Query 032783
Match_columns 134
No_of_seqs 148 out of 1020
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:54:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1539 FolB Dihydroneopterin 100.0 2.8E-38 6.1E-43 221.8 15.5 119 8-128 1-119 (121)
2 TIGR00525 folB dihydroneopteri 100.0 1.4E-37 2.9E-42 216.6 15.3 116 10-125 1-116 (116)
3 PRK11593 folB bifunctional dih 100.0 7.3E-37 1.6E-41 214.0 15.5 117 9-128 1-117 (119)
4 TIGR00526 folB_dom FolB domain 100.0 9.9E-37 2.1E-41 212.8 14.8 118 9-127 1-118 (118)
5 cd00534 DHNA_DHNTPE Dihydroneo 100.0 1.5E-36 3.3E-41 211.8 15.5 118 9-126 1-118 (118)
6 PRK11245 folX D-erythro-7,8-di 100.0 4.8E-36 1E-40 210.3 14.9 117 8-127 4-120 (120)
7 PF02152 FolB: Dihydroneopteri 100.0 7.8E-36 1.7E-40 206.4 10.7 113 12-125 1-113 (113)
8 cd00651 TFold Tunnelling fold 99.9 1.5E-25 3.3E-30 155.3 14.7 116 9-126 1-122 (122)
9 KOG2544 Dihydropteroate syntha 99.6 7.2E-15 1.6E-19 122.1 10.1 119 7-127 3-121 (711)
10 KOG2544 Dihydropteroate syntha 98.9 1.2E-09 2.7E-14 91.3 2.7 103 7-125 127-230 (711)
11 PF01014 Uricase: Uricase; In 95.6 0.048 1E-06 38.8 5.9 75 30-107 23-103 (138)
12 COG1469 Uncharacterized conser 94.5 0.93 2E-05 36.4 11.0 91 5-106 15-105 (289)
13 cd00445 Uricase Urate oxidase 93.2 0.56 1.2E-05 37.6 7.6 73 34-106 24-96 (286)
14 TIGR03383 urate_oxi urate oxid 93.1 0.57 1.2E-05 37.4 7.6 74 33-106 26-99 (282)
15 PLN02415 uricase 92.3 0.91 2E-05 36.7 7.8 73 34-106 32-105 (304)
16 PF01242 PTPS: 6-pyruvoyl tetr 88.6 6.1 0.00013 27.1 10.6 86 16-106 5-111 (123)
17 PRK13675 GTP cyclohydrolase; P 86.8 15 0.00033 29.7 10.8 91 7-106 16-109 (308)
18 PF02649 GCHY-1: Type I GTP cy 85.6 9.8 0.00021 30.2 9.1 89 8-106 14-104 (276)
19 cd00445 Uricase Urate oxidase 83.7 8.4 0.00018 30.9 7.9 90 14-105 140-248 (286)
20 TIGR03383 urate_oxi urate oxid 82.1 13 0.00028 29.9 8.3 88 14-105 143-244 (282)
21 TIGR00039 6PTHBS 6-pyruvoyl te 81.7 15 0.00032 25.4 8.8 86 16-106 7-110 (124)
22 COG3648 Uricase (urate oxidase 75.5 19 0.00042 28.6 7.3 70 33-105 184-259 (299)
23 PLN02415 uricase 70.4 41 0.00089 27.3 8.3 89 14-105 148-256 (304)
24 PRK13258 7-cyano-7-deazaguanin 67.5 38 0.00082 23.4 10.8 99 7-128 13-111 (114)
25 TIGR03367 queuosine_QueD queuo 58.5 49 0.0011 21.6 7.6 70 17-91 6-90 (92)
26 PF06183 DinI: DinI-like famil 56.8 24 0.00051 21.9 3.7 29 78-109 4-32 (65)
27 PRK04456 acetyl-CoA decarbonyl 49.9 26 0.00056 29.9 4.0 34 73-106 120-153 (463)
28 COG4972 PilM Tfp pilus assembl 48.9 1.6E+02 0.0034 24.5 8.3 94 31-129 29-149 (354)
29 PRK13674 putative GTP cyclohyd 48.5 1.4E+02 0.003 23.8 11.7 86 7-106 21-107 (271)
30 PRK10597 DNA damage-inducible 45.2 40 0.00086 22.0 3.5 29 76-104 14-43 (81)
31 TIGR03112 6_pyr_pter_rel 6-pyr 44.5 1E+02 0.0022 21.1 8.9 70 27-105 18-102 (113)
32 COG0720 6-pyruvoyl-tetrahydrop 43.7 1.1E+02 0.0024 21.3 7.1 78 14-96 6-100 (127)
33 COG2098 Uncharacterized protei 38.7 1.2E+02 0.0026 21.0 5.2 30 76-106 35-64 (116)
34 PHA02094 hypothetical protein 38.0 69 0.0015 20.3 3.6 38 80-124 43-80 (81)
35 TIGR00316 cdhC CO dehydrogenas 36.7 56 0.0012 27.9 4.0 31 75-106 120-150 (458)
36 COG3648 Uricase (urate oxidase 35.5 1.5E+02 0.0033 23.7 6.0 72 36-107 37-110 (299)
37 PRK12606 GTP cyclohydrolase I; 33.9 2.1E+02 0.0046 21.7 10.6 79 10-105 78-156 (201)
38 cd00470 PTPS 6-pyruvoyl tetrah 32.5 1.8E+02 0.0038 20.4 9.7 71 30-105 37-122 (135)
39 PRK04439 S-adenosylmethionine 27.6 84 0.0018 26.5 3.6 45 80-125 315-360 (399)
40 PF14468 DUF4427: Protein of u 27.5 99 0.0021 21.9 3.4 29 78-107 81-109 (132)
41 TIGR02174 CXXU_selWTH selT/sel 27.2 1.3E+02 0.0028 18.6 3.7 25 83-108 14-38 (72)
42 PTZ00484 GTP cyclohydrolase I; 27.0 3.2E+02 0.007 21.7 10.2 80 10-106 137-216 (259)
43 PF00479 G6PD_N: Glucose-6-pho 26.9 1.9E+02 0.0042 21.3 5.2 53 55-108 81-145 (183)
44 cd00642 GTP_cyclohydro1 GTP cy 26.8 2.7E+02 0.006 20.8 10.6 80 10-106 63-142 (185)
45 COG0275 Predicted S-adenosylme 26.5 50 0.0011 26.9 2.1 35 52-93 138-172 (314)
46 TIGR01297 CDF cation diffusion 26.1 2.8E+02 0.006 21.0 6.1 25 82-106 242-266 (268)
47 PF03598 CdhC: CO dehydrogenas 24.7 54 0.0012 27.7 2.0 30 76-106 121-151 (411)
48 PF01227 GTP_cyclohydroI: GTP 24.3 3E+02 0.0066 20.5 10.1 81 9-106 57-137 (179)
49 COG0302 FolE GTP cyclohydrolas 23.2 3.1E+02 0.0066 20.9 5.6 80 9-105 71-150 (195)
50 PF09580 Spore_YhcN_YlaJ: Spor 22.3 2E+02 0.0043 20.6 4.4 41 76-124 69-109 (177)
51 PF00958 GMP_synt_C: GMP synth 21.7 2.5E+02 0.0055 18.6 4.5 60 23-107 26-85 (93)
52 PF02700 PurS: Phosphoribosylf 20.8 1.8E+02 0.0038 18.6 3.5 27 79-106 53-79 (80)
53 PF13066 DUF3929: Protein of u 20.6 1E+02 0.0022 18.7 2.1 25 65-89 11-35 (65)
54 COG0062 Uncharacterized conser 20.5 3.1E+02 0.0068 20.8 5.3 24 74-97 23-46 (203)
55 COG1812 MetK Archaeal S-adenos 20.1 1.2E+02 0.0026 25.4 3.1 44 81-125 317-361 (400)
No 1
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-38 Score=221.82 Aligned_cols=119 Identities=42% Similarity=0.688 Sum_probs=112.3
Q ss_pred CcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 032783 8 KGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELI 87 (134)
Q Consensus 8 ~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~I 87 (134)
|||+|+|+||+|+++||+++|||..||+|.||++|++|.++|+.+|||.+|+||+.+++.|++++++++|.|||+||+.|
T Consensus 1 ~md~v~i~~l~~~~~iGv~~~E~~~~Q~~~Vdl~l~~d~~~A~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~i 80 (121)
T COG1539 1 MMDRVFIENLEFFAYIGVLDEERKLGQKFVVDLTLGYDLRKAAESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEI 80 (121)
T ss_pred CccEEEEcceEEEEEEcCCHHHhccCCeEEEEEEEeccchhhcCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEEEeC
Q 032783 88 ASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHRS 128 (134)
Q Consensus 88 a~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r~r~ 128 (134)
|+.++.+||.+..++|+++||.||+++. .+||++++.|+
T Consensus 81 a~~l~~~~~~v~~~~v~v~KP~ap~~~~--~~~V~ie~~r~ 119 (121)
T COG1539 81 ADLLLARFPRVELVEVKVTKPKAPIPAA--LVGVEIEIERN 119 (121)
T ss_pred HHHHHhhCCccEEEEEEEECCCCCCCcC--cccEEEEEEec
Confidence 9999999999999999999999999974 55666666554
No 2
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=100.00 E-value=1.4e-37 Score=216.62 Aligned_cols=116 Identities=40% Similarity=0.728 Sum_probs=112.8
Q ss_pred CEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 032783 10 DKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIAS 89 (134)
Q Consensus 10 d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~ 89 (134)
|+|+|+||+++++||+++|||..+|++.+|+++++++..++.+|++++|+||+.+++.|.+++++++|+|||+||++|++
T Consensus 1 d~I~i~~l~~~~~iGv~~~Er~~~Q~~~idv~l~~~~~~a~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~ 80 (116)
T TIGR00525 1 DRVFIEGLEVFAYHGVFDHERVLGQRFVVDLELSVDETKAAESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIAD 80 (116)
T ss_pred CEEEEeeeEEEEEECCCHHHHccCCEEEEEEEEEEcChhhhccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEE
Q 032783 90 TTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILR 125 (134)
Q Consensus 90 ~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r 125 (134)
.++.+||++.+++|+++||+||++|++++|||+++|
T Consensus 81 ~i~~~~~~v~~v~v~i~Kp~api~g~~~~v~V~i~r 116 (116)
T TIGR00525 81 RLFADFPQVQRVKVRVSKPNAPIPGHLDDVSVEIRR 116 (116)
T ss_pred HHHHHCCCceEEEEEEEeCCCCCCCcCCEEEEEEEC
Confidence 999999999999999999999999889999999986
No 3
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=100.00 E-value=7.3e-37 Score=213.95 Aligned_cols=117 Identities=33% Similarity=0.414 Sum_probs=111.7
Q ss_pred cCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 032783 9 GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIA 88 (134)
Q Consensus 9 ~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia 88 (134)
||+|+|+||+++++||+++|||..||+|.||+++++++..++.+|+|.+|+||+.+++.|.+++++++|+|||+||+.|+
T Consensus 1 ~d~I~i~~L~~~a~iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia 80 (119)
T PRK11593 1 MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVA 80 (119)
T ss_pred CCEEEEeCcEEEEEECCCHHHHcCCCEEEEEEEEEecccccccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEEEeC
Q 032783 89 STTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHRS 128 (134)
Q Consensus 89 ~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r~r~ 128 (134)
+.++.+|+ +.+++|+|+||+||. .+++|||+++|+|.
