INGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 46 I~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
-+.+.++.||..+|..+.++.|+..|.+-
T Consensus 64 ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 64 ATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999988864
No 119
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=28.68 E-value=1.3e+02 Score=19.76 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.7
Q ss_pred hHHHHHHHHHh--------------HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 22 SLPASFSFLSC--------------RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 22 caseFI~ylTS--------------eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
.-.+|+.++.. .|-...-.++.-+|+.+++..+|..+|..-=-+.+...+.
T Consensus 64 ~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 64 KLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp EHHHHHHHHHHHTTCSTTCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhccCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 44677777632 2334445567889999999999999986544444555444
No 120
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=28.62 E-value=77 Score=19.54 Aligned_cols=28 Identities=7% Similarity=0.203 Sum_probs=22.0
Q ss_pred hhHHhHhcCCCccChhHHHHHHhhcCCC
Q 032773 34 ASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 34 And~c~~ekRKTI~~dDVL~AL~eLgF~ 61 (134)
+-.....++.-.|+.+++..+|..+|+.
T Consensus 32 ~F~~~D~d~~G~I~~~El~~~l~~~g~~ 59 (91)
T 2pmy_A 32 VFAACDANRSGRLEREEFRALCTELRVR 59 (91)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCCCCCcHHHHHHHHHHcCcC
Confidence 3344556778899999999999999954
No 121
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=28.45 E-value=1.3e+02 Score=19.93 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=34.8
Q ss_pred hHHHHHHHHHh-----HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 22 SLPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 22 caseFI~ylTS-----eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
.-.||+.++.. .+-...-.++.-+|+.+++..+|..+|..--.+.++..+..+
T Consensus 58 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 115 (165)
T 1k94_A 58 GFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY 115 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 44556665433 233344556778999999999999999764455555555554
No 122
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=28.38 E-value=1.3e+02 Score=19.69 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=24.6
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
-.++.-.|+.+++..+|..+|..---+.+...+.
T Consensus 89 D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 122 (143)
T 2obh_A 89 DDDETGKISFKNLKRVAKELGENLTDEELQEMID 122 (143)
T ss_dssp CTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4467778999999999999986533445555554
No 123
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=28.22 E-value=64 Score=19.31 Aligned_cols=30 Identities=10% Similarity=0.018 Sum_probs=22.6
Q ss_pred HhHhcCCCccChhHHHHHHhhcCCCcchHH
Q 032773 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDP 66 (134)
Q Consensus 37 ~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~ 66 (134)
..-.++..+|+.+++..+|..+|+.-=.+.
T Consensus 22 ~~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 51 (86)
T 1j7q_A 22 IFDRNAENIAPVSDTMDMLTKLGQTYTKRE 51 (86)
T ss_dssp HHSTTTTSCBCHHHHHHHHHHTSCCCSHHH
T ss_pred HhCCCCCCcCcHHHHHHHHHHHcCCCCHHH
Confidence 334567788999999999999997643334
No 124
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=28.11 E-value=1.2e+02 Score=20.34 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=24.0
Q ss_pred hHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHH
Q 032773 35 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAY 70 (134)
Q Consensus 35 nd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~ 70 (134)
-...-.++.-.|+.+++..+|..+|..--.+.+...
T Consensus 115 F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~~~~ 150 (191)
T 1uhk_A 115 FDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEET 150 (191)
T ss_dssp HHHHCTTCSSEECHHHHHHHHHHHTSCCSHHHHHHH
T ss_pred HHHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 334445677889999999999998864333333333
No 125
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=27.76 E-value=1.1e+02 Score=18.89 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=23.8
Q ss_pred HhHhcCCCccChhHHHHHHhhcC---CCcchHHHHHHHH
Q 032773 37 KCQKEKRKTINGDDLLWAMATLG---FEDYIDPLKAYLM 72 (134)
Q Consensus 37 ~c~~ekRKTI~~dDVL~AL~eLg---F~dyv~~Lk~~L~ 72 (134)
..-.++.-+|+.+++..+|..+| ..---+.++..+.
T Consensus 49 ~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 87 (108)
T 1rro_A 49 FIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMD 87 (108)
T ss_dssp HHCTTCSSEECTHHHHTGGGGTCTTSCCCCHHHHHHHHH
T ss_pred HhCCCCCCcCCHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 33456777899999999999994 4333344444443
No 126
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.76 E-value=47 Score=28.82 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 26 FI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
-|.-|-.+|.-.|.+++|+.|+-+|+++|++..
