BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032783
         (134 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SQL|A Chain A, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|B Chain B, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|C Chain C, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|D Chain D, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|E Chain E, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|F Chain F, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|G Chain G, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|H Chain H, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|I Chain I, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|J Chain J, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|K Chain K, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|L Chain L, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|M Chain M, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|N Chain N, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|O Chain O, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
 pdb|1SQL|P Chain P, Crystal Structure Of 7,8-Dihydroneopterin Aldolase In
           Complex With Guanine
          Length = 146

 Score =  167 bits (422), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 102/126 (80%), Gaps = 1/126 (0%)

Query: 9   GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIV 68
           GDKLIL+GL+F+GFHG   EERTLGQ F+VD+DAW+ L+KAG++D L DTISY  I+ + 
Sbjct: 21  GDKLILKGLKFYGFHGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLA 80

Query: 69  KEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKPHVA-VEGSLDYLGIEILRHR 127
           KEI+EG P NLLE+VAELIAS TL K+ QI+AVRVK+ KP+VA ++ ++DYLG++I R R
Sbjct: 81  KEIVEGSPRNLLETVAELIASKTLEKFHQINAVRVKLSKPNVALIKSTIDYLGVDIFRQR 140

Query: 128 SVDAPN 133
           +  + N
Sbjct: 141 NTSSKN 146


>pdb|1RRI|A Chain A, Dhna Complex With 3-(5-Amino-7-Hydroxy-[1,2,3] Triazolo
           [4,5- D]pyrimidin-2-Yl)-Benzoic Acid
 pdb|1RRW|A Chain A, Dhna Complexed With 9-Methylguanine
 pdb|1RRY|A Chain A, Dhna Complexed With
           2-Amino-4-Hydroxy-5-Carboxyethylpyrimidine
 pdb|1RS2|A Chain A, Dhna Complex With
           8-Amino-1,3-Dimethyl-3,7-Dihydropurine-2,6-Dione
 pdb|1RS4|A Chain A, Dhna, 7,8-Dihydroneopterin Aldolase Complexed With
           3-(5-Amino-7-
           Hydroxy-[1,2,3]triazolo[4,5-D]pyrimidin-2-Yl)-N-(3,
           5-Dichlorobenzyl)- Benzamide
 pdb|1RSD|A Chain A, Dhna Complex With
           3-(5-Amino-7-Hydroxy-[1,2,3]triazolo[4,5-
           D]pyrimidin-2-Yl)-N-[2-(2-Hydroxymethyl-Phenylsulfanyl)-
           Benzyl]- Benzamide
 pdb|1RSI|A Chain A, Dhna Complex With
           2-amino-5-bromo-3-hydroxy-6-phenylpyrimidine
 pdb|1U68|A Chain A, Dhna 7,8 Dihydroneopterin Complex
 pdb|1DHN|A Chain A, 1.65 Angstrom Resolution Structure Of 7,8-dihydroneopterin
           Aldolase From Staphylococcus Aureus
 pdb|2DHN|A Chain A, Complex Of 7,8-Dihydroneopterin Aldolase From
           Staphylococcus Aureus With
           6-Hydroxymethyl-7,8-Dihydropterin At 2.2 A Resolution
 pdb|2NM2|A Chain A, Crystal Structure Of Dihydroneopterin Aldolase From S.
           Aureus In Complex With (1s,2r)-Neopterin At 1.50
           Angstrom Resolution
 pdb|2NM2|B Chain B, Crystal Structure Of Dihydroneopterin Aldolase From S.
           Aureus In Complex With (1s,2r)-Neopterin At 1.50
           Angstrom Resolution
 pdb|2NM2|C Chain C, Crystal Structure Of Dihydroneopterin Aldolase From S.
           Aureus In Complex With (1s,2r)-Neopterin At 1.50
           Angstrom Resolution
 pdb|2NM2|D Chain D, Crystal Structure Of Dihydroneopterin Aldolase From S.
           Aureus In Complex With (1s,2r)-Neopterin At 1.50
           Angstrom Resolution
 pdb|2NM3|A Chain A, Crystal Structure Of Dihydroneopterin Aldolase From S.
           Aureus In Complex With (1s,2s)-Monapterin At 1.68
           Angstrom Resolution
          Length = 121

