BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032777
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 83/102 (81%), Gaps = 3/102 (2%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ ASDKCQ+EKRKTINGDDLLWAMATLGFEDY++PLK YLMRYREMEGDTKGSA+
Sbjct: 70 ISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAK 129
Query: 87 GGDGSAKRDTIGALPGQNAQYALQGPLNYANPHAQGQHMIVP 128
GGD +AK+D + GQ +Q A QGP Y N AQ QHM+VP
Sbjct: 130 GGDPNAKKDGQSSQNGQFSQLAHQGP--YGNSQAQ-QHMMVP 168
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/137 (54%), Positives = 91/137 (66%), Gaps = 6/137 (4%)
Query: 1 MARSLRMLRILYRNVSLSSSASLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGF 60
M R L + + ++ + + SF++ ASDKCQ+EKRKTINGDDLLWAMATLGF
Sbjct: 43 MKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGF 102
Query: 61 EDYIDPLKAYLMRYREMEGDTKGSARGGDGSAKRDTIGALPGQNAQYALQGPLN---YAN 117
EDYIDPLK YLMRYREMEGDTKGS +GG+ SAKRD + Q +Q QG + Y N
Sbjct: 103 EDYIDPLKVYLMRYREMEGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQGPYGN 162
Query: 118 PHAQGQHMIVPSMQGNE 134
+QG +M+V M G E
Sbjct: 163 --SQGSNMMV-QMPGTE 176
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 62/71 (87%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ ASDKCQ+EKRKTINGDDLLWAMATLGFEDYI+PLK YL +YREMEGD+K +A+
Sbjct: 78 ISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAK 137
Query: 87 GGDGSAKRDTI 97
GDGS K+D +
Sbjct: 138 AGDGSVKKDVL 148
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 69/100 (69%), Gaps = 7/100 (7%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ ASDKCQ+EKRKTINGDDLLWAMATLGFEDYI+PLK YL +YREMEGD+K +A+
Sbjct: 71 ISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAK 130
Query: 87 GGDGSAKRDTIG-------ALPGQNAQYALQGPLNYANPH 119
DGS K+D +G A G Q A + Y P
Sbjct: 131 SSDGSIKKDALGHVGASSSAAEGMGQQGAYNQGMGYMQPQ 170
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ ASDKCQKEKRKT+NGDDLLWAMATLGFEDY++PLK YL RYRE+EGD KGS +
Sbjct: 61 ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGK 120
Query: 87 GGDGSAKRDTIGALPGQ 103
GDGS RD G + G+
Sbjct: 121 SGDGS-NRDAGGGVSGE 136
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ ASDKCQKEKRKTING+DLL+AM TLGFE+Y+DPLK YL +YRE+ GD+K S++
Sbjct: 74 ISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSK 133
Query: 87 GGDGSAKRDTIG 98
GDGS K+DTIG
Sbjct: 134 AGDGSVKKDTIG 145
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 58/75 (77%), Gaps = 4/75 (5%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ ASDKCQKEKRKTINGDDLLWAM TLGFEDY++PLK YL R+RE+EG+ G R
Sbjct: 67 ISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGR 126
Query: 87 ---GGD-GSAKRDTI 97
GG+ G +RD +
Sbjct: 127 PQTGGEVGEHQRDAV 141
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/71 (64%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ ASDKC KEKRKTINGDDL+W+M TLGFEDY++PLK YL YRE EGDTKGS R
Sbjct: 62 ISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKGS-R 120
Query: 87 GGDGSAKRDTI 97
+ K+D +
Sbjct: 121 ASELPVKKDVV 131
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 7/90 (7%)
Query: 7 MLRILYRNVSLSSSAS------LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGF 60
M + L N +S A + SF++ ASDKCQ+EKRKTINGDDLLWAM TLGF
Sbjct: 35 MKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGF 94
Query: 61 EDYIDPLKAYLMRYREMEGD-TKGSARGGD 89
EDY++PLK YL +YRE+EG+ T + R GD
Sbjct: 95 EDYVEPLKVYLQKYREVEGEKTTTAGRQGD 124
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ ASDKCQ+EKRKTINGDD++WA+ TLGFEDY+ PLK YL +YR+ EG+ S +
Sbjct: 76 ISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNSPK 135
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 66/112 (58%), Gaps = 6/112 (5%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ A+++CQ+E+RKTI +D+LWAM+ LGF+DYI+PL YL RYRE+EG+ S
Sbjct: 98 ISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCS 157
Query: 87 GGDGSAKRDTIGALP-GQNAQYALQGP---LNYANPHAQGQHMIVPSMQGNE 134
G S + P G +Y GP ++ A H + Q+ V GNE
Sbjct: 158 AGSVSMTNGLVVKRPNGTMTEYGAYGPVPGIHMAQYHYRHQNGFV--FSGNE 207
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGDTKGSA 85
SF++ AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL +YRE M+G+
Sbjct: 95 ISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEK---- 150