T Consensus 81 ~~i~~~~~-~~~v~v~v~Kp~a~~--~~~~v~V~i~r~~~ 117 (119)
T PRK11593 81 ELLLARFN-SPWVRIKLSKPGAVA--RAANVGVIIERGNN 117 (119)
T ss_pred HHHHhhCC-CcEEEEEEECCCCCC--cCCEEEEEEEEecC
Confidence 99999986 699999999999985 35799999999986
No 4
>TIGR00526 folB_dom FolB domain. Two paralogous genes of E. coli, folB (dihydroneopterin aldolase) and folX (d-erythro-7,8-dihydroneopterin triphosphate epimerase) are homologous to each other and homo-octameric. In Pneumocystis carinii, a multifunctional enzyme of folate synthesis has an N-terminal region active as dihydroneopterin aldolase. This region consists of two tandem sequences each homologous to folB and forms tetramers.
Probab=100.00 E-value=9.9e-37 Score=212.84 Aligned_cols=118 Identities=31% Similarity=0.475 Sum_probs=112.9
Q ss_pred cCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 032783 9 GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIA 88 (134)
Q Consensus 9 ~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia 88 (134)
||+|+|+||+++++||+++|||..||+|.+|++++++...++.+|||++|+||+.+++.|.+++++++|+|||+||++|+
T Consensus 1 ~d~I~i~~l~~~~~iGv~~~Er~~~Q~v~vdv~l~~~~~~a~~~Ddl~~ti~Y~~l~~~i~~~~~~~~~~llE~la~~ia 80 (118)
T TIGR00526 1 MDRVHIKNLEMHTIIGVFEWERLLPQKVVVDLTLGYDASKAANSDDLSDSLNYAEIASNITKFVEENPFKLIETLAKSVS 80 (118)
T ss_pred CCEEEEcceEEEEEEcCCHHHHhcCCeEEEEEEEeeCchHhhccCCHHHccCHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEEEe
Q 032783 89 STTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHR 127 (134)
Q Consensus 89 ~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r~r 127 (134)
+.++.+||.+.+++|+|+||+ |+++.+++|||+++|+|
T Consensus 81 ~~i~~~~~~v~~v~v~v~Kp~-p~~~~~~~v~v~i~r~r 118 (118)
T TIGR00526 81 EVVLDDYQKVTEVELEVSKPK-PIPLLADGVSVIIRRER 118 (118)
T ss_pred HHHHHhCCCceEEEEEEECCc-cccCcCcEEEEEEEEcC
Confidence 999999999999999999999 36677899999999976
No 5
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=100.00 E-value=1.5e-36 Score=211.83 Aligned_cols=118 Identities=49% Similarity=0.844 Sum_probs=114.2
Q ss_pred cCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 032783 9 GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIA 88 (134)
Q Consensus 9 ~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia 88 (134)
+|+|+|+||+++++||+++|||..||++.+|+++.++...++.+|+|++|+||+.+++.|.+++++++|+|||+||++|+
T Consensus 1 ~d~I~i~~l~~~~~iGv~~~Er~~~Q~~~idv~~~~~~~~a~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia 80 (118)
T cd00534 1 MDRVFIKGLRFYTIHGVFEEERLLGQKFVVDLTLWYDLSKAGESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIA 80 (118)
T ss_pred CCEEEEcccEEEEEECCCHHHHhcCCeEEEEEEEEeCchhhhccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEEE
Q 032783 89 STTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRH 126 (134)
Q Consensus 89 ~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r~ 126 (134)
+.++..|+++.+++|+++||+||+++.++++||+++|+
T Consensus 81 ~~i~~~~~~v~~v~v~v~K~~~~i~~~~~~v~v~i~r~ 118 (118)
T cd00534 81 DILLEDYPKVSAIKVKVEKPNAPIPASADGVGVEIERE 118 (118)
T ss_pred HHHHHhCCCceEEEEEEECCCCCCCCCCcEEEEEEEEC
Confidence 99999988999999999999999988889999999984
No 6
>PRK11245 folX D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=100.00 E-value=4.8e-36 Score=210.26 Aligned_cols=117 Identities=23% Similarity=0.362 Sum_probs=111.3
Q ss_pred CcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHH
Q 032783 8 KGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELI 87 (134)
Q Consensus 8 ~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~I 87 (134)
.+++|+|+||+++++||+++|||..||+|.||++++++..+++.+|||.+|+||+.+++.|.+++++++|+|||+||+.|
T Consensus 4 ~~~~I~i~~L~~~a~iGv~~~Er~~~Q~~~vdl~l~~d~~~a~~sDdl~~tidY~~v~~~i~~~v~~~~~~llE~la~~I 83 (120)
T PRK11245 4 PAAIIRIKNLRLRTFIGIKEEEINNRQDVVINVTIHYPADKARTSDDIDDALNYRTITKNIIQHVENNRFSLLEKLTQDV 83 (120)
T ss_pred ccCEEEEeceEEEEEECCCHHHHccCCeEEEEEEEecCchhhccccCHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEEEe
Q 032783 88 ASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHR 127 (134)
Q Consensus 88 a~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r~r 127 (134)
++.++. ++++.+++|+|+||+||. ++++|||+++|+|
T Consensus 84 a~~i~~-~~~v~~v~v~v~Kp~a~~--~~~~v~V~i~~~r 120 (120)
T PRK11245 84 LDIARE-HPWVTYAEVEIDKPHALR--FADSVSMTLSWQR 120 (120)
T ss_pred HHHHHc-cCCccEEEEEEECCCCCC--cCcEEEEEEEEeC
Confidence 999987 688999999999999973 5789999999986
No 7
>PF02152 FolB: Dihydroneopterin aldolase; InterPro: IPR006157 Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers [].; GO: 0004150 dihydroneopterin aldolase activity, 0006760 folic acid-containing compound metabolic process; PDB: 1SQL_P 2O90_A 1B9L_A 1RSI_A 2NM2_C 1RRY_A 1RRW_A 1RS2_A 2DHN_A 1DHN_A ....
Probab=100.00 E-value=7.8e-36 Score=206.36 Aligned_cols=113 Identities=38% Similarity=0.609 Sum_probs=109.9
Q ss_pred EEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 032783 12 LILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIASTT 91 (134)
Q Consensus 12 I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~~i 91 (134)
|+|+||+++++||+++|||..+|+|.+|+++++++..++.+|++.+|+||+.+++.|.+++++++|+|||+||++|++.+
T Consensus 1 I~i~~l~~~~~iGv~~~Er~~~Q~v~id~~l~~~~~~a~~~D~l~~tvdY~~l~~~i~~~~~~~~f~llE~la~~i~~~i 80 (113)
T PF02152_consen 1 IFIKDLRVYAIIGVYPWERERPQPVVIDLELEYDFSKAGSSDDLDDTVDYAELAEAIRELVENSHFNLLETLAERIADRI 80 (113)
T ss_dssp EEEEEEEEEEEESSSHHHHHSEEEEEEEEEEEEEHHHHHHHTTGGGSSHHHHHHHHHHHHHHSSEESSHHHHHHHHHHHH
T ss_pred CEEeeEEEEEEECCCHHHHccCCEEEEEEEEEechhHhccccccccccCHHHHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEE
Q 032783 92 LTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILR 125 (134)
Q Consensus 92 ~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r 125 (134)
+++||.+.+++|+++||+| +++.+++|||+++|
T Consensus 81 ~~~~~~v~~v~v~v~Kp~a-~~~~~~~v~v~i~R 113 (113)
T PF02152_consen 81 LKEFPQVQSVTVKVRKPSA-IPGDADSVGVEITR 113 (113)
T ss_dssp HHHTTTESEEEEEEEETTS-STSTSSEEEEEEEE
T ss_pred HHhCCCccEEEEEEECCcc-CcCCCCEEEEEEEC
Confidence 9999999999999999998 88778999999997
No 8
>cd00651 TFold Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA) , GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl tetrahydropterin synthetase (PTPS), and uricase (UO,uroate/urate oxidase). They bind to substrates belonging to the purine or pterin families, and share a fold-related binding site with a glutamate or glutamine residue anchoring the substrate and a lot of conserved interactions. They also share a similar oligomerization mode: several T-folds join together to form a beta(2n)alpha(n) barrel, then two barrels join together in a head-to-head fashion to made up the native enzymes. The functional enzyme is a tetramer for UO, a hexamer for PTPS, an octamer for DHNA/DHNTPE and a decamer for GTPCH-1. The substrate is located in a deep and narrow pocket at the interface between monomers. In PTPS, the active site is located at the interface of thr
Probab=99.94 E-value=1.5e-25 Score=155.32 Aligned_cols=116 Identities=34% Similarity=0.446 Sum_probs=108.5
Q ss_pred cCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 032783 9 GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIA 88 (134)
Q Consensus 9 ~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia 88 (134)
++.|+|+||++++.+|+++|||..+|++.+|++++++...++.+|++.+++||+.+++.+.++++++ +|+|++|+.|+
T Consensus 1 ~~~i~i~~l~~~~~~G~~~~e~~~~q~~~v~v~~~~~~~~~~~~d~l~~~i~y~~v~~~i~~~~~~~--~l~E~lae~i~ 78 (122)
T cd00651 1 TDGVRVKDLLKVTRLGFVTLERTVGQIFEVDVTLSWDGKKAAASDDVATDTVYNTIYRLAKEYVEGS--QLIERLAEEIA 78 (122)
T ss_pred CCEEEEEeeEEEEEECCCHHHHhcCCEEEEEEEEEecCchhhccCchhhhCCHHHHHHHHHHHHccc--CCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999876 99999999999
Q ss_pred HHHHhhCC-CceEEEEEEEcCCCCCC-----CCCCeEEEEEEEE
Q 032783 89 STTLTKYP-QISAVRVKVGKPHVAVE-----GSLDYLGIEILRH 126 (134)
Q Consensus 89 ~~i~~~~~-~i~~v~V~v~Kp~a~i~-----~~~~~vgV~i~r~ 126 (134)
..++..|+ .+.+++|+++||.++++ +..++++++++|+
T Consensus 79 ~~i~~~~~~~~~~v~v~v~k~~~~~~~~~~~~~~~~~~~~~~~~ 122 (122)
T cd00651 79 YLIAEHFLSSVAEVKVEEKKPHAVIPDRGVFKPTDSPGVTIERG 122 (122)
T ss_pred HHHHHhcccCceEEEEEEeCCCCCCCcccccccCCcEEEEEEEC
Confidence 99999987 68999999999999876 4678999998873
No 9
>KOG2544 consensus Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase [Coenzyme transport and metabolism]
Probab=99.59 E-value=7.2e-15 Score=122.08 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=109.4
Q ss_pred cCcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHH
Q 032783 7 MKGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAEL 86 (134)
Q Consensus 7 ~~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~ 86 (134)
.|.|.++|++|+.++.+|-..|.|..||++.+|+.|..|+++++.+|||+.|+||+.+.+.+.++++.+.|.+.-.||..
