Query 032777
Match_columns 134
No_of_seqs 136 out of 506
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:05:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 99.9 7.1E-27 2.4E-31 183.0 7.1 82 1-83 18-106 (179)
2 2byk_B Chrac-14; nucleosome sl 99.9 7.2E-26 2.5E-30 168.5 9.5 86 1-86 12-104 (128)
3 1n1j_A NF-YB; histone-like PAI 99.9 5.6E-24 1.9E-28 149.3 7.8 76 1-76 11-93 (93)
4 3b0c_W CENP-W, centromere prot 99.7 5.8E-18 2E-22 115.1 6.1 57 1-58 7-70 (76)
5 1f1e_A Histone fold protein; a 99.7 1.4E-17 4.7E-22 127.6 6.0 63 2-65 8-77 (154)
6 3b0c_T CENP-T, centromere prot 99.5 4.6E-14 1.6E-18 102.5 6.9 77 2-79 11-95 (111)
7 1b67_A Protein (histone HMFA); 99.5 8.3E-14 2.9E-18 92.0 6.0 56 2-58 6-67 (68)
8 2byk_A Chrac-16; nucleosome sl 99.5 1.1E-14 3.8E-19 109.7 1.5 84 1-84 22-115 (140)
9 4g92_C HAPE; transcription fac 99.3 8.6E-13 3E-17 96.5 5.1 63 1-63 44-112 (119)
10 1id3_B Histone H4; nucleosome 99.2 2.2E-11 7.4E-16 87.2 6.7 61 2-63 32-98 (102)
11 2hue_C Histone H4; mini beta s 99.2 1.5E-11 5.3E-16 84.8 5.7 61 2-63 14-80 (84)
12 1f1e_A Histone fold protein; a 99.2 1.5E-11 5E-16 94.2 5.4 57 1-58 85-147 (154)
13 1n1j_B NF-YC; histone-like PAI 99.2 1.4E-11 4.8E-16 87.0 4.6 65 1-65 22-92 (97)
14 1tzy_D Histone H4-VI; histone- 99.1 8E-11 2.7E-15 84.0 6.5 61 2-63 33-99 (103)
15 2yfw_B Histone H4, H4; cell cy 99.1 1.3E-10 4.5E-15 82.9 6.4 61 2-63 33-99 (103)
16 1ku5_A HPHA, archaeal histon; 98.9 2.2E-09 7.4E-14 71.3 5.6 54 2-56 10-69 (70)
17 1jfi_A Transcription regulator 98.5 4.3E-08 1.5E-12 69.3 3.7 64 1-64 14-83 (98)
18 3vh5_A CENP-S; histone fold, c 97.5 0.00013 4.6E-09 55.0 5.5 67 4-76 25-99 (140)
19 4dra_A Centromere protein S; D 97.4 0.00024 8.1E-09 51.9 5.8 68 4-77 33-108 (113)
20 2ly8_A Budding yeast chaperone 97.4 0.00028 9.4E-09 52.0 5.3 48 15-62 63-116 (121)
21 3v9r_A MHF1, uncharacterized p 97.2 0.0005 1.7E-08 48.2 5.2 54 4-57 18-79 (90)
22 3b0b_B CENP-S, centromere prot 97.2 0.00092 3.1E-08 48.2 6.3 67 4-76 25-99 (107)
23 2nqb_D Histone H2B; nucleosome 97.1 0.00085 2.9E-08 49.6 5.6 57 4-60 39-101 (123)
24 1tzy_B Histone H2B; histone-fo 97.1 0.00096 3.3E-08 49.5 5.6 57 4-60 42-104 (126)
25 1taf_B TFIID TBP associated fa 96.6 0.0045 1.5E-07 41.5 5.5 54 2-56 10-69 (70)
26 2jss_A Chimera of histone H2B. 96.5 0.0041 1.4E-07 48.2 5.4 59 4-62 9-73 (192)
27 2l5a_A Histone H3-like centrom 96.3 0.0024 8.1E-08 51.7 3.4 45 15-59 177-227 (235)
28 1f66_C Histone H2A.Z; nucleoso 95.6 0.024 8.4E-07 41.6 6.0 56 2-57 31-93 (128)
29 2f8n_G Core histone macro-H2A. 95.6 0.023 7.8E-07 41.3 5.5 56 2-57 26-87 (120)
30 2nqb_C Histone H2A; nucleosome 95.5 0.025 8.6E-07 41.2 5.6 55 2-57 27-88 (123)
31 1id3_C Histone H2A.1; nucleoso 95.5 0.027 9.4E-07 41.5 5.9 56 2-57 29-90 (131)
32 1tzy_A Histone H2A-IV; histone 95.4 0.028 9.6E-07 41.4 5.7 55 2-57 29-90 (129)
33 2f8n_K Histone H2A type 1; nuc 95.2 0.04 1.4E-06 41.6 6.0 55 2-57 48-109 (149)
34 1taf_A TFIID TBP associated fa 94.5 0.12 4E-06 34.2 6.2 53 4-57 7-65 (68)
35 2jss_A Chimera of histone H2B. 93.8 0.099 3.4E-06 40.3 5.4 55 3-57 110-171 (192)
36 1h3o_B Transcription initiatio 93.1 0.22 7.4E-06 33.7 5.5 55 3-57 10-70 (76)
37 2hue_B Histone H3; mini beta s 91.9 0.54 1.8E-05 31.8 6.3 47 13-59 22-74 (77)
38 3nqj_A Histone H3-like centrom 89.7 0.74 2.5E-05 31.5 5.4 47 13-59 24-76 (82)
39 1bh9_B TAFII28; histone fold, 84.4 1.7 5.7E-05 29.9 4.8 57 2-59 20-83 (89)
40 3r45_A Histone H3-like centrom 83.9 1.5 5.2E-05 33.3 4.8 44 14-57 99-148 (156)
41 1tzy_C Histone H3; histone-fol 83.4 2.5 8.7E-05 31.3 5.8 47 13-59 81-133 (136)
42 2yfv_A Histone H3-like centrom 83.2 2.8 9.7E-05 29.4 5.7 42 14-55 50-97 (100)
43 3nqu_A Histone H3-like centrom 82.9 2.1 7.3E-05 31.9 5.2 47 14-60 83-135 (140)
44 4dra_E Centromere protein X; D 77.8 6.6 0.00022 26.8 5.9 55 4-58 18-80 (84)
45 1k6k_A ATP-dependent CLP prote 74.5 4.7 0.00016 27.8 4.6 24 32-55 11-34 (143)
46 3kw6_A 26S protease regulatory 73.8 3.5 0.00012 26.1 3.5 32 27-58 42-73 (78)
47 3b0b_C CENP-X, centromere prot 70.8 12 0.00042 25.2 5.8 55 4-58 14-76 (81)
48 1khy_A CLPB protein; alpha hel 67.7 8.6 0.0003 26.5 4.7 28 32-59 15-42 (148)
49 2f3n_A SH3 and multiple ankyri 66.7 4.6 0.00016 26.0 2.9 22 46-67 5-26 (76)
50 3bq7_A Diacylglycerol kinase d 64.1 5.4 0.00019 25.9 2.9 24 45-68 9-32 (81)
51 3aji_B S6C, proteasome (prosom 63.4 8.2 0.00028 24.5 3.7 34 26-59 39-72 (83)
52 2y1q_A CLPC N-domain, negative 63.4 7.1 0.00024 27.1 3.6 28 32-59 15-42 (150)
53 3fh2_A Probable ATP-dependent 62.7 6.3 0.00021 27.6 3.2 28 31-58 15-42 (146)
54 2dzn_B 26S protease regulatory 60.8 9.7 0.00033 24.4 3.7 36 23-59 34-69 (82)
55 3vlf_B 26S protease regulatory 60.4 8.7 0.0003 25.1 3.4 35 27-61 40-74 (88)
56 2d8c_A Phosphatidylcholine:cer 60.3 4.1 0.00014 28.0 1.8 23 45-67 19-41 (97)
57 1kw4_A Polyhomeotic; SAM domai 57.4 7.6 0.00026 26.1 2.7 24 45-68 16-40 (89)
58 3fes_A ATP-dependent CLP endop 57.3 13 0.00044 26.0 4.1 29 31-59 16-44 (145)
59 5pal_A Parvalbumin; calcium-bi 57.2 22 0.00076 22.4 5.0 53 22-74 25-89 (109)
60 2krk_A 26S protease regulatory 56.5 12 0.0004 24.6 3.5 31 28-58 51-81 (86)
61 3v9r_B MHF2, uncharacterized p 52.8 11 0.00038 26.1 3.0 41 4-44 7-51 (88)
62 2gle_A Neurabin-1; SAM domain, 48.6 5.7 0.0002 25.1 0.9 22 46-67 7-28 (74)
63 2pvb_A Protein (parvalbumin); 48.6 47 0.0016 20.7 5.5 51 23-73 26-88 (108)
64 3fwb_A Cell division control p 47.6 37 0.0013 22.3 5.0 50 23-72 78-139 (161)
65 2fi0_A Conserved domain protei 47.0 9.2 0.00032 25.0 1.8 23 39-61 54-76 (81)
66 4ds7_A Calmodulin, CAM; protei 44.7 59 0.002 20.8 6.2 52 23-74 66-129 (147)
67 3fh2_A Probable ATP-dependent 44.6 30 0.001 24.0 4.3 30 30-59 89-118 (146)
68 2c9o_A RUVB-like 1; hexameric 44.3 14 0.00047 30.6 2.9 42 28-69 407-449 (456)
69 3fes_A ATP-dependent CLP endop 44.2 26 0.00088 24.4 3.9 30 30-59 89-118 (145)
70 2e8o_A SAM domain and HD domai 44.1 11 0.00038 25.6 1.9 18 45-62 29-46 (103)
71 4a4j_A Pacszia, cation-transpo 43.7 13 0.00044 21.7 1.9 18 44-61 48-65 (69)
72 1tiz_A Calmodulin-related prot 43.6 42 0.0014 18.8 4.5 35 38-72 10-44 (67)
73 3h4m_A Proteasome-activating n 43.5 23 0.00079 26.4 3.8 33 26-58 226-258 (285)
74 1pva_A Parvalbumin; calcium bi 43.4 58 0.002 20.3 5.5 51 23-73 27-89 (110)
75 3uk6_A RUVB-like 2; hexameric 43.4 16 0.00056 28.3 3.0 28 30-57 302-329 (368)
76 3fs7_A Parvalbumin, thymic; ca 43.2 59 0.002 20.3 5.6 52 22-73 26-89 (109)
77 3h4s_E KCBP interacting Ca2+-b 42.4 45 0.0015 22.3 4.9 25 36-60 47-71 (135)
78 1rwy_A Parvalbumin alpha; EF-h 42.0 61 0.0021 20.1 5.3 52 22-73 25-88 (109)
79 1exr_A Calmodulin; high resolu 41.6 72 0.0025 20.9 6.5 51 23-73 65-127 (148)
80 1bu3_A Calcium-binding protein 41.4 56 0.0019 20.4 5.0 52 22-73 26-89 (109)
81 2ovk_C Myosin catalytic light 40.2 65 0.0022 21.2 5.4 51 22-72 64-128 (159)
82 2lv7_A Calcium-binding protein 39.8 37 0.0013 22.2 4.0 41 33-73 40-80 (100)
83 3iwl_A Copper transport protei 39.4 16 0.00056 21.6 2.0 17 45-61 45-61 (68)
84 1pk1_B Sex COMB on midleg CG94 39.1 17 0.00057 24.5 2.1 24 45-68 16-41 (89)
85 2ovk_B RLC, myosin regulatory 38.7 44 0.0015 22.0 4.3 50 23-72 67-128 (153)
86 3qrx_A Centrin; calcium-bindin 38.4 85 0.0029 20.7 6.5 52 23-74 83-146 (169)
87 2bl0_C Myosin regulatory light 38.1 78 0.0027 20.2 5.6 52 23-74 61-124 (142)
88 2y1q_A CLPC N-domain, negative 37.6 28 0.00096 23.9 3.2 29 30-58 87-115 (150)
89 3bs7_A Protein aveugle; sterIl 36.8 20 0.00068 22.7 2.1 22 46-67 6-29 (78)
90 3dxs_X Copper-transporting ATP 36.6 16 0.00054 21.6 1.6 18 44-61 49-66 (74)
91 2kz2_A Calmodulin, CAM; TR2C, 35.8 69 0.0024 20.1 4.7 37 36-72 36-72 (94)
92 3ox6_A Calcium-binding protein 35.8 85 0.0029 20.0 6.2 52 23-74 66-134 (153)
93 1k6k_A ATP-dependent CLP prote 35.8 29 0.00099 23.6 3.0 29 30-58 87-115 (143)
94 2ktg_A Calmodulin, putative; e 35.7 57 0.002 19.3 4.1 36 37-72 22-57 (85)
95 3sjs_A URE3-BP sequence specif 35.6 83 0.0028 22.8 5.7 50 23-72 106-160 (220)
96 3k1j_A LON protease, ATP-depen 35.3 59 0.002 27.9 5.5 28 30-57 347-374 (604)
97 3j04_B Myosin regulatory light 34.7 60 0.0021 20.8 4.4 52 22-73 57-120 (143)
98 2joj_A Centrin protein; N-term 34.5 52 0.0018 19.1 3.8 34 38-71 16-49 (77)
99 1s6j_A CDPK, calcium-dependent 34.5 62 0.0021 19.3 4.2 36 38-73 32-67 (87)
100 1avs_A Troponin C; muscle cont 34.0 79 0.0027 19.1 4.8 35 38-72 29-63 (90)
101 1ixs_A Holliday junction DNA h 33.9 20 0.00068 22.6 1.7 14 49-62 18-31 (62)
102 3zri_A CLPB protein, CLPV; cha 33.8 32 0.0011 25.2 3.2 28 32-59 34-61 (171)
103 2i7a_A Calpain 13; calcium-dep 33.4 86 0.003 22.2 5.4 49 22-71 64-121 (174)
104 1v85_A Similar to ring finger 33.3 19 0.00064 23.9 1.6 23 44-66 18-42 (91)
105 1lv7_A FTSH; alpha/beta domain 33.2 49 0.0017 24.4 4.1 33 27-59 221-253 (257)
106 2mys_B Myosin; muscle protein, 33.2 98 0.0034 20.5 5.4 49 23-71 77-137 (166)
107 1k94_A Grancalcin; penta-EF-ha 33.2 1.1E+02 0.0037 20.4 6.4 53 22-74 58-115 (165)
108 1alv_A Calpain, S-camld; calci 33.0 1.1E+02 0.0036 20.7 5.6 52 22-73 65-121 (173)
109 3li6_A Calcium-binding protein 33.0 32 0.0011 19.4 2.5 24 38-61 9-32 (66)
110 2obh_A Centrin-2; DNA repair c 32.7 1E+02 0.0036 20.1 6.5 50 23-72 61-122 (143)
111 1rro_A RAT oncomodulin; calciu 32.6 90 0.0031 19.3 5.0 38 22-59 25-71 (108)
112 4b4t_L 26S protease subunit RP 32.3 38 0.0013 28.7 3.8 31 27-57 391-421 (437)
113 2xmm_A SSR2857 protein, ATX1; 31.8 28 0.00094 19.1 2.0 16 46-61 47-62 (64)
114 2p2u_A HOST-nuclease inhibitor 31.8 22 0.00075 26.5 2.0 19 47-65 108-126 (171)
115 1fnn_A CDC6P, cell division co 31.7 80 0.0027 24.2 5.3 38 30-67 246-283 (389)
116 3i5g_C Myosin catalytic light 31.7 1.1E+02 0.0038 21.0 5.7 50 22-71 64-127 (159)
117 2kn2_A Calmodulin; S MAPK phos 31.6 87 0.003 18.9 4.8 33 38-70 18-50 (92)
118 1uhk_A Aequorin 2, aequorin; E 31.5 1E+02 0.0034 20.7 5.3 25 37-61 117-141 (191)
119 3pxg_A Negative regulator of g 31.2 52 0.0018 27.4 4.4 31 31-61 14-44 (468)
120 4b4t_I 26S protease regulatory 30.8 42 0.0014 28.9 3.8 32 26-57 391-422 (437)
121 1khy_A CLPB protein; alpha hel 30.7 46 0.0016 22.6 3.4 28 30-57 90-117 (148)
122 3ezq_B Protein FADD; apoptosis 30.2 35 0.0012 24.1 2.7 30 46-75 64-93 (122)
123 3omb_A Extracellular solute-bi 30.1 22 0.00077 29.3 1.9 28 48-75 507-534 (535)
124 2pmy_A RAS and EF-hand domain- 30.0 73 0.0025 19.6 4.1 27 35-61 33-59 (91)
125 1j7q_A CAVP, calcium vector pr 29.7 61 0.0021 19.4 3.5 29 38-66 23-51 (86)
126 4b4t_M 26S protease regulatory 29.5 40 0.0014 28.6 3.4 33 26-58 390-422 (434)
127 2opo_A Polcalcin CHE A 3; calc 29.4 84 0.0029 18.7 4.2 23 37-59 19-41 (86)
128 1whz_A Hypothetical protein; a 29.3 28 0.00097 21.6 1.9 18 45-62 4-21 (70)
129 1gjy_A Sorcin, CP-22, V19; cal 29.2 1.3E+02 0.0044 20.1 5.5 53 22-74 60-117 (167)
130 2znd_A Programmed cell death p 29.2 1.3E+02 0.0044 20.1 6.2 50 23-72 63-117 (172)
131 3bs5_A Protein aveugle; sterIl 29.1 30 0.001 23.7 2.1 23 45-67 25-49 (106)
132 4b4t_J 26S protease regulatory 29.0 47 0.0016 28.1 3.8 32 26-57 357-388 (405)
133 1qv0_A Obelin, OBL; photoprote 28.9 92 0.0031 21.1 4.7 24 38-61 122-145 (195)
134 1exr_A Calmodulin; high resolu 28.4 92 0.0032 20.3 4.5 20 41-60 22-41 (148)
135 4b4t_H 26S protease regulatory 28.4 43 0.0015 29.0 3.5 32 27-58 419-450 (467)
136 2lmt_A Calmodulin-related prot 28.0 1E+02 0.0035 20.4 4.8 51 23-73 65-127 (148)
137 1wdc_B Scallop myosin; calcium 27.9 1.1E+02 0.0037 20.0 4.8 50 22-71 68-129 (156)
138 2b1u_A Calmodulin-like protein 27.8 58 0.002 18.4 3.1 31 39-69 16-46 (71)
139 1y9u_A Putative iron binding p 27.6 57 0.0019 24.4 3.7 55 22-76 253-318 (323)
140 1y1x_A Leishmania major homolo 27.5 1.5E+02 0.0053 20.4 6.2 39 23-61 82-125 (191)
141 3bs5_B Connector enhancer of k 27.1 41 0.0014 21.2 2.4 23 46-68 7-31 (80)
142 1osd_A MERP, hypothetical prot 26.9 37 0.0013 19.1 2.0 17 45-61 51-67 (72)
