BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032777
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 39/43 (90%)
Query: 34 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE 76
AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE
Sbjct: 51 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 39/43 (90%)
Query: 34 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE 76
AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE
Sbjct: 52 ASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 94
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 38/43 (88%)
Query: 34 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE 76
AS+KCQ+EKRKT+NG+D+L+AM +LGFE+Y + LK YL +YRE
Sbjct: 50 ASEKCQQEKRKTVNGEDILFAMTSLGFENYAEALKIYLSKYRE 92
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 34 ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71
A++ C K ++KTI+ + ++ A+ +LGF YI +K L
Sbjct: 57 ANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVL 94
>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 128
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75
K+ KTI D+L + L FE ++ L L YR
Sbjct: 56 AHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEVYR 93
>pdb|2QA0|A Chain A, Structure Of Adeno-Associated Virus Serotype 8
pdb|3RA2|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA4|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA8|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA9|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RAA|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
Length = 519
Score = 29.3 bits (64), Expect = 0.65, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 98 GALPG---QNAQYALQGPLNYANPHAQGQHMIVPSMQG 132
GALPG QN LQGP+ PH G P M G
Sbjct: 383 GALPGMVWQNRDVYLQGPIWAKIPHTDGNFHPSPLMGG 420
>pdb|3SHM|A Chain A, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|B Chain B, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|C Chain C, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|D Chain D, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|E Chain E, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|F Chain F, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|G Chain G, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|H Chain H, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|I Chain I, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|J Chain J, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|K Chain K, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|L Chain L, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|M Chain M, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|N Chain N, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|O Chain O, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|P Chain P, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|Q Chain Q, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|R Chain R, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|S Chain S, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|T Chain T, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
Length = 516
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 97 IGALPG---QNAQYALQGPLNYANPHAQGQHMIVPSMQG 132
+GALPG Q+ LQGP+ PH G P M G
Sbjct: 379 MGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLMGG 417
>pdb|1LP3|A Chain A, The Atomic Structure Of Adeno-Associated Virus (Aav-2), A
Vector For Human Gene Therapy
pdb|3J1S|A Chain A, Structure Of Adeno-Associated Virus-2 In Complex With
Neutralizing Monoclonal Antibody A20
Length = 519
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 86 RGGDGSAKRD--TIGALPG---QNAQYALQGPLNYANPHAQGQHMIVPSMQG 132
RG +A D T G LPG Q+ LQGP+ PH G P M G
Sbjct: 369 RGNRQAATADVNTQGVLPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLMGG 420
>pdb|1VU0|U Chain U, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|V Chain V, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|W Chain W, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|X Chain X, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|Y Chain Y, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|Z Chain Z, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|AA Chain a, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|BB Chain b, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|CC Chain c, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|DD Chain d, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|EE Chain e, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|FF Chain f, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|GG Chain g, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|HH Chain h, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|II Chain i, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|JJ Chain j, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|KK Chain k, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|LL Chain l, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|MM Chain m, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|NN Chain n, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|OO Chain o, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|PP Chain p, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|QQ Chain q, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|RR Chain r, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|SS Chain s, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|TT Chain t, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|UU Chain u, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|VV Chain v, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|WW Chain w, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|XX Chain x, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|YY Chain y, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|ZZ Chain z, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|0 Chain 0, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|1 Chain 1, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|2 Chain 2, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|3 Chain 3, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|4 Chain 4, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|5 Chain 5, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|6 Chain 6, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|7 Chain 7, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|A Chain A, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|B Chain B, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|C Chain C, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|D Chain D, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|E Chain E, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|F Chain F, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|G Chain G, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|H Chain H, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|I Chain I, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|J Chain J, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|K Chain K, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|L Chain L, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|M Chain M, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|N Chain N, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|O Chain O, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|P Chain P, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|Q Chain Q, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|R Chain R, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|S Chain S, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|T Chain T, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
Length = 520
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 97 IGALPG---QNAQYALQGPLNYANPHAQGQHMIVPSMQG 132
+GALPG Q+ LQGP+ PH G P M G
Sbjct: 383 MGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLMGG 421
>pdb|3OAH|A Chain A, Structural Characterization Of The Dual Glycan Binding
Adeno- Associated Virus Serotype 6
Length = 534
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 97 IGALPG---QNAQYALQGPLNYANPHAQGQHMIVPSMQG 132
+GALPG Q+ LQGP+ PH G P M G
Sbjct: 397 MGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLMGG 435
>pdb|1W5S|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5S|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adp Form)
pdb|1W5T|A Chain A, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|B Chain B, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
pdb|1W5T|C Chain C, Structure Of The Aeropyrum Pernix Orc2 Protein (Adpnp-Adp
Complexes)
Length = 412
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 56 ATLGFEDYI-DPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIG 98
A LG D + +P R+ E+ D G +GGDGSA+R +
Sbjct: 228 AELGLRDTVWEP------RHLELISDVYGEDKGGDGSARRAIVA 265
>pdb|3J1Q|A Chain A, Structure Of Aav-Dj, A Retargeted Gene Therapy Vector:
Cryo-Electron Microscopy At 4.5a Resolution
Length = 737
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 90 GSAKRDTIGALPG---QNAQYALQGPLNYANPHAQGQHMIVPSMQG 132
+A +T G LPG Q+ LQGP+ PH G P M G
Sbjct: 593 ATADVNTQGVLPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLMGG 638
>pdb|3NG9|A Chain A, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|B Chain B, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|C Chain C, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|D Chain D, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|E Chain E, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|F Chain F, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|G Chain G, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|H Chain H, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|I Chain I, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|J Chain J, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
Length = 736
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 97 IGALPG---QNAQYALQGPLNYANPHAQGQHMIVPSMQG 132
+GALPG Q+ LQGP+ PH G P M G
Sbjct: 599 MGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLMGG 637
>pdb|3KIC|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIC|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|A Chain A, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|B Chain B, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|C Chain C, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|D Chain D, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|E Chain E, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|F Chain F, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|G Chain G, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|H Chain H, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|I Chain I, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|J Chain J, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|K Chain K, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|L Chain L, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|M Chain M, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|N Chain N, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|O Chain O, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|P Chain P, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|Q Chain Q, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|R Chain R, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|S Chain S, Crystal Structure Of Adeno-Associated Virus Serotype 3b
pdb|3KIE|T Chain T, Crystal Structure Of Adeno-Associated Virus Serotype 3b
Length = 736
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 98 GALPG---QNAQYALQGPLNYANPHAQGQHMIVPSMQG 132
GALPG Q+ LQGP+ PH G P M G
Sbjct: 600 GALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLMGG 637
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
Thermococcus Thioreducens Bound To Hydrolyzed Product At
0.99 Angstrom Resolution
Length = 178
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 63 YIDPLKAYLMRYREMEGD-TKGSARGGDGSAKRDTIGAL 100
++D + + RY+E++G TK G AKR+ + A+
Sbjct: 129 FLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAI 167
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
Complex With Substrate
pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
Length = 178
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 63 YIDPLKAYLMRYREMEGD-TKGSARGGDGSAKRDTIGAL 100
++D + + RY+E++G TK G AKR+ + A+
Sbjct: 129 FLDEIAHFFQRYKELQGKTTKIEGWGNAEEAKREILRAI 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,620,244
Number of Sequences: 62578
Number of extensions: 136971
Number of successful extensions: 256
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 250
Number of HSP's gapped (non-prelim): 22
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)