T Consensus 418 DI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 418 ELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 355667788888889999999999999998764
No 127
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=27.74 E-value=47 Score=22.51 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 30 LSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 30 lTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
+-..|...++.-+...|+++|+|.||-+-
T Consensus 87 ~l~~A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 87 VLQRAVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp HHHHHHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 34677888888899999999999999653
No 128
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=27.12 E-value=41 Score=21.29 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.6
Q ss_pred cChhHHHHHHhhc--CCCcchHHHH
Q 032773 46 INGDDLLWAMATL--GFEDYIDPLK 68 (134)
Q Consensus 46 I~~dDVL~AL~eL--gF~dyv~~Lk 68 (134)
=+++||..-|+.+ |++.|++...
T Consensus 7 Ws~~~V~~WL~~l~~gl~~Y~~~F~ 31 (80)
T 3bs5_B 7 WSPSQVVDWMKGLDDCLQQYIKNFE 31 (80)
T ss_dssp CCHHHHHHHHHTSCGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3689999999988 4777776543
No 129
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=27.09 E-value=1.1e+02 Score=20.31 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=29.1
Q ss_pred hHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 35 SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 35 nd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
-...-.++.-+|+.+++-.+|..+|..---+.+...+..
T Consensus 89 F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 89 FKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 334456788899999999999999987666666665544
No 130
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=27.01 E-value=68 Score=18.15 Aligned_cols=33 Identities=30% Similarity=0.298 Sum_probs=22.7
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L 71 (134)
-.++...|+.+++..+|..+|..-=.+.+...+
T Consensus 16 D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 48 (71)
T 2b1u_A 16 DQDGDGHITVDELRRAMAGLGQPLPQEELDAMI 48 (71)
T ss_dssp CCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 445677899999999999998653333444333
No 131
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.94 E-value=58 Score=27.56 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 24 PASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 24 seFI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
.-=|.-|-.+|.-.|.+++|..|+-+|+..|++.
T Consensus 355 GADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 355 GADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 3345667788888899999999999999999864
No 132
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=26.73 E-value=33 Score=21.33 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=15.4
Q ss_pred ccChhHHHHHHhhcCCCc
Q 032773 45 TINGDDLLWAMATLGFED 62 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~d 62 (134)
.++..||+.+|+..||..
T Consensus 4 p~~~~elik~L~~~G~~~ 21 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVE 21 (70)
T ss_dssp CCCHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHCCCEE
Confidence 367899999999999963
No 133
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=26.34 E-value=62 Score=24.13 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=31.7
Q ss_pred hHHHHHHHHHhHhhHH--hHhcC----CCccChhHHHHHHhhc-----CCCcchHHHHHHHHHHHH
Q 032773 22 SLPASFSFLSCRASDK--CQKEK----RKTINGDDLLWAMATL-----GFEDYIDPLKAYLMRYRE 76 (134)
Q Consensus 22 caseFI~ylTSeAnd~--c~~ek----RKTI~~dDVL~AL~eL-----gF~dyv~~Lk~~L~~yre 76 (134)
.+.+||.|+++..... ++..+ ++.+..+..+..+.++ +++.+.+...+.+++|.+
T Consensus 253 ~A~~fi~fl~s~e~q~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 318 (323)
T 1y9u_A 253 NAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAEIAKYRKQASELVDK 318 (323)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHTTCEESSTTCCCCHHHHHTCCCCBCCSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhccccccCCCCCCCCccCCCccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999999865433 22222 4556656666666544 233344445555555554
No 134
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=26.22 E-value=1e+02 Score=20.08 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=9.9
Q ss_pred cCCCccChhHHHHHHhhcCC
Q 032773 41 EKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 41 ekRKTI~~dDVL~AL~eLgF 60 (134)
++..+|+.+++..+|..+|+
T Consensus 22 d~~G~i~~~el~~~l~~~g~ 41 (148)
T 1exr_A 22 DGDGTITTKELGTVMRSLGQ 41 (148)
T ss_dssp TCSSEECHHHHHHHHHHHTC
T ss_pred CCCCcCcHHHHHHHHHHcCC
Confidence 34445555555555555444
No 135
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=25.83 E-value=39 Score=19.00 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.5
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.++.++|..+++.+||.
