Query 032775
Match_columns 134
No_of_seqs 156 out of 1329
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ner_A Cytochrome B5 type B; h 100.0 1.1E-30 3.8E-35 175.6 7.5 83 3-85 7-89 (92)
2 1cyo_A Cytochrome B5; electron 100.0 1.1E-30 3.8E-35 175.9 7.4 84 2-85 1-84 (93)
3 3lf5_A Cytochrome B5 reductase 100.0 5.4E-31 1.9E-35 175.8 5.1 83 1-83 1-83 (88)
4 1hko_A Cytochrome B5; electron 100.0 4.1E-30 1.4E-34 176.4 8.6 86 2-87 5-90 (104)
5 2ibj_A Cytochrome B5, CYTB5; F 100.0 1.6E-30 5.6E-35 173.3 6.3 84 1-84 1-85 (88)
6 1cxy_A Cytochrome B5; helix, b 100.0 4.1E-29 1.4E-33 167.2 5.2 79 4-82 6-88 (90)
7 1mj4_A Sulfite oxidase; cytoch 99.9 1.2E-28 4.1E-33 162.4 5.4 78 2-80 1-82 (82)
8 1x3x_A Cytochrome B5; hemoprot 99.9 1E-28 3.5E-33 162.7 3.7 77 4-81 2-82 (82)
9 2keo_A Probable E3 ubiquitin-p 99.9 4.2E-30 1.4E-34 178.4 -3.9 84 1-84 19-102 (112)
10 1sox_A Sulfite oxidase; oxidor 99.9 1.1E-22 3.8E-27 170.0 10.3 81 3-84 2-86 (466)
11 1kbi_A Cytochrome B2, L-LCR; f 99.9 2.3E-22 7.9E-27 169.6 7.3 82 4-86 7-90 (511)
12 1j03_A Putative steroid bindin 99.7 8.8E-19 3E-23 119.5 2.8 61 5-67 2-66 (102)
13 1q90_G Cytochrome B6F complex 30.0 49 0.0017 17.7 2.6 17 115-131 13-30 (37)
14 1ho8_A Vacuolar ATP synthase s 29.3 3.8 0.00013 34.1 -2.9 34 31-66 427-460 (480)
15 1vf5_G Protein PET G; photosyn 26.1 44 0.0015 17.9 2.0 17 115-131 13-30 (37)
No 1
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=99.97 E-value=1.1e-30 Score=175.63 Aligned_cols=83 Identities=53% Similarity=1.008 Sum_probs=78.8
Q ss_pred CCCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeCC
Q 032775 3 SDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDIDP 82 (134)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~~ 82 (134)
++++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.++||.+|+++|++|+||+|.+
T Consensus 7 ~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~~a~~~L~~~~IG~l~~ 86 (92)
T 3ner_A 7 TSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHP 86 (92)
T ss_dssp CCSCEECHHHHTTCEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCHHHHHHHGGGEEEEECG
T ss_pred CCCCeeCHHHHHhhCCCCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCHHHHHHHHhCeeEEECh
Confidence 46899999999999999999999999999999999999999999999999999999998889999999999999999987
Q ss_pred CCC
Q 032775 83 STV 85 (134)
Q Consensus 83 ~~~ 85 (134)
++.
T Consensus 87 ~~~ 89 (92)
T 3ner_A 87 SDL 89 (92)
T ss_dssp GGS
T ss_pred Hhc
Confidence 653
No 2
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=99.97 E-value=1.1e-30 Score=175.92 Aligned_cols=84 Identities=45% Similarity=0.857 Sum_probs=78.9
Q ss_pred CCCCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeC
Q 032775 2 ASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDID 81 (134)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~ 81 (134)
|.+++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.++||.+|+++|++|+||+|.
T Consensus 1 s~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~l~ 80 (93)
T 1cyo_A 1 SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH 80 (93)
T ss_dssp CCSCCEECHHHHTTCEETTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCCHHHHHHHTTTEEEEEC
T ss_pred CCCCCccCHHHHHhhCCCCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHhCeeEEec
Confidence 34678999999999999999999999999999999999999999999999999999999988999999999999999997
Q ss_pred CCCC
Q 032775 82 PSTV 85 (134)
Q Consensus 82 ~~~~ 85 (134)
..+.