 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 74/116 (63%)

Query: 10  DKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVK 69
           D + L+G+RF+G+HG    E  +GQ F VDV   +DL +AG+TD + DT+ Y  ++  VK
Sbjct: 3   DTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVK 62

Query: 70  EIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILR 125
            IMEG   NLLE +AE IA+   ++Y ++   +V++ K +  + G  D +GIEI+R
Sbjct: 63  SIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVR 118


>pdb|1NBU|C Chain C, 7,8-Dihydroneopterin Aldolase Complexed With Product From
           Mycobacterium Tuberculosis
          Length = 119

 Score = 92.0 bits (227), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 9   GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIV 68
            D++ LRGL  HG HGV   ER  GQ+FV+DV  W+DL +A  +D LADT  Y  +    
Sbjct: 2   ADRIELRGLTVHGRHGVAAHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRA 61

Query: 69  KEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHR 127
            EI+ GPP  L+E+V   IA   +    ++ AV V V KP   +  + D + + I R R
Sbjct: 62  AEIVAGPPRKLIETVGAEIADHVMDDQ-RVHAVEVAVHKPQAPIPQTFDDVAVVIRRSR 119


>pdb|1NBU|B Chain B, 7,8-Dihydroneopterin Aldolase Complexed With Product From
           Mycobacterium Tuberculosis
 pdb|1NBU|D Chain D, 7,8-Dihydroneopterin Aldolase Complexed With Product From
           Mycobacterium Tuberculosis
          Length = 119

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 9   GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIV 68
            D++ LRGL  HG HGV   ER  GQ+FV+DV  W+DL +A  +D LADT  Y  +    
Sbjct: 2   ADRIELRGLTVHGRHGVYAHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRA 61

Query: 69  KEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHR 127
            EI+ GPP  L+E+V   IA   +    ++ AV V V KP   +  + D + + I R R
Sbjct: 62  AEIVAGPPRKLIETVGAEIADHVMDDQ-RVHAVEVAVHKPQAPIPQTFDDVAVVIRRSR 119


>pdb|1NBU|A Chain A, 7,8-Dihydroneopterin Aldolase Complexed With Product From
           Mycobacterium Tuberculosis
 pdb|1NBU|E Chain E, 7,8-Dihydroneopterin Aldolase Complexed With Product From
           Mycobacterium Tuberculosis
 pdb|1NBU|F Chain F, 7,8-Dihydroneopterin Aldolase Complexed With Product From
           Mycobacterium Tuberculosis
 pdb|1NBU|G Chain G, 7,8-Dihydroneopterin Aldolase Complexed With Product From
           Mycobacterium Tuberculosis
 pdb|1NBU|H Chain H, 7,8-Dihydroneopterin Aldolase Complexed With Product From
           Mycobacterium Tuberculosis
          Length = 119

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 66/119 (55%), Gaps = 1/119 (0%)

Query: 9   GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIV 68
            D++ LRGL  HG HGV   ER  GQ+FV+DV  W+DL +A  +D LADT  Y  +    
Sbjct: 2   ADRIELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRA 61

Query: 69  KEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHR 127
            EI+ GPP  L+E+V   IA   +    ++ AV V V KP   +  + D + + I R R
Sbjct: 62  AEIVAGPPRKLIETVGAEIADHVMDDQ-RVHAVEVAVHKPQAPIPQTFDDVAVVIRRSR 119


>pdb|1Z9W|A Chain A, Tetrameric Structure Of Apo-7,8-Dihydroneopterin Aldolase
           From Mycobacterium Tuberculosis
          Length = 133

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 9   GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIV 68
            D++ LRGL  HG HGV   ER  GQ+FV+DV  W+DL +A  +D LADT  Y  +    
Sbjct: 2   ADRIELRGLTVHGRHGVYDHERVAGQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRA 61

Query: 69  KEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEI 123
            EI+ GPP  L+E+V   IA   +    ++ AV V V KP   +  + D + + I
Sbjct: 62  AEIVAGPPRKLIETVGAEIADHVMDDQ-RVHAVEVAVHKPQAPIPQTFDDVAVVI 115