T Consensus 51 ~~~~~~i~~~i~~~G~~ 67 (72)
T 1osd_A 51 KTSVQKLTKATADAGYP 67 (72)
T ss_dssp TCCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHhcCCC
Confidence 35778899999999996
No 136
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.81 E-value=65 Score=26.78 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=27.5
Q ss_pred hHhhHHhHhcCCCccChhHHHHHHhhcCCCcchH
Q 032773 32 CRASDKCQKEKRKTINGDDLLWAMATLGFEDYID 65 (134)
Q Consensus 32 SeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~ 65 (134)
..|.+.|..-+...|.++|+|.||=+-+=+....
T Consensus 15 ~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~ 48 (468)
T 3pxg_A 15 ALAQEEALRLGHNNIGTEHILLGLVREGEGIAAK 48 (468)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHH
Confidence 5688999999999999999999997765443333
No 137
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=25.67 E-value=1.1e+02 Score=20.64 Aligned_cols=35 Identities=20% Similarity=0.064 Sum_probs=20.8
Q ss_pred HHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHH
Q 032773 36 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAY 70 (134)
Q Consensus 36 d~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~ 70 (134)
...-.++.-.|+.+++..+|..+|..--.+.+...
T Consensus 120 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 154 (195)
T 1qv0_A 120 DIFDKDGSGTITLDEWKAYGKISGISPSQEDCEAT 154 (195)
T ss_dssp HHTC----CEECHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred HHhcCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 33445677889999999999999864323333333
No 138
>1o7b_T Tumor necrosis factor-inducible protein TSG-6; hyaluronan-binding domain, carbohydrate-binding domain, LINK module, cell adhesion, glycoprotein; NMR {Homo sapiens} SCOP: d.169.1.4 PDB: 1o7c_T 2pf5_A*
Probab=25.51 E-value=53 Score=22.64 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=26.7
Q ss_pred hHhhHHhHhcCCCccChhHHHHHHhhcCCC
Q 032773 32 CRASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 32 SeAnd~c~~ekRKTI~~dDVL~AL~eLgF~ 61 (134)
.+|.+.|+..+-.--+.++|-.|.+ .||+
T Consensus 17 ~eA~~aC~~~ga~LAs~~QL~~A~~-~G~~ 45 (98)
T 1o7b_T 17 AEAKAVCEFEGGHLATYKQLEAARK-IGFH 45 (98)
T ss_dssp HHHHHHHHHSSCEECCHHHHHHHHT-TTCC
T ss_pred HHHHHHHHhcCCccCCHHHHHHHHH-cCcc
Confidence 6899999999999999999999988 8997
No 139
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=25.26 E-value=37 Score=19.95 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=14.6
Q ss_pred cChhHHHHHHhhcCCC
Q 032773 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~eLgF~ 61 (134)
++.++|+.+++++||+
T Consensus 51 ~~~~~i~~~i~~~Gy~ 66 (73)
T 1cc8_A 51 LPYDFILEKIKKTGKE 66 (73)
T ss_dssp SCHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHhCCC
Confidence 6789999999999996
No 140
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=25.08 E-value=39 Score=18.67 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=14.5
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.++.+++..+++.+||+
T Consensus 48 ~~~~~~i~~~i~~~G~~ 64 (68)
T 1cpz_A 48 NVQATEICQAINELGYQ 64 (68)
T ss_dssp TCCHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 36778999999999996
No 141
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=25.08 E-value=34 Score=19.37 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.8
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.++.++|..+++.+||+
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (66)
T 2roe_A 45 TADPKALVQAVEEEGYK 61 (66)
T ss_dssp CCCHHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 36889999999999985
No 142
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=24.98 E-value=71 Score=18.78 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=23.9
Q ss_pred HhcCCCccChhHHHHHHhhcC-CCcchHHHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLG-FEDYIDPLKAYLMR 73 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLg-F~dyv~~Lk~~L~~ 73 (134)
-.++...|+.+++..+|..+| +.--.+.++..+..