T Consensus 81 ~~~~ 84 (93)
T 1cyo_A 81 PDDR 84 (93)
T ss_dssp GGGG
T ss_pred Cccc
Confidence 6543
No 3
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=99.96 E-value=5.4e-31 Score=175.83 Aligned_cols=83 Identities=35% Similarity=0.626 Sum_probs=78.8
Q ss_pred CCCCCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEe
Q 032775 1 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 80 (134)
Q Consensus 1 m~~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l 80 (134)
|..+++.||++||++|++.++|||+|+|+|||||+|++.||||.++|+.++|+|+|+.|+.+||+.+++++|++|+||++
T Consensus 1 ~~~~l~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~~~~~~~~L~~~~IG~l 80 (88)
T 3lf5_A 1 MKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRM 80 (88)
T ss_dssp -CCSSEEECHHHHHHCEETTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHTTCCHHHHTGGGEEEEE
T ss_pred CCCCCCEeCHHHHHhhCCCCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHHHHCCcHHHHHHHHcCeeEEe
Confidence 77889999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred CCC
Q 032775 81 DPS 83 (134)
Q Consensus 81 ~~~ 83 (134)
..+
T Consensus 81 ~~~ 83 (88)
T 3lf5_A 81 AIK 83 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 4
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=99.96 E-value=4.1e-30 Score=176.39 Aligned_cols=86 Identities=44% Similarity=0.849 Sum_probs=80.4
Q ss_pred CCCCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEeC
Q 032775 2 ASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDID 81 (134)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l~ 81 (134)
.+.++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|+.++||.+|+++|++|+||+|.
T Consensus 5 ~~~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l~ 84 (104)
T 1hko_A 5 SKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELH 84 (104)
T ss_dssp CCCCEEECHHHHHHCBSSSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCCHHHHHHHTTTEEEEEC
T ss_pred cccCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHHHcCCCHHHHHHHHcCeeEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999988999999999999999998
Q ss_pred CCCCCC
Q 032775 82 PSTVPR 87 (134)
Q Consensus 82 ~~~~~~ 87 (134)
..+.+.
T Consensus 85 ~~~~~~ 90 (104)
T 1hko_A 85 PDDRSK 90 (104)
T ss_dssp TTSSTT
T ss_pred Cccccc
Confidence 765443
No 5
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=99.96 E-value=1.6e-30 Score=173.31 Aligned_cols=84 Identities=51% Similarity=0.894 Sum_probs=77.6
Q ss_pred CCC-CCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEE
Q 032775 1 MAS-DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGD 79 (134)
Q Consensus 1 m~~-~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~ 79 (134)
|++ +++.||++||++|++.++|||+|+|+|||||+|+..||||..+|+.++|+|+|+.|...+||.+|+++|++|+||+
T Consensus 1 m~~~~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs~~a~~~L~~~~IG~ 80 (88)
T 2ibj_A 1 MSSEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGE 80 (88)
T ss_dssp --CCCCCEECHHHHHTSEETTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCCHHHHHHHGGGEEEE
T ss_pred CCCccCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCCHHHHHHHHcCceEE
Confidence 544 6789999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred eCCCC
Q 032775 80 IDPST 84 (134)
Q Consensus 80 l~~~~ 84 (134)
+...+
T Consensus 81 l~~~~ 85 (88)
T 2ibj_A 81 LVAEE 85 (88)
T ss_dssp ECGGG
T ss_pred eCccc
Confidence 97543
No 6
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=99.95 E-value=4.1e-29 Score=167.23 Aligned_cols=79 Identities=32% Similarity=0.737 Sum_probs=73.9
Q ss_pred CCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhh----hcCCCHHHHHhhhcCeeEE
Q 032775 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFE----DVGHSDSAREMMDKYYIGD 79 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~----~~~Hs~~a~~~l~~~~VG~ 79 (134)
..+.||++||++|++.++|||+|+|+|||||+|+..||||.++|+.++|+|+|+.|. +..||.+|+++|++|+||+
T Consensus 6 ~~~~~t~~Ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~~~~~Hs~~a~~~L~~~~IG~ 85 (90)
T 1cxy_A 6 TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIGT 85 (90)
T ss_dssp CCCBCCHHHHTTCEETTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCHHHHHHHHHTEEEE
T ss_pred cCCCcCHHHHHHhcCCCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHhhcccccCCCHHHHHHHHhCceeE
Confidence 468999999999999999999999999999999999999999999999999999999 5789999999999999999
Q ss_pred eCC
Q 032775 80 IDP 82 (134)
Q Consensus 80 l~~ 82 (134)
++.