>pdb|2CG8|A Chain A, The Bifunctional Dihydroneopterin Aldolase
           6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
           Streptococcus Pneumoniae
 pdb|2CG8|B Chain B, The Bifunctional Dihydroneopterin Aldolase
           6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
           Streptococcus Pneumoniae
 pdb|2CG8|C Chain C, The Bifunctional Dihydroneopterin Aldolase
           6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
           Streptococcus Pneumoniae
 pdb|2CG8|D Chain D, The Bifunctional Dihydroneopterin Aldolase
           6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
           Streptococcus Pneumoniae
          Length = 270

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 10  DKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDL-LADTISYTAIYRIV 68
           D+L ++ L    +HG+   E+ LGQKF+V      D+ KA  TDL L  ++ Y  + +  
Sbjct: 2   DQLQIKDLEMFAYHGLFPSEKELGQKFIVSAILSYDMTKAA-TDLDLTASVHYGELCQQW 60

Query: 69  KEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHRS 128
               +    +L+E+VA  +   T   YP +  +++++ KP   V  SLD   + I R + 
Sbjct: 61  TTWFQETSEDLIETVAYKLVERTFESYPLVQEMKLELKKPWAPVHLSLDTCSVTIHRRKQ 120


>pdb|2O90|A Chain A, Atomic Resolution Crystal Structure Of E.coli
           Dihydroneopterin Aldolase In Complex With Neopterin
          Length = 122

 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%)

Query: 24  GVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESV 83
           GV   E+T+ QK V D++   D RKA K+D +AD +SY  I   V   +EG    L+E V
Sbjct: 16  GVYDWEQTIEQKLVFDIEMAWDNRKAAKSDDVADCLSYADIAETVVSHVEGARFALVERV 75

Query: 84  AELIASTTLTKYPQISAVRVKVGKP 108
           AE +A   L ++     VR+K+ KP
Sbjct: 76  AEEVAELLLARFNS-PWVRIKLSKP 99


>pdb|3O1K|A Chain A, Crystal Structure Of Putative Dihydroneopterin Aldolase
           (Folb) From Vibrio Cholerae O1 Biovar El Tor Str. N16961
 pdb|3O1K|B Chain B, Crystal Structure Of Putative Dihydroneopterin Aldolase
           (Folb) From Vibrio Cholerae O1 Biovar El Tor Str. N16961
 pdb|3O1K|C Chain C, Crystal Structure Of Putative Dihydroneopterin Aldolase
           (Folb) From Vibrio Cholerae O1 Biovar El Tor Str. N16961
 pdb|3O1K|D Chain D, Crystal Structure Of Putative Dihydroneopterin Aldolase
           (Folb) From Vibrio Cholerae O1 Biovar El Tor Str. N16961
          Length = 132

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 10  DKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVK 69
           DK+ +  L      GV   E+ + QK V+D++   D R AGK+D +AD + Y  + + V 
Sbjct: 17  DKVFIEQLEVITTIGVYDWEQQIKQKLVLDLEMAHDNRAAGKSDDVADALDYAQVSQAVL 76

Query: 70  EIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKP 108
           E +E     L+E VAE +A   +T++  +  +R+++ KP
Sbjct: 77  EHIEQGRFLLVERVAEEVAELIMTRFA-VPWLRIRLTKP 114


>pdb|3R2E|A Chain A, Dihydroneopterin AldolaseDIHYDRONEOPTERIN TRIPHOSPHATE
           2'-Epimerase From Yersinia Pestis
          Length = 143

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 24  GVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESV 83
           GV   E+T+ QK V D++   D RKA  +D + D +SY  I   V + +      L+E V
Sbjct: 40  GVYDWEQTIQQKLVFDIEMGWDNRKAAGSDDVNDCLSYADISEAVIQHVGSQRFALVERV 99