T Consensus 18 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 53 (81)
T 1c7v_A 18 DANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKE 53 (81)
T ss_dssp SCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 345667899999999999998 65444455544443
No 143
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=24.96 E-value=1.3e+02 Score=18.62 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=23.4
Q ss_pred HhHhcCCCccChhHHHHHHhhcCCCcchHHHHH
Q 032773 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKA 69 (134)
Q Consensus 37 ~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~ 69 (134)
..-.++...|+.+++..+|..+|+.-=.+.++.
T Consensus 32 ~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~ 64 (105)
T 1wlz_A 32 NFDTMKTNTISREEFRAICNRRVQILTDEQFDR 64 (105)
T ss_dssp HHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 344567788999999999999987633333433
No 144
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.93 E-value=68 Score=18.09 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=16.2
Q ss_pred hhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 48 GDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 48 ~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
.++.+.-|.++||+. +.....|..
T Consensus 4 ~e~~i~~L~~MGF~~--~~a~~AL~~ 27 (43)
T 2g3q_A 4 KSLAVEELSGMGFTE--EEAHNALEK 27 (43)
T ss_dssp HHHHHHHHHTTTSCH--HHHHHHHHH
T ss_pred CHHHHHHHHHcCCCH--HHHHHHHHH
Confidence 456788899999985 444445544
No 145
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=24.60 E-value=37 Score=19.14 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=14.1
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.++.++|..+++.+||+
T Consensus 53 ~~~~~~i~~~i~~~G~~ 69 (71)
T 2l3m_A 53 VVTLKDIVAVIEDQGYD 69 (71)
T ss_dssp TSCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 35678899999999985
No 146
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=24.49 E-value=1.3e+02 Score=19.54 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=22.7
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
-.++.-+|+.+++..+|..+|..---+.+...+.
T Consensus 97 D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 130 (156)
T 1wdc_B 97 DEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFK 130 (156)
T ss_dssp CTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred CcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3466778999999999998886533334444433
No 147
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=24.49 E-value=31 Score=28.43 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=25.1
Q ss_pred hhHHHHHHhhcCCCcchHHHHHHHHHHH
Q 032773 48 GDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 48 ~dDVL~AL~eLgF~dyv~~Lk~~L~~yr 75 (134)
=|.-+.-|+.+|.++|++..+..+++|+
T Consensus 507 wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 507 WDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 4677888999999999999999999996
No 148
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=24.31 E-value=1.6e+02 Score=19.57 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=33.8
Q ss_pred hHHHHHHHHHh-----HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 22 SLPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 22 caseFI~ylTS-----eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
.-.||+.++.. .+-...-.++.-+|+.+++..+|..+|..---+.++..+..+
T Consensus 60 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 117 (167)
T 1gjy_A 60 GFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY 117 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 44566665433 223344456778999999999999998764444555554443
No 149
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=24.14 E-value=1.8e+02 Score=20.06 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=30.2
Q ss_pred HHHHHHHHHh-----HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHH
Q 032773 23 LPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 23 aseFI~ylTS-----eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L 71 (134)
-.||+.++.. .+-...-.++.-+|+.+++..+|..+|+.-=-+.+...+
T Consensus 82 ~~EF~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~ 135 (191)
T 1y1x_A 82 FDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALM 135 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3456655432 233444556778899999999999988653333333333
No 150
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=24.06 E-value=1.6e+02 Score=19.57 Aligned_cols=51 Identities=8% Similarity=0.098 Sum_probs=32.2
Q ss_pred hHHHHHHHHHh-----HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 22 SLPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 22 caseFI~ylTS-----eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
.-.+|+.++.. .+-...-.++.-.|+.+++..+|..+|..--.+.+...+.
T Consensus 62 ~~~ef~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 117 (172)
T 2znd_A 62 NFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIR 117 (172)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34556665432 2333444567788999999999999987544444444443
No 151
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=23.86 E-value=1.2e+02 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhH------------hhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 22 SLPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 22 caseFI~ylTSe------------And~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
.-.||+.++... +-...-.++.-+|+.+++..+|+.+|+.---+.++..+..|
T Consensus 366 sfeEFl~ll~~~~~~~~~~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 366 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp EHHHHHHHHHC------CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccccchhhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 445677766432 34445567888999999999999999875556666666554
No 152
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.83 E-value=47 Score=21.23 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=18.1
Q ss_pred cChhHHHHHHhhc--CCCcchHHHH
Q 032773 46 INGDDLLWAMATL--GFEDYIDPLK 68 (134)
Q Consensus 46 I~~dDVL~AL~eL--gF~dyv~~Lk 68 (134)
=+++||..-|+.+ |+++|++...