143 3sg6_A Gcamp2, myosin light ch 26.6 1.1E+02 0.0036 26.2 5.6 53 22-74 366-430 (450)
144 1w7j_B Myosin light chain 1; m 26.5 72 0.0025 20.7 3.7 39 23-61 67-119 (151)
145 2roe_A Heavy metal binding pro 26.2 32 0.0011 19.5 1.6 17 45-61 45-61 (66)
146 2l3m_A Copper-ION-binding prot 26.2 34 0.0012 19.3 1.8 17 45-61 53-69 (71)
147 1c7v_A CAVP, calcium vector pr 26.0 57 0.002 19.2 2.9 34 39-72 18-52 (81)
148 1cpz_A Protein (COPZ); copper 25.8 37 0.0013 18.8 1.9 17 45-61 48-64 (68)
149 1cc8_A Protein (metallochapero 25.8 36 0.0012 20.0 1.9 16 46-61 51-66 (73)
150 2xmw_A PACS-N, cation-transpor 25.6 30 0.001 19.4 1.4 16 46-61 51-66 (71)
151 3ox6_A Calcium-binding protein 25.6 1.3E+02 0.0046 19.1 5.1 21 41-61 23-43 (153)
152 3ksy_A SOS-1, SON of sevenless 25.2 67 0.0023 30.0 4.3 31 27-57 134-168 (1049)
153 3a09_A ALGQ1; sugar binding pr 25.2 34 0.0012 27.1 2.1 27 48-74 463-489 (490)
154 1u5t_A Appears to BE functiona 25.0 37 0.0013 26.9 2.2 35 24-58 89-141 (233)
155 1ixz_A ATP-dependent metallopr 24.9 61 0.0021 23.8 3.4 30 27-56 225-254 (254)
156 1o7b_T Tumor necrosis factor-i 24.9 55 0.0019 22.5 2.9 29 32-61 17-45 (98)
157 1irz_A ARR10-B; helix-turn-hel 24.9 83 0.0028 20.2 3.6 31 46-78 30-60 (64)
158 2obh_A Centrin-2; DNA repair c 24.6 92 0.0032 20.4 4.0 19 42-60 19-37 (143)
159 1k9u_A Polcalcin PHL P 7; poll 24.4 96 0.0033 18.0 3.7 21 39-59 13-33 (78)
160 3dtp_E RLC, myosin regulatory 24.2 76 0.0026 22.2 3.7 47 23-70 108-166 (196)
161 1juo_A Sorcin; calcium-binding 24.2 1.6E+02 0.0054 20.4 5.4 52 22-73 91-147 (198)
162 2qif_A Copper chaperone COPZ; 24.2 40 0.0014 18.3 1.8 17 45-61 50-66 (69)
163 2qz4_A Paraplegin; AAA+, SPG7, 24.1 28 0.00095 25.4 1.3 29 30-58 221-249 (262)
164 3zri_A CLPB protein, CLPV; cha 23.9 62 0.0021 23.7 3.2 29 30-58 106-135 (171)
165 2qby_A CDC6 homolog 1, cell di 23.8 44 0.0015 25.4 2.4 38 30-67 244-281 (386)
166 1aw0_A Menkes copper-transport 23.8 35 0.0012 19.2 1.5 16 46-61 52-67 (72)
167 2mys_C Myosin; muscle protein, 23.8 1.3E+02 0.0045 19.1 4.6 33 41-73 20-52 (149)
168 3cjk_B Copper-transporting ATP 23.6 46 0.0016 19.1 2.0 17 45-61 50-66 (75)
169 3fwb_A Cell division control p 23.4 1.4E+02 0.0049 19.2 4.8 22 40-61 34-55 (161)
170 2g3q_A Protein YBL047C; endocy 23.3 72 0.0024 18.0 2.8 24 48-73 4-27 (43)
171 2d58_A Allograft inflammatory 23.0 1E+02 0.0035 19.4 3.9 37 37-73 40-76 (107)
172 3vlv_A ALGQ1; sugar binding pr 22.8 32 0.0011 28.2 1.5 30 48-77 463-492 (502)
173 2qac_A Myosin A tail domain in 22.8 1.4E+02 0.0048 19.2 4.6 30 40-69 25-55 (146)
174 3k6j_A Protein F01G10.3, confi 22.8 1.3E+02 0.0044 25.7 5.4 52 7-61 218-272 (460)
175 2v1u_A Cell division control p 22.8 58 0.002 24.8 2.9 33 29-61 247-279 (387)
176 1wdc_C Scallop myosin; calcium 22.6 1.4E+02 0.0048 19.3 4.6 51 22-72 64-127 (156)
177 2kt2_A Mercuric reductase; nme 22.4 42 0.0014 18.8 1.7 16 46-61 48-63 (69)
178 1fvq_A Copper-transporting ATP 22.4 44 0.0015 18.8 1.7 17 45-61 49-65 (72)
179 2ean_A Connector enhancer of k 22.2 49 0.0017 21.1 2.1 22 46-67 11-34 (83)
180 2jjz_A Ionized calcium-binding 21.9 1.2E+02 0.0041 20.5 4.3 34 39-72 60-93 (150)
181 3fry_A Probable copper-exporti 21.7 41 0.0014 20.0 1.5 15 47-61 50-64 (73)
182 2bkm_A Truncated hemoglobin fr 21.7 1.2E+02 0.0041 20.5 4.2 59 22-80 47-122 (128)
183 1iy2_A ATP-dependent metallopr 21.6 75 0.0026 23.8 3.3 30 27-56 249-278 (278)
184 2ou2_A Histone acetyltransfera 21.5 47 0.0016 27.2 2.3 21 43-63 221-241 (280)
185 1qx2_A Vitamin D-dependent cal 21.4 74 0.0025 18.2 2.7 23 39-61 16-39 (76)
186 1fad_A Protein (FADD protein); 21.4 52 0.0018 21.6 2.1 26 46-71 72-97 (99)
187 1dlw_A Hemoglobin; oxygen stor 21.4 48 0.0016 22.1 2.0 55 22-76 44-111 (116)
188 1kvi_A Copper-transporting ATP 21.3 48 0.0016 19.3 1.8 17 45-61 56-72 (79)
189 3qrx_A Centrin; calcium-bindin 21.1 1.7E+02 0.0057 19.2 4.8 21 41-61 40-60 (169)
190 1yg0_A COP associated protein; 21.1 48 0.0016 18.2 1.7 16 46-61 49-64 (66)
191 2voz_A FUTA2, periplasmic iron 20.8 78 0.0027 23.8 3.3 55 22-76 277-342 (346)
192 2bmm_A Thermostable hemoglobin 20.6 1.1E+02 0.0039 20.4 3.8 56 22-77 45-117 (123)
193 2kp7_A Crossover junction endo 20.6 1.9E+02 0.0066 19.1 5.5 56 23-78 15-85 (87)
194 3pxi_A Negative regulator of g 20.5 1E+02 0.0035 27.1 4.4 29 32-60 15-43 (758)
195 1lng_A SRP19, signal recogniti 20.5 40 0.0014 22.8 1.4 21 46-66 29-49 (87)
196 4b4t_K 26S protease regulatory 20.4 93 0.0032 26.2 4.0 32 26-57 382-413 (428)
197 2ldi_A Zinc-transporting ATPas 20.3 48 0.0016 18.2 1.6 17 45-61 51-67 (71)
198 2k2p_A Uncharacterized protein 20.3 55 0.0019 20.4 2.0 16 46-61 68-83 (85)
199 1ich_A TNF-1, tumor necrosis f 20.1 54 0.0018 23.2 2.1 36 37-72 64-99 (112)
200 1r6b_X CLPA protein; AAA+, N-t 20.0 63 0.0022 28.2 2.9 26 32-57 11-36 (758)
201 3mse_B Calcium-dependent prote 20.0 1.3E+02 0.0043 20.6 4.1 24 38-61 48-71 (180)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.93 E-value=7.1e-27 Score=182.97 Aligned_cols=82 Identities=26% Similarity=0.429 Sum_probs=77.3
Q ss_pred ChhHHHHH-HhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 1 MARSLRML-RILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 1 ~anv~Rik-~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
+|||.||+ ++|| +++||+|| ||++||+|||++|+++|..++||||+++||++||++|||++|+++|+.+|+.
T Consensus 18 ~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~lk~~L~~ 96 (179)
T 1jfi_B 18 RAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQE 96 (179)
T ss_dssp HHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 48999995 5899 99999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCC
Q 032777 74 YREMEGDTKG 83 (134)
Q Consensus 74 yre~~~~kk~ 83 (134)
||+..+.|+.
T Consensus 97 yre~~~~kkr 106 (179)
T 1jfi_B 97 CKTVALKRRK 106 (179)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhCcc
Confidence 9998877643
No 2
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.93 E-value=7.2e-26 Score=168.45 Aligned_cols=86 Identities=26% Similarity=0.366 Sum_probs=78.7
Q ss_pred ChhHHHHHH-hcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 1 MARSLRMLR-ILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 1 ~anv~Rik~-~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
+|+|.||++ .+|++.+||+|| ||++||+|||++|+++|..++||||+++||++||+.+||.+|+++|+.+|..
T Consensus 12 ~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~lk~~l~~ 91 (128)
T 2byk_B 12 NAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSLTQDLEV 91 (128)
T ss_dssp CSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 589999976 899999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCC
Q 032777 74 YREMEGDTKGSAR 86 (134)
Q Consensus 74 yre~~~~kk~s~k 86 (134)
||+..+.||.+++
T Consensus 92 yr~~~~~kk~~~~ 104 (128)
T 2byk_B 92 YRKVVKEKKESKA 104 (128)
T ss_dssp HHHHHTTC-----
T ss_pred HHHHHHhhhhhhh
Confidence 9999988876543
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.90 E-value=5.6e-24 Score=149.29 Aligned_cols=76 Identities=42% Similarity=0.838 Sum_probs=72.6
Q ss_pred ChhHHHHH-HhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 1 MARSLRML-RILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 1 ~anv~Rik-~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
+|+|.||+ +.+|++.+||+|| |+.+||.||+++|++.|..++||||+++||++||+.|||.+|+++++.+|++
T Consensus 11 ~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~i~~~~~~l~~ 90 (93)
T 1n1j_A 11 IANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQK 90 (93)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhhHHHHHHHHHH
Confidence 37999995 5789999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 032777 74 YRE 76 (134)
Q Consensus 74 yre 76 (134)
||+
T Consensus 91 ~r~ 93 (93)
T 1n1j_A 91 FRE 93 (93)
T ss_dssp HHC
T ss_pred HhC
Confidence 985
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.72 E-value=5.8e-18 Score=115.09 Aligned_cols=57 Identities=14% Similarity=0.142 Sum_probs=53.2
Q ss_pred ChhHHHHHH-hcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 1 MARSLRMLR-ILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 1 ~anv~Rik~-~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
.|+|.||++ .+| +++||+|| |+.+||+||+++|++.|..++||||+++||++||++|
T Consensus 7 ~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 7 RGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp HHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 389999966 899 79999999 8999999999999999999999999999999998765
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.70 E-value=1.4e-17 Score=127.60 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=59.5
Q ss_pred hhHHHH-HHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchh
Q 032777 2 ARSLRM-LRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYID 65 (134)
Q Consensus 2 anv~Ri-k~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~ 65 (134)
|+|.|| |+.||. .+||+|| |+++|++||+++|+++|+..+||||+++||+|||..|||++|++
T Consensus 8 a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 8 AAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp HHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred cHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 789999 558897 9999999 89999999999999999999999999999999999999998865
No 6
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.49 E-value=4.6e-14 Score=102.50 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=70.7
Q ss_pred hhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHH-
Q 032777 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY- 74 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~y- 74 (134)
++|.||++.- ...+||+|+ |+.+|+..|+.+|..+|+..+||||+++||++||+..||..|..++..++++|
T Consensus 11 a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~l~~l~~~~l 89 (111)
T 3b0c_T 11 SLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVLVERHL 89 (111)
T ss_dssp HHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBCHHHHHHHHS
T ss_pred HHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccccHHHHHHHhC
Confidence 6899997644 589999999 79999999999999999999999999999999999999999999999999999
Q ss_pred -HHHhc
Q 032777 75 -REMEG 79 (134)
Q Consensus 75 -re~~~ 79 (134)
+|...
T Consensus 90 p~E~~~ 95 (111)
T 3b0c_T 90 PLEYRK 95 (111)
T ss_dssp CHHHHH
T ss_pred cHHHHH
Confidence 66544
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.46 E-value=8.3e-14 Score=91.96 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=52.4
Q ss_pred hhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
|+|.||++.. ++.+||+|| |+.+||.+|+++|++.|...+||||+++||.+|++.|
T Consensus 6 a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 6 APIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred cHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 7899997655 689999999 8999999999999999999999999999999999987
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.45 E-value=1.1e-14 Score=109.73 Aligned_cols=84 Identities=13% Similarity=0.129 Sum_probs=56.4
Q ss_pred ChhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHh-hhcCCCccChhHHHHHhhh---cCCccchhHHHHH
Q 032777 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKC-QKEKRKTINGDDLLWAMAT---LGFEDYIDPLKAY 70 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c-~~~kRKTI~~dDVL~AL~~---LgF~dyv~~Lk~~ 70 (134)
+|+|.||++.-|+..+||++| |+..||.||+.+|...| +..+||||+++||.+|+.. |+|-.++-|.+.+
T Consensus 22 laRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~divP~ki~ 101 (140)
T 2byk_A 22 LSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVPQKIR 101 (140)
T ss_dssp -------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTSCSCC-
T ss_pred HHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhccccchhh
Confidence 588999988779999999999 78999999999999999 9999999999999999985 5666666699999
Q ss_pred HHHHHHHhcccCCC
Q 032777 71 LMRYREMEGDTKGS 84 (134)
Q Consensus 71 L~~yre~~~~kk~s 84 (134)
|..|++..+.++..