T Consensus 3 ~m~d~v~i~~l~~~tvlg~d~w~~~~pq~~~l~l~m~~~~~~s~~~ddlk~sl~y~v~sr~l~~~v~~~~~~s~~~l~~~ 82 (711)
T KOG2544|consen 3 GMRDYVHIKKLEMNTVLGPDSWNQLMPQKCLLSLDMGTDFSKSAATDDLKYSLNYAVISRDLTNFVSKKNWGSVSNLAKS 82 (711)
T ss_pred cccceEEEeeeecceeechhhhhhcCCcceEEEEecccchhhhccchhhhhhhhHHHHHHHHHHHhhhccCCCHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEEEe
Q 032783 87 IASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHR 127 (134)
Q Consensus 87 Ia~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r~r 127 (134)
|++++|.+|.+++.+.+++.-|...++. +..+.-+..+|
T Consensus 83 vs~~~~d~~~~~~~l~l~v~~~~~~irs--~~~~~~~~q~~ 121 (711)
T KOG2544|consen 83 VSQFVMDKYSGVECLNLEVQADTTHIRS--DHISCIIQQER 121 (711)
T ss_pred HHHHHHHhccCceeEEEEEecCceEEec--CcceeEeehhh
Confidence 9999999999999999999999988876 34444444433
No 10
>KOG2544 consensus Dihydropteroate synthase/7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase/Dihydroneopterin aldolase [Coenzyme transport and metabolism]
Probab=98.85 E-value=1.2e-09 Score=91.29 Aligned_cols=103 Identities=21% Similarity=0.293 Sum_probs=86.4
Q ss_pred cCcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHH
Q 032783 7 MKGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAEL 86 (134)
Q Consensus 7 ~~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~ 86 (134)
.--|.|.|.+|++-+.+|++.+||..+|.+.+|+.+.+....+ -.+.+.+.++++++.|.++|+|++.
T Consensus 127 ~~~d~v~~sel~m~tligv~tfer~~kq~v~l~i~~p~~~~~~------------l~i~r~v~~~vees~f~tieAlv~s 194 (711)
T KOG2544|consen 127 QEFDVVRISELKMLTLIGVFTFERLKKQYVTLDIKLPWPKKAE------------LPIIRNVVKFVEESNFKTIEALVES 194 (711)
T ss_pred cceeeEEeehhhHHHHHhHHHhhhhhceEEEEEEecCCchhhh------------hHHHHHHHHHHhcCCchhHHHHHHh
Confidence 3458999999999999999999999999999999997753321 1288999999999999999999999
Q ss_pred HHHHH-HhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEE
Q 032783 87 IASTT-LTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILR 125 (134)
Q Consensus 87 Ia~~i-~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r 125 (134)
+...+ |.+| -+...|++.||++ +.. ...+||.+.|
T Consensus 195 ~s~~icf~~y--~~~~svk~~kp~a-it~-t~~~~v~~~r 230 (711)
T KOG2544|consen 195 VSAVICFNEY--FQKFSVKVLKPNA-ITA-TEGVGVSCIR 230 (711)
T ss_pred hhHheehhhh--hcccceeeecccc-eee-eccccchhhh
Confidence 98876 4444 5777899999998 554 4788888877
No 11
>PF01014 Uricase: Uricase; InterPro: IPR002042 Uricase (1.7.3.3 from EC) (urate oxidase) [] is the peroxisomal enzyme responsible for the degradation of urate into allantoin: Urate + O2 + H2O = 5-hydroxyisourate + H2O2 Some species, like primates and birds, have lost the gene for uricase and are therefore unable to degrade urate []. Uricase is a protein of 300 to 400 amino acids, its sequence is well conserved. It is mainly localised in the liver, where it forms a large electron-dense paracrystalline core in many peroxisomes []. The enzyme exists as a tetramer of identical subunits, each containing a possible type 2 copper-binding site []. In legumes, 2 forms of uricase are found: in the roots, the tetrameric form; and, in the uninfected cells of root nodules, a monomeric form, which plays an important role in nitrogen-fixation [].; PDB: 1XY3_D 2FUB_A 3OBP_A 3LD4_A 3PK3_A 2IC0_A 3PLG_A 2PES_A 1XXJ_C 3CKU_A ....
Probab=95.55 E-value=0.048 Score=38.83 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=45.6
Q ss_pred hhCCCEEEEEEEEEecccccCCCCCCCCcccH-----HHHHHHHHHHHhCCC-hhhHHHHHHHHHHHHHhhCCCceEEEE
Q 032783 30 RTLGQKFVVDVDAWMDLRKAGKTDLLADTISY-----TAIYRIVKEIMEGPP-HNLLESVAELIASTTLTKYPQISAVRV 103 (134)
Q Consensus 30 r~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY-----~~l~~~I~~~~~~~~-f~llE~la~~Ia~~i~~~~~~i~~v~V 103 (134)
+..---..|++.+.+++..+... .+-.+| +..-..+..++.... -..+|.++..+++.++..||.|..|++
T Consensus 23 ~dri~~~~V~~~~~~~~~~~~~~---~dn~~~~~v~td~~kn~v~~fA~~~~~s~Svq~~~~~~~~~~L~~~p~V~~v~~ 99 (138)
T PF01014_consen 23 HDRIFETNVDVSWTGDFASSYTE---GDNSDFDAVATDTRKNTVYAFAKPHDYSPSVQQFLYLMGKHFLDRYPQVSEVRV 99 (138)
T ss_dssp SSEEEEEEEEEEEEECCHHHHHS---CSGCCHHHHHHHHHHHHHHHHHHHSH-BSSHHHHHHHHHHHHHHH-TTEEEEEE
T ss_pred CcEEEEEEEEEEEEEeccccccc---CCCCceeehHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 33334455555556555443311 122344 233333444443333 688999999999999999999999999
Q ss_pred EEEc
Q 032783 104 KVGK 107 (134)
Q Consensus 104 ~v~K 107 (134)
.+.-
T Consensus 100 ~~~n 103 (138)
T PF01014_consen 100 SMPN 103 (138)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8753
No 12
>COG1469 Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=0.93 Score=36.36 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=71.3
Q ss_pred cccCcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHH
Q 032783 5 EIMKGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVA 84 (134)
Q Consensus 5 ~~~~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la 84 (134)
....-+++-|+|++..+.|+-..- +|.+.-+.++.+|.... ..-+|-+.+.+.|.+.+++.+ .-||.++
T Consensus 15 ~~i~L~rVGi~~vk~pv~I~~~~~----~~~~i~tf~~~vDLP~~------~KGihMSR~~e~i~~~~~~~~-~~le~l~ 83 (289)
T COG1469 15 IPIPLDRVGITGVKKPVKIQTAGG----PQTTIATFDVFVDLPAE------QKGIHMSRLVELLEEVLEEGP-TELEFLC 83 (289)
T ss_pred cccccceecccCceEEEEEccCCC----cEEEEEEEEEEEeCchh------ccCcchHhHHHHHHHHHhccc-ccHHHHH
Confidence 334457889999999999985432 88888888888887543 346888999999999888765 6789999
Q ss_pred HHHHHHHHhhCCCceEEEEEEE
Q 032783 85 ELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 85 ~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
..|+..++.++.-..+++|.++
T Consensus 84 ~~i~~~ll~~~~~a~~A~V~~~ 105 (289)
T COG1469 84 LEIAKRLLSRHMYASRAEVEVR 105 (289)
T ss_pred HHHHHHHHHhhcccceeEEEEe
Confidence 9999999988755667777664
No 13
>cd00445 Uricase Urate oxidase (UO, uricase) is a peroxisomal enzyme that catalyzes the oxidation of uric acid to allantoin in most fish, amphibian, and mammalian species. The enzymatic process involves catalyzing the oxidative opening of the purine ring during the purine degradation pathway. In humans and certain other primates, however, the enzyme has been lost by some unknown mechanism. Each monomer contains two instances of this domain. Its functional form is a homotetramer for most species, though there are reports that some may form heterotetramers based on a few biochemical studies.
Probab=93.16 E-value=0.56 Score=37.58 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=58.5
Q ss_pred CEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhCCCceEEEEEEE
Q 032783 34 QKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 34 Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
..+.|++.|.-++..+....|=+..|-=+.+-+.|..++++.....+|.+|..|++.-+..||.|..++|.+.
T Consensus 24 ~e~~V~v~L~Gd~~~syt~gDNs~vVaTDt~KNTvy~~Ak~~~~~s~E~Fa~~L~~HF~~~y~hv~~a~v~i~ 96 (286)
T cd00445 24 VEVNVGVSLGGDFLTSYTEGDNSDIVATDTIKNTVYVLAKEYGITSIEEFAIILATHFLSKYSHVTGAHVNIE 96 (286)
T ss_pred EEEEEEEEEeecchhhhhcCcCCccccccchHHHHHHHHHHCCCCCHHHHHHHHHHHHcccCCCeEEEEEEEE
Confidence 3455566666666666555555667777788899999999888999999999999999999999999988875
No 14
>TIGR03383 urate_oxi urate oxidase. Members of this protein family are urate oxidase, also called uricase. This protein contains two copies of the domain described by the uricase model pfam01014. In animals, this enzyme has been lost from primates and birds.
Probab=93.13 E-value=0.57 Score=37.44 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=59.9
Q ss_pred CCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhCCCceEEEEEEE
Q 032783 33 GQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 33 ~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
-..+.|++.|.-++..+....|=+..|-=+.+-+.|..++++.....+|.+|..|++.-+..||.|..++|.+.
T Consensus 26 i~e~~V~v~L~Gd~~~syt~gDNs~vvaTDT~KNtvy~~Ak~~~~~s~E~Fa~~l~~HF~~~y~~V~~a~v~i~ 99 (282)
T TIGR03383 26 IKELNVSVLLRGDFEASYTEGDNSDVVATDTQKNTVYALAKEHGVTSIEEFAIALAKHFLDTYSHVTGARVEIE 99 (282)
T ss_pred EEEEEEEEEEeecchhhhhcCcCCccccccchHHHHHHHHHHCCCCCHHHHHHHHHHHHcccCCCeEEEEEEEE
Confidence 34455666666677666655555677777888999999999888999999999999999999999999998875
No 15
>PLN02415 uricase
Probab=92.30 E-value=0.91 Score=36.68 Aligned_cols=73 Identities=21% Similarity=0.177 Sum_probs=57.4
Q ss_pred CEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHHHHhhCCCceEEEEEEE
Q 032783 34 QKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPP-HNLLESVAELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 34 Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~-f~llE~la~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
..+.|++.|.-++..+....|=+..|-=+.+-+.|..+++... ...+|.+|..|++.-+..||.|..++|++.
