Query 032784
Match_columns 133
No_of_seqs 149 out of 1001
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 100.0 3.5E-29 7.6E-34 181.8 7.9 101 4-104 2-102 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 99.9 1.8E-26 3.9E-31 167.3 11.0 98 5-102 1-98 (111)
3 cd01807 GDX_N ubiquitin-like d 99.8 8.6E-21 1.9E-25 126.6 8.0 73 8-94 2-74 (74)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 1.8E-20 3.9E-25 125.2 8.0 73 8-96 2-74 (74)
5 cd01802 AN1_N ubiquitin-like d 99.8 5.6E-20 1.2E-24 131.3 8.7 78 5-96 26-103 (103)
6 cd01810 ISG15_repeat2 ISG15 ub 99.8 4.4E-20 9.5E-25 123.3 7.4 74 9-96 1-74 (74)
7 cd01794 DC_UbP_C dendritic cel 99.8 5.7E-20 1.2E-24 122.7 7.1 69 9-91 1-69 (70)
8 cd01797 NIRF_N amino-terminal 99.8 1E-19 2.2E-24 123.8 8.0 75 8-95 2-77 (78)
9 PTZ00044 ubiquitin; Provisiona 99.8 1.3E-19 2.9E-24 120.5 8.1 75 8-96 2-76 (76)
10 cd01798 parkin_N amino-termina 99.8 1.4E-19 3E-24 119.4 7.1 70 9-92 1-70 (70)
11 cd01790 Herp_N Homocysteine-re 99.8 2.4E-19 5.1E-24 123.3 7.4 75 6-91 1-78 (79)
12 cd01800 SF3a120_C Ubiquitin-li 99.8 3.3E-19 7.1E-24 119.9 7.0 72 14-99 5-76 (76)
13 cd01806 Nedd8 Nebb8-like ubiq 99.8 8.5E-19 1.8E-23 115.7 8.5 75 8-96 2-76 (76)
14 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 6.3E-19 1.4E-23 118.8 7.8 71 7-91 2-72 (73)
15 cd01808 hPLIC_N Ubiquitin-like 99.8 1.2E-18 2.6E-23 115.3 7.6 71 7-92 1-71 (71)
16 cd01803 Ubiquitin Ubiquitin. U 99.8 1.7E-18 3.8E-23 114.2 8.0 75 8-96 2-76 (76)
17 cd01804 midnolin_N Ubiquitin-l 99.8 3.9E-18 8.5E-23 115.5 8.4 75 7-96 2-76 (78)
18 KOG0004 Ubiquitin/40S ribosoma 99.8 4.8E-19 1E-23 134.7 4.1 83 9-105 3-85 (156)
19 cd01809 Scythe_N Ubiquitin-lik 99.8 5.5E-18 1.2E-22 110.8 8.0 72 7-92 1-72 (72)
20 cd01805 RAD23_N Ubiquitin-like 99.7 9.3E-18 2E-22 111.7 8.5 72 8-93 2-75 (77)
21 PF00240 ubiquitin: Ubiquitin 99.7 6.2E-18 1.4E-22 110.2 7.4 69 12-94 1-69 (69)
22 cd01796 DDI1_N DNA damage indu 99.7 5E-18 1.1E-22 113.0 6.7 67 9-89 1-69 (71)
23 cd01792 ISG15_repeat1 ISG15 ub 99.7 7.4E-18 1.6E-22 114.3 7.6 74 7-94 3-78 (80)
24 KOG0005 Ubiquitin-like protein 99.7 1.5E-17 3.3E-22 109.5 4.1 69 8-90 2-70 (70)
25 cd01763 Sumo Small ubiquitin-r 99.7 4.3E-16 9.4E-21 107.4 9.5 79 4-96 9-87 (87)
26 cd01812 BAG1_N Ubiquitin-like 99.7 2.3E-16 5E-21 103.1 7.5 70 7-91 1-70 (71)
27 KOG0003 Ubiquitin/60s ribosoma 99.7 1.2E-17 2.6E-22 121.3 0.4 74 9-96 3-76 (128)
28 cd01815 BMSC_UbP_N Ubiquitin-l 99.7 1.6E-16 3.6E-21 108.3 5.4 55 26-91 19-74 (75)
29 cd01813 UBP_N UBP ubiquitin pr 99.6 4.8E-15 1E-19 99.8 6.6 68 8-90 2-72 (74)
30 KOG0010 Ubiquitin-like protein 99.6 5.4E-15 1.2E-19 128.9 7.2 75 6-95 15-89 (493)
31 TIGR00601 rad23 UV excision re 99.6 9.9E-15 2.2E-19 124.5 8.4 72 7-92 1-75 (378)
32 smart00213 UBQ Ubiquitin homol 99.5 1.4E-14 3E-19 91.7 6.4 64 7-79 1-64 (64)
33 cd01799 Hoil1_N Ubiquitin-like 99.5 2E-14 4.4E-19 97.3 7.1 70 7-91 3-74 (75)
34 cd01769 UBL Ubiquitin-like dom 99.4 7.2E-13 1.6E-17 84.7 7.1 67 11-91 2-68 (69)
35 KOG0011 Nucleotide excision re 99.3 7E-12 1.5E-16 105.3 7.0 66 7-80 1-68 (340)
36 cd01795 USP48_C USP ubiquitin- 99.3 9.3E-12 2E-16 89.4 6.4 69 12-95 11-80 (107)