Query: 86 RGGDGSAKRDTIGALPGQNAQYALQGPLNYANPHAQGQHMIV 127
G + T A+P + + + GPL + A GQ V
Sbjct: 151 --GINATVVTTTDAIPEELTEESFSGPLATSIITADGQQQNV 190
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 7 MLRILYRNVSLSSSAS------LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGF 60
M IL N +S A + SF++ ASDKC KEKRKT+NGDD+ WAMA LGF
Sbjct: 65 MKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWAMANLGF 124
Query: 61 EDYIDPLKAYLMRYREMEGDTKG-SARGGDGSA 92
+DY LK YL RYR +EG+ +GG S+
Sbjct: 125 DDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSS 157
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSAR 86
SF++ A+++CQ+E+RKTI +D+LWAM+ LGF++Y+DPL ++ RYRE+E D +GSA
Sbjct: 99 ISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETD-RGSAL 157
Query: 87 GGDGSAKRDTIGA 99
G+ + R T G
Sbjct: 158 RGEPPSLRQTYGG 170
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKG 83
SF++ AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+ G
Sbjct: 92 ISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGG 151
Query: 84 SARGGDGSAKRDTIGALPGQ 103
+ GDG ++ T A Q
Sbjct: 152 TVTTGDGLSEELTEEAFTNQ 171
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 52/66 (78%), Gaps = 3/66 (4%)
Query: 28 SFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKGS 84
SF++ AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+ G+
Sbjct: 10 SFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGGT 69
Query: 85 ARGGDG 90
GDG
Sbjct: 70 VTTGDG 75
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/54 (61%), Positives = 47/54 (87%)
Query: 28 SFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDT 81
SF++ ASDKCQ+EKRKTING+D++ AM +LGFE+Y++PLK YL++YRE E ++
Sbjct: 89 SFITSEASDKCQQEKRKTINGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNS 142
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKG 83
SF++ AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+ G
Sbjct: 94 ISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGG 153
Query: 84 SARGGDGSAKRDTIGALPGQ 103
+ DG ++ T A Q
Sbjct: 154 AVSATDGLSEELTEEAFTNQ 173
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKG 83
SF++ AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+ G
Sbjct: 94 ISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGG 153
Query: 84 SARGGDGSAKRDTIGALPGQ 103
+ DG ++ T A Q
Sbjct: 154 AVSATDGLSEELTEEAFTNQ 173
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKG 83
SF++ AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+ G
Sbjct: 94 ISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGG 153
Query: 84 SARGGDGSAKRDTIGALPGQ 103
+ DG ++ T A Q
Sbjct: 154 AVTATDGLSEELTEEAFTNQ 173
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKG 83
SF++ AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+ G
Sbjct: 94 ISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGG 153
Query: 84 SARGGDGSAKRDTIGALPGQ 103
+ DG ++ T A Q
Sbjct: 154 AVTATDGLSEELTDEAFTNQ 173
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 51/67 (76%), Gaps = 3/67 (4%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYRE-MEGD--TKG 83
SF++ AS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL ++RE M+G+ G
Sbjct: 94 ISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAMKGEKGIGG 153
Query: 84 SARGGDG 90
+ DG
Sbjct: 154 AVTATDG 160
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Query: 7 MLRILYRNVSLSSSASLPAS------FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGF 60
M +IL N +S A SF++C AS+KC +E RKT+NGDD+ WA++TLG
Sbjct: 17 MKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDIWWALSTLGL 76
Query: 61 EDYIDPLKAYLMRYREMEGDTKGSARGGDGS 91
++Y D + +L +YRE E + +G + S
Sbjct: 77 DNYADAVGRHLHKYREAERERTEHNKGSNDS 107
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEG 79
SF++ ASD+C +KRKTING+D+L ++ LGFE+Y + LK YL +YR+ +
Sbjct: 77 ISFVTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQQQA 129
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 39/53 (73%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEG 79
SF++ AS++C +EKRKTI G+D+L A+ TLGFE+Y + LK L +YRE +
Sbjct: 47 ISFVTGEASEQCTQEKRKTITGEDVLLALNTLGFENYAEVLKISLTKYREQQA 99
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEG 79
SF++ A D+C KRKTING+D+L ++ LGFE+Y + LK YL +YR+ +
Sbjct: 62 ISFVTSEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQQQA 114