T Consensus 11 Wt~~~V~~WL~~l~~gl~~Y~~~F~ 35 (83)
T 2ean_A 11 WSPSQVVDWMKGLDDCLQQYIKNFE 35 (83)
T ss_dssp CCTTHHHHHHTTSCGGGTTTHHHHH
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4789999999998 4888886543
No 153
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=23.80 E-value=97 Score=18.00 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=14.1
Q ss_pred HhcCCCccChhHHHHHHhhcC
Q 032773 39 QKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLg 59 (134)
-.++...|+.+++..+|..+|
T Consensus 13 D~~~~G~i~~~el~~~l~~~g 33 (78)
T 1k9u_A 13 DTNGDGKISLSELTDALRTLG 33 (78)
T ss_dssp CTTCSSEECHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHhC
Confidence 345556677777777777776
No 154
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=23.72 E-value=33 Score=19.22 Aligned_cols=16 Identities=19% Similarity=0.161 Sum_probs=13.4
Q ss_pred cChhHHHHHHhhcCCC
Q 032773 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~eLgF~ 61 (134)
++.++|..+++.+||.
T Consensus 51 ~~~~~i~~~i~~~G~~ 66 (71)
T 2xmw_A 51 TTPQILTDAVERAGYH 66 (71)
T ss_dssp -CHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHcCCC
Confidence 6788999999999985
No 155
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=23.58 E-value=91 Score=20.14 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=22.1
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAY 70 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~ 70 (134)
-.++.-.|+.+++..+|..+|..--.+.+...
T Consensus 97 D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~ 128 (151)
T 1w7j_B 97 DKEGNGKVMGAELRHVLTTLGEKMTEEEVETV 128 (151)
T ss_dssp CTTSSSEEEHHHHHHHHHHSSSCCCHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34667789999999999999865333334333
No 156
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=23.38 E-value=1.5e+02 Score=18.99 Aligned_cols=32 Identities=16% Similarity=0.115 Sum_probs=21.3
Q ss_pred HhcC-CCccChhHHHHHHhhcCCCcchHHHHHH
Q 032773 39 QKEK-RKTINGDDLLWAMATLGFEDYIDPLKAY 70 (134)
Q Consensus 39 ~~ek-RKTI~~dDVL~AL~eLgF~dyv~~Lk~~ 70 (134)
-.++ -.+|+.+++..+|..+|+.---+.+...
T Consensus 24 D~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~l 56 (146)
T 2qac_A 24 NEKSSGGKISIDNASYNARKLGLAPSSIDEKKI 56 (146)
T ss_dssp HHHCBTTBEEHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CccCCCCcccHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445 6688888888888888876443444433
No 157
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=22.71 E-value=43 Score=18.17 Aligned_cols=17 Identities=18% Similarity=0.396 Sum_probs=14.0
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.++.+++..+++.+||.
T Consensus 50 ~~~~~~i~~~i~~~G~~ 66 (69)
T 2qif_A 50 KVSVKDIADAIEDQGYD 66 (69)
T ss_dssp TCCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 35678899999999985
No 158
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=22.65 E-value=1.5e+02 Score=19.06 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=20.3
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L 71 (134)
-.++...|+.+++..+|..+|+.--.+.++..+
T Consensus 33 D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 33 DMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp CTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 345666788888877777777654333343333
No 159
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=22.63 E-value=49 Score=18.97 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.5
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.++.++|..+++.+||.
T Consensus 50 ~~~~~~i~~~i~~~Gy~ 66 (75)
T 3cjk_B 50 LQTPKTLQEAIDDMGFD 66 (75)
T ss_dssp TCCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHcCCc
Confidence 35778999999999996
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.61 E-value=70 Score=23.47 Aligned_cols=30 Identities=27% Similarity=0.179 Sum_probs=22.7
Q ss_pred HHHHHhHhhHHhHhcCCCccChhHHHHHHh
Q 032773 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 27 I~ylTSeAnd~c~~ekRKTI~~dDVL~AL~ 56 (134)
|.-+-.+|...|..+++.+|+.+|+.+|++
T Consensus 225 l~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 225 LENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 444445677777788888999999988863
No 161
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=22.52 E-value=30 Score=25.17 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=11.9
Q ss_pred HHhHhhHHhHhcCCCccChhHHHHHHhhc
Q 032773 30 LSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 30 lTSeAnd~c~~ekRKTI~~dDVL~AL~eL 58 (134)
+..+|...|..+++.+|+.+|+..|+++.