T Consensus 86 l~~ 88 (90)
T 1cxy_A 86 LEE 88 (90)
T ss_dssp C--
T ss_pred eCC
Confidence 963
No 7
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=99.95 E-value=1.2e-28 Score=162.37 Aligned_cols=78 Identities=32% Similarity=0.626 Sum_probs=69.8
Q ss_pred CCCCCCcCHHHHhcccCCCC-eEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhh---cCCCHHHHHhhhcCee
Q 032775 2 ASDPKIHQFEEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFED---VGHSDSAREMMDKYYI 77 (134)
Q Consensus 2 ~~~~~~~t~~ev~~h~~~~~-~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~---~~Hs~~a~~~l~~~~V 77 (134)
+++++.||++||++|++.++ |||+|+|+|||||+|++.||||.+.|+.++|+| |+.|+. .+||..|+++|++|+|
T Consensus 1 ~~~~~~~t~~ev~~h~~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D-t~~f~~~~~~~hs~~a~~~L~~~~I 79 (82)
T 1mj4_A 1 QESTHIYTKEEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP-LEPFWALYAVHNQSHVRELLAQYKI 79 (82)
T ss_dssp --CCCBCCCC-CTTCEETTTEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB-SHHHHTTCGGGCSHHHHHHHHTTEE
T ss_pred CCCCCccCHHHHHHhcCCCCCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC-hHHHHhhccccCcHHHHHHHHhCcc
Confidence 35679999999999999998 999999999999999999999988888999999 678875 5799999999999999
Q ss_pred EEe
Q 032775 78 GDI 80 (134)
Q Consensus 78 G~l 80 (134)
|+|
T Consensus 80 G~l 82 (82)
T 1mj4_A 80 GEL 82 (82)
T ss_dssp EEC
T ss_pred eeC
Confidence 986
No 8
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=99.95 E-value=1e-28 Score=162.68 Aligned_cols=77 Identities=35% Similarity=0.591 Sum_probs=73.5
Q ss_pred CCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchh--hhhcC--CCHHHHHhhhcCeeEE
Q 032775 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATND--FEDVG--HSDSAREMMDKYYIGD 79 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~--f~~~~--Hs~~a~~~l~~~~VG~ 79 (134)
.++.||++||++|++.++|||+|+|+|||||+|++.|||| ++|+.++|+|+|+. |++.| ||..++++|++|+||+
T Consensus 2 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~D~T~~~~F~~~h~~hs~~a~~~L~~~~IG~ 80 (82)
T 1x3x_A 2 GDKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQDATSVLKTLAPHVKAADVVMKKLKQTCIGK 80 (82)
T ss_dssp CSCEECHHHHHTCEETTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTSBCHHHHHHSHHHHHTHHHHHHHHHHHEEEE
T ss_pred CCCccCHHHHHhhCCCCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCCCCchhhhhhcccccchHHHHHHHHhCcceE
Confidence 3689999999999999999999999999999999999999 99999999999999 99988 8999999999999999
Q ss_pred eC
Q 032775 80 ID 81 (134)
Q Consensus 80 l~ 81 (134)
+.