Query: 84  AELIASTTLTKYPQISAVRVKVGKP 108
           AE +A   L ++     VR+KV KP
Sbjct: 100 AEEVAELLLRRFNS-PWVRIKVSKP 123


>pdb|1B9L|A Chain A, 7,8-Dihydroneopterin Triphosphate Epimerase
 pdb|1B9L|B Chain B, 7,8-Dihydroneopterin Triphosphate Epimerase
 pdb|1B9L|C Chain C, 7,8-Dihydroneopterin Triphosphate Epimerase
 pdb|1B9L|D Chain D, 7,8-Dihydroneopterin Triphosphate Epimerase
 pdb|1B9L|E Chain E, 7,8-Dihydroneopterin Triphosphate Epimerase
 pdb|1B9L|F Chain F, 7,8-Dihydroneopterin Triphosphate Epimerase
 pdb|1B9L|G Chain G, 7,8-Dihydroneopterin Triphosphate Epimerase
 pdb|1B9L|H Chain H, 7,8-Dihydroneopterin Triphosphate Epimerase
          Length = 120

 Score = 32.3 bits (72), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 37/72 (51%)

Query: 14 LRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIME 73
          ++ LR   F G+K+EE    Q  V++V       KA  ++ + D ++Y  + + + + +E
Sbjct: 10 IKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADKARTSEDINDALNYRTVTKNIIQHVE 69

Query: 74 GPPHNLLESVAE 85
              +LLE + +
Sbjct: 70 NNRFSLLEKLTQ 81


>pdb|4AEY|A Chain A, Crystal Structure Of Folx From Pseudomonas Aeruginosa
          Length = 156

 Score = 29.6 bits (65), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 11  KLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKE 70
           ++ ++ LR   F G+K+EE    Q  ++++        A + + +   ++Y  I + +  
Sbjct: 43  RIRVKDLRLRTFIGIKEEEILNKQDVLINLTILYPAADAVEVNDIEHALNYRTITKAIIR 102

Query: 71  IMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGKPH 109
            +E     LLE + + I    +   P +    V+V KPH
Sbjct: 103 HVEENRFALLERMTQEILDLVMEN-PAVRYAEVEVDKPH 140


>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex
 pdb|2VSO|F Chain F, Crystal Structure Of A Translation Initiation Complex
 pdb|2VSX|E Chain E, Crystal Structure Of A Translation Initiation Complex
 pdb|2VSX|F Chain F, Crystal Structure Of A Translation Initiation Complex
          Length = 284

 Score = 27.3 bits (59), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 51  KTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIAS 89
           + +LL   + +    R++K++ + P    LESV EL+ +
Sbjct: 185 RLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNT 223


>pdb|2HB6|A Chain A, Structure Of Caenorhabditis Elegans Leucine
          Aminopeptidase (Lap1)
 pdb|2HB6|B Chain B, Structure Of Caenorhabditis Elegans Leucine
          Aminopeptidase (Lap1)
 pdb|2HC9|A Chain A, Structure Of Caenorhabditis Elegans Leucine
          Aminopeptidase-Zinc Complex (Lap1)
          Length = 491

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 6/41 (14%)

Query: 6  IMKGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDL 46
          I+ G K +L+ + F G      + + + QKFV D D+W  +
Sbjct: 21 IIVGKKSVLKNVTFEG------KFKEVAQKFVTDGDSWNSM 55


>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
 pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
          Length = 334

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 21/52 (40%)

Query: 55  LADTISYTAIYRIVKEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVG 106
           LA   SYTAI   VK   +GP   +L    + + ST        S    K G
Sbjct: 247 LAQPASYTAIKEAVKAAAKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAG 298


>pdb|1RQH|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
           Bound To Pyruvic Acid
          Length = 472

 Score = 25.4 bits (54), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 74  GPPHNLLESVAELIASTTLT 93
           GP HN  ESVAE++  T  T
Sbjct: 246 GPGHNPTESVAEMLEGTGYT 265


>pdb|1RR2|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
           Bound To 2- Ketobutyric Acid
          Length = 473

 Score = 25.4 bits (54), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 74  GPPHNLLESVAELIASTTLT 93
           GP HN  ESVAE++  T  T
Sbjct: 247 GPGHNPTESVAEMLEGTGYT 266


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.139    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,898,976
Number of Sequences: 62578
Number of extensions: 139737
Number of successful extensions: 307
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 25
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)