T Consensus 32 ~e~~V~v~L~Gd~~~syt~gDNs~VVaTDT~KNTVy~~Ak~~~~v~s~E~Fa~~L~~HF~~~y~hV~~a~v~i~ 105 (304)
T PLN02415 32 VEWNVSISLLSDCLPAYVRDDNSDIVATDTIKNTVYVKAKECTQRLSVEEFAILLAKHFTSTYPQVTTAIVSIE 105 (304)
T ss_pred EEEEEEEEEeecchhheecCCCCccccccchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCeEEEEEEEE
Confidence 3455566666666666555555667777788889999888654 999999999999999999999999999875
No 16
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=88.56 E-value=6.1 Score=27.07 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=59.1
Q ss_pred CeEEEEEecCCc----hhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhC----------CCh----
Q 032783 16 GLRFHGFHGVKK----EERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEG----------PPH---- 77 (134)
Q Consensus 16 ~L~~~~~iGv~~----~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~----------~~f---- 77 (134)
...|.+-|.+.. -++..|-.+.|.+.+.-+. .|+-.-.+|+..+-+.++++.+. ..|
T Consensus 5 ~~~f~aaH~l~~~~g~c~~lHGH~y~v~v~v~g~~-----~~~~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~ 79 (123)
T PF01242_consen 5 KFKFSAAHRLPGHDGKCERLHGHSYRVEVEVEGEE-----LDEDGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDIN 79 (123)
T ss_dssp EEEEEEEE--TTTTGGGGSSEEEEEEEEEEEEEES-----STTTSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSST
T ss_pred EEEEEeEEecCCCCCCcccccCCEEEEEEEEEEee-----CCCCCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccC
Confidence 488999999883 3677788888888887642 34456788999999988875541 223
Q ss_pred -hhHHHHHHHHHHHHHhhC--CCceEEEEEEE
Q 032783 78 -NLLESVAELIASTTLTKY--PQISAVRVKVG 106 (134)
Q Consensus 78 -~llE~la~~Ia~~i~~~~--~~i~~v~V~v~ 106 (134)
-+.|.+|..|++.+...+ +++.-++|++.
T Consensus 80 ~pT~E~lA~~i~~~l~~~l~~~~~~l~~V~v~ 111 (123)
T PF01242_consen 80 NPTAENLARWIFERLKEKLSPPGVRLVKVEVY 111 (123)
T ss_dssp S--HHHHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcccccEEEEEEEE
Confidence 379999999999987766 34566666665
No 17
>PRK13675 GTP cyclohydrolase; Provisional
Probab=86.77 E-value=15 Score=29.70 Aligned_cols=91 Identities=13% Similarity=0.146 Sum_probs=62.8
Q ss_pred cCcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhC-CChhh--HHHH
Q 032783 7 MKGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEG-PPHNL--LESV 83 (134)
Q Consensus 7 ~~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~-~~f~l--lE~l 83 (134)
...+++-|+|+++...+.-.. ..+|.+.-.+++..+.... ..-++-+.+++.+.+...+ -.... +|.|
T Consensus 16 i~l~~VGi~~i~~Pi~i~~~~---~~~~~~~a~~~~~VdLp~~------~KGiHMSR~~e~L~~~~~~~l~~~~~~~~~l 86 (308)
T PRK13675 16 IGLTRVGVTNVKKLVKIKRKG---KRPIVLIPTFEVFVDLPSD------RKGIHMSRNVEVIDEVLEEAVEEEVYEIEDL 86 (308)
T ss_pred CCCceeCcCCceEeEEEeeCC---CceeEEEEEEEEEEeCChh------cccccHHHHHHHHHHhhhcccCcccccHHHH
Confidence 346788999999998886422 3577888788888776532 3456778888888876442 22233 9999
Q ss_pred HHHHHHHHHhhCCCceEEEEEEE
Q 032783 84 AELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 84 a~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
+..+++.+.....-..++.|+++
T Consensus 87 ~~~l~~~l~~~~~~a~~A~V~~~ 109 (308)
T PRK13675 87 CGDIAKRLLEKHEYATRAEVRMR 109 (308)
T ss_pred HHHHHHHHHhccCCccEEEEEEE
Confidence 99999999876532455555554
No 18
>PF02649 GCHY-1: Type I GTP cyclohydrolase folE2; InterPro: IPR003801 This entry represents GTP cyclohydrolases belonging to family IV. In bacteria GTP cyclohydrolase FolE2 converts GTP to 7,8-dihydroneopterin triphosphate; while in the archaea GTP cyclohydrolase MptA converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate, the first intermediate in the biosynthesis of coenzyme methanopterin. ; PDB: 2R5R_A 3D1T_A 3D2O_B.
Probab=85.64 E-value=9.8 Score=30.21 Aligned_cols=89 Identities=21% Similarity=0.285 Sum_probs=58.9
Q ss_pred CcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhC--CChhhHHHHHH
Q 032783 8 KGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEG--PPHNLLESVAE 85 (134)
Q Consensus 8 ~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~--~~f~llE~la~ 85 (134)
.-+++-|+|+++...+.-.+. ...|.+.-.+++..+.... ..-++-+.+++.+.++... -.+..+|.++.
T Consensus 14 ~L~~VGi~~i~~PI~i~~~~~--~~~~~~~a~~~~~VdLp~~------~KGiHMSR~~e~l~e~~~~~~~~~~~l~~ll~ 85 (276)
T PF02649_consen 14 PLDRVGIKGIRYPIRIKDKDG--GGPQHTVAEFDMYVDLPAD------QKGIHMSRFVEVLNELLEEGELSPESLEDLLE 85 (276)
T ss_dssp -ECEEEEEEEEEEEEEEETT---TCEEEEEEEEEEEEEC-TT--------GGGCHHHHHHHH--HS-SSECHHHHHHHHH
T ss_pred CCCeeccCCceEeEEEeecCC--CCcceeEEEEEEEEECCcc------cccccHHHHHHHHhhhccCCccCHHHHHHHHH
Confidence 347889999999998875421 4567888888888776532 4557778899999877543 47899999999
Q ss_pred HHHHHHHhhCCCceEEEEEEE
Q 032783 86 LIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 86 ~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
++++.++..+ ..+..|+++
T Consensus 86 ~~~~~l~~~~--a~~a~v~~~ 104 (276)
T PF02649_consen 86 EMLERLLDKY--ARRAEVELR 104 (276)
T ss_dssp HHHHHT---T---SEEEEEEE
T ss_pred HHHHHhcCcc--CCeEEEEEE
Confidence 9999997662 455555543
No 19
>cd00445 Uricase Urate oxidase (UO, uricase) is a peroxisomal enzyme that catalyzes the oxidation of uric acid to allantoin in most fish, amphibian, and mammalian species. The enzymatic process involves catalyzing the oxidative opening of the purine ring during the purine degradation pathway. In humans and certain other primates, however, the enzyme has been lost by some unknown mechanism. Each monomer contains two instances of this domain. Its functional form is a homotetramer for most species, though there are reports that some may form heterotetramers based on a few biochemical studies.
Probab=83.75 E-value=8.4 Score=30.94 Aligned_cols=90 Identities=26% Similarity=0.413 Sum_probs=55.8
Q ss_pred EeCeEEE-----EEecCCchhhhC-----CCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhC----C----
Q 032783 14 LRGLRFH-----GFHGVKKEERTL-----GQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEG----P---- 75 (134)
Q Consensus 14 I~~L~~~-----~~iGv~~~Er~~-----~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~----~---- 75 (134)
|+||.+- .+.|...-|-.. --.+..+++..+.+.... +-.....||...++.+++.+-+ .
T Consensus 140 i~dL~vLKsT~S~F~GF~rDeYTTLpet~DRilaT~v~a~W~y~~~~--~~~~~~~df~~~~~~vr~~~l~~Fa~~~~~~ 217 (286)
T cd00445 140 IKGLSVLKTTQSGFEGFLRDEYTTLPETRDRILATYVTASWRYSNTE--DSPAKSPDFDAAWEQVRDILLDTFAGPPDVG 217 (286)
T ss_pred ccccEEEeecCccccccccCCcccCCCcccceEEEEEEEEEEECCcc--cccccccchHHHHHHHHHHHHHHhcCCcccC
Confidence 5566553 345544444222 235778888877663221 1122345666666666655432 1
Q ss_pred -ChhhHHHHHHHHHHHHHhhCCCceEEEEEE
Q 032783 76 -PHNLLESVAELIASTTLTKYPQISAVRVKV 105 (134)
Q Consensus 76 -~f~llE~la~~Ia~~i~~~~~~i~~v~V~v 105 (134)
.=..+-.....+++.++..+|+|..|++++
T Consensus 218 ~~S~SvQ~TlY~mg~~vL~~~P~i~~V~~~~ 248 (286)
T cd00445 218 VYSPSVQHTLYLMAKQILDRFPQISSVSFQM 248 (286)
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCeeEEEEEC
Confidence 225677778999999999999999998876
No 20
>TIGR03383 urate_oxi urate oxidase. Members of this protein family are urate oxidase, also called uricase. This protein contains two copies of the domain described by the uricase model pfam01014. In animals, this enzyme has been lost from primates and birds.
Probab=82.12 E-value=13 Score=29.86 Aligned_cols=88 Identities=20% Similarity=0.379 Sum_probs=55.7
Q ss_pred EeCeEE-----EEEecCCchhhhC-----CCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHH----hCCChhh
Q 032783 14 LRGLRF-----HGFHGVKKEERTL-----GQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIM----EGPPHNL 79 (134)
Q Consensus 14 I~~L~~-----~~~iGv~~~Er~~-----~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~----~~~~f~l 79 (134)
|+||.+ ..+.|...-|-.. --.+..+++..+.+... + -....||....+.+++.+ .+..=..