T Consensus 102 l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 102 VHQFQEMLRLNRSA 115 (140)
T ss_dssp --------------
T ss_pred HHHHHHHHHhcccc
Confidence 99999987765543
No 9
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.34 E-value=8.6e-13 Score=96.54 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=57.3
Q ss_pred ChhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccc
Q 032777 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dy 63 (134)
+|+|.||++.-|+..+||+|| |+.+||.+|+++|.+.|+.++||||+++||..|++..+.-+|
T Consensus 44 vaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dF 112 (119)
T 4g92_C 44 LARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDF 112 (119)
T ss_dssp HHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGG
T ss_pred HHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhH
Confidence 489999999889999999999 799999999999999999999999999999999987653334
No 10
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.21 E-value=2.2e-11 Score=87.20 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=55.4
Q ss_pred hhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccc
Q 032777 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dy 63 (134)
++|.||.+..- -.+||.|+ |+.+||..|+.+|..+|+..+||||+++||++||+.+||.-|
T Consensus 32 ~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 32 PAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp HHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 68999977542 37899999 799999999999999999999999999999999999999866
No 11
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.21 E-value=1.5e-11 Score=84.83 Aligned_cols=61 Identities=21% Similarity=0.160 Sum_probs=55.4
Q ss_pred hhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccc
Q 032777 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dy 63 (134)
++|.||.+..- -.+||.|+ |+.+|+..|+.+|..+|+..+||||+++||.+||+.+||+-|
T Consensus 14 ~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 14 PAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp HHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred HHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 68999977552 37899999 799999999999999999999999999999999999999866
No 12
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.20 E-value=1.5e-11 Score=94.16 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=51.4
Q ss_pred ChhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
+|+|.||++-- ...+||+|| |+.+|+.+|+++|+++|+..+||||+++||++||+..
T Consensus 85 ~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 85 RATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 37899996533 688999999 8999999999999999999999999999999999863
No 13
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.19 E-value=1.4e-11 Score=86.96 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=59.7
Q ss_pred ChhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchh
Q 032777 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYID 65 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~ 65 (134)
+|+|.||++.-|+..+||+|| |+..||.+|+.+|.+.|+..+||||+++||.+|++..++-+|..
T Consensus 22 ~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 22 LARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp HHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred HHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 478999988779889999999 68899999999999999999999999999999999998887754
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.13 E-value=8e-11 Score=83.96 Aligned_cols=61 Identities=21% Similarity=0.161 Sum_probs=54.8
Q ss_pred hhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccc
Q 032777 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dy 63 (134)
++|.||.+..-. .+||.|+ |+.+||..|..+|..+|+..+||||+++||.+||+.+||+.|
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 33 PAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 689999764432 6999999 688999999999999999999999999999999999999766
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.10 E-value=1.3e-10 Score=82.91 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=51.7
Q ss_pred hhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccc
Q 032777 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dy 63 (134)
++|.||.+..-. .+||.|+ |+.+|+..|..+|..+|+..+||||+++||.+||+.+||+.|
T Consensus 33 ~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 33 PAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp HHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 689999764432 6999999 688999999999999999999999999999999999998766
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.90 E-value=2.2e-09 Score=71.27 Aligned_cols=54 Identities=22% Similarity=0.201 Sum_probs=49.1
Q ss_pred hhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhh
Q 032777 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~ 56 (134)
++|.||.+.. ...+||+|+ |+.+|+..|+..|+.+|+..|||||+++||..|++
T Consensus 10 a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 10 APVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 6899996544 578999999 79999999999999999999999999999999986
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.55 E-value=4.3e-08 Score=69.26 Aligned_cols=64 Identities=16% Similarity=0.064 Sum_probs=48.6
Q ss_pred ChhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccch
Q 032777 1 MARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYI 64 (134)
Q Consensus 1 ~anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv 64 (134)
++.|.||++.-|+..+||.|| ++-.|+.+|+..|...++..+||||+++||-.|++.-+.-+|.
T Consensus 14 vaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL 83 (98)
T 1jfi_A 14 PARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN 83 (98)
T ss_dssp HHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred hHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence 367888888889888999999 5779999999999999999999999999999999876555554
No 18
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.52 E-value=0.00013 Score=54.97 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=51.7
Q ss_pred HHHHH-H-hcCCCceeccch--h----HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHHH
Q 032777 4 SLRML-R-ILYRNVSLSSSA--S----LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 4 v~Rik-~-~LP~n~kISKDA--c----aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~yr 75 (134)
|.||- + ....++.||.|+ + +-.|+.-|+..+...|+..+||||++|||.-+++.- +.|..+|..|.
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~~ 98 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQKS 98 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHHH
Confidence 66773 3 566789999999 3 446667788889999999999999999999999973 45555555555
Q ss_pred H
Q 032777 76 E 76 (134)
Q Consensus 76 e 76 (134)
+
T Consensus 99 ~ 99 (140)
T 3vh5_A 99 D 99 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.44 E-value=0.00024 Score=51.88 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHH-HH-hcCCCceeccch--h----HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHHH
Q 032777 4 SLRM-LR-ILYRNVSLSSSA--S----LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 4 v~Ri-k~-~LP~n~kISKDA--c----aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~yr 75 (134)
|.|| ++ ....++.+|+|+ + +-.|+.-|+..+...|+-.|||||++|||.-+++. -+.|..+|..|.
T Consensus 33 V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr------~~~L~~~l~~~~ 106 (113)
T 4dra_A 33 VGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR------SNSLLKYITDKS 106 (113)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh------CHHHHHHHHHHH
Confidence 6788 33 456689999999 3 44666678888999999999999999999999987 367777777776
Q ss_pred HH
Q 032777 76 EM 77 (134)
Q Consensus 76 e~ 77 (134)
+.
T Consensus 107 ~e 108 (113)
T 4dra_A 107 EE 108 (113)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 20
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.00028 Score=52.00 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=42.6
Q ss_pred ceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCcc
Q 032777 15 VSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFED 62 (134)
Q Consensus 15 ~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~d 62 (134)
-+||.|+ ...+|+.-|...|..+++..+||||+++||.-||+..|-.-
T Consensus 63 kRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~l 116 (121)
T 2ly8_A 63 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTL 116 (121)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGG
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcC
Confidence 4688888 46799999999999999999999999999999999987543
No 21
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0005 Score=48.19 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=44.2
Q ss_pred HHHH-HHhcCCC-ceeccch--h----HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 4 SLRM-LRILYRN-VSLSSSA--S----LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 4 v~Ri-k~~LP~n-~kISKDA--c----aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
|.+| .+.++.+ +.+|.|+ + +-.++.-|+..+...|+..|||||++|||.-+++.
T Consensus 18 V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5677 4568876 9999999 3 34555567888999999999999999999999876
No 22
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.17 E-value=0.00092 Score=48.17 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=50.9
Q ss_pred HHHHH-H-hcCCCceeccch--h----HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHHH
Q 032777 4 SLRML-R-ILYRNVSLSSSA--S----LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 4 v~Rik-~-~LP~n~kISKDA--c----aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~yr 75 (134)
|.||- + ....+.++|+|+ + +-.|+.-|+..|..+|+-.+||||++|||.-|++.. +.|...|..|.
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn------~~l~~~l~~~~ 98 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQKS 98 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC------HHHHHHHHHHH
Confidence 67773 3 345578999999 3 456667789999999999999999999999999984 44555555554
Q ss_pred H
Q 032777 76 E 76 (134)
Q Consensus 76 e 76 (134)
+
T Consensus 99 ~ 99 (107)
T 3b0b_B 99 D 99 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.09 E-value=0.00085 Score=49.63 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=46.3
Q ss_pred HHHHHHhcCCCceeccch--h----HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCC
Q 032777 4 SLRMLRILYRNVSLSSSA--S----LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 4 v~Rik~~LP~n~kISKDA--c----aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF 60 (134)
|+|+.+.+-+++.||.+| . +..+..=|+.||...|.-.+|+||++.||-.|.+-|==
T Consensus 39 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 101 (123)
T 2nqb_D 39 IYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLP 101 (123)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCc
Confidence 678877666789999999 2 33444558999999999999999999999999876643
No 24
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.06 E-value=0.00096 Score=49.52 Aligned_cols=57 Identities=23% Similarity=0.227 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCceeccch--h----HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCC
Q 032777 4 SLRMLRILYRNVSLSSSA--S----LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 4 v~Rik~~LP~n~kISKDA--c----aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF 60 (134)
|+|+.+.+-+++.||.+| . +..+..-|+.||...+.-.+|+||++.||-.|.+-|==
T Consensus 42 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLp 104 (126)
T 1tzy_B 42 VYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLP 104 (126)
T ss_dssp HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSC
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 678877666789999999 2 33444558999999999999999999999999876643
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=96.58 E-value=0.0045 Score=41.46 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=45.2
Q ss_pred hhHHHHHHhcCCCceeccchh------HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhh
Q 032777 2 ARSLRMLRILYRNVSLSSSAS------LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDAc------aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~ 56 (134)
++|.||.+.+.- -+|+.|++ +..-+.-|..+|....+..||||++++||=.||+
T Consensus 10 ~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 10 ESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 578888887743 48999994 5566777999999999999999999999998885
No 26
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.46 E-value=0.0041 Score=48.22 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=46.6
Q ss_pred HHHHHHhcCCCceeccch--h----HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCcc
Q 032777 4 SLRMLRILYRNVSLSSSA--S----LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFED 62 (134)
Q Consensus 4 v~Rik~~LP~n~kISKDA--c----aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~d 62 (134)
|.|+.+..-++..||.|| . +..+..-|+.+|...+...+|+||++.||-.|++-+=-++
T Consensus 9 i~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpge 73 (192)
T 2jss_A 9 IYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGE 73 (192)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSH
T ss_pred HHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHH
Confidence 677866555579999999 2 4455566999999999999999999999999988554343
No 27
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0024 Score=51.73 Aligned_cols=45 Identities=20% Similarity=0.251 Sum_probs=39.4
Q ss_pred ceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 15 VSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 15 ~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
-+||.|+ ...+|+.-|...|..+|+..+||||+++||.-||+.+|
T Consensus 177 kRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 177 KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 3566666 36789999999999999999999999999999999874
No 28
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=95.64 E-value=0.024 Score=41.63 Aligned_cols=56 Identities=20% Similarity=0.096 Sum_probs=37.8
Q ss_pred hhHHHHHH-hcCCCceeccchh--HHH----HHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 2 ARSLRMLR-ILYRNVSLSSSAS--LPA----SFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~-~LP~n~kISKDAc--ase----FI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+.|-|+++ .-....+|+.+|. .+. |...|...|-..|+..+|++|+++||-.|+..
T Consensus 31 ~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 31 GRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 34555543 3333459999992 233 33445555677788899999999999999874
No 29
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=95.56 E-value=0.023 Score=41.33 Aligned_cols=56 Identities=18% Similarity=0.266 Sum_probs=38.2
Q ss_pred hhHHHHHHhcCCCceeccch--hHHHHHHH----HHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 2 ARSLRMLRILYRNVSLSSSA--SLPASFSF----LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA--caseFI~y----lTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+.|.|+++.--..-+|+.+| ..+.-+-| |.-.|-..|+..+|++|+++||-.|++.
T Consensus 26 ~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 26 GRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 45667744322234999999 23333444 4445666778899999999999999873
No 30
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=95.52 E-value=0.025 Score=41.25 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=38.5
Q ss_pred hhHHHHHH-hcCCCceeccch--hHHHHHHH----HHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 2 ARSLRMLR-ILYRNVSLSSSA--SLPASFSF----LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~-~LP~n~kISKDA--caseFI~y----lTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+.|.|+++ .--. -+|+.+| ..+.-+-| |...|-..|+..+|++|+++||-.|++.
T Consensus 27 ~ri~R~Lk~~~~a-~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 27 GRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HHHHHHHHHTTSC-SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 45677754 3233 3999999 23333444 4456777888899999999999999873
No 31
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=95.52 E-value=0.027 Score=41.50 Aligned_cols=56 Identities=23% Similarity=0.246 Sum_probs=38.4
Q ss_pred hhHHHHHHhcCCCceeccch--hHHHHHHH----HHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 2 ARSLRMLRILYRNVSLSSSA--SLPASFSF----LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA--caseFI~y----lTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+.|.|+++.--..-+|+.+| ..+.-+-| |.-.|-..|+..+|++|+++||-.|++.
T Consensus 29 ~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 29 GRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp HHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 45667754322224999999 23333344 4555777888999999999999999873
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=95.44 E-value=0.028 Score=41.35 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=38.5
Q ss_pred hhHHHHHH-hcCCCceeccch--hHHHHHHH----HHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 2 ARSLRMLR-ILYRNVSLSSSA--SLPASFSF----LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~-~LP~n~kISKDA--caseFI~y----lTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+.|.|+++ .-.. -+|+.+| ..+.-+-| |...|-..|...+|++|+++||-.|++.
T Consensus 29 ~rI~R~Lk~~~~a-~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 29 GRVHRLLRKGNYA-ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HHHHHHHHHTTSS-SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred HHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 45677754 3233 3999999 23333444 4555777788899999999999999873
No 33
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=95.19 E-value=0.04 Score=41.63 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=38.3
Q ss_pred hhHHHHHH-hcCCCceeccch--hHHHHHHH----HHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 2 ARSLRMLR-ILYRNVSLSSSA--SLPASFSF----LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 2 anv~Rik~-~LP~n~kISKDA--caseFI~y----lTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+.|.|+++ .-.. -+|+.+| ..+.-+-| |.-.|-..|+..+|++|+++||-.|++.
T Consensus 48 grI~R~LK~~~~a-~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 48 GRVHRLLRKGNYS-ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HHHHHHHHHTTSC-SEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHccccc-cccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 45667744 3333 3999999 23333444 4445777788899999999999999873
No 34
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=94.50 E-value=0.12 Score=34.25 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 4 SLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 4 v~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
|.||.+..-. -+++.++ .+-.++.=|..+|..+|...+||||++|||--|++.
T Consensus 7 i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 7 IMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 4566443211 2777777 244555568889999999999999999999888764
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=93.79 E-value=0.099 Score=40.35 Aligned_cols=55 Identities=22% Similarity=0.120 Sum_probs=36.8
Q ss_pred hHHHHHH-hcCCCceeccchh--HH----HHHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 3 RSLRMLR-ILYRNVSLSSSAS--LP----ASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 3 nv~Rik~-~LP~n~kISKDAc--as----eFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
.|.|+++ .-....+|+.+|. .+ .|+.-|.-.|...|+..+|++|+|+||-.|+..
T Consensus 110 ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 110 RIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp HHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred HHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 4555543 2222358999992 23 333445555777788899999999999999873
No 36
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=93.08 E-value=0.22 Score=33.70 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=47.4
Q ss_pred hHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 3 RSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 3 nv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
++.-+.+.+.++..+..|+ .|-+||.-+++.|...|+..+-.||...||.-.|+.
T Consensus 10 ~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 10 KLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 3444556678899999998 599999999999999999999999999999888764
No 37
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=91.89 E-value=0.54 Score=31.75 Aligned_cols=47 Identities=26% Similarity=0.148 Sum_probs=38.9
Q ss_pred CCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 13 RNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 13 ~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
.+.+++.+| .+-.|+--|...||..+...||+||.+.|+--|.+--|
T Consensus 22 ~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 22 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp SSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 478999999 34467777888999999999999999999988876543
No 38
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=89.71 E-value=0.74 Score=31.46 Aligned_cols=47 Identities=19% Similarity=0.046 Sum_probs=38.5
Q ss_pred CCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 13 RNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 13 ~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
.+.+++.+| .+-.|+--|...||-.|...||+||.++|+--|..--|
T Consensus 24 ~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 24 VDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 478999999 35577777888999999999999999999977765433
No 39
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=84.37 E-value=1.7 Score=29.91 Aligned_cols=57 Identities=18% Similarity=0.128 Sum_probs=43.4
Q ss_pred hhHHHHHHhcCCCceeccch------hHHHHHHHHHhHhhhHhhhcC-CCccChhHHHHHhhhcC
Q 032777 2 ARSLRMLRILYRNVSLSSSA------SLPASFSFLSCRASDKCQKEK-RKTINGDDLLWAMATLG 59 (134)
Q Consensus 2 anv~Rik~~LP~n~kISKDA------caseFI~ylTSeAnd~c~~~k-RKTI~~dDVL~AL~~Lg 59 (134)
++|.||...+- +.+++.+. -+-+||-=|..+|-+++...+ ..-|.|.||-.|.+.|.