T Consensus 81 l~ 82 (82)
T 1x3x_A 81 VK 82 (82)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 9
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=99.94 E-value=4.2e-30 Score=178.36 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=77.8
Q ss_pred CCCCCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHHHhhhcCeeEEe
Q 032775 1 MASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYYIGDI 80 (134)
Q Consensus 1 m~~~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~~~l~~~~VG~l 80 (134)
|.++++.||++||++|++.++|||+|+|+|||||+|+..||||.++|+.++|+|+|+.|+.++||.+|+++|++|+||++
T Consensus 19 m~~~~~~~t~~Ev~~h~~~~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs~~a~~~L~~~~IG~l 98 (112)
T 2keo_A 19 NNEKVTLVRIADLENHNNDGGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQFEDTRESMHAFCVGQY 98 (112)
T ss_dssp --CCCCEECHHHHHHHHHHTCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHSTTGGGTHHHHEEEEE
T ss_pred CCCCCCccCHHHHHHhcCCCCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHhHcCCCHHHHHHHHhCceEee
Confidence 56678999999999999999999999999999999999999999999999999999999997799999999999999999
Q ss_pred CCCC
Q 032775 81 DPST 84 (134)
Q Consensus 81 ~~~~ 84 (134)
...+
T Consensus 99 ~~~e 102 (112)
T 2keo_A 99 LEPD 102 (112)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7543
No 10
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=99.88 E-value=1.1e-22 Score=169.96 Aligned_cols=81 Identities=26% Similarity=0.528 Sum_probs=75.2
Q ss_pred CCCCCcCHHHHhcccCCCC-eEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhh---cCCCHHHHHhhhcCeeE
Q 032775 3 SDPKIHQFEEVATHNKTKD-CWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFED---VGHSDSAREMMDKYYIG 78 (134)
Q Consensus 3 ~~~~~~t~~ev~~h~~~~~-~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~---~~Hs~~a~~~l~~~~VG 78 (134)
.+++.||++||++|++.++ |||+|+|+|||||+|+++||||.++|+.++|+| |+.|++ .+||.+++++|++|+||
T Consensus 2 ~~~~~~t~~Ev~~H~~~~d~~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~D-T~~f~~~~~~~Hs~~a~~~L~~~~IG 80 (466)
T 1sox_A 2 PSYPEYTREEVGRHRSPEERVWVTHGTDVFDVTDFVELHPGGPDKILLAAGGA-LEPFWALYAVHGEPHVLELLQQYKVG 80 (466)
T ss_dssp -CCCEECHHHHTTCEETTTEEEEEETTEEEECTTTTTTSTTCHHHHGGGTTSB-SHHHHHHSGGGGSHHHHHHHHTTEEE
T ss_pred CCCCeeCHHHHHHhcCCCCceEEEECCEEEechHhHhhCcCCcccchhhcCCc-cccccccccccCCHHHHHHHHhCceE
Confidence 4678999999999999999 999999999999999999999999999999999 999985 57999999999999999
Q ss_pred EeCCCC
Q 032775 79 DIDPST 84 (134)
Q Consensus 79 ~l~~~~ 84 (134)
.|...+
T Consensus 81 ~l~~~~ 86 (466)
T 1sox_A 81 ELSPDE 86 (466)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 998654
No 11
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=99.86 E-value=2.3e-22 Score=169.61 Aligned_cols=82 Identities=37% Similarity=0.703 Sum_probs=74.2
Q ss_pred CCCCcCHHHHhcccCCCCeEEEEcCEEEeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCHHHH-Hhh-hcCeeEEeC
Q 032775 4 DPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAR-EMM-DKYYIGDID 81 (134)
Q Consensus 4 ~~~~~t~~ev~~h~~~~~~wvvi~g~VYDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~a~-~~l-~~~~VG~l~ 81 (134)
.++.||++||++|++.++|||+|+|+|||||+|+++||||.++|+.++|+|+|+.|+.. |+.++. ++| ++|+||.++