T Consensus 143 i~dL~vLKtT~S~F~gF~rDeYTTLpet~DRilaT~v~a~W~y~~~---~-~~~~~df~~~~~~vr~~~l~~Fa~~~S~S 218 (282)
T TIGR03383 143 IKDLTVLKTTGSGFVGFIRDEYTTLPETTDRILATDVTARWRYNNF---L-DATGVDFDAAYEQVRDILLDTFAETYSPS 218 (282)
T ss_pred ccccEEEeecCccccccccCCcccCCCcccceEEEEEEEEEEECCc---c-cccccChHHHHHHHHHHHHHHhcCCCCHH
Confidence 566665 3455655444322 23567888887766321 0 112345776666666544 3333366
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEE
Q 032783 80 LESVAELIASTTLTKYPQISAVRVKV 105 (134)
Q Consensus 80 lE~la~~Ia~~i~~~~~~i~~v~V~v 105 (134)
+-.....+++.++..+|+|..|++++
T Consensus 219 vQ~TlY~mg~~vL~~~P~i~~V~~~~ 244 (282)
T TIGR03383 219 VQNTLYLMGKAVLERFPEVEEVSLSM 244 (282)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEC
Confidence 77778999999999999999998876
No 21
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=81.70 E-value=15 Score=25.44 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=59.1
Q ss_pred CeEEEEEecCC----chhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhC-------------CChh
Q 032783 16 GLRFHGFHGVK----KEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEG-------------PPHN 78 (134)
Q Consensus 16 ~L~~~~~iGv~----~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~-------------~~f~ 78 (134)
..+|.+-|=+. +-++..|-.+.+.+.+.-+ ..|+-.-.+||..|.+.+.+.+.. ...-
T Consensus 7 ~~~F~aaH~l~~~~g~c~~lHGH~y~v~v~v~g~-----~~~~~G~viDf~~lk~~~~~~~~~~lDH~~Ln~~~~~~~~p 81 (124)
T TIGR00039 7 EFSFSAAHRLPGHEGKCGNLHGHSYKVDVEVSGE-----RDPKTGMVMDFSDLKKIVKEVIDEPLDHKLLNDDVNYLENP 81 (124)
T ss_pred EEEEeCCCCcCCCCCCCCCccCCcEEEEEEEEEe-----eCCCceEEEEHHHHHHHHHHHhccCCCCceeccCCCCCCCC
Confidence 34555555433 2457888899999988753 134556789999999999888764 1124
Q ss_pred hHHHHHHHHHHHHHhhC-CCceEEEEEEE
Q 032783 79 LLESVAELIASTTLTKY-PQISAVRVKVG 106 (134)
Q Consensus 79 llE~la~~Ia~~i~~~~-~~i~~v~V~v~ 106 (134)
+.|.+|..|.+.+-... +.+.-++|+|.
T Consensus 82 T~Enia~~i~~~l~~~l~~~~~~~~V~v~ 110 (124)
T TIGR00039 82 TSENVAVYIFDNLKEYLIPVENLVKVKEE 110 (124)
T ss_pred CHHHHHHHHHHHHHHhcCCCCeEEEEEEE
Confidence 78999999999887653 34555666664
No 22
>COG3648 Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.45 E-value=19 Score=28.63 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=49.1
Q ss_pred CCEEEEEEEEEecccccCCCCC--CCCcccHHHHHHHHHHHHh----CCChhhHHHHHHHHHHHHHhhCCCceEEEEEE
Q 032783 33 GQKFVVDVDAWMDLRKAGKTDL--LADTISYTAIYRIVKEIME----GPPHNLLESVAELIASTTLTKYPQISAVRVKV 105 (134)
Q Consensus 33 ~Q~v~vdl~l~~~~~~a~~~Dd--l~~tvdY~~l~~~I~~~~~----~~~f~llE~la~~Ia~~i~~~~~~i~~v~V~v 105 (134)
-.++.+.+.+.+.+.. .|| -.+..||..+.+.+.+++. ......|-.+...++.+|+..||++..|....
T Consensus 184 dR~l~t~ln~~w~yen---~~d~~a~~~~dy~a~~EqV~~ia~~tF~e~~spSiQ~tlY~mg~~il~~~Pqi~ev~fq~ 259 (299)
T COG3648 184 DRPLFTYLNAKWEYEN---FDDFEAVEPCDYVAAWEQVYRIAQTTFHEHYSPSIQNTLYLMGERILSRFPQISEVSFQS 259 (299)
T ss_pred CcceEEEEeeEEEeec---CccccccCccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhCcchheeeeeC
Confidence 3566677777664421 222 2356788888777777654 34457789999999999999999998887654
No 23
>PLN02415 uricase
Probab=70.44 E-value=41 Score=27.28 Aligned_cols=89 Identities=21% Similarity=0.394 Sum_probs=55.3
Q ss_pred EeCeEEE-----EEecCCchhhhC-----CCEEEEEEEEEecccccCCCCCC-CCcccHHHHHHHHHH----HH-----h
Q 032783 14 LRGLRFH-----GFHGVKKEERTL-----GQKFVVDVDAWMDLRKAGKTDLL-ADTISYTAIYRIVKE----IM-----E 73 (134)
Q Consensus 14 I~~L~~~-----~~iGv~~~Er~~-----~Q~v~vdl~l~~~~~~a~~~Ddl-~~tvdY~~l~~~I~~----~~-----~ 73 (134)
|+||.+- .+.|...-|-.. --.+..+++..+.+.. .+.+ ..-.||....+.+++ .+ .
T Consensus 148 i~dL~vLKtT~S~F~GF~rDeYTTLpet~DRilaT~v~a~W~y~~---~~~~~~~~~df~~~~~~vr~~ll~~Fag~~~~ 224 (304)
T PLN02415 148 ITGLSLLKTTQSGFEGFIRDKYTALPETRERILATEVTASWRYSS---VSSIPTKPLCYTEAYLDVKKVLADTFFGPPKS 224 (304)
T ss_pred ccceEEEeecCccccccccCCcccCCCcccceEEEEEEEEEEEcc---ccccccCccchHHHHHHHHHHHHHHhcCCccc
Confidence 5566553 355554444332 2357788888776631 1111 223577777766665 33 1
Q ss_pred CCChhhHHHHHHHHHHHHHhhCCCceEEEEEE
Q 032783 74 GPPHNLLESVAELIASTTLTKYPQISAVRVKV 105 (134)
Q Consensus 74 ~~~f~llE~la~~Ia~~i~~~~~~i~~v~V~v 105 (134)
+..=..+-.....+++.+++.+|+|..|++++
T Consensus 225 ~~~S~SvQ~TlY~m~~~iL~~~P~i~~V~~~l 256 (304)
T PLN02415 225 GVYSPSVQYTLYQMAKAVLNRFPDISSIQLNM 256 (304)
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCceEEEEEC
Confidence 22235677888999999999999999998765
No 24
>PRK13258 7-cyano-7-deazaguanine reductase; Provisional
Probab=67.54 E-value=38 Score=23.39 Aligned_cols=99 Identities=7% Similarity=-0.026 Sum_probs=70.3
Q ss_pred cCcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHH
Q 032783 7 MKGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAEL 86 (134)
Q Consensus 7 ~~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~ 86 (134)
...+.|.+++.+|.+..=++ +||..=.+.+.+... ...+-...+..-+..+... ....|.++++
T Consensus 13 ~~~~~V~~~~~ef~S~Cp~t------g~Pd~g~~~I~Y~P~--------~~iielkSLk~Yl~Sf~~~--~~~qE~lt~~ 76 (114)
T PRK13258 13 GRDYTIRITLPEFTSLCPKT------GQPDFATIVIDYIPD--------KKCVELKSLKLYLFSFRNH--GIFHEDCTNR 76 (114)
T ss_pred CCceEEEEECCCEEEcCCCC------CCCeEEEEEEEEeCC--------CCEEcHHHHHHHHHHHHCC--CchHHHHHHH
Confidence 34467889999999877665 888888888887532 4567777777777776543 3899999999
Q ss_pred HHHHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEEEeC
Q 032783 87 IASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHRS 128 (134)
Q Consensus 87 Ia~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r~r~ 128 (134)
|++.|.+.. .-.+++|...=- + + +++.+.+.+...
T Consensus 77 I~~dL~~~l-~p~~l~v~~~~~--~-R---Ggi~~~~~~~~~ 111 (114)
T PRK13258 77 ILDDLVALL-DPRWLRVGGDFN--P-R---GGIHTDVFANYG 111 (114)
T ss_pred HHHHHHHhh-CCCEEEEEEEEE--C-c---CCEEEEEEEEcC
Confidence 999998764 457777776532 2 2 346666666543
No 25
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=58.47 E-value=49 Score=21.58 Aligned_cols=70 Identities=20% Similarity=0.276 Sum_probs=46.9
Q ss_pred eEEEEEecCC----chhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhC--C-------Ch--hhHH
Q 032783 17 LRFHGFHGVK----KEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEG--P-------PH--NLLE 81 (134)
Q Consensus 17 L~~~~~iGv~----~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~--~-------~f--~llE 81 (134)
..|.+-|-+. ..++..|-.+.|.+++.-+. .|+..-.+||..|-+.+..+.+. . .| -+.|
T Consensus 6 ~~f~aaH~l~~~~g~c~~lHGH~y~v~v~~~~~~-----l~~~g~v~Df~~lk~~~~~i~~~lDh~~Lne~~~~~~pT~E 80 (92)
T TIGR03367 6 FTFDAAHRLPGYPGKCANLHGHTYKVEVTVSGEV-----LDEAGMVMDFSDLKAIVKEVVDRLDHALLNDVPGLENPTAE 80 (92)
T ss_pred EEEEeeeEcCCCCCCccCcCCccEEEEEEEEEee-----cCCccEEEEHHHHHHHHHHHHHhCCCcEeeCCCCCCCCCHH
Confidence 3555555444 34778899999999987532 34456789999999888876653 1 12 3667
Q ss_pred HHHHHHHHHH
Q 032783 82 SVAELIASTT 91 (134)
Q Consensus 82 ~la~~Ia~~i 91 (134)
.+|..|.+.+
T Consensus 81 ~ia~~i~~~l 90 (92)
T TIGR03367 81 NLARWIYDRL 90 (92)
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 26
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=56.80 E-value=24 Score=21.93 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHhhCCCceEEEEEEEcCC
Q 032783 78 NLLESVAELIASTTLTKYPQISAVRVKVGKPH 109 (134)
Q Consensus 78 ~llE~la~~Ia~~i~~~~~~i~~v~V~v~Kp~ 109 (134)
..+|+|-.++.++|...||. +.|+|++-+
T Consensus 4 ga~~AL~~EL~kRl~~~yPd---~~v~Vr~~s 32 (65)
T PF06183_consen 4 GALEALESELTKRLHRQYPD---AEVRVRPGS 32 (65)
T ss_dssp THHHHHHHHHHHHHHHH-SS----EEEEEEES
T ss_pred cHHHHHHHHHHHHHHHHCCC---ceEeeeecc
Confidence 57899999999999999996 556666544
No 27
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=49.90 E-value=26 Score=29.92 Aligned_cols=34 Identities=15% Similarity=0.181 Sum_probs=29.5
Q ss_pred hCCChhhHHHHHHHHHHHHHhhCCCceEEEEEEE
Q 032783 73 EGPPHNLLESVAELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 73 ~~~~f~llE~la~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
.++.|+.+++++.-+.....++||.|++++|++-
T Consensus 120 ~~KGf~sl~hIGk~l~~~~K~EfpiVekvqVt~i 153 (463)
T PRK04456 120 HAKGLRSLEHIGKALMMLFKNELPFIEKIQVTII 153 (463)
T ss_pred HhhhhhHHHHHHHHHHHHHHhhcccceeEEEEEE
Confidence 3455788999999999999999999999999874
No 28
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.85 E-value=1.6e+02 Score=24.50 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=64.7
Q ss_pred hCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChh---------------------------hHHHH
Q 032783 31 TLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHN---------------------------LLESV 83 (134)
Q Consensus 31 ~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~---------------------------llE~l 83 (134)
..+|++.+-=-...+.......| ...+||..+.+.+++...+...+ =||..