T Consensus 20 ~~vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 20 AAIKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp HHHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 36777766442 55666555 477999999999999998865 45899999999987763
No 40
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=83.87 E-value=1.5 Score=33.34 Aligned_cols=44 Identities=18% Similarity=0.031 Sum_probs=37.0
Q ss_pred Cceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 14 NVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 14 n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+.+++.+| .+-.|+--|...||-.|.-.||+||.++||--|+.-
T Consensus 99 ~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 99 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 68999999 355677778889999999999999999999777643
No 41
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=83.38 E-value=2.5 Score=31.25 Aligned_cols=47 Identities=26% Similarity=0.128 Sum_probs=38.8
Q ss_pred CCceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 13 RNVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 13 ~n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
.+.+++.+| .+-.|+--|...||-.+...+|+||.+.||--|..--|
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 478999999 34467777889999999999999999999988865443
No 42
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=83.23 E-value=2.8 Score=29.41 Aligned_cols=42 Identities=24% Similarity=0.067 Sum_probs=35.0
Q ss_pred Cceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHh
Q 032777 14 NVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAM 55 (134)
Q Consensus 14 n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL 55 (134)
+.+++.+| .+-.|+--|...||-.+...||+||.+.|+--|.
T Consensus 50 ~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 50 PLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp -CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 78999998 3446777788999999999999999999997664
No 43
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=82.85 E-value=2.1 Score=31.90 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=38.8
Q ss_pred Cceeccch------hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCC
Q 032777 14 NVSLSSSA------SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 14 n~kISKDA------caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF 60 (134)
+.+++.+| .+-.|+--|...||-.|...||+||.++||--|+.--|-
T Consensus 83 ~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 83 DFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 68999999 355777778889999999999999999999888765443
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=77.79 E-value=6.6 Score=26.82 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=36.7
Q ss_pred HHHHHH-hc-CCCceeccch--hHHHHHHHHH----hHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 4 SLRMLR-IL-YRNVSLSSSA--SLPASFSFLS----CRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 4 v~Rik~-~L-P~n~kISKDA--caseFI~ylT----SeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
|.||.. .. .++++|++|| -..+++.... ..|.+.++.++-.+|..+|+-+.+-.|
T Consensus 18 i~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 18 VSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp HHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 566744 33 4689999999 3445554444 445555667778899999987765443
No 45
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=74.49 E-value=4.7 Score=27.76 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=22.2
Q ss_pred hHhhhHhhhcCCCccChhHHHHHh
Q 032777 32 CRASDKCQKEKRKTINGDDLLWAM 55 (134)
Q Consensus 32 SeAnd~c~~~kRKTI~~dDVL~AL 55 (134)
..|.+.|...+...|.++|+|.||
T Consensus 11 ~~A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 11 NMAFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp HHHHHHHHHHTBSEECHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHH
Confidence 578889999999999999999998
No 46
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=73.83 E-value=3.5 Score=26.12 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 27 I~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
|.-|..+|.-.|..+++..|+.+|+..||+.+
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 55577888888889999999999999999764
No 47
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=70.84 E-value=12 Score=25.16 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=35.9
Q ss_pred HHHHH-Hhc-CCCceeccch--hHHHHHHHHHhHh----hhHhhhcCCCccChhHHHHHhhhc
Q 032777 4 SLRML-RIL-YRNVSLSSSA--SLPASFSFLSCRA----SDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 4 v~Rik-~~L-P~n~kISKDA--caseFI~ylTSeA----nd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
|.||. ..- .++++|++|| -..+++.....|| ...++.++-..|..+|+=+.+-.|
T Consensus 14 I~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 14 VERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp HHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 45663 343 3689999999 3445555555555 444555788899999987655443
No 48
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=67.73 E-value=8.6 Score=26.47 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=24.5
Q ss_pred hHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 32 CRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 32 SeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
..|.+.|...+...|.++|+|.||=+-+
T Consensus 15 ~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 15 ADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 5788999999999999999999986544
No 49
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=66.67 E-value=4.6 Score=25.99 Aligned_cols=22 Identities=9% Similarity=-0.034 Sum_probs=18.6
Q ss_pred cChhHHHHHhhhcCCccchhHH
Q 032777 46 INGDDLLWAMATLGFEDYIDPL 67 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~dyv~~L 67 (134)
=+++||..-|+.+||++|++..
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F 26 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRF 26 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999999887654
No 50
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=64.08 E-value=5.4 Score=25.94 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=19.9
Q ss_pred ccChhHHHHHhhhcCCccchhHHH
Q 032777 45 TINGDDLLWAMATLGFEDYIDPLK 68 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~dyv~~Lk 68 (134)
.=+++||..-|+.+||++|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999886543
No 51
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=63.44 E-value=8.2 Score=24.55 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=28.2
Q ss_pred HHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 26 FI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
=|.-|..+|.-.|..+.+..|+.+|+..||+..-
T Consensus 39 Di~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 39 DINSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 3455667888888889999999999999998764
No 52
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=63.39 E-value=7.1 Score=27.06 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=24.5
Q ss_pred hHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 32 CRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 32 SeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
..|.+.|...+...|.++|+|.||=+-+
T Consensus 15 ~~A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 15 ALAQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 5788999999999999999999986544
No 53
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=62.69 E-value=6.3 Score=27.63 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=24.6
Q ss_pred HhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 31 SCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 31 TSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
-..|.+.|..-+...|.++|+|.||-+-
T Consensus 15 l~~A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 15 IVLAQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhC
Confidence 3678899999999999999999998654
No 54
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=60.85 E-value=9.7 Score=24.40 Aligned_cols=36 Identities=22% Similarity=0.044 Sum_probs=28.2
Q ss_pred HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 23 LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 23 aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
..+. .-|..+|.-.|..+.+..|+-+|+..|++..-
T Consensus 34 GADi-~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 34 GAVI-AAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHH-HHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHH-HHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 3443 33567888888888999999999999998863
No 55
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=60.42 E-value=8.7 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=28.2
Q ss_pred HHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCc
Q 032777 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 27 I~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
|.-|-.+|.-.|.++.+..|+-+|+..||+.+-..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcC
Confidence 45566778888888899999999999999976543
No 56
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=60.33 E-value=4.1 Score=28.04 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.3
Q ss_pred ccChhHHHHHhhhcCCccchhHH
Q 032777 45 TINGDDLLWAMATLGFEDYIDPL 67 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~dyv~~L 67 (134)
.-++|||..-|+.+||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 45899999999999999999765
No 57
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=57.41 E-value=7.6 Score=26.08 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.9
Q ss_pred ccChhHHHHHhhhc-CCccchhHHH
Q 032777 45 TINGDDLLWAMATL-GFEDYIDPLK 68 (134)
Q Consensus 45 TI~~dDVL~AL~~L-gF~dyv~~Lk 68 (134)
.-+.+||..-|+.+ ||++|++..+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45899999999999 9998876543
No 58
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=57.26 E-value=13 Score=25.98 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=25.2
Q ss_pred HhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 31 SCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 31 TSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
-..|.+.|..-+...|.++|||.||=+-+
T Consensus 16 l~~A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 16 IDLAFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 36788999999999999999999987654
No 59
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=57.17 E-value=22 Score=22.39 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=36.3
Q ss_pred hHHHHHHHHHh---------HhhhHhhhcCCCccChhHHHHHhhhc---CCccchhHHHHHHHHH
Q 032777 22 SLPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMRY 74 (134)
Q Consensus 22 caseFI~ylTS---------eAnd~c~~~kRKTI~~dDVL~AL~~L---gF~dyv~~Lk~~L~~y 74 (134)
.-.||+.++.. .+-...-.++...|+.+++..+|..+ |..---+.++..+..+
T Consensus 25 ~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 25 DYKRFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAG 89 (109)
T ss_dssp CHHHHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 35678887754 23344555788899999999999998 7665455555555543
No 60
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=56.53 E-value=12 Score=24.60 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=25.5
Q ss_pred HHHHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 28 SFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 28 ~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
.-|..+|.-.|.++.+..|+-+|+..||+..
T Consensus 51 ~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 51 KGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3356788888888889999999999998764
No 61
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=52.78 E-value=11 Score=26.10 Aligned_cols=41 Identities=5% Similarity=0.101 Sum_probs=28.9
Q ss_pred HHHHHHh--cCCCceeccch--hHHHHHHHHHhHhhhHhhhcCCC
Q 032777 4 SLRMLRI--LYRNVSLSSSA--SLPASFSFLSCRASDKCQKEKRK 44 (134)
Q Consensus 4 v~Rik~~--LP~n~kISKDA--caseFI~ylTSeAnd~c~~~kRK 44 (134)
+.||... =-++++|++|| .+.++|.....||--.|..+++.
T Consensus 7 laRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 7 LIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp HHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566431 25689999999 57777777777887777665554
No 62
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=48.63 E-value=5.7 Score=25.09 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=17.8
Q ss_pred cChhHHHHHhhhcCCccchhHH
Q 032777 46 INGDDLLWAMATLGFEDYIDPL 67 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~dyv~~L 67 (134)
=+++||..-|+.+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4689999999999988876543
No 63
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=48.59 E-value=47 Score=20.74 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=32.9
Q ss_pred HHHHHHHHHh---------HhhhHhhhcCCCccChhHHHHHhhhc---CCccchhHHHHHHHH
Q 032777 23 LPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMR 73 (134)
Q Consensus 23 aseFI~ylTS---------eAnd~c~~~kRKTI~~dDVL~AL~~L---gF~dyv~~Lk~~L~~ 73 (134)
-.||+.++.. .+-...-.++.-+|+.+++..+|..+ |..--.+.+...+..
T Consensus 26 ~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 88 (108)
T 2pvb_A 26 HKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLAD 88 (108)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 5577777643 23333445778899999999999999 554334445544443
No 64
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=47.63 E-value=37 Score=22.25 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=33.3
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
-.+|+.++... +-...-.++...|+.+++..+|..+|..--.+.+...+.
T Consensus 78 ~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 139 (161)
T 3fwb_A 78 YDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIE 139 (161)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 56788777643 222333467788999999999999997644444444443
No 65
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=46.98 E-value=9.2 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.5
Q ss_pred hhcCCCccChhHHHHHhhhcCCc
Q 032777 39 QKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 39 ~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
+.-.++-|+.|.++.+|+++||+
T Consensus 54 ~aa~~~gid~d~l~~~L~~~g~~ 76 (81)
T 2fi0_A 54 QGSKLAGTPMDKIVRTLEANGYE 76 (81)
T ss_dssp HHHHHHTCCHHHHHHHHHHTTCE
T ss_pred HHHHHcCCCHHHHHHHHHHcCCE
Confidence 33457779999999999999996
No 66
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=44.70 E-value=59 Score=20.77 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=35.2
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~y 74 (134)
-.+|+.++... +-...-.++...|+.+++..+|..+|..---+.+...+..+
T Consensus 66 ~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 66 FSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 56777776543 22233457788999999999999999654445555555554
No 67
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=44.57 E-value=30 Score=23.99 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=24.8
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
+-..|...|+.-+...|+.+|+|-||-+-+
T Consensus 89 vL~~A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 89 VLELSLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 345677888999999999999999986544
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=44.29 E-value=14 Score=30.62 Aligned_cols=42 Identities=10% Similarity=-0.024 Sum_probs=28.9
Q ss_pred HHHHhHhhhHhhhcCCCccChhHHHHHhhhc-CCccchhHHHH
Q 032777 28 SFLSCRASDKCQKEKRKTINGDDLLWAMATL-GFEDYIDPLKA 69 (134)
Q Consensus 28 ~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L-gF~dyv~~Lk~ 69 (134)
..+...|..+|..+++.+|+.+||..|+.-+ +...-++.|+.
T Consensus 407 ~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~~~~~~~~~ 449 (456)
T 2c9o_A 407 VQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILAD 449 (456)
T ss_dssp HHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChHHHHHHHHH
Confidence 3345667778888899999999999998664 33333333333
No 69
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=44.25 E-value=26 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=25.5
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
+-..|...|+.-+...|+.+|+|-||-+-+
T Consensus 89 vl~~A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 89 ILELSGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 446788889999999999999999997655
No 70
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.05 E-value=11 Score=25.59 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.8
Q ss_pred ccChhHHHHHhhhcCCcc
Q 032777 45 TINGDDLLWAMATLGFED 62 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~d 62 (134)
.=+++||..-|+.+||++
T Consensus 29 ~Ws~~~V~~WL~~lgl~~ 46 (103)
T 2e8o_A 29 TWGPEQVCSFLRRGGFEE 46 (103)
T ss_dssp GCHHHHHHHHHHHHTCCC
T ss_pred hCCHHHHHHHHHHcCCCh
Confidence 357899999999999997
No 71
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=43.69 E-value=13 Score=21.65 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=16.2
Q ss_pred CccChhHHHHHhhhcCCc
Q 032777 44 KTINGDDLLWAMATLGFE 61 (134)
Q Consensus 44 KTI~~dDVL~AL~~LgF~ 61 (134)
..++.++|+.+++++||+
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 568899999999999996
No 72
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=43.56 E-value=42 Score=18.76 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=24.3
Q ss_pred hhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
.-.++.-.|+.+++..+|..+|..--.+.+...+.
T Consensus 10 ~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 10 FDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp HCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34566778999999999999987644444444443
No 73
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=43.48 E-value=23 Score=26.44 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=27.1
Q ss_pred HHHHHHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 26 FI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
-|.-|..+|...|..+++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 455577788888888999999999999998765
No 74
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=43.41 E-value=58 Score=20.30 Aligned_cols=51 Identities=14% Similarity=0.207 Sum_probs=33.2
Q ss_pred HHHHHHHHHh---------HhhhHhhhcCCCccChhHHHHHhhhc---CCccchhHHHHHHHH
Q 032777 23 LPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMR 73 (134)
Q Consensus 23 aseFI~ylTS---------eAnd~c~~~kRKTI~~dDVL~AL~~L---gF~dyv~~Lk~~L~~ 73 (134)
-.+|+.++.. .+-...-.++.-+|+.+++..+|..+ |..--.+.++..+..
T Consensus 27 ~~ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 89 (110)
T 1pva_A 27 HKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKA 89 (110)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 5678777642 23334445788899999999999999 544333444444443
No 75
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=43.39 E-value=16 Score=28.28 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=22.9
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+-..|...|...++++|+.+||-.|++.
T Consensus 302 ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 302 LITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4455666777789999999999999986
No 76
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=43.24 E-value=59 Score=20.30 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=34.4
Q ss_pred hHHHHHHHHHh---------HhhhHhhhcCCCccChhHHHHHhhhc---CCccchhHHHHHHHH
Q 032777 22 SLPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTS---------eAnd~c~~~kRKTI~~dDVL~AL~~L---gF~dyv~~Lk~~L~~ 73 (134)
.-.||+.++.. .+-...-.++.-.|+.+++..+|..+ |..---+.++..+..
T Consensus 26 ~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~ 89 (109)
T 3fs7_A 26 NYKSFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAA 89 (109)
T ss_dssp CHHHHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 35678877643 23334445778899999999999999 555444455555443
No 77
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=42.45 E-value=45 Score=22.29 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=20.8
Q ss_pred hHhhhcCCCccChhHHHHHhhhcCC
Q 032777 36 DKCQKEKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 36 d~c~~~kRKTI~~dDVL~AL~~LgF 60 (134)
...-.++.-.|+.+++..+|..+|+
T Consensus 47 ~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 47 SLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 3344578889999999999999997
No 78
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=41.98 E-value=61 Score=20.15 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=32.9
Q ss_pred hHHHHHHHHHh---------HhhhHhhhcCCCccChhHHHHHhhhc---CCccchhHHHHHHHH
Q 032777 22 SLPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTS---------eAnd~c~~~kRKTI~~dDVL~AL~~L---gF~dyv~~Lk~~L~~ 73 (134)
.-.||+.++.. .+-...-.++.-+|+.+++..+|..+ |..--.+.+...+..
T Consensus 25 ~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 88 (109)
T 1rwy_A 25 DHKKFFQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAA 88 (109)
T ss_dssp CHHHHHHHHTGGGSCHHHHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHHHHHHH
T ss_pred eHHHHHHHHhcCcchHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 35677777642 23333445778899999999999999 544333444444443
No 79
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=41.61 E-value=72 Score=20.87 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
-.||+.++... |-...-.++.-.|+.+++..+|..+|..-=-+.+...+..
T Consensus 65 ~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 127 (148)
T 1exr_A 65 FPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIRE 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 56777766542 2333445777889999999999999865333445554443
No 80
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=41.37 E-value=56 Score=20.40 Aligned_cols=52 Identities=19% Similarity=0.120 Sum_probs=33.2
Q ss_pred hHHHHHHHHHh---------HhhhHhhhcCCCccChhHHHHHhhhc---CCccchhHHHHHHHH
Q 032777 22 SLPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATL---GFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTS---------eAnd~c~~~kRKTI~~dDVL~AL~~L---gF~dyv~~Lk~~L~~ 73 (134)
.-.||+.++.. .+-...-.++..+|+.+++..+|..+ |..--.+.++..+..