T Consensus 221 l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 221 ICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 33444455555566667777766665543
No 162
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=22.52 E-value=43 Score=25.43 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=27.8
Q ss_pred HHhHhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHH
Q 032773 30 LSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL 67 (134)
Q Consensus 30 lTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~L 67 (134)
+-..|...+..+++.+|+.+||-.|++++..+.+.+.+
T Consensus 244 ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~ 281 (386)
T 2qby_A 244 LLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDII 281 (386)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHH
Confidence 44566667777788999999999999988654444333
No 163
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=22.26 E-value=37 Score=19.10 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=14.0
Q ss_pred cChhHHHHHHhhcCCC
Q 032773 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~eLgF~ 61 (134)
++.++|..+++.+||.
T Consensus 52 ~~~~~i~~~i~~~G~~ 67 (72)
T 1aw0_A 52 TSPETLRGAIEDMGFD 67 (72)
T ss_dssp CCHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHCCCC
Confidence 5678899999999996
No 164
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=22.18 E-value=1.4e+02 Score=18.91 Aligned_cols=34 Identities=12% Similarity=-0.015 Sum_probs=18.4
Q ss_pred cCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 41 EKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 41 ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
++-.+|+.+++..+|..+|+.--.+.+...+..|
T Consensus 20 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 53 (149)
T 2mys_C 20 TGDAKITASQVGDIARALGQNPTNAEINKILGNP 53 (149)
T ss_pred CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3455666666666666666654444444444333
No 165
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=21.88 E-value=1.2e+02 Score=19.16 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=27.5
Q ss_pred HhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 37 ~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
..-.++..+|+.+++..+|..+|+.-=.+.+...+..+
T Consensus 40 ~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~ 77 (107)
T 2d58_A 40 EFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEV 77 (107)
T ss_dssp TSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 34456778999999999999999764445555555443
No 166
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=21.46 E-value=44 Score=18.72 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.1
Q ss_pred cChhHHHHHHhhcCCC
Q 032773 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~eLgF~ 61 (134)
++.++|+.+++.+||.
T Consensus 48 ~~~~~i~~~i~~~Gy~ 63 (69)
T 2kt2_A 48 TSPDALTAAVAGLGYK 63 (69)
T ss_dssp SCHHHHHHHHHTTTSE
T ss_pred CCHHHHHHHHHHCCCc
Confidence 4778999999999996
No 167
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=21.38 E-value=59 Score=24.76 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=25.3
Q ss_pred HHHhHhhHHhHhcCCCccChhHHHHHHhhcCCC
Q 032773 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 29 ylTSeAnd~c~~ekRKTI~~dDVL~AL~eLgF~ 61 (134)
-+-..|...|..+++.+|+.+||-.|++++..+
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 344556667777788999999999999887443
No 168
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=20.88 E-value=44 Score=26.49 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=21.5
Q ss_pred hHHHHHHhhcCCCcchHHHHHHHHHH
Q 032773 49 DDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 49 dDVL~AL~eLgF~dyv~~Lk~~L~~y 74 (134)
|+.++-|+.+|.+++++..++.+++|
T Consensus 464 d~~v~~l~~~G~d~~~~~~q~~ydr~ 489 (490)
T 3a09_A 464 NDYQQQLKNRGFYQVMIVMQKAYDRQ 489 (490)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHhccc
Confidence 45677888889999998888888876
No 169
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=20.78 E-value=48 Score=18.59 Aligned_cols=17 Identities=18% Similarity=0.435 Sum_probs=14.6
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.++.++|..+++.+||.
T Consensus 49 ~~~~~~i~~~i~~~G~~ 65 (72)
T 1fvq_A 49 EVTADSIKEIIEDCGFD 65 (72)
T ss_dssp TSCHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHCCCc
Confidence 46778999999999996
No 170
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=20.70 E-value=2e+02 Score=19.85 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhH-----hhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHHH
Q 032773 22 SLPASFSFLSCR-----ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTSe-----And~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~~ 73 (134)
.-.||+.++... +-...-.++.-+|+.+++..+|..+|..---+.++..+..