T Consensus 29 ~~g~~~kLe~y~~~~lp~~iv~d--g~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~aitk~i~vp~~lde~eL~~~ 106 (354)
T COG4972 29 RSGNRYKLEKYASEPLPENIVAD--GKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAITKTIPVPDELDEKELEDQ 106 (354)
T ss_pred ccCCceeeeeeeecccCcccccc--CCcccHHHHHHHHHHHHHhcCcchhhhhhhcCccceeeEEeccCCcccHHHHHHH
Confidence 35677776655555555555555 57899999999999988764432 25555
Q ss_pred HHHHHHHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEEEEeCC
Q 032783 84 AELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEILRHRSV 129 (134)
Q Consensus 84 a~~Ia~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~r~r~~ 129 (134)
.++=|...+ .|| ++.+.+--.|..++-.+. +.++|.+..+|.+
T Consensus 107 V~~ea~~y~-PyP-~EEv~lDy~vlg~~~~~~-e~v~Vll~AtrkE 149 (354)
T COG4972 107 VESEASRYI-PYP-LEEVNLDYQVLGPSANEP-EKVQVLLVATRKE 149 (354)
T ss_pred HHHHHhhcC-CCc-hhhcccceEEeccccCCC-ccEEEEEEEeehh
Confidence 554444433 366 789999888888765544 6799999888864
No 29
>PRK13674 putative GTP cyclohydrolase; Provisional
Probab=48.47 E-value=1.4e+02 Score=23.77 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=57.0
Q ss_pred cCcCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHh-CCChhhHHHHHH
Q 032783 7 MKGDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIME-GPPHNLLESVAE 85 (134)
Q Consensus 7 ~~~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~-~~~f~llE~la~ 85 (134)
..-+++-|+|+++...+.-.. ...|.+.-.+++..+.... ..-++-+.+++.+.++.. .-....++.
T Consensus 21 i~l~~VGi~~i~~Pi~v~~~~---~~~q~~~a~~~~~VdLp~~------~KGiHMSR~~e~L~~~~~~~l~~~~l~~--- 88 (271)
T PRK13674 21 IPIDWVGIKNIRLPVRVDTRD---GGTQTTVARVDLTVSLPAD------FKGIHMSRLYELLEEHAEQELSPASLEQ--- 88 (271)
T ss_pred CCCceeCcCCceEEEEEEcCC---CCeEEEEEEEEEEEeCCcc------ccccchhHHHHHHHHhhccccCHHHHHH---
Confidence 345788899999999885432 3378888888888887432 345677888888888765 344555554
Q ss_pred HHHHHHHhhCCCceEEEEEEE
Q 032783 86 LIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 86 ~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
+++.++..+. ..+..|++.
T Consensus 89 -il~~~l~~~~-a~~a~v~~~ 107 (271)
T PRK13674 89 -LLRDMLESLE-SRAARIEVS 107 (271)
T ss_pred -HHHHHHHhcC-CCEEEEEEE
Confidence 4455554443 455555544
No 30
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=45.25 E-value=40 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=22.7
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCce-EEEEE
Q 032783 76 PHNLLESVAELIASTTLTKYPQIS-AVRVK 104 (134)
Q Consensus 76 ~f~llE~la~~Ia~~i~~~~~~i~-~v~V~ 104 (134)
+-..+++|..++.++|...||.+. .|+|+
T Consensus 14 p~ga~~AL~~EL~kRl~~~fPd~~~~v~Vr 43 (81)
T PRK10597 14 PAGAIDALAGELSRRIQYAFPDNEGHVSVR 43 (81)
T ss_pred ChhHHHHHHHHHHHHHHhhCCCCCccEEEe
Confidence 347899999999999999999654 45544
No 31
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=44.53 E-value=1e+02 Score=21.08 Aligned_cols=70 Identities=7% Similarity=0.122 Sum_probs=49.0
Q ss_pred chhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhC---------CCh----hhHHHHHHHHHHHHHh
Q 032783 27 KEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEG---------PPH----NLLESVAELIASTTLT 93 (134)
Q Consensus 27 ~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~---------~~f----~llE~la~~Ia~~i~~ 93 (134)
+-++..|-.+.+.+.+.-+. ...+|+..|-+.+.+..+. ..| -+.|.+|..|.+.+..
T Consensus 18 kc~~lHGHty~vev~v~g~~---------~g~vDf~~lk~~l~~v~~~~DH~~LNdv~~f~~~~PTaEniA~~i~~~l~~ 88 (113)
T TIGR03112 18 VRGNKHPHTWEITIFVIKKE---------DKFILFNDVEKKVEKYLKPYQNKYLNDLEPFDKINPTLENIGDYFFDEIKK 88 (113)
T ss_pred CcCCcCCCcEEEEEEEEecC---------CeEEEHHHHHHHHHHHHHcCCCceeccCCccCCCCCCHHHHHHHHHHHHHH
Confidence 44677888999999987532 2358999998888776653 112 4899999999999877
Q ss_pred hCCC--ceEEEEEE
Q 032783 94 KYPQ--ISAVRVKV 105 (134)
Q Consensus 94 ~~~~--i~~v~V~v 105 (134)
..+. +.-.+|+|
T Consensus 89 ~l~~~~~~l~~V~l 102 (113)
T TIGR03112 89 LLKEKGWKLHSIEI 102 (113)
T ss_pred hhccCCceEEEEEE
Confidence 6542 34445555
No 32
>COG0720 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
Probab=43.69 E-value=1.1e+02 Score=21.29 Aligned_cols=78 Identities=21% Similarity=0.281 Sum_probs=56.1
Q ss_pred EeCeEEEEEe---cCCc-hhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhC---------CC----
Q 032783 14 LRGLRFHGFH---GVKK-EERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEG---------PP---- 76 (134)
Q Consensus 14 I~~L~~~~~i---Gv~~-~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~---------~~---- 76 (134)
-..++|.|-| |... ..|..|-.+.|.|++.-+.. |+=.-.+||..|-..++.+.++ ..
T Consensus 6 ~~~f~F~AaH~l~~~~~kC~~lHGHty~veV~i~ge~~-----d~~Gmv~DF~~lk~~~k~i~~~~DH~~Ln~~~~~~~~ 80 (127)
T COG0720 6 TKRFSFDAAHRLPGHPGKCGRLHGHTYKVEVEIEGEEL-----DEHGMVVDFGELKKAVKEILDELDHKLLNDIEEFDKE 80 (127)
T ss_pred EEEEEEecccccCCCCCcccCCcCcceEEEEEEEEeee-----cCCCEEEEHHHHHHHHHHhhhccChHhhcCCcccccc
Confidence 3456666643 3444 78899999999999986422 1114589999999777766642 22
Q ss_pred hhhHHHHHHHHHHHHHhhCC
Q 032783 77 HNLLESVAELIASTTLTKYP 96 (134)
Q Consensus 77 f~llE~la~~Ia~~i~~~~~ 96 (134)
.-+.|.+|..+.+.+...+|
T Consensus 81 ~pt~E~~a~~i~~~~~~~l~ 100 (127)
T COG0720 81 NPTAENIAKWIFDRLKVVLP 100 (127)
T ss_pred CchHHHHHHHHHHHHHHhcC
Confidence 37899999999999988877
No 33
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.73 E-value=1.2e+02 Score=21.04 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=26.0
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCceEEEEEEE
Q 032783 76 PHNLLESVAELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 76 ~f~llE~la~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
+-.+.|.|...|-+.++.+ |.+..+.|+|.
T Consensus 35 s~~~a~~le~aI~esi~~Q-P~v~daeV~Id 64 (116)
T COG2098 35 SPGTAESLEKAIEESIKVQ-PFVEDAEVKID 64 (116)
T ss_pred CccchHHHHHHHHHHHhcC-CceeeEEEEec
Confidence 3567899999999999987 88999999998
No 34
>PHA02094 hypothetical protein
Probab=37.97 E-value=69 Score=20.30 Aligned_cols=38 Identities=24% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEE
Q 032783 80 LESVAELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEIL 124 (134)
Q Consensus 80 lE~la~~Ia~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~ 124 (134)
-|.++..|.+.+-+.+|. .+--|.||+|+ + ++|-|+|.
T Consensus 43 ye~~~ksig~m~g~~hpt---aktwvakpnpf-r---dgvlveir 80 (81)
T PHA02094 43 YEFFAKSVGAMIGELHPT---AKTWVAKPNPF-R---DGVLVEIR 80 (81)
T ss_pred HHHHHHHHHHHhcccCcc---ccccccCCCCC-c---cceEEeec
Confidence 588999999998877774 34457899975 3 45777763
No 35
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=36.70 E-value=56 Score=27.92 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHHHHHhhCCCceEEEEEEE
Q 032783 75 PPHNLLESVAELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 75 ~~f~llE~la~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
+.|+ ++++++-+.....++||.|+++.|++-
T Consensus 120 KGf~-l~hIGkvL~~~~K~efpiVdkvqVtfi 150 (458)
T TIGR00316 120 KGLR-LKHIGKAVMMLFKEEFPFIEKIEVTII 150 (458)
T ss_pred cCCC-HHHHHHHHHHHHHhhcccceeEEEEEE
Confidence 4466 999999999999999999999999875
No 36
>COG3648 Uricase (urate oxidase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.53 E-value=1.5e+02 Score=23.68 Aligned_cols=72 Identities=8% Similarity=0.027 Sum_probs=51.7
Q ss_pred EEEEEEEEe--cccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhCCCceEEEEEEEc
Q 032783 36 FVVDVDAWM--DLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIASTTLTKYPQISAVRVKVGK 107 (134)
Q Consensus 36 v~vdl~l~~--~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~~i~~~~~~i~~v~V~v~K 107 (134)
+..|+.+.+ ++..+...-|=...|-=+...+.|..++++..-.++|.++..||..-+..|+.|..+.+..+-
T Consensus 37 ~emdv~~al~G~f~~S~TdgDNtlvVaTDtmKNtIy~~ak~~~~St~E~F~~~lakhFvdty~hi~g~~l~~t~ 110 (299)
T COG3648 37 REMDVRVALYGAFLASFTDGDNTLVVATDTMKNTIYRLAKEGFGSTIEEFLKELAKHFVDTYSHITGGFLEGTE 110 (299)
T ss_pred EEeeEEEEecccchhhhccCCcceEEecchhHHHHHHHHHhcCCCcHHHHHHHHHHHHhhhcCccceeeecccc
Confidence 445555544 333332223334566667788999999988877899999999999999999988888877653
No 37
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=33.93 E-value=2.1e+02 Score=21.74 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=55.0
Q ss_pred CEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 032783 10 DKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIAS 89 (134)
Q Consensus 10 d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~ 89 (134)
+.|.++|+.|+...=-+ --||.=.+.+.|-. + ...+--+.|.+.+.-++ ++..+.|+|+.+||+
T Consensus 78 ~mViv~~I~f~S~CEHH------LLPf~G~~hVaYiP------~--~~VvGLSKl~RiV~~~a--rRlQvQERLT~qIa~ 141 (201)
T PRK12606 78 EMVIVRDIELYSLCEHH------LLPFIGVAHVAYLP------G--GKVLGLSKIARIVDMFA--RRLQIQENLTRQIAT 141 (201)
T ss_pred cEEEEeCceEEEecccc------ccceeeEEEEEEeC------C--CccccHHHHHHHHHHHh--cCchHHHHHHHHHHH
Confidence 56788999888764322 56777777776621 1 45677888888887775 458999999999999
Q ss_pred HHHhhCCCceEEEEEE
Q 032783 90 TTLTKYPQISAVRVKV 105 (134)
Q Consensus 90 ~i~~~~~~i~~v~V~v 105 (134)
.|.+.. +...|-|.+
T Consensus 142 ~l~~~l-~p~GVaV~i 156 (201)
T PRK12606 142 AVVTVT-QARGAAVVI 156 (201)
T ss_pred HHHHhh-CCCcEEEEE
Confidence 998653 234444444
No 38
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=32.51 E-value=1.8e+02 Score=20.40 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=48.0
Q ss_pred hhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHH-hC---------CC-----hhhHHHHHHHHHHHHHhh
Q 032783 30 RTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIM-EG---------PP-----HNLLESVAELIASTTLTK 94 (134)
Q Consensus 30 r~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~-~~---------~~-----f~llE~la~~Ia~~i~~~ 94 (134)
+..|-.+.|.+.+.-+. .|+-.-.+||..|.+.+.+.+ +. .. .-+.|.+|..|.+.+-..
