BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032780
         (134 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
 pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
          Length = 249

 Score = 34.7 bits (78), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 14 EAQYVELMVPLYSHGCERKVKKTLTHLKGIYSVNVDYDQQKVIVWGICNKYDVLETIRSK 73
          EA Y    +P++   C   +K  L ++ GI S+N D +QQ + V        ++ T+R+ 
Sbjct: 8  EATYA---IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNC 64

Query: 74 RKEA 77
           K+A
Sbjct: 65 GKDA 68


>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
          Dismutase
 pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
          Dismutase
          Length = 222

 Score = 32.3 bits (72), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 14 EAQYVELMVPLYSHGCERKVKKTLTHLKGIYSVNVDYDQQKVIVWGICNKYDVLETIRSK 73
          EA Y    +P +   C   +K  L ++ GI S+N D +QQ   V        ++ T+R+ 
Sbjct: 7  EATYA---IPXHCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNC 63

Query: 74 RKEA 77
           K+A
Sbjct: 64 GKDA 67


>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
           (Yor323c) From Saccharomyces Cerevisiae At 2.40 A
           Resolution
 pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
           (Yor323c) From Saccharomyces Cerevisiae At 2.40 A
           Resolution
          Length = 468

 Score = 29.6 bits (65), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 14  EAQYVELMVPLYSHGCERKVKKT-----LTHLKGIYSVNVDYD 51
           + +Y++L+VP  S+   RK+K T     L H  GI S+ +D D
Sbjct: 207 QDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDED 249


>pdb|3IVT|A Chain A, Homocitrate Synthase Lys4 Bound To 2-Og
 pdb|3IVT|B Chain B, Homocitrate Synthase Lys4 Bound To 2-Og
 pdb|3IVU|A Chain A, Homocitrate Synthase Lys4 Bound To 2-Og
 pdb|3IVU|B Chain B, Homocitrate Synthase Lys4 Bound To 2-Og
 pdb|3MI3|A Chain A, Homocitrate Synthase Lys4 Bound To Lysine
 pdb|3MI3|B Chain B, Homocitrate Synthase Lys4 Bound To Lysine
          Length = 423

 Score = 29.3 bits (64), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 30/118 (25%)

Query: 4   MQIVPACKNVEAQYVELMVPLYS----HGCERKVK-----KTLTHLK------------G 42
           +QI  A  N    Y+EL  P+ S      CE   K     K LTH++            G
Sbjct: 64  IQIAKALDNFGVDYIELTSPVASEQSRQDCEAICKLGLKCKILTHIRCHMDDARVAVETG 123

Query: 43  IYSVNV---------DYDQQKVIVWGICNKYDVLETIRSKRKEARFWNQEGNLNDVME 91
           +  V+V          Y   K + + I +  +V+  ++SK  E RF +++   +D+++
Sbjct: 124 VDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVD 181


>pdb|3IVS|A Chain A, Homocitrate Synthase Lys4
 pdb|3IVS|B Chain B, Homocitrate Synthase Lys4
          Length = 423

 Score = 29.3 bits (64), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 30/118 (25%)

Query: 4   MQIVPACKNVEAQYVELMVPLYS----HGCERKVK-----KTLTHLK------------G 42
           +QI  A  N    Y+EL  P+ S      CE   K     K LTH++            G
Sbjct: 64  IQIAKALDNFGVDYIELTSPVASEQSRQDCEAICKLGLKCKILTHIRCHXDDARVAVETG 123

Query: 43  IYSVNV---------DYDQQKVIVWGICNKYDVLETIRSKRKEARFWNQEGNLNDVME 91
           +  V+V          Y   K + + I +  +V+  ++SK  E RF +++   +D+++
Sbjct: 124 VDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVD 181


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,099,564
Number of Sequences: 62578
Number of extensions: 95499
Number of successful extensions: 216
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 6
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)