T Consensus 26 ~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 89 (109)
T 1bu3_A 26 NYKAFFAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKA 89 (109)
T ss_dssp CHHHHHHHHTGGGSCHHHHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHcChhhHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHHHHHHHH
Confidence 35577777642 22333445777889999999999999 554334455544443
No 81
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=40.18 E-value=65 Score=21.23 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=34.1
Q ss_pred hHHHHHHHHHh--------------HhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 22 SLPASFSFLSC--------------RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 22 caseFI~ylTS--------------eAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
.-.||+.++.. .|-...-.++.-+|+.+++..+|..+|..-=-+.+...+.
T Consensus 64 ~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 64 KLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp EHHHHHHHHHHHTTCSTTCCHHHHHHHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhccCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 35688887743 2334444577889999999999999986533344444444
No 82
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=39.85 E-value=37 Score=22.22 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=30.6
Q ss_pred HhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 33 RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 33 eAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
+|-...-.++.-+|+.+++-.+|+.||+.-=-+.++..+..
T Consensus 40 ~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 40 EAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp HHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 45556677889999999999999999986444555555543
No 83
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=39.42 E-value=16 Score=21.59 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=15.6
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.+++++|+.+++++||+
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (68)
T 3iwl_A 45 EHSMDTLLATLKKTGKT 61 (68)
T ss_dssp SSCHHHHHHHHHTTCSC
T ss_pred cCCHHHHHHHHHHcCCc
Confidence 57899999999999997
No 84
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=39.14 E-value=17 Score=24.48 Aligned_cols=24 Identities=4% Similarity=0.005 Sum_probs=19.4
Q ss_pred ccChhHHHHHhhhc--CCccchhHHH
Q 032777 45 TINGDDLLWAMATL--GFEDYIDPLK 68 (134)
Q Consensus 45 TI~~dDVL~AL~~L--gF~dyv~~Lk 68 (134)
.=|.|||..-|+.+ ||++|++..+
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~ 41 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFR 41 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHH
Confidence 45889999999998 7888886543
No 85
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=38.66 E-value=44 Score=21.98 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=31.9
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
-.+|+.++... +-...-.++.-+|+.+++..+|..+|..---+.+...+.
T Consensus 67 ~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 128 (153)
T 2ovk_B 67 FTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWK 128 (153)
T ss_dssp SHHHHHTTTTTTTTCCCTTHHHHHHHTTCSSCSSCCCHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45777776642 222233467788999999999999986533344444443
No 86
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=38.40 E-value=85 Score=20.74 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHh------------hhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHH
Q 032777 23 LPASFSFLSCRA------------SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 23 aseFI~ylTSeA------------nd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~y 74 (134)
-.||+.++.... -...-.++.-+|+.+++..+|..+|..---+.+...+..+
T Consensus 83 ~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 146 (169)
T 3qrx_A 83 FEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEA 146 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 567777765432 2233347888999999999999998654344555544433
No 87
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=38.14 E-value=78 Score=20.25 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=32.8
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~y 74 (134)
-.||+.++... +-...-.++.-.|+.+++..+|..+|..-=-+.+...+..+
T Consensus 61 ~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 124 (142)
T 2bl0_C 61 FPEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFLGIT 124 (142)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHTCCSSCSCEEHHHHHHHHHHSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 56787777642 22233346777899999999999998653334444444433
No 88
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=37.61 E-value=28 Score=23.87 Aligned_cols=29 Identities=10% Similarity=0.136 Sum_probs=23.8
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
+-..|...+..-+...|+++|+|.||-.-
T Consensus 87 vL~~A~~~A~~~~~~~i~~ehlLlall~~ 115 (150)
T 2y1q_A 87 VIELSMDEARKLGHSYVGTEHILLGLIRE 115 (150)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHhC
Confidence 44567888888899999999999998643
No 89
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=36.77 E-value=20 Score=22.70 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.7
Q ss_pred cChhHHHHHhhhc--CCccchhHH
Q 032777 46 INGDDLLWAMATL--GFEDYIDPL 67 (134)
Q Consensus 46 I~~dDVL~AL~~L--gF~dyv~~L 67 (134)
=+++||..-|+.+ ||+.|++..
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F 29 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLF 29 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHH
Confidence 3789999999997 888877554
No 90
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=36.56 E-value=16 Score=21.61 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=16.0
Q ss_pred CccChhHHHHHhhhcCCc
Q 032777 44 KTINGDDLLWAMATLGFE 61 (134)
Q Consensus 44 KTI~~dDVL~AL~~LgF~ 61 (134)
..++.++|+.+++.+||+
T Consensus 49 ~~~~~~~i~~~i~~~Gy~ 66 (74)
T 3dxs_X 49 NLVKEEDIKEEIEDAGFE 66 (74)
T ss_dssp TTCCHHHHHHHHHHHTCE
T ss_pred CCCCHHHHHHHHHHCCCc
Confidence 457899999999999996
No 91
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=35.82 E-value=69 Score=20.07 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=25.9
Q ss_pred hHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 36 DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 36 d~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
...-.++..+|+.+++..+|..+|+.-=-+.+...+.
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3345577789999999999999997633344444443
No 92
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=35.82 E-value=85 Score=20.04 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=34.3
Q ss_pred HHHHHHHHHhH----------------hhhHhhhcCCCccChhHHHHHhhh-cCCccchhHHHHHHHHH
Q 032777 23 LPASFSFLSCR----------------ASDKCQKEKRKTINGDDLLWAMAT-LGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 23 aseFI~ylTSe----------------And~c~~~kRKTI~~dDVL~AL~~-LgF~dyv~~Lk~~L~~y 74 (134)
-.+|+.++... +-...-.++...|+.+++..+|.. +|..-=-+.+...+..+
T Consensus 66 ~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 66 FDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHHHHHHHHTTCCHHHHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 56788777432 223344577889999999999999 78654344555555443
No 93
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=35.75 E-value=29 Score=23.60 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.5
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
+-..|...++.-+...|+++|+|.||-+-
T Consensus 87 ~l~~A~~~A~~~~~~~i~~ehLLlall~~ 115 (143)
T 1k6k_A 87 VLQRAVFHVQSSGRNEVTGANVLVAIFSE 115 (143)
T ss_dssp HHHHHHHHHHSSSCSCBCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 44678888888899999999999999653
No 94
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=35.67 E-value=57 Score=19.35 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=25.4
Q ss_pred HhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 37 ~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
..-.++.-.|+.+++..+|..+|+.-=.+.+...+.
T Consensus 22 ~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 22 LFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp HTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 344567788999999999999987643444444444
No 95
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A
Probab=35.56 E-value=83 Score=22.80 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=33.6
Q ss_pred HHHHHHHHHh-----HhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 23 LPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 23 aseFI~ylTS-----eAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
-.||+.++.. .+-...-.++.-+|+.+++..+|..+|..-=-+.++..+.
T Consensus 106 ~~EF~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~l~~ 160 (220)
T 3sjs_A 106 FYEFMAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHR 160 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSSTTEECHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5677777654 3334455578889999999999999987543334444443
No 96
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=35.27 E-value=59 Score=27.91 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.9
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+-..|..+|..+++..|+.+||.+|++.
T Consensus 347 llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 347 IVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4456788899999999999999999964
No 97
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=34.65 E-value=60 Score=20.85 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 22 SLPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
.-.+|+.++... +-...-.++.-.|+.+++..+|..+|..---+.+...+..
T Consensus 57 ~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~ 120 (143)
T 3j04_B 57 NFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYRE 120 (143)
T ss_dssp CHHHHHHHHHHTTTSSCCHHHHHHHHTTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCcHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356888877643 1122333677889999999999999866434445544443
No 98
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=34.53 E-value=52 Score=19.06 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=22.9
Q ss_pred hhhcCCCccChhHHHHHhhhcCCccchhHHHHHH
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L 71 (134)
.-.++.-.|+.+++..+|..+|+.--.+.+...+
T Consensus 16 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 16 FDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp HCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred hCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3456677899999999999998753333344333
No 99
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=34.53 E-value=62 Score=19.27 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=26.2
Q ss_pred hhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
.-.++...|+.+++..+|..+|+.-=.+.+...+..
T Consensus 32 ~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 67 (87)
T 1s6j_A 32 IDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA 67 (87)
T ss_dssp HCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 345677889999999999999986444455554443
No 100
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=34.02 E-value=79 Score=19.11 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=25.2
Q ss_pred hhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
.-.++.-.|+.+++..+|..+|+.-=.+.+...+.
T Consensus 29 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 29 FDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34567789999999999999998643444444443
No 101
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=33.94 E-value=20 Score=22.62 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=12.9
Q ss_pred hHHHHHhhhcCCcc
Q 032777 49 DDLLWAMATLGFED 62 (134)
Q Consensus 49 dDVL~AL~~LgF~d 62 (134)
+|++.||..|||..
T Consensus 18 ~ea~~AL~aLGY~~ 31 (62)
T 1ixs_A 18 EEAVMALAALGFKE 31 (62)
T ss_dssp HHHHHHHHHTTCCH
T ss_pred HHHHHHHHHcCCCH
Confidence 68999999999985
No 102
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=33.77 E-value=32 Score=25.25 Aligned_cols=28 Identities=11% Similarity=0.135 Sum_probs=24.3
Q ss_pred hHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 32 CRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 32 SeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
..|.+.|..-+...|.++|+|.||=+-+
T Consensus 34 ~~A~~~A~~~~h~~I~~EHLLlaLL~~~ 61 (171)
T 3zri_A 34 EQAASLCIERQHPEVTLEHYLDVLLDNP 61 (171)
T ss_dssp HHHHHHHHHHTCSEECHHHHHHHHTTCT
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 5688899999999999999999986543
No 103
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=33.44 E-value=86 Score=22.16 Aligned_cols=49 Identities=14% Similarity=0.011 Sum_probs=33.7
Q ss_pred hHHHHHHHHHh-----HhhhHhhhcCCCccChhHHHHHhhhc----CCccchhHHHHHH
Q 032777 22 SLPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATL----GFEDYIDPLKAYL 71 (134)
Q Consensus 22 caseFI~ylTS-----eAnd~c~~~kRKTI~~dDVL~AL~~L----gF~dyv~~Lk~~L 71 (134)
.-.||+.+++. .|-...- ++.-+|+.+++..+|..+ |+.-=-+.++..+
T Consensus 64 ~f~EF~~~~~~~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~ 121 (174)
T 2i7a_A 64 DQEEFARLWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVT 121 (174)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHH
Confidence 36688876543 4555666 778899999999999999 8753233344433
No 104
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=33.29 E-value=19 Score=23.89 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=18.3
Q ss_pred CccChhHHHHHhhhcCC--ccchhH
Q 032777 44 KTINGDDLLWAMATLGF--EDYIDP 66 (134)
Q Consensus 44 KTI~~dDVL~AL~~LgF--~dyv~~ 66 (134)
..=+++||..-|+.+|| +.|++.
T Consensus 18 ~~Wt~~dV~~WL~~~gl~~~~Y~~~ 42 (91)
T 1v85_A 18 DKWTTEEVVLWLEQLGPWASLYRDR 42 (91)
T ss_dssp GGCCHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45689999999999999 666543
No 105
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=33.21 E-value=49 Score=24.39 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=26.0
Q ss_pred HHHHHhHhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 27 I~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
|..+..+|.-.|...++.+|+.+|+-.|+++.-
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 334556677778888899999999999998764
No 106
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=33.17 E-value=98 Score=20.47 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=30.7
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L 71 (134)
-.+|+.++... +-...-.++.-.|+.+++..+|..+|..--.+.+...+
T Consensus 77 ~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~ 137 (166)
T 2mys_B 77 FTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMW 137 (166)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCcceeHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55777776543 12223346777899999999999988653333344443
No 107
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=33.16 E-value=1.1e+02 Score=20.39 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=35.8
Q ss_pred hHHHHHHHHHhH-----hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHH
Q 032777 22 SLPASFSFLSCR-----ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 22 caseFI~ylTSe-----And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~y 74 (134)
.-.||+.++... +-...-.++.-+|+.+++..+|..+|..--.+.+...+..+
T Consensus 58 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 115 (165)
T 1k94_A 58 GFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY 115 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 356777765442 33334457788999999999999999764445555555544
No 108
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Probab=33.01 E-value=1.1e+02 Score=20.68 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=34.7
Q ss_pred hHHHHHHHHHh-----HhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 22 SLPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTS-----eAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
.-.||+.++.. .+-...-.++..+|+.+++..+|..+|+.-=.+.++..+..
T Consensus 65 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 121 (173)
T 1alv_A 65 GFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRR 121 (173)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCSSBCTTTHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 36688877653 23344455778899999999999999876333444444443
No 109
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=32.97 E-value=32 Score=19.39 Aligned_cols=24 Identities=0% Similarity=-0.122 Sum_probs=18.2
Q ss_pred hhhcCCCccChhHHHHHhhhcCCc
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
.-.++...|+.+++..+|..+|..
T Consensus 9 ~D~d~~G~i~~~e~~~~l~~~~~~ 32 (66)
T 3li6_A 9 IDVNGDGAVSYEEVKAFVSKKRAI 32 (66)
T ss_dssp HCTTCSSSCCHHHHHHHHHHHHHH
T ss_pred HCCCCCCcccHHHHHHHHHHccCC
Confidence 344667789999999999888743
No 110
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=32.68 E-value=1e+02 Score=20.10 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=32.1
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
-.+|+.++... |-...-.++.-.|+.+++..+|..+|..-=-+.+...+.
T Consensus 61 ~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 122 (143)
T 2obh_A 61 FGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMID 122 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 55777765432 222233467788999999999999986533344555443
No 111
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=32.56 E-value=90 Score=19.34 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=26.1
Q ss_pred hHHHHHHHHHh---------HhhhHhhhcCCCccChhHHHHHhhhcC
Q 032777 22 SLPASFSFLSC---------RASDKCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 22 caseFI~ylTS---------eAnd~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
.-.||+.++.. .+-...-.++.-+|+.+++..+|..++
T Consensus 25 ~~~eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~ 71 (108)
T 1rro_A 25 EPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQ 71 (108)
T ss_dssp CHHHHHHHHSGGGSCHHHHHHHHHHHCTTCSSEECTHHHHTGGGGTC
T ss_pred CHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHh
Confidence 35577776642 222333447778899999999999994
No 112
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.26 E-value=38 Score=28.73 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=26.4
Q ss_pred HHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 27 I~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
|..|..+|.-.|.++++..|+.+|++.|++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5566778888888899999999999999875
No 113
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=31.83 E-value=28 Score=19.11 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=14.2
Q ss_pred cChhHHHHHhhhcCCc
Q 032777 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~ 61 (134)
++.++|..+++.+||.
T Consensus 47 ~~~~~i~~~i~~~G~~ 62 (64)
T 2xmm_A 47 LGEEQLRTAIASAGYE 62 (64)
T ss_dssp SCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 6789999999999985
No 114
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=31.76 E-value=22 Score=26.52 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=16.8
Q ss_pred ChhHHHHHhhhcCCccchh
Q 032777 47 NGDDLLWAMATLGFEDYID 65 (134)
Q Consensus 47 ~~dDVL~AL~~LgF~dyv~ 65 (134)
+.+.||..|+.+||.+|+.
T Consensus 108 ~~~~vle~Lk~~gl~~~Ir 126 (171)
T 2p2u_A 108 TKDMTLERLRQFGISEGIR 126 (171)
T ss_dssp CHHHHHHHHHHTTCCTTCC
T ss_pred CHHHHHHHHHHCCcHhhee
Confidence 4578999999999999984
No 115
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=31.71 E-value=80 Score=24.15 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=28.0
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHH
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL 67 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~L 67 (134)
+...|...|..+++.+|+.+||..|+..+..+.+.+.+
T Consensus 246 ~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l 283 (389)
T 1fnn_A 246 ILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVL 283 (389)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHH
Confidence 33455566677788999999999999998766554444
No 116
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=31.65 E-value=1.1e+02 Score=21.02 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhHh--------------hhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHH
Q 032777 22 SLPASFSFLSCRA--------------SDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 22 caseFI~ylTSeA--------------nd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L 71 (134)
.-.+|+.++.... -...-.++.-+|+.+++-.+|..+|..-=-+.+...+
T Consensus 64 ~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~ 127 (159)
T 3i5g_C 64 KLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIF 127 (159)
T ss_dssp CHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3678888765432 2333357778899999999999999764344454444
No 117
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=31.55 E-value=87 Score=18.85 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=21.5
Q ss_pred hhhcCCCccChhHHHHHhhhcCCccchhHHHHH
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFEDYIDPLKAY 70 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~ 70 (134)
.-.++.-.|+.+++..+|..+|..-=.+.+...