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREME 78
F+ AS+K + E R+T+ +D L + LGF+ Y+DP+ AY+ YRE E
Sbjct: 71 FVGDEASEKAKAEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFE 120
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 31 SCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGDTKGSARGGD 89
SC A++ K KRKT+N D+L AM + F+ +I PLK L YR D KG +
Sbjct: 50 SC-ANNFAMKGKRKTLNASDVLSAMEEMEFQRFITPLKEALEAYRR---DEKGKKEASE 104
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 31 SCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 84
SC A++ K KRKT+N D+L AM + F+ ++ PLK L Y RE +G + S
Sbjct: 50 SC-ANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 31 SCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 84
SC A++ K KRKT+N D+L AM + F+ ++ PLK L Y RE +G + S
Sbjct: 50 SC-ANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 31 SCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 84
SC A++ K KRKT+N D+L AM + F+ ++ PLK L Y RE +G + S
Sbjct: 50 SC-ANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 31 SCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY-REMEGDTKGS 84
SC A++ K KRKT+N D+L AM + F+ ++ PLK L Y RE +G + S
Sbjct: 50 SC-ANNFAMKGKRKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEAS 103
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL-KAYLMRYREMEGDTKGSA 85
+ +S ++D C KE ++TI + +L A+ LGF +YI+ + AY E DT+ S
Sbjct: 51 INLVSSESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSV 110
Query: 86 RGGDGS 91
+ G+
Sbjct: 111 KWNPGA 116
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREM 77
+S A++ C +KTIN + +L A+ LGF DY +A L +E+
Sbjct: 54 IHLISSEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCKEV 104
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75
+S A++ C K ++KTI+ + ++ A+ +LGF YI +K L +
Sbjct: 49 LISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75
+S A++ C K ++KTI+ + ++ A+ +LGF YI +K L +
Sbjct: 49 LISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75
+S A++ C K ++KTI+ + ++ A+ +LGF YI +K L +
Sbjct: 49 LISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75
+S A++ C K ++KTI+ + ++ A+ +LGF YI +K L +
Sbjct: 49 LISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK 95
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYREMEGD-TKGSARG 87
+S A++ C+KE +KTI + ++ A+ L F++YI ++E + + K S++
Sbjct: 49 LVSSEANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKF 108
Query: 88 GDGSAKRDTI 97
RD +
Sbjct: 109 EQSGVSRDEL 118
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63
+S A+D C +E+++TI + ++ A+ LGF DY
Sbjct: 50 LISSEANDICGREQKRTIAAEHVIKALTELGFSDY 84
>sp|Q6CNG7|DHYS_KLULA Deoxyhypusine synthase OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=DYS1 PE=3 SV=1
Length = 379
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 11/73 (15%)
Query: 22 SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFE--------DYIDPLKAYLMR 73
S+P +F+ D + E R + DL+ +MAT+GF+ D ID ++++
Sbjct: 20 SVPVPDNFVKVEGIDYSKPESR-NMRSKDLIKSMATMGFQASSLGKACDIIDEMRSWRGE 78
Query: 74 YREM--EGDTKGS 84
+R+ E D KGS
Sbjct: 79 HRDKLEEHDRKGS 91
>sp|A5GFT6|TSH2_PIG Teashirt homolog 2 OS=Sus scrofa GN=TSHZ2 PE=2 SV=1
Length = 1035
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 16 SLSSSASLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL---M 72
S S A P+S S C AS K + K ++L L EDY DPL+ L M
Sbjct: 438 SSDSLAPKPSSNSASDCTASTTELKRESKKEKPEELRTDEKVLKSEDYEDPLQKPLDPAM 497
Query: 73 RYREM-EGDTKGSARGG 88
+Y+ + E D + ++GG
Sbjct: 498 KYQYLREEDLEDGSKGG 514
>sp|Q12700|EXG_SCHOC Glucan 1,3-beta-glucosidase OS=Schwanniomyces occidentalis PE=3
SV=1
Length = 425
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 53 WAMATLGFEDYIDPLKAYLMR------------YREMEGDTKGSARGGDGSAKRDTIGAL 100
WA L ++ Y+ YL R + ++ G GS G D S RD++G
Sbjct: 125 WAFKLLDYDPYVQGQVKYLDRALDWARKYNLKVWIDLHG-APGSQNGFDNSGLRDSLGFQ 183
Query: 101 PGQNAQYALQ 110
G N + L+
Sbjct: 184 QGNNVNFTLE 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,386,217
Number of Sequences: 539616
Number of extensions: 1931031
Number of successful extensions: 3795
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3753
Number of HSP's gapped (non-prelim): 50
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)