T Consensus 37 ~lHGH~y~v~v~v~g~~-----~~~~GmviDF~~lk~~l~~~i~~~lDH~~Ln~~~~~~~~~~PTaEniA~~i~~~l~~~ 111 (135)
T cd00470 37 NGHGHNYKVEVTVRGEI-----DPVTGMVMNLTDLKKAIEEAIMKPLDHKNLDDDVPYFADVVSTTENLAVYIWDNLQKV 111 (135)
T ss_pred CccCCCeEEEEEEEEeE-----cCCCCEEEEHHHHHHHHHHHHHhhcCCceeccccccccCCCCCHHHHHHHHHHHHHhh
Confidence 66788889998887532 233466899999998886632 21 11 247899999999988877
Q ss_pred CCCceEEEEEE
Q 032783 95 YPQISAVRVKV 105 (134)
Q Consensus 95 ~~~i~~v~V~v 105 (134)
.|...-.+|+|
T Consensus 112 l~~~~l~~V~v 122 (135)
T cd00470 112 LPVGLLYEVKV 122 (135)
T ss_pred cCCCeEEEEEE
Confidence 77433334444
No 39
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=27.58 E-value=84 Score=26.49 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEEEEc-CCCCCCCCCCeEEEEEEE
Q 032783 80 LESVAELIASTTLTKYPQISAVRVKVGK-PHVAVEGSLDYLGIEILR 125 (134)
Q Consensus 80 lE~la~~Ia~~i~~~~~~i~~v~V~v~K-p~a~i~~~~~~vgV~i~r 125 (134)
-=-||.+||+.|.+++++|..+.|.+-. -..|+..+ .-+.+++.-
T Consensus 315 YNvlA~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P-~~a~v~v~~ 360 (399)
T PRK04439 315 YNVLANRIAREIYEEVEGVKEVYVRLLSQIGKPIDEP-LVASIQVIP 360 (399)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEEeccCCCcCCCC-eEEEEEEec
Confidence 3347899999999999999999998754 23344432 345555543
No 40
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=27.49 E-value=99 Score=21.92 Aligned_cols=29 Identities=17% Similarity=0.097 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHhhCCCceEEEEEEEc
Q 032783 78 NLLESVAELIASTTLTKYPQISAVRVKVGK 107 (134)
Q Consensus 78 ~llE~la~~Ia~~i~~~~~~i~~v~V~v~K 107 (134)
.-=|++|.++|+.+-.+| ++++..-+|.-
T Consensus 81 r~kE~~ak~vA~~L~~rF-~vea~yfSV~g 109 (132)
T PF14468_consen 81 RKKEAMAKHVAGWLRHRF-GVEAGYFSVLG 109 (132)
T ss_pred HHHHHHHHHHHHHHHHHh-CcceeEEEecC
Confidence 336999999999999998 58988888864
No 41
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=27.21 E-value=1.3e+02 Score=18.64 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCCceEEEEEEEcC
Q 032783 83 VAELIASTTLTKYPQISAVRVKVGKP 108 (134)
Q Consensus 83 la~~Ia~~i~~~~~~i~~v~V~v~Kp 108 (134)
-|..+++.|+..||.. .+.+...+|
T Consensus 14 Ra~~l~q~L~~~Fp~~-~v~~~~~~~ 38 (72)
T TIGR02174 14 RAAWLKQELLEEFPDL-EIEGENTPP 38 (72)
T ss_pred HHHHHHHHHHHHCCCC-eeEEeeecC
Confidence 4778899999999975 566655443
No 42
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=27.04 E-value=3.2e+02 Score=21.66 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=55.4
Q ss_pred CEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 032783 10 DKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIAS 89 (134)
Q Consensus 10 d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~ 89 (134)
+.|.++|+.|+...=-+ -.||.=-+.+.|=. + ...+--+.|.+.+.-++. +..+.|+|+.+||+
T Consensus 137 ~mVvv~dI~f~S~CEHH------LLPf~G~~hIaYiP------~--~~ViGLSKl~RiV~~~ar--RlQiQERLT~qIAd 200 (259)
T PTZ00484 137 EMVKVRDIDIFSLCEHH------LLPFEGECTIGYIP------N--KKVLGLSKFARIIEIFSR--RLQVQERLTQQIAN 200 (259)
T ss_pred cEEEEeccceEEecccc------cCceEEEEEEEEec------C--CeEecHHHHHHHHHHHhc--ccHHHHHHHHHHHH
Confidence 46888999888765333 66777777776621 1 356677888887777654 48999999999999
Q ss_pred HHHhhCCCceEEEEEEE
Q 032783 90 TTLTKYPQISAVRVKVG 106 (134)
Q Consensus 90 ~i~~~~~~i~~v~V~v~ 106 (134)
.|.... +...|-|.++
T Consensus 201 aL~~~L-~p~GVaV~ie 216 (259)
T PTZ00484 201 ALQKYL-KPMGVAVVIV 216 (259)
T ss_pred HHHHhh-CCCceEEEEE
Confidence 997643 2344444443
No 43
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=26.92 E-value=1.9e+02 Score=21.31 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=37.8
Q ss_pred CCCcccHHHHHHHHHHHHhC------------CChhhHHHHHHHHHHHHHhhCCCceEEEEEEEcC
Q 032783 55 LADTISYTAIYRIVKEIMEG------------PPHNLLESVAELIASTTLTKYPQISAVRVKVGKP 108 (134)
Q Consensus 55 l~~tvdY~~l~~~I~~~~~~------------~~f~llE~la~~Ia~~i~~~~~~i~~v~V~v~Kp 108 (134)
+++.-+|..+.+.+.+.-.+ -+-.+.+..+..|.+..+..- .-.|-+|-|+||
T Consensus 81 ~~~~~~y~~L~~~l~~~~~~~~~~~~rifYLAvPP~~f~~i~~~L~~~~l~~~-~~g~~RiVvEKP 145 (183)
T PF00479_consen 81 YDDPESYAALKKALEELENKYGTEANRIFYLAVPPSLFGPIARNLSEAGLNEE-PNGWSRIVVEKP 145 (183)
T ss_dssp SS-HHHHHHHHHHHHHHHHCTTTTSEEEEEE-S-GGGHHHHHHHHHHHT-S-T-SSS-EEEEESST
T ss_pred CCCchhHHHHHHHHHHhhhhcCCCcceEEEeccCHHHHHHHHHHHHHHhcccc-cCCceEEEEeCC
Confidence 45566899999999987661 233778999999999988652 235899999997
No 44
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=26.76 E-value=2.7e+02 Score=20.79 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=54.8
Q ss_pred CEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 032783 10 DKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIAS 89 (134)
Q Consensus 10 d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~ 89 (134)
+.|.++|+.|+...=-+ --||.=.+.+.|-. + ...+--+.|.+.+.-++. +..+.|+|+.+||+
T Consensus 63 ~mV~v~~I~f~S~CEHH------llPf~G~~~VaYiP------~--~~ViGLSKl~RiV~~~ar--RlQiQERLt~qIa~ 126 (185)
T cd00642 63 EMVIVKDITLFSMCEHH------LVPFYGKVHIAYIP------K--DKVIGLSKLARIVEFFSR--RLQVQERLTKQIAV 126 (185)
T ss_pred cEEEEeCeeEEEecccc------ccceEEEEEEEEec------C--CeeeeHHHHHHHHHHHhc--CchHHHHHHHHHHH
Confidence 46788888888754222 55677777776621 1 556778888888887754 57999999999999
Q ss_pred HHHhhCCCceEEEEEEE
Q 032783 90 TTLTKYPQISAVRVKVG 106 (134)
Q Consensus 90 ~i~~~~~~i~~v~V~v~ 106 (134)
.|.+.. +...|-|.++
T Consensus 127 al~~~l-~~~gVaV~i~ 142 (185)
T cd00642 127 AIQEIL-GPQGVAVVIE 142 (185)
T ss_pred HHHHhh-CCCcEEEEEE
Confidence 998643 2344444443
No 45
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=26.53 E-value=50 Score=26.90 Aligned_cols=35 Identities=31% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHh
Q 032783 52 TDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIASTTLT 93 (134)
Q Consensus 52 ~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~~i~~ 93 (134)
..++-++.++..|++.+.++-+ |.+|.+||+.|.+
T Consensus 138 A~evvN~~~e~~L~~I~~~yGE-------Er~arrIA~aIv~ 172 (314)
T COG0275 138 AAEVVNTYSEEDLARIFKEYGE-------ERFAKRIARAIVE 172 (314)
T ss_pred HHHHHhcCCHHHHHHHHHHhcc-------HhhHHHHHHHHHH
Confidence 3456678889999988888766 4456666666654
No 46
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=26.08 E-value=2.8e+02 Score=21.00 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhCCCceEEEEEEE
Q 032783 82 SVAELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 82 ~la~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
.+++++-+.+.+++|.+.++.|.+.