T Consensus 18 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l 50 (92)
T 2kn2_A 18 FDKDQNGYISASELRHVMINLGEKLTDEEVEQM 50 (92)
T ss_dssp HCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 344666788888888888888865333333333
No 118
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=31.48 E-value=1e+02 Score=20.75 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=20.1
Q ss_pred HhhhcCCCccChhHHHHHhhhcCCc
Q 032777 37 KCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 37 ~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
..-.++.-.|+.+++..+|..+|..
T Consensus 117 ~~D~d~~G~Is~~El~~~l~~~g~~ 141 (191)
T 1uhk_A 117 IVDKDQNGAITLDEWKAYTKAAGII 141 (191)
T ss_dssp HHCTTCSSEECHHHHHHHHHHHTSC
T ss_pred HhcCCCCCcCcHHHHHHHHHHhCCC
Confidence 3445677889999999999999864
No 119
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=31.25 E-value=52 Score=27.38 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=26.4
Q ss_pred HhHhhhHhhhcCCCccChhHHHHHhhhcCCc
Q 032777 31 SCRASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 31 TSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
-..|.+.|..-++..|.++|+|.||=.-+=+
T Consensus 14 l~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~ 44 (468)
T 3pxg_A 14 LALAQEEALRLGHNNIGTEHILLGLVREGEG 44 (468)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHhccCc
Confidence 3578899999999999999999999776533
No 120
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.78 E-value=42 Score=28.86 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 26 FI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
=|.-|..+|.-.|.+++|..|+.+|+..|++.
T Consensus 391 DI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 391 DIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 35567778888888999999999999999874
No 121
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=30.73 E-value=46 Score=22.61 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=23.4
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+-..|...+..-+...|+.+|+|.||-+
T Consensus 90 vl~~A~~~a~~~~~~~i~~ehlLlall~ 117 (148)
T 1khy_A 90 VLNLCDKLAQKRGDNFISSELFVLAALE 117 (148)
T ss_dssp HHHHHHHHHHHHTCSSBCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHc
Confidence 4467778888889999999999999873
No 122
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=30.18 E-value=35 Score=24.12 Aligned_cols=30 Identities=10% Similarity=-0.022 Sum_probs=26.7
Q ss_pred cChhHHHHHhhhcCCccchhHHHHHHHHHH
Q 032777 46 INGDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~dyv~~Lk~~L~~yr 75 (134)
-+.+.++.||..+|..+.++.|+..|.+--
T Consensus 64 ATv~~L~~AL~~i~~~diAe~Ie~~l~~~~ 93 (122)
T 3ezq_B 64 ATVAHLVGALRSCQMNLVADLVQEVQQARD 93 (122)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 478999999999999999999999888653
No 123
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=30.14 E-value=22 Score=29.26 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=25.6
Q ss_pred hhHHHHHhhhcCCccchhHHHHHHHHHH
Q 032777 48 GDDLLWAMATLGFEDYIDPLKAYLMRYR 75 (134)
Q Consensus 48 ~dDVL~AL~~LgF~dyv~~Lk~~L~~yr 75 (134)
=|..+.-|+.+|.++|++..+..+++|+
T Consensus 507 wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 507 WDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 5678899999999999999999999996
No 124
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=30.04 E-value=73 Score=19.64 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=21.7
Q ss_pred hhHhhhcCCCccChhHHHHHhhhcCCc
Q 032777 35 SDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 35 nd~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
-...-.++.-.|+.+++..+|..+|+.
T Consensus 33 F~~~D~d~~G~I~~~El~~~l~~~g~~ 59 (91)
T 2pmy_A 33 FAACDANRSGRLEREEFRALCTELRVR 59 (91)
T ss_dssp HHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCCCCcHHHHHHHHHHcCcC
Confidence 344456778899999999999999964
No 125
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=29.70 E-value=61 Score=19.42 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=22.0
Q ss_pred hhhcCCCccChhHHHHHhhhcCCccchhH
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFEDYIDP 66 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~dyv~~ 66 (134)
.-.++..+|+.+++..+|..+|+.-=.+.
T Consensus 23 ~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 51 (86)
T 1j7q_A 23 FDRNAENIAPVSDTMDMLTKLGQTYTKRE 51 (86)
T ss_dssp HSTTTTSCBCHHHHHHHHHHTSCCCSHHH
T ss_pred hCCCCCCcCcHHHHHHHHHHHcCCCCHHH
Confidence 34567789999999999999997633333
No 126
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.49 E-value=40 Score=28.57 Aligned_cols=33 Identities=6% Similarity=0.215 Sum_probs=27.5
Q ss_pred HHHHHHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 26 FI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
=|.-|..+|.-.|.+++++.|+.+|++.||+..
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 356677788888888999999999999998764
No 127
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=29.38 E-value=84 Score=18.67 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=18.1
Q ss_pred HhhhcCCCccChhHHHHHhhhcC
Q 032777 37 KCQKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 37 ~c~~~kRKTI~~dDVL~AL~~Lg 59 (134)
..-.++...|+.+++..+|..+|
T Consensus 19 ~~D~d~~G~i~~~el~~~l~~~g 41 (86)
T 2opo_A 19 RFDTNGDGKISSSELGDALKTLG 41 (86)
T ss_dssp HHCTTCSSEEEHHHHHHHHHTTT
T ss_pred HHCCCCCCCcCHHHHHHHHHHcC
Confidence 33456777899999999999888
No 128
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=29.27 E-value=28 Score=21.62 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=15.5
Q ss_pred ccChhHHHHHhhhcCCcc
Q 032777 45 TINGDDLLWAMATLGFED 62 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~d 62 (134)
.++..||+.+|+.+||..
T Consensus 4 p~~~~elik~L~~~G~~~ 21 (70)
T 1whz_A 4 PPRPEEVARKLRRLGFVE 21 (70)
T ss_dssp CCCHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHCCCEE
Confidence 367899999999999973
No 129
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=29.22 E-value=1.3e+02 Score=20.08 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=34.8
Q ss_pred hHHHHHHHHHhH-----hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHH
Q 032777 22 SLPASFSFLSCR-----ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 22 caseFI~ylTSe-----And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~y 74 (134)
.-.||+.++... +-...-.++.-+|+.+++..+|..+|..--.+.+...+..+
T Consensus 60 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 117 (167)
T 1gjy_A 60 GFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY 117 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 356787766442 23334457778999999999999998764344455444443
No 130
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=29.16 E-value=1.3e+02 Score=20.10 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=32.7
Q ss_pred HHHHHHHHHh-----HhhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 23 LPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 23 aseFI~ylTS-----eAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
-.||+.++.. .+-...-.++.-.|+.+++..+|..+|..--.+.+...+.
T Consensus 63 ~~ef~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 117 (172)
T 2znd_A 63 FSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIR 117 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5677776543 2333344577889999999999999986543344444433
No 131
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=29.09 E-value=30 Score=23.75 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=19.0
Q ss_pred ccChhHHHHHhhhc--CCccchhHH
Q 032777 45 TINGDDLLWAMATL--GFEDYIDPL 67 (134)
Q Consensus 45 TI~~dDVL~AL~~L--gF~dyv~~L 67 (134)
.=+++||..-|+.+ ||++|++..
T Consensus 25 ~Wt~~~V~~WL~~~~~gl~~Y~~~F 49 (106)
T 3bs5_A 25 LWTVSDVLKWYRRHCGEYTQYEQLF 49 (106)
T ss_dssp GCCHHHHHHHHHHHSGGGGGGHHHH
T ss_pred cCCHHHHHHHHHHHHcchHHHHHHH
Confidence 46899999999999 999887543
No 132
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.05 E-value=47 Score=28.07 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 26 FI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
=|.-|-.+|.-.|.+++|..|+.+|+..||+.
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 35667778888888999999999999999875
No 133
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=28.91 E-value=92 Score=21.11 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=16.9
Q ss_pred hhhcCCCccChhHHHHHhhhcCCc
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
.-.++.-.|+.+++..+|..+|..
T Consensus 122 ~D~d~~G~I~~~El~~~l~~~g~~ 145 (195)
T 1qv0_A 122 FDKDGSGTITLDEWKAYGKISGIS 145 (195)
T ss_dssp TC----CEECHHHHHHHHHHHSSC
T ss_pred hcCCCCCcCcHHHHHHHHHHhCCC
Confidence 344777889999999999999864
No 134
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=28.43 E-value=92 Score=20.31 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=9.7
Q ss_pred cCCCccChhHHHHHhhhcCC
Q 032777 41 EKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 41 ~kRKTI~~dDVL~AL~~LgF 60 (134)
++..+|+.+++..+|+.+|+
T Consensus 22 d~~G~i~~~el~~~l~~~g~ 41 (148)
T 1exr_A 22 DGDGTITTKELGTVMRSLGQ 41 (148)
T ss_dssp TCSSEECHHHHHHHHHHHTC
T ss_pred CCCCcCcHHHHHHHHHHcCC
Confidence 34444555555555554444
No 135
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.41 E-value=43 Score=29.00 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=27.0
Q ss_pred HHHHHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 27 I~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
|.-|..+|.-.|.+++|+.|+-+|++.|++..
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 55667788888888999999999999998764
No 136
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=28.00 E-value=1e+02 Score=20.40 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=35.6
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
-.+|+.+++.. |-...-.++.-+|+.+++..+|..+|..---+.+...+..
T Consensus 65 ~~ef~~~~~~~~~~~~~~~~l~~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 65 FTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHHHHTTTTTTTHHHHHHHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 56777766543 3334445788899999999999999987655566655543
No 137
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=27.93 E-value=1.1e+02 Score=20.03 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHH
Q 032777 22 SLPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 22 caseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L 71 (134)
.-.+|+.++... +-...-.++.-+|+.+++..+|..+|..-=.+.+...+
T Consensus 68 ~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~ 129 (156)
T 1wdc_B 68 NFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTF 129 (156)
T ss_dssp CHHHHHHHHHHHTCSCCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 356788777643 12223346777899999999999988643233344433
No 138
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=27.84 E-value=58 Score=18.43 Aligned_cols=31 Identities=32% Similarity=0.289 Sum_probs=21.6
Q ss_pred hhcCCCccChhHHHHHhhhcCCccchhHHHH
Q 032777 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKA 69 (134)
Q Consensus 39 ~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~ 69 (134)
-.++...|+.+++..+|..+|..-=.+.+..
T Consensus 16 D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~ 46 (71)
T 2b1u_A 16 DQDGDGHITVDELRRAMAGLGQPLPQEELDA 46 (71)
T ss_dssp CCSSSSEEEHHHHHHHGGGTTCSSCHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 3466778999999999999986533333333
No 139
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=27.55 E-value=57 Score=24.37 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhHhhhH--hhhc----CCCccChhHHHHHhhhcC-----CccchhHHHHHHHHHHH
Q 032777 22 SLPASFSFLSCRASDK--CQKE----KRKTINGDDLLWAMATLG-----FEDYIDPLKAYLMRYRE 76 (134)
Q Consensus 22 caseFI~ylTSeAnd~--c~~~----kRKTI~~dDVL~AL~~Lg-----F~dyv~~Lk~~L~~yre 76 (134)
.+-+||.|++|...+. ++.. -++.+..+..+..+.++. ++.+.+.....+++|.+
T Consensus 253 ~A~~fi~fl~s~e~q~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 318 (323)
T 1y9u_A 253 NAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGPLKVDTLPVAEIAKYRKQASELVDK 318 (323)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHTTCEESSTTCCCCHHHHHTCCCCBCCSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhccccccCCCCCCCCccCCCccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5889999999865433 3222 255566566666665442 33344445555555554
No 140
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=27.48 E-value=1.5e+02 Score=20.42 Aligned_cols=39 Identities=8% Similarity=0.132 Sum_probs=28.0
Q ss_pred HHHHHHHHHh-----HhhhHhhhcCCCccChhHHHHHhhhcCCc
Q 032777 23 LPASFSFLSC-----RASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 23 aseFI~ylTS-----eAnd~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
-.||+.++.. .+-...-.++.-+|+.+++..+|..+|+.
T Consensus 82 ~~EF~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 125 (191)
T 1y1x_A 82 FDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQ 125 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCC
Confidence 5677776643 23334455777899999999999998864
No 141
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=27.07 E-value=41 Score=21.24 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.2
Q ss_pred cChhHHHHHhhhc--CCccchhHHH
Q 032777 46 INGDDLLWAMATL--GFEDYIDPLK 68 (134)
Q Consensus 46 I~~dDVL~AL~~L--gF~dyv~~Lk 68 (134)
=+++||..-|+.+ |++.|++...
T Consensus 7 Ws~~~V~~WL~~l~~gl~~Y~~~F~ 31 (80)
T 3bs5_B 7 WSPSQVVDWMKGLDDCLQQYIKNFE 31 (80)
T ss_dssp CCHHHHHHHHHTSCGGGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4689999999988 4777775543
No 142
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=26.94 E-value=37 Score=19.13 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.6
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.++|+.+++.+||.
T Consensus 51 ~~~~~~i~~~i~~~G~~ 67 (72)
T 1osd_A 51 KTSVQKLTKATADAGYP 67 (72)
T ss_dssp TCCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHhcCCC
Confidence 36778999999999996
No 143
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=26.59 E-value=1.1e+02 Score=26.18 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=37.6
Q ss_pred hHHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHHH
Q 032777 22 SLPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 22 caseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~y 74 (134)
.-.||+.++... +-...-.++.-+|+.+++..+|+.+|+.-=-+.++..+..|
T Consensus 366 sfeEFl~ll~~~~~~~~~~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 366 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp EHHHHHHHHHC------CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhccccchhhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 367888877542 34445567888999999999999999865455565555544
No 144
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Probab=26.55 E-value=72 Score=20.67 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=27.7
Q ss_pred HHHHHHHHHhHh--------------hhHhhhcCCCccChhHHHHHhhhcCCc
Q 032777 23 LPASFSFLSCRA--------------SDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 23 aseFI~ylTSeA--------------nd~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
-.||+.++.... -...-.++.-.|+.+++..+|..+|..
T Consensus 67 ~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~ 119 (151)
T 1w7j_B 67 FETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEK 119 (151)
T ss_dssp HHHHHHHHHHHCC--------CCHHHHHTTCTTSSSEEEHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhccCCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCC
Confidence 567887776542 222334667789999999999999865
No 145
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=26.22 E-value=32 Score=19.49 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=15.0
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.++|..+++.+||+
T Consensus 45 ~~~~~~i~~~i~~~Gy~ 61 (66)
T 2roe_A 45 TADPKALVQAVEEEGYK 61 (66)
T ss_dssp CCCHHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46889999999999996
No 146
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=26.22 E-value=34 Score=19.27 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=14.3
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.++|+.+++.+||+
T Consensus 53 ~~~~~~i~~~i~~~G~~ 69 (71)
T 2l3m_A 53 VVTLKDIVAVIEDQGYD 69 (71)
T ss_dssp TSCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 36778899999999985
No 147
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=25.98 E-value=57 Score=19.22 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=23.1
Q ss_pred hhcCCCccChhHHHHHhhhcC-CccchhHHHHHHH
Q 032777 39 QKEKRKTINGDDLLWAMATLG-FEDYIDPLKAYLM 72 (134)
Q Consensus 39 ~~~kRKTI~~dDVL~AL~~Lg-F~dyv~~Lk~~L~ 72 (134)
-.++...|+.+++..+|..+| +.--.+.+...+.
T Consensus 18 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 52 (81)
T 1c7v_A 18 DANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMK 52 (81)
T ss_dssp SCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 345567899999999999998 5533444444443
No 148
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=25.81 E-value=37 Score=18.80 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=14.6
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.+++..+++.+||+
T Consensus 48 ~~~~~~i~~~i~~~G~~ 64 (68)
T 1cpz_A 48 NVQATEICQAINELGYQ 64 (68)
T ss_dssp TCCHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 36788999999999996
No 149
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=25.81 E-value=36 Score=20.04 Aligned_cols=16 Identities=25% Similarity=0.169 Sum_probs=14.7
Q ss_pred cChhHHHHHhhhcCCc
Q 032777 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~ 61 (134)
++.++|+.+++.+||.