T Consensus 7 ~~~~~t~~ev~~h~~~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~-H~~~~~~~~l~~~~~iG~l~ 85 (511)
T 1kbi_A 7 NKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAPNVIDKYIAPEKKLGPLQ 85 (511)
T ss_dssp CSCCBCTTHHHHCEETTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGG-SCTTHHHHHSCGGGEEEEBC
T ss_pred CCCccCHHHHHHhCCCCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhhc-CCHHHHHHhhccccEEEEec
Confidence 46899999999999999999999999999999999999999999999999999999998 666664 555 789999998
Q ss_pred CCCCC
Q 032775 82 PSTVP 86 (134)
Q Consensus 82 ~~~~~ 86 (134)
..+.+
T Consensus 86 ~~~~~ 90 (511)
T 1kbi_A 86 GSMPP 90 (511)
T ss_dssp SCCCT
T ss_pred CCccc
Confidence 77655
No 12
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=99.73 E-value=8.8e-19 Score=119.48 Aligned_cols=61 Identities=26% Similarity=0.431 Sum_probs=54.2
Q ss_pred CCCcCHHHHhcccCCC---CeEEEEcCEEEeccccCC-CCCChHHHHHHhhCCCCchhhhhcCCCHH
Q 032775 5 PKIHQFEEVATHNKTK---DCWLIISGKVYDVSSFMD-DHPGGDEVLISATGKDATNDFEDVGHSDS 67 (134)
Q Consensus 5 ~~~~t~~ev~~h~~~~---~~wvvi~g~VYDvt~f~~-~HPGG~~~l~~~aG~D~T~~f~~~~Hs~~ 67 (134)
.+.||++||++|++.+ +|||+|+|+|||||+|.. .||||. +..+||+|+|+.|...+|+.+
T Consensus 2 ~~~~T~~El~~~ng~~~~~~~~vaI~G~VYDVT~~~~~~hPGG~--~~~~AG~DaT~~f~~~~~~~~ 66 (102)
T 1j03_A 2 PMEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGD--YSMFAGKDASRALGKMSKNEE 66 (102)
T ss_dssp CCCCCHHHHTTCBSCSSSCCBEEEETTEEEECGGGHHHHSSSST--TTTTTTSBCHHHHHHTCCCSS
T ss_pred CcccCHHHHHHhcCCCCCCCEEEEECCEEEECCCCccccCCCCc--ccccccchHHHHHHHcCCChh
Confidence 3789999999999976 799999999999999976 799998 358999999999998888653
No 13
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=30.04 E-value=49 Score=17.70 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH-Hhh
Q 032775 115 LVPLLILGLAFAVR-HYT 131 (134)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~ 131 (134)
++|+.++|+.++.| .|.
T Consensus 13 lipvtlaGLfv~Ay~Qyr 30 (37)
T 1q90_G 13 LVPVTIAGLFVTAYLQYL 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 46777888777766 443
No 14
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=29.31 E-value=3.8 Score=34.14 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=26.0
Q ss_pred EeccccCCCCCChHHHHHHhhCCCCchhhhhcCCCH
Q 032775 31 YDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSD 66 (134)
Q Consensus 31 YDvt~f~~~HPGG~~~l~~~aG~D~T~~f~~~~Hs~ 66 (134)
+|+.+|+..||.|..++.+..||+.- |+-..|..
T Consensus 427 ~Digefvr~~P~gr~i~~~lg~K~~V--M~Lm~h~d 460 (480)
T 1ho8_A 427 NDITHVVELLPESIDVLDKTGGKADI--MELLNHSD 460 (480)
T ss_dssp HHHHHHHHHCTTHHHHHHHHSHHHHH--HHHTSCSS
T ss_pred ccHHHHHHHCcchhHHHHHcCcHHHH--HHHhcCCC
Confidence 79999999999999999988776533 33334553
No 15
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=26.14 E-value=44 Score=17.88 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH-Hhh
Q 032775 115 LVPLLILGLAFAVR-HYT 131 (134)
Q Consensus 115 ~~~~~~~~~~~~~~-~~~ 131 (134)
++|+.++++.++.| .|-
T Consensus 13 lipvtl~GLfv~Ay~Qyr 30 (37)
T 1vf5_G 13 LVFATLGGLFYAAYQQYK 30 (37)
T ss_dssp HHHHHHHHHTHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 46777888766666 443
Done!