T Consensus 91 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~ 147 (198)
T 1juo_A 91 GFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKR 147 (198)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 345666655432 2333445677789999999999999875334444444443
No 171
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.66 E-value=44 Score=19.81 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=13.8
Q ss_pred ChhHHHHHHhhcCCC
Q 032773 47 NGDDLLWAMATLGFE 61 (134)
Q Consensus 47 ~~dDVL~AL~eLgF~ 61 (134)
+.++|..+++++||+
T Consensus 50 ~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 50 DVDKYIKAVEAAGYQ 64 (73)
T ss_dssp GHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHcCCc
Confidence 788999999999996
No 172
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=20.51 E-value=1.1e+02 Score=21.37 Aligned_cols=49 Identities=12% Similarity=-0.025 Sum_probs=29.8
Q ss_pred hHHHHHHHHHh------------HhhHHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHH
Q 032773 22 SLPASFSFLSC------------RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 22 caseFI~ylTS------------eAnd~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L 71 (134)
.-.+|+.++.. .+-...-.++.-+|+.+++..+| .+|..---+.+...+
T Consensus 107 ~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l~ 167 (196)
T 3dtp_E 107 NFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQAL 167 (196)
T ss_dssp BHHHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHHH
Confidence 34567776653 12233344677889999999999 888653334444433
No 173
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=20.18 E-value=1.3e+02 Score=20.28 Aligned_cols=40 Identities=18% Similarity=0.071 Sum_probs=28.8
Q ss_pred CCCccChh-------HHHHHHhhcCCC-cchHHHHHHHHHHHHHhccc
Q 032773 42 KRKTINGD-------DLLWAMATLGFE-DYIDPLKAYLMRYREMEGDT 81 (134)
Q Consensus 42 kRKTI~~d-------DVL~AL~eLgF~-dyv~~Lk~~L~~yre~~~~K 81 (134)
..-.|+.+ +..+||+++|++ +..+.+..+++..+..-..+
T Consensus 76 ~~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~~~a~~m~~~ 123 (128)
T 2bkm_A 76 LRFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMVNT 123 (128)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 34458877 678899999986 57777888887777654333
No 174
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.14 E-value=94 Score=26.21 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=26.8
Q ss_pred HHHHHHhHhhHHhHhcCCCccChhHHHHHHhh
Q 032773 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 26 FI~ylTSeAnd~c~~ekRKTI~~dDVL~AL~e 57 (134)
-|.-|..+|.-.|.+++|..|+.+|+..|+..
T Consensus 382 di~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 35667778888888999999999999999864
No 175
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=20.10 E-value=50 Score=19.18 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.5
Q ss_pred ccChhHHHHHHhhcCCC
Q 032773 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~eLgF~ 61 (134)
.++.++|..+++.+||.
T Consensus 56 ~~~~~~i~~~i~~~Gy~ 72 (79)
T 1kvi_A 56 LQTPKTLQEAIDDMGFD 72 (79)
T ss_dssp TCCHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHCCCc
Confidence 35678999999999996
No 176
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=20.09 E-value=1.8e+02 Score=18.86 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhHhh-------------HHhHhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 22 SLPASFSFLSCRAS-------------DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 22 caseFI~ylTSeAn-------------d~c~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
.-.+|+.++..... ...-.++.-+|+.+++..+|..+|..-=.+.+...+.
T Consensus 64 ~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 127 (156)
T 1wdc_C 64 PFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127 (156)
T ss_dssp CHHHHHHHHHHHTTSCCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred eHHHHHHHHHHHhhccCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44567776654422 2223456778999999999999986533344444444
No 177
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=20.06 E-value=1.3e+02 Score=20.43 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=23.5
Q ss_pred HhcCCCccChhHHHHHHhhcCCCcchHHHHHHHH
Q 032773 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 39 ~~ekRKTI~~dDVL~AL~eLgF~dyv~~Lk~~L~ 72 (134)
-.++..+|+.+++..+|..+|+.---+.++..+.
T Consensus 60 D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~ 93 (150)
T 2jjz_A 60 DLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMIS 93 (150)
T ss_dssp CCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4456778999999999999887643444444443
Done!