T Consensus 51 ~~~~~i~~~i~~~Gy~ 66 (73)
T 1cc8_A 51 LPYDFILEKIKKTGKE 66 (73)
T ss_dssp SCHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHhCCC
Confidence 6789999999999997
No 150
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=25.62 E-value=30 Score=19.37 Aligned_cols=16 Identities=19% Similarity=0.161 Sum_probs=13.6
Q ss_pred cChhHHHHHhhhcCCc
Q 032777 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~ 61 (134)
++.++|+.+++.+||.
T Consensus 51 ~~~~~i~~~i~~~G~~ 66 (71)
T 2xmw_A 51 TTPQILTDAVERAGYH 66 (71)
T ss_dssp -CHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHcCCC
Confidence 6788999999999996
No 151
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=25.62 E-value=1.3e+02 Score=19.06 Aligned_cols=21 Identities=38% Similarity=0.446 Sum_probs=12.1
Q ss_pred cCCCccChhHHHHHhhhcCCc
Q 032777 41 EKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 41 ~kRKTI~~dDVL~AL~~LgF~ 61 (134)
++..+|+.+++..+|..+|+.
T Consensus 23 d~~G~i~~~el~~~l~~~~~~ 43 (153)
T 3ox6_A 23 DKDGYINCRDLGNCMRTMGYM 43 (153)
T ss_dssp HCSSSCCHHHHHHHHHHTTCC
T ss_pred CCCCcCcHHHHHHHHHHcCCC
Confidence 344556666666666666554
No 152
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=25.20 E-value=67 Score=29.99 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=24.3
Q ss_pred HHHHHhH----hhhHhhhcCCCccChhHHHHHhhh
Q 032777 27 FSFLSCR----ASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 27 I~ylTSe----And~c~~~kRKTI~~dDVL~AL~~ 57 (134)
+-|||++ |-..|+..+++.|++.||..|+..
T Consensus 134 leyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 134 LEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 5677776 445667788999999999988854
No 153
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=25.17 E-value=34 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=22.1
Q ss_pred hhHHHHHhhhcCCccchhHHHHHHHHH
Q 032777 48 GDDLLWAMATLGFEDYIDPLKAYLMRY 74 (134)
Q Consensus 48 ~dDVL~AL~~LgF~dyv~~Lk~~L~~y 74 (134)
-|+.+.-|+.+|.+++++..+..+++|
T Consensus 463 ~d~~v~~l~~~G~d~~~~~~q~~ydr~ 489 (490)
T 3a09_A 463 WNDYQQQLKNRGFYQVMIVMQKAYDRQ 489 (490)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHhccc
Confidence 355678888899999998888888877
No 154
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=25.05 E-value=37 Score=26.89 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=24.2
Q ss_pred HHHHHHHHhHhhhHhhhcCC------------------CccChhHHHHHhhhc
Q 032777 24 PASFSFLSCRASDKCQKEKR------------------KTINGDDLLWAMATL 58 (134)
Q Consensus 24 seFI~ylTSeAnd~c~~~kR------------------KTI~~dDVL~AL~~L 58 (134)
..|-.=|+-+=-++|..... -.|++|||+.|++.|
T Consensus 89 gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L 141 (233)
T 1u5t_A 89 NDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDML 141 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHh
Confidence 45555555666666665432 489999999998876
No 155
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.90 E-value=61 Score=23.79 Aligned_cols=30 Identities=27% Similarity=0.179 Sum_probs=22.5
Q ss_pred HHHHHhHhhhHhhhcCCCccChhHHHHHhh
Q 032777 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 27 I~ylTSeAnd~c~~~kRKTI~~dDVL~AL~ 56 (134)
|.-+..+|...|..+++.+|+.+|+.+|++
T Consensus 225 l~~~~~~a~~~a~~~~~~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 225 LENLLNEAALLAAREGRRKITMKDLEEAAS 254 (254)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCcCHHHHHHHhC
Confidence 334445677777788888999999998863
No 156
>1o7b_T Tumor necrosis factor-inducible protein TSG-6; hyaluronan-binding domain, carbohydrate-binding domain, LINK module, cell adhesion, glycoprotein; NMR {Homo sapiens} SCOP: d.169.1.4 PDB: 1o7c_T 2pf5_A*
Probab=24.88 E-value=55 Score=22.53 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=26.8
Q ss_pred hHhhhHhhhcCCCccChhHHHHHhhhcCCc
Q 032777 32 CRASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 32 SeAnd~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
.+|.+.|+..+-.--+.++|-.|-+ .||+
T Consensus 17 ~eA~~aC~~~ga~LAs~~QL~~A~~-~G~~ 45 (98)
T 1o7b_T 17 AEAKAVCEFEGGHLATYKQLEAARK-IGFH 45 (98)
T ss_dssp HHHHHHHHHSSCEECCHHHHHHHHT-TTCC
T ss_pred HHHHHHHHhcCCccCCHHHHHHHHH-cCcc
Confidence 7899999999999999999999977 9997
No 157
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=24.88 E-value=83 Score=20.17 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=20.4
Q ss_pred cChhHHHHHhhhcCCccchhHHHHHHHHHHHHh
Q 032777 46 INGDDLLWAMATLGFEDYIDPLKAYLMRYREME 78 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~dyv~~Lk~~L~~yre~~ 78 (134)
-+|.-|+..|..-|.. .+.++.+|++||-..
T Consensus 30 AtPk~Il~~M~v~gLT--~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 30 AVPKKILDLMNVDKLT--RENVASHLQKFRVAL 60 (64)
T ss_dssp CCHHHHHHHHCCTTCC--HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHcCCCCCC--HHHHHHHHHHHHHHH
Confidence 4555566665543332 678899999999753
No 158
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=24.55 E-value=92 Score=20.38 Aligned_cols=19 Identities=42% Similarity=0.524 Sum_probs=8.9
Q ss_pred CCCccChhHHHHHhhhcCC
Q 032777 42 KRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 42 kRKTI~~dDVL~AL~~LgF 60 (134)
+--+|+.+++..+|..+|+
T Consensus 19 ~~G~I~~~el~~~l~~~g~ 37 (143)
T 2obh_A 19 GTGTIDVKELKVAMRALGF 37 (143)
T ss_dssp CCSEEEGGGHHHHHHHTTC
T ss_pred CCCcCcHHHHHHHHHHcCC
Confidence 3444444444444444444
No 159
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=24.45 E-value=96 Score=17.99 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=14.8
Q ss_pred hhcCCCccChhHHHHHhhhcC
Q 032777 39 QKEKRKTINGDDLLWAMATLG 59 (134)
Q Consensus 39 ~~~kRKTI~~dDVL~AL~~Lg 59 (134)
-.++...|+.+++..+|..+|
T Consensus 13 D~~~~G~i~~~el~~~l~~~g 33 (78)
T 1k9u_A 13 DTNGDGKISLSELTDALRTLG 33 (78)
T ss_dssp CTTCSSEECHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHhC
Confidence 345566777777777777776
No 160
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=24.24 E-value=76 Score=22.23 Aligned_cols=47 Identities=13% Similarity=-0.029 Sum_probs=29.7
Q ss_pred HHHHHHHHHhH------------hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHH
Q 032777 23 LPASFSFLSCR------------ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAY 70 (134)
Q Consensus 23 aseFI~ylTSe------------And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~ 70 (134)
-.+|+.++... +-...-.++.-+|+.+++..+| .+|..---+.+...
T Consensus 108 ~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~~~~~~~~~l 166 (196)
T 3dtp_E 108 FTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEKFSQDEVDQA 166 (196)
T ss_dssp HHHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCCCCHHHHHHH
Confidence 56788777542 2223334677889999999999 88865333334333
No 161
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=24.24 E-value=1.6e+02 Score=20.37 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhH-----hhhHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 22 SLPASFSFLSCR-----ASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 22 caseFI~ylTSe-----And~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
.-.||+.++... +-...-.++.-+|+.+++..+|..+|..-=.+.++..+..
T Consensus 91 ~~~eF~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~ 147 (198)
T 1juo_A 91 GFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKR 147 (198)
T ss_dssp EHHHHHHHHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 356787776542 2333445677899999999999999875333444444443
No 162
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=24.19 E-value=40 Score=18.30 Aligned_cols=17 Identities=18% Similarity=0.396 Sum_probs=14.2
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.+++..+++.+||.
T Consensus 50 ~~~~~~i~~~i~~~G~~ 66 (69)
T 2qif_A 50 KVSVKDIADAIEDQGYD 66 (69)
T ss_dssp TCCHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46778899999999985
No 163
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=24.08 E-value=28 Score=25.40 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=12.7
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhhc
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~L 58 (134)
+..+|...|..+++.+|+.+|+..|+++.
T Consensus 221 l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 221 ICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 44455555555666777777777666654
No 164
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=23.90 E-value=62 Score=23.70 Aligned_cols=29 Identities=14% Similarity=0.025 Sum_probs=24.4
Q ss_pred HHhHhhhHhh-hcCCCccChhHHHHHhhhc
Q 032777 30 LSCRASDKCQ-KEKRKTINGDDLLWAMATL 58 (134)
Q Consensus 30 lTSeAnd~c~-~~kRKTI~~dDVL~AL~~L 58 (134)
+-..|...++ +-+...|+.+|||-||-.-
T Consensus 106 vL~~A~~~A~l~~gd~~I~teHLLLALl~~ 135 (171)
T 3zri_A 106 LLQEAWLLSSTELEQAELRSGAIFLAALTR 135 (171)
T ss_dssp HHHHHHHHHHTTTCCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEcHHHHHHHHHhC
Confidence 4467888888 8999999999999998544
No 165
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=23.81 E-value=44 Score=25.41 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=28.1
Q ss_pred HHhHhhhHhhhcCCCccChhHHHHHhhhcCCccchhHH
Q 032777 30 LSCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPL 67 (134)
Q Consensus 30 lTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~L 67 (134)
+...|...+..+++.+|+.+||-.|++++..+.+.+.+
T Consensus 244 ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~ 281 (386)
T 2qby_A 244 LLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDII 281 (386)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHH
Confidence 44566667777888999999999999988655444433
No 166
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=23.81 E-value=35 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=14.1
Q ss_pred cChhHHHHHhhhcCCc
Q 032777 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~ 61 (134)
++.++|+.+++.+||.
T Consensus 52 ~~~~~i~~~i~~~G~~ 67 (72)
T 1aw0_A 52 TSPETLRGAIEDMGFD 67 (72)
T ss_dssp CCHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHCCCC
Confidence 6778999999999996
No 167
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=23.78 E-value=1.3e+02 Score=19.06 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=17.3
Q ss_pred cCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 41 EKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 41 ~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
++-.+|+.+++..+|..+|+.--.+.+...+..
T Consensus 20 ~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 52 (149)
T 2mys_C 20 TGDAKITASQVGDIARALGQNPTNAEINKILGN 52 (149)
T ss_pred CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 344556666666666666655333344443333
No 168
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=23.57 E-value=46 Score=19.08 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.7
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.++|+.+++.+||.
T Consensus 50 ~~~~~~i~~~i~~~Gy~ 66 (75)
T 3cjk_B 50 LQTPKTLQEAIDDMGFD 66 (75)
T ss_dssp TCCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHcCCc
Confidence 36778999999999996
No 169
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=23.38 E-value=1.4e+02 Score=19.21 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=14.3
Q ss_pred hcCCCccChhHHHHHhhhcCCc
Q 032777 40 KEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 40 ~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
.++.-+|+.+++..+|..+|+.
T Consensus 34 ~~~~G~i~~~e~~~~l~~~~~~ 55 (161)
T 3fwb_A 34 MNNDGFLDYHELKVAMKALGFE 55 (161)
T ss_dssp TTSSSEECHHHHHHHHHHTTCC
T ss_pred CCCCCcCcHHHHHHHHHHcCCC
Confidence 3455667777777777776654
No 170
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.35 E-value=72 Score=17.97 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=16.3
Q ss_pred hhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 48 GDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 48 ~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
.++.+.-|.++||+. +.....|..
T Consensus 4 ~e~~i~~L~~MGF~~--~~a~~AL~~ 27 (43)
T 2g3q_A 4 KSLAVEELSGMGFTE--EEAHNALEK 27 (43)
T ss_dssp HHHHHHHHHTTTSCH--HHHHHHHHH
T ss_pred CHHHHHHHHHcCCCH--HHHHHHHHH
Confidence 466788899999985 444445544
No 171
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=23.01 E-value=1e+02 Score=19.40 Aligned_cols=37 Identities=16% Similarity=0.079 Sum_probs=26.5
Q ss_pred HhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHHH
Q 032777 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLMR 73 (134)
Q Consensus 37 ~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~~ 73 (134)
..-.++..+|+.+++..+|..+|+.-=.+.+...+..
T Consensus 40 ~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~ 76 (107)
T 2d58_A 40 EFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGE 76 (107)
T ss_dssp TSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3445777899999999999999976444455544443
No 172
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=22.85 E-value=32 Score=28.23 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=25.3
Q ss_pred hhHHHHHhhhcCCccchhHHHHHHHHHHHH
Q 032777 48 GDDLLWAMATLGFEDYIDPLKAYLMRYREM 77 (134)
Q Consensus 48 ~dDVL~AL~~LgF~dyv~~Lk~~L~~yre~ 77 (134)
=+..+..|+.+|.+++++..+..+++|++.
T Consensus 463 ~d~~v~~l~~~G~d~~~~~~q~~~d~~~~~ 492 (502)
T 3vlv_A 463 WNDYQQQLKNRGFYQVMIVMQKAYDRQYGG 492 (502)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHCChHHHHHHHHHHHHHHHhh
Confidence 466789999999999999999999999754
No 173
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=22.82 E-value=1.4e+02 Score=19.17 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=20.2
Q ss_pred hcC-CCccChhHHHHHhhhcCCccchhHHHH
Q 032777 40 KEK-RKTINGDDLLWAMATLGFEDYIDPLKA 69 (134)
Q Consensus 40 ~~k-RKTI~~dDVL~AL~~LgF~dyv~~Lk~ 69 (134)
.++ --+|+.+++..+|..+|+.---+.+..
T Consensus 25 ~d~~~G~i~~~el~~~l~~~g~~~~~~~~~~ 55 (146)
T 2qac_A 25 EKSSGGKISIDNASYNARKLGLAPSSIDEKK 55 (146)
T ss_dssp HHCBTTBEEHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ccCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Confidence 345 668888888888888887643333433
No 174
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=22.81 E-value=1.3e+02 Score=25.71 Aligned_cols=52 Identities=6% Similarity=-0.029 Sum_probs=37.0
Q ss_pred HHHhcCCCceeccch---hHHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCc
Q 032777 7 MLRILYRNVSLSSSA---SLPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 7 ik~~LP~n~kISKDA---caseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
+-+.+-....+-+|. .+.-++..+..||-..+++++ +++++|..+|+.+||.
T Consensus 218 l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~G---a~~e~ID~a~~~~G~p 272 (460)
T 3k6j_A 218 ACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYG---YLPHQIDKIITNFGFL 272 (460)
T ss_dssp HHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSC---CCHHHHHHHHHHHTBS
T ss_pred HHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHcCCC
Confidence 344555555566675 244444455689999987777 8999999999988885
No 175
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=22.80 E-value=58 Score=24.81 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHhHhhhHhhhcCCCccChhHHHHHhhhcCCc
Q 032777 29 FLSCRASDKCQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 29 ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
-+-..|...|..+++.+|+.+||-.|++.+..+
T Consensus 247 ~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~ 279 (387)
T 2v1u_A 247 DLLRVAGEIAERRREERVRREHVYSARAEIERD 279 (387)
T ss_dssp HHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhc
Confidence 344556667777888999999999999887443
No 176
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=22.60 E-value=1.4e+02 Score=19.34 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhHhh-------------hHhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 22 SLPASFSFLSCRAS-------------DKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 22 caseFI~ylTSeAn-------------d~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
.-.||+.++..... ...-.++.-+|+.+++..+|..+|..-=.+.+...+.
T Consensus 64 ~~~eF~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 127 (156)
T 1wdc_C 64 PFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127 (156)
T ss_dssp CHHHHHHHHHHHTTSCCCCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred eHHHHHHHHHHHhhccCChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 46688887765432 2223366778999999999999986532334444443
No 177
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=22.42 E-value=42 Score=18.82 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=14.2
Q ss_pred cChhHHHHHhhhcCCc
Q 032777 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~ 61 (134)
++.++|+.+++.+||.