T Consensus 242 ~i~~~i~~~i~~~~~~v~~v~ih~e 266 (268)
T TIGR01297 242 DIALEIEREILKRHPGIEHVTIQVE 266 (268)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4556666667777788888888875
No 47
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=24.66 E-value=54 Score=27.65 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=24.6
Q ss_pred ChhhHHHHHHHHHHHHHhhC-CCceEEEEEEE
Q 032783 76 PHNLLESVAELIASTTLTKY-PQISAVRVKVG 106 (134)
Q Consensus 76 ~f~llE~la~~Ia~~i~~~~-~~i~~v~V~v~ 106 (134)
.|+ ++++++-+.....++| |.|++++|++-
T Consensus 121 Gf~-lkhIG~vL~ak~K~ef~~iVdkvqV~ii 151 (411)
T PF03598_consen 121 GFR-LKHIGEVLIAKFKSEFGPIVDKVQVTII 151 (411)
T ss_dssp T---CHHHHHHHHHHHHHCSCTTBSEEEEEEE
T ss_pred CCC-HHHHHHHHHHHHHHHhhhhhhEEEEEEE
Confidence 355 8999999999999999 77999999874
No 48
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=24.32 E-value=3e+02 Score=20.46 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=55.1
Q ss_pred cCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 032783 9 GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIA 88 (134)
Q Consensus 9 ~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia 88 (134)
.+.|.++|+.|+...=-+ --||.=.+.+.|-.. ...+=-+.+.+.+.-+. ++..+.|+|+.+||
T Consensus 57 ~~~Vvv~~I~f~S~CEHH------llPf~G~~~VaYiP~--------~~viGLSKl~RiV~~~a--rRlQlQERLT~qIa 120 (179)
T PF01227_consen 57 DEMVVVRDIPFYSMCEHH------LLPFFGTAHVAYIPG--------GRVIGLSKLARIVDFFA--RRLQLQERLTRQIA 120 (179)
T ss_dssp SSEEEEEEEEEEEEETTT------SEEEEEEEEEEEE-S--------SEEE-HHHHHHHHHHHH--SSEE-HHHHHHHHH
T ss_pred CCeEEECCcceeeecccc------ccceeeeEEEEEEeC--------CcccChhHHHHHHHHHh--cCCCCHHHHHHHHH
Confidence 456788999988765333 667887888776221 34456788888877765 45899999999999
Q ss_pred HHHHhhCCCceEEEEEEE
Q 032783 89 STTLTKYPQISAVRVKVG 106 (134)
Q Consensus 89 ~~i~~~~~~i~~v~V~v~ 106 (134)
+.|.+.. +...|-|.++
T Consensus 121 ~~l~~~l-~p~gV~V~i~ 137 (179)
T PF01227_consen 121 DALEEIL-GPKGVAVVIE 137 (179)
T ss_dssp HHHHHHH-TSSEEEEEEE
T ss_pred HHHHHHh-CCCeEEEEEE
Confidence 9998754 2445555444
No 49
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=23.16 E-value=3.1e+02 Score=20.90 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=50.9
Q ss_pred cCEEEEeCeEEEEEecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 032783 9 GDKLILRGLRFHGFHGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIA 88 (134)
Q Consensus 9 ~d~I~I~~L~~~~~iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia 88 (134)
.+.|.++|+.|+...=-+ -=||.=-+.+.|=. | ...+=.+.|.+.+.-++ ++..+.|.|..+||
T Consensus 71 ~emVlvkdI~f~S~CEHH------llPf~GkahVAYiP------~--gkV~GlSKiaRiV~~~a--rR~QvQErlT~qIA 134 (195)
T COG0302 71 DEMVLVKDIEFYSLCEHH------LLPFFGKAHVAYIP------D--GKVIGLSKIARIVDIFA--RRLQVQERLTEQIA 134 (195)
T ss_pred ccEEEEeccceeeecccc------cccccceEEEEEcC------C--CceecHHHHHHHHHHHh--hhhHHHHHHHHHHH
Confidence 346788888887653221 33444445554411 1 34556788888877765 46899999999999
Q ss_pred HHHHhhCCCceEEEEEE
Q 032783 89 STTLTKYPQISAVRVKV 105 (134)
Q Consensus 89 ~~i~~~~~~i~~v~V~v 105 (134)
+.+.... ....|-|.+
T Consensus 135 ~al~~~L-~p~GVaVvi 150 (195)
T COG0302 135 DALQEIL-KPRGVAVVI 150 (195)
T ss_pred HHHHHhc-CcCceEEEE
Confidence 9998654 234444444
No 50
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=22.32 E-value=2e+02 Score=20.60 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=33.4
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCceEEEEEEEcCCCCCCCCCCeEEEEEE
Q 032783 76 PHNLLESVAELIASTTLTKYPQISAVRVKVGKPHVAVEGSLDYLGIEIL 124 (134)
Q Consensus 76 ~f~llE~la~~Ia~~i~~~~~~i~~v~V~v~Kp~a~i~~~~~~vgV~i~ 124 (134)
+-..=..+|+.|++.+.+ -|+|..+.|-|....+. |||.+.
T Consensus 69 ~~~~~~~~a~~i~~~v~~-~~~V~~A~vvv~~~~a~-------Vav~~~ 109 (177)
T PF09580_consen 69 HNNDRQQLADRIANRVKK-VPGVEDATVVVTDDNAY-------VAVDLD 109 (177)
T ss_pred CcchHHHHHHHHHHHHhc-CCCceEEEEEEECCEEE-------EEEEec
Confidence 445667899999999986 58999999999987763 777776
No 51
>PF00958 GMP_synt_C: GMP synthase C terminal domain domain; InterPro: IPR001674 The amidotransferase family of enzymes utilises the ammonia derived from the hydrolysis of glutamine for a subsequent chemical reaction catalyzed by the same enzyme. The ammonia intermediate does not dissociate into solution during the chemical transformations []. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. The C-terminal domain is specific to the GMP synthases 6.3.5.2 from EC. In prokaryotes this domain mediates dimerisation. Eukaryotic GMP synthases are monomers. This domain in eukaryotes includes several large insertions that may form globular domains [].; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006164 purine nucleotide biosynthetic process, 0006177 GMP biosynthetic process; PDB: 2VXO_A 2YWC_D 2YWB_D 2DPL_B 3A4I_A 3UOW_B 3TQI_D 1GPM_C.
Probab=21.72 E-value=2.5e+02 Score=18.65 Aligned_cols=60 Identities=23% Similarity=0.219 Sum_probs=37.0
Q ss_pred ecCCchhhhCCCEEEEEEEEEecccccCCCCCCCCcccHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHhhCCCceEEE
Q 032783 23 HGVKKEERTLGQKFVVDVDAWMDLRKAGKTDLLADTISYTAIYRIVKEIMEGPPHNLLESVAELIASTTLTKYPQISAVR 102 (134)
Q Consensus 23 iGv~~~Er~~~Q~v~vdl~l~~~~~~a~~~Ddl~~tvdY~~l~~~I~~~~~~~~f~llE~la~~Ia~~i~~~~~~i~~v~ 102 (134)
+||---.|..+..+.+..--..|+-.| .-+++-..+.+.|+.+|.++.|+|.+|-
T Consensus 26 vGV~GD~RtY~~~vvlR~v~s~D~MTa-------------------------~~~~~p~~~L~~is~~I~n~v~~V~RV~ 80 (93)
T PF00958_consen 26 VGVQGDQRTYGYVVVLRAVESEDFMTA-------------------------DWARLPWELLEEISSRITNEVPGVNRVV 80 (93)
T ss_dssp EECCTTTCEEEEEEEEEEEEESSSSSE-------------------------EE-TB-HHHHHHHHHHHHHHSTTEEEEE
T ss_pred ccccCCccceeeeEEEEEeeccccccc-------------------------ccccCCHHHHHHHHHHHHHcCCCccEEE
Confidence 788888888888877776555543221 1113334455566666777788999988
Q ss_pred EEEEc
Q 032783 103 VKVGK 107 (134)
Q Consensus 103 V~v~K 107 (134)
.-++-
T Consensus 81 yDiT~ 85 (93)
T PF00958_consen 81 YDITS 85 (93)
T ss_dssp EE---
T ss_pred EeccC
Confidence 88763
No 52
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=20.83 E-value=1.8e+02 Score=18.64 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHhhCCCceEEEEEEE
Q 032783 79 LLESVAELIASTTLTKYPQISAVRVKVG 106 (134)
Q Consensus 79 llE~la~~Ia~~i~~~~~~i~~v~V~v~ 106 (134)
--+..++.+|+.++.+ |-++..++++.
T Consensus 53 ~a~~~v~~i~~~LLaN-pvie~y~i~~~ 79 (80)
T PF02700_consen 53 EAEEQVEEICEKLLAN-PVIEDYEIEVE 79 (80)
T ss_dssp HHHHHHHHHHHHTTS--TTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCC-CceEEEEEEEE
Confidence 3567788888898876 88888888775
No 53
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=20.61 E-value=1e+02 Score=18.67 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHH
Q 032783 65 YRIVKEIMEGPPHNLLESVAELIAS 89 (134)
Q Consensus 65 ~~~I~~~~~~~~f~llE~la~~Ia~ 89 (134)
.+.|++++-...-+.||++|+++.+
T Consensus 11 ikdikefcyrd~~k~lervahrvmd 35 (65)
T PF13066_consen 11 IKDIKEFCYRDQGKMLERVAHRVMD 35 (65)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 3556777766666888888877654
No 54
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=20.47 E-value=3.1e+02 Score=20.80 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCChhhHHHHHHHHHHHHHhhCCC
Q 032783 74 GPPHNLLESVAELIASTTLTKYPQ 97 (134)
Q Consensus 74 ~~~f~llE~la~~Ia~~i~~~~~~ 97 (134)
-..+.|.|..+..+++.+.++||.
T Consensus 23 ~~~~~LMEnAG~aVa~~i~~~~~~ 46 (203)
T COG0062 23 LPLDILMENAGLAVARAILREYPL 46 (203)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCc
Confidence 367999999999999999999985
No 55
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=20.09 E-value=1.2e+02 Score=25.37 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEEEEc-CCCCCCCCCCeEEEEEEE
Q 032783 81 ESVAELIASTTLTKYPQISAVRVKVGK-PHVAVEGSLDYLGIEILR 125 (134)
Q Consensus 81 E~la~~Ia~~i~~~~~~i~~v~V~v~K-p~a~i~~~~~~vgV~i~r 125 (134)
--||..||..|.++++.|..+.|.+-- -.-||..+ ..+.|++.-
T Consensus 317 N~La~~iA~~I~~ev~~v~evyv~ilsqIGkPId~P-~~~~vqvi~ 361 (400)
T COG1812 317 NVLANQIANEIVEEVPGVEEVYVRILSQIGKPIDEP-KVASVQVIT 361 (400)
T ss_pred HHHHHHHHHHHHHhcCCcceEEEehhhhcCCcCCCC-ceEEEEEEe
Confidence 347889999999999999998887642 12234322 344555544
Done!