T Consensus 48 ~~~~~i~~~i~~~Gy~ 63 (69)
T 2kt2_A 48 TSPDALTAAVAGLGYK 63 (69)
T ss_dssp SCHHHHHHHHHTTTSE
T ss_pred CCHHHHHHHHHHCCCc
Confidence 4788999999999996
No 178
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=22.38 E-value=44 Score=18.76 Aligned_cols=17 Identities=18% Similarity=0.435 Sum_probs=14.7
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.++|..+++.+||.
T Consensus 49 ~~~~~~i~~~i~~~G~~ 65 (72)
T 1fvq_A 49 EVTADSIKEIIEDCGFD 65 (72)
T ss_dssp TSCHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHCCCc
Confidence 46788999999999996
No 179
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.18 E-value=49 Score=21.11 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=17.2
Q ss_pred cChhHHHHHhhhc--CCccchhHH
Q 032777 46 INGDDLLWAMATL--GFEDYIDPL 67 (134)
Q Consensus 46 I~~dDVL~AL~~L--gF~dyv~~L 67 (134)
=++++|..-|+.+ |++.|++..
T Consensus 11 Wt~~~V~~WL~~l~~gl~~Y~~~F 34 (83)
T 2ean_A 11 WSPSQVVDWMKGLDDCLQQYIKNF 34 (83)
T ss_dssp CCTTHHHHHHTTSCGGGTTTHHHH
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHH
Confidence 4789999999988 477877654
No 180
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=21.94 E-value=1.2e+02 Score=20.53 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=23.6
Q ss_pred hhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 39 QKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 39 ~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
-.++..+|+.+++..+|..+|+.---+.+...+.
T Consensus 60 D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~ 93 (150)
T 2jjz_A 60 DLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMIS 93 (150)
T ss_dssp CCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3466778999999999999987633344444443
No 181
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=21.70 E-value=41 Score=19.96 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=13.9
Q ss_pred ChhHHHHHhhhcCCc
Q 032777 47 NGDDLLWAMATLGFE 61 (134)
Q Consensus 47 ~~dDVL~AL~~LgF~ 61 (134)
+.++|+.+++.+||+
T Consensus 50 ~~~~i~~~i~~~Gy~ 64 (73)
T 3fry_A 50 DVDKYIKAVEAAGYQ 64 (73)
T ss_dssp GHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHcCCc
Confidence 788999999999997
No 182
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=21.66 E-value=1.2e+02 Score=20.49 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhHhhhHhh---------hcCCCccChh-------HHHHHhhhcCCc-cchhHHHHHHHHHHHHhcc
Q 032777 22 SLPASFSFLSCRASDKCQ---------KEKRKTINGD-------DLLWAMATLGFE-DYIDPLKAYLMRYREMEGD 80 (134)
Q Consensus 22 caseFI~ylTSeAnd~c~---------~~kRKTI~~d-------DVL~AL~~LgF~-dyv~~Lk~~L~~yre~~~~ 80 (134)
....|+..+..--..+.. ....-.|+.+ ++.+||+++|++ +..+.+..+++..+..-..
T Consensus 47 ~l~~Fl~~~~GGp~~Y~~~~G~p~l~~~H~~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~~~~a~~m~~ 122 (128)
T 2bkm_A 47 KQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMVN 122 (128)
T ss_dssp HHHHHHHHHTTSCCHHHHHHCCCCHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCccccccCCccHHHhhcCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 356677666655445532 2233458877 678899999986 5777777777777765544
No 183
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=21.58 E-value=75 Score=23.82 Aligned_cols=30 Identities=27% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHhHhhhHhhhcCCCccChhHHHHHhh
Q 032777 27 FSFLSCRASDKCQKEKRKTINGDDLLWAMA 56 (134)
Q Consensus 27 I~ylTSeAnd~c~~~kRKTI~~dDVL~AL~ 56 (134)
|.-+..+|...|..+++.+|+.+|+..|++
T Consensus 249 l~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 249 LENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 333445666777778888999999988863
No 184
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=21.46 E-value=47 Score=27.20 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=17.5
Q ss_pred CCccChhHHHHHhhhcCCccc
Q 032777 43 RKTINGDDLLWAMATLGFEDY 63 (134)
Q Consensus 43 RKTI~~dDVL~AL~~LgF~dy 63 (134)
..-|+.+||+.+|+.||+-.|
T Consensus 221 ~T~i~~~Dii~tL~~l~~l~~ 241 (280)
T 2ou2_A 221 ITSIKKEDVISTLQYLNLINY 241 (280)
T ss_dssp HHCBCHHHHHHHHHHTTCCCB
T ss_pred HhCCCHHHHHHHHHHCCcEEE
Confidence 344899999999999999754
No 185
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=21.43 E-value=74 Score=18.23 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=17.3
Q ss_pred hhcCC-CccChhHHHHHhhhcCCc
Q 032777 39 QKEKR-KTINGDDLLWAMATLGFE 61 (134)
Q Consensus 39 ~~~kR-KTI~~dDVL~AL~~LgF~ 61 (134)
-.++. ..|+.+++..+|..+|..
T Consensus 16 D~d~~~G~i~~~el~~~l~~~g~~ 39 (76)
T 1qx2_A 16 AKEGDPNQISKEELKLVMQTLGPS 39 (76)
T ss_dssp TSSSCTTSEEHHHHHHHHHHHGGG
T ss_pred ccCCCcCeECHHHHHHHHHHhCCC
Confidence 34555 679999999999888754
No 186
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=21.42 E-value=52 Score=21.60 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=22.6
Q ss_pred cChhHHHHHhhhcCCccchhHHHHHH
Q 032777 46 INGDDLLWAMATLGFEDYIDPLKAYL 71 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~dyv~~Lk~~L 71 (134)
=+.+.++.||..+|..+.++.|+..+
T Consensus 72 At~~~L~~AL~~~~~~~iae~i~~~~ 97 (99)
T 1fad_A 72 ASVAGLVKALRTCRLNLVADLVEEAQ 97 (99)
T ss_dssp GSHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 36899999999999999998887665
No 187
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=21.39 E-value=48 Score=22.08 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhHhhhH-----hhhcCCCccChhH-------HHHHhhhcCCc-cchhHHHHHHHHHHH
Q 032777 22 SLPASFSFLSCRASDK-----CQKEKRKTINGDD-------LLWAMATLGFE-DYIDPLKAYLMRYRE 76 (134)
Q Consensus 22 caseFI~ylTSeAnd~-----c~~~kRKTI~~dD-------VL~AL~~LgF~-dyv~~Lk~~L~~yre 76 (134)
....|+..+..-...+ ......-.|+++| +.+||+++|++ +..+.+..+++..+.
T Consensus 44 ~l~~fl~~~~gGp~~Y~g~~m~~~H~~~~I~~~~f~~wl~~~~~al~~~~~~~~~~~~~~~~~~~~a~ 111 (116)
T 1dlw_A 44 KTAAFLCAALGGPNAWTGRNLKEVHANMGVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRG 111 (116)
T ss_dssp HHHHHHHHHTTCSSCCCSCCHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCCccCCCcCHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHH
Confidence 3556666555433322 2233344577654 78899999984 678888887776654
No 188
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=21.27 E-value=48 Score=19.29 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.7
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.++|..+++.+||.
T Consensus 56 ~~~~~~i~~~i~~~Gy~ 72 (79)
T 1kvi_A 56 LQTPKTLQEAIDDMGFD 72 (79)
T ss_dssp TCCHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHCCCc
Confidence 46778999999999996
No 189
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=21.14 E-value=1.7e+02 Score=19.21 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=12.2
Q ss_pred cCCCccChhHHHHHhhhcCCc
Q 032777 41 EKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 41 ~kRKTI~~dDVL~AL~~LgF~ 61 (134)
++--+|+.+++..+|..+|+.
T Consensus 40 d~~G~i~~~el~~~l~~~~~~ 60 (169)
T 3qrx_A 40 DGSGTIDAKELKVAMRALGFE 60 (169)
T ss_dssp TCCSEECHHHHHHHHHHTSCC
T ss_pred CCCCcCcHHHHHHHHHHcCCC
Confidence 444556666666666666554
No 190
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=21.10 E-value=48 Score=18.17 Aligned_cols=16 Identities=25% Similarity=0.132 Sum_probs=13.7
Q ss_pred cChhHHHHHhhhcCCc
Q 032777 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~ 61 (134)
++.++|..+++.+||.
T Consensus 49 ~~~~~i~~~i~~~G~~ 64 (66)
T 1yg0_A 49 ATQDLIKEALLDAGQE 64 (66)
T ss_dssp CCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 3778999999999985
No 191
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=20.82 E-value=78 Score=23.85 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhHhhhH--hhhcC----CCccChhHHHHHhhhc-----CCccchhHHHHHHHHHHH
Q 032777 22 SLPASFSFLSCRASDK--CQKEK----RKTINGDDLLWAMATL-----GFEDYIDPLKAYLMRYRE 76 (134)
Q Consensus 22 caseFI~ylTSeAnd~--c~~~k----RKTI~~dDVL~AL~~L-----gF~dyv~~Lk~~L~~yre 76 (134)
.+-+||.|+++.-... ++..+ ++.+..++-+..+.++ +++.+.+.....+++|.+
T Consensus 277 aA~~fi~~l~s~e~q~~~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 342 (346)
T 2voz_A 277 AAIAFLEYLASDDAQRYFAEGNNEYPVIPGVPIDPVLAAHGQLKGDPLNVSNLGRYQPDSARLMNE 342 (346)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHTTCEESSTTSCCCHHHHTTCCCCBCCSCTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhccCcccCcCCCCCCcccCCccccCCCCCCHHHHHHhHHHHHHHHHH
Confidence 5889999999864432 33322 4444444545555433 233344445555555554
No 192
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=20.64 E-value=1.1e+02 Score=20.38 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhHhhhHhh---------hcCCCccChhH-------HHHHhhhcCCc-cchhHHHHHHHHHHHH
Q 032777 22 SLPASFSFLSCRASDKCQ---------KEKRKTINGDD-------LLWAMATLGFE-DYIDPLKAYLMRYREM 77 (134)
Q Consensus 22 caseFI~ylTSeAnd~c~---------~~kRKTI~~dD-------VL~AL~~LgF~-dyv~~Lk~~L~~yre~ 77 (134)
.-..|+..+..-...+.. ....-.|+.+| +.+||+++|++ +..+.+..+++..+..
T Consensus 45 ~l~~fl~~~~gGp~~Y~~~~g~p~l~~~H~~~~I~~~~f~~wl~~~~~al~e~~~~~~~~~~~~~~~~~~a~~ 117 (123)
T 2bmm_A 45 RLRLFLMQYWGGPRTYSERRGHPRLRMRHFPYRIGAEERDRWLTHMRAAVDDLALPAHLEQQLWEYLVYAAYA 117 (123)
T ss_dssp HHHHHHHHHHTSCCHHHHHSCCCCHHHHTTTSCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCChhHHHccCCCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 355666665544444433 23334577754 78899999986 5666666666665544
No 193
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=20.59 E-value=1.9e+02 Score=19.07 Aligned_cols=56 Identities=9% Similarity=0.052 Sum_probs=40.0
Q ss_pred HHHHHHHHHhHhhhHhhhcCCCccChhHHHHHhhhcCCc---------------cchhHHHHHHHHHHHHh
Q 032777 23 LPASFSFLSCRASDKCQKEKRKTINGDDLLWAMATLGFE---------------DYIDPLKAYLMRYREME 78 (134)
Q Consensus 23 aseFI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~LgF~---------------dyv~~Lk~~L~~yre~~ 78 (134)
-..|+.+|.-.+.+.-.++.++..+-.--+.+|+..-+. -...-|.+.|..|.+..
T Consensus 15 N~lf~~wL~e~~~~a~~r~~k~~~~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~~~c~en 85 (87)
T 2kp7_A 15 NPLFVRWLTEWRDEAASRGRHTRFVFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLKQHLASG 85 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHHHHHHHc
Confidence 457888888777766666667777777777777766543 35677888888888754
No 194
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=20.54 E-value=1e+02 Score=27.06 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=25.3
Q ss_pred hHhhhHhhhcCCCccChhHHHHHhhhcCC
Q 032777 32 CRASDKCQKEKRKTINGDDLLWAMATLGF 60 (134)
Q Consensus 32 SeAnd~c~~~kRKTI~~dDVL~AL~~LgF 60 (134)
..|.+.|..-++..|.++|+|.||=.-+=
T Consensus 15 ~~A~~~A~~~~h~~i~~eHlLlaLl~~~~ 43 (758)
T 3pxi_A 15 ALAQEEALRLGHNNIGTEHILLGLVREGE 43 (758)
T ss_dssp HHHHHHHHHTTCSEECHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHhccC
Confidence 56889999999999999999999976543
No 195
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=20.51 E-value=40 Score=22.77 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.2
Q ss_pred cChhHHHHHhhhcCCccchhH
Q 032777 46 INGDDLLWAMATLGFEDYIDP 66 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~dyv~~ 66 (134)
-+.++|..|++.|||+-.+++
T Consensus 29 P~~~EI~~a~~~lgl~~~~E~ 49 (87)
T 1lng_A 29 PSLKDIEKALKKLGLEPKIYR 49 (87)
T ss_dssp CCHHHHHHHHHHTTCCCEEET
T ss_pred CCHHHHHHHHHHcCCCeEEcc
Confidence 678999999999999976654
No 196
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.45 E-value=93 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHHhHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 26 SFSFLSCRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 26 FI~ylTSeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
=|.-|..+|.-.|.+++|..|+.+|+..|+..
T Consensus 382 di~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 382 VIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 35667778888888999999999999999864
No 197
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=20.29 E-value=48 Score=18.25 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=14.2
Q ss_pred ccChhHHHHHhhhcCCc
Q 032777 45 TINGDDLLWAMATLGFE 61 (134)
Q Consensus 45 TI~~dDVL~AL~~LgF~ 61 (134)
.++.+++..+++.+||.
T Consensus 51 ~~~~~~i~~~i~~~G~~ 67 (71)
T 2ldi_A 51 QVSEITIQERIAALGYT 67 (71)
T ss_dssp TCCTHHHHHHHHTTTCE
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 35678899999999995
No 198
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=20.26 E-value=55 Score=20.45 Aligned_cols=16 Identities=6% Similarity=0.244 Sum_probs=14.4
Q ss_pred cChhHHHHHhhhcCCc
Q 032777 46 INGDDLLWAMATLGFE 61 (134)
Q Consensus 46 I~~dDVL~AL~~LgF~ 61 (134)
++.++|+.+++.+||+
T Consensus 68 ~~~~~i~~~i~~~Gy~ 83 (85)
T 2k2p_A 68 SDAAHIAEIITAAGYT 83 (85)
T ss_dssp CCHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHcCCC
Confidence 6789999999999985
No 199
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=20.10 E-value=54 Score=23.23 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=28.9
Q ss_pred HhhhcCCCccChhHHHHHhhhcCCccchhHHHHHHH
Q 032777 37 KCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLM 72 (134)
Q Consensus 37 ~c~~~kRKTI~~dDVL~AL~~LgF~dyv~~Lk~~L~ 72 (134)
..+.++++--+.++++.||++++...-.+.++..|.
T Consensus 64 W~~~~G~~~Atv~~L~~aLr~~~l~~~ae~Ie~~l~ 99 (112)
T 1ich_A 64 WRRRTPRREATLELLGRVLRDMDLLGCLEDIEEALC 99 (112)
T ss_dssp HHHHSCCSSCHHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHhcCCCCCcHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 345577777889999999999999887777777654
No 200
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=20.01 E-value=63 Score=28.20 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=23.1
Q ss_pred hHhhhHhhhcCCCccChhHHHHHhhh
Q 032777 32 CRASDKCQKEKRKTINGDDLLWAMAT 57 (134)
Q Consensus 32 SeAnd~c~~~kRKTI~~dDVL~AL~~ 57 (134)
..|.+.|..-++..|+++|+|.||=+
T Consensus 11 ~~A~~~A~~~~h~~i~~eHLLlaLl~ 36 (758)
T 1r6b_X 11 NMAFARAREHRHEFMTVEHLLLALLS 36 (758)
T ss_dssp HHHHHHHHHTTBSEECHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHc
Confidence 57889999999999999999999843
No 201
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=20.00 E-value=1.3e+02 Score=20.60 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=20.3
Q ss_pred hhhcCCCccChhHHHHHhhhcCCc
Q 032777 38 CQKEKRKTINGDDLLWAMATLGFE 61 (134)
Q Consensus 38 c~~~kRKTI~~dDVL~AL~~LgF~ 61 (134)
.-.++--+|+.+++..+|..+|+.
T Consensus 48 ~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 48 LDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred hCCCCCCcCCHHHHHHHHHHcCCC
Confidence 345778899999999999999986
Done!