37 PF11976 Rad60-SLD: Ubiquitin- 99.2 2.7E-11 5.8E-16 79.6 6.8 71 7-91 1-72 (72)
38 cd01789 Alp11_N Ubiquitin-like 99.2 8.2E-11 1.8E-15 80.8 8.7 72 7-91 2-80 (84)
39 KOG4248 Ubiquitin-like protein 99.2 4.6E-11 1E-15 111.5 6.4 78 7-99 3-80 (1143)
40 KOG0001 Ubiquitin and ubiquiti 99.1 5E-10 1.1E-14 70.5 8.9 72 9-94 2-73 (75)
41 PLN02560 enoyl-CoA reductase 98.9 2.4E-09 5.3E-14 89.4 7.7 65 8-79 2-76 (308)
42 cd01801 Tsc13_N Ubiquitin-like 98.9 4.7E-09 1E-13 70.6 6.0 69 9-89 3-74 (77)
43 PF14560 Ubiquitin_2: Ubiquiti 98.8 1.7E-08 3.8E-13 69.1 7.2 72 7-91 2-82 (87)
44 cd00196 UBQ Ubiquitin-like pro 98.7 1.1E-07 2.4E-12 56.1 6.8 66 12-91 3-68 (69)
45 cd01788 ElonginB Ubiquitin-lik 98.6 9.4E-08 2E-12 70.1 6.8 79 6-93 2-81 (119)
46 KOG0006 E3 ubiquitin-protein l 98.5 2.1E-07 4.5E-12 79.0 5.6 72 7-91 3-74 (446)
47 PF11543 UN_NPL4: Nuclear pore 98.5 4E-07 8.7E-12 62.4 5.3 66 5-79 3-73 (80)
48 PF10302 DUF2407: DUF2407 ubiq 98.4 1.2E-06 2.5E-11 62.3 6.0 60 9-73 3-64 (97)
49 PF00789 UBX: UBX domain; Int 98.1 4E-05 8.7E-10 51.4 8.4 69 3-79 3-76 (82)
50 KOG1769 Ubiquitin-like protein 97.8 0.00026 5.7E-09 50.7 8.9 78 5-96 19-96 (99)
51 KOG4495 RNA polymerase II tran 97.6 0.00014 2.9E-09 52.4 5.0 75 6-89 2-79 (110)
52 smart00166 UBX Domain present 97.5 0.0011 2.4E-08 44.5 8.4 67 5-79 3-74 (80)
53 KOG1872 Ubiquitin-specific pro 97.5 0.00029 6.2E-09 62.1 6.5 71 11-94 6-77 (473)
54 cd01770 p47_UBX p47-like ubiqu 97.5 0.0012 2.6E-08 44.9 8.1 67 5-78 3-72 (79)
55 cd01811 OASL_repeat1 2'-5' oli 97.4 0.0014 3.1E-08 45.0 7.6 63 7-78 1-68 (80)
56 cd01767 UBX UBX (ubiquitin reg 97.3 0.0029 6.2E-08 42.1 8.6 63 6-77 2-69 (77)
57 KOG4583 Membrane-associated ER 97.3 2E-05 4.4E-10 67.1 -2.6 87 4-99 7-94 (391)
58 cd01774 Faf1_like2_UBX Faf1 ik 97.3 0.0026 5.7E-08 43.9 8.3 67 4-79 2-78 (85)
59 PF13019 Telomere_Sde2: Telome 97.3 0.002 4.3E-08 49.8 8.4 82 7-97 1-89 (162)
60 PF08817 YukD: WXG100 protein 97.2 0.001 2.2E-08 44.7 5.7 69 6-79 2-74 (79)
61 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0048 1E-07 41.7 8.1 66 5-79 3-73 (79)
62 KOG3493 Ubiquitin-like protein 97.0 0.00017 3.8E-09 48.4 0.2 64 8-79 3-66 (73)
63 KOG0013 Uncharacterized conser 96.7 0.0018 4E-08 52.2 3.8 68 4-79 143-211 (231)
64 COG5227 SMT3 Ubiquitin-like pr 96.6 0.013 2.9E-07 41.8 6.9 66 6-79 24-89 (103)
65 COG5417 Uncharacterized small 96.1 0.05 1.1E-06 37.5 7.7 71 6-79 6-76 (81)
66 cd01771 Faf1_UBX Faf1 UBX doma 96.1 0.068 1.5E-06 36.4 8.4 67 4-79 2-73 (80)
67 KOG2507 Ubiquitin regulatory p 95.7 0.033 7.2E-07 49.2 6.6 115 4-132 312-432 (506)
68 PF15044 CLU_N: Mitochondrial 95.7 0.029 6.3E-07 37.9 5.0 62 24-97 1-63 (76)
69 PF11470 TUG-UBL1: GLUT4 regul 95.6 0.05 1.1E-06 36.0 5.6 58 14-79 4-61 (65)
70 cd01773 Faf1_like1_UBX Faf1 ik 95.2 0.29 6.3E-06 33.8 8.8 67 4-79 3-74 (82)
71 KOG3206 Alpha-tubulin folding 95.2 0.067 1.4E-06 43.3 6.4 59 21-92 16-81 (234)
72 PF08337 Plexin_cytopl: Plexin 94.3 0.094 2E-06 47.3 5.7 116 6-127 189-329 (539)
73 KOG2086 Protein tyrosine phosp 93.7 0.19 4.2E-06 43.6 6.1 69 4-79 303-374 (380)
74 PF09379 FERM_N: FERM N-termin 93.1 0.88 1.9E-05 29.6 7.5 70 11-92 1-77 (80)
75 cd00754 MoaD Ubiquitin domain 91.6 1.3 2.8E-05 28.7 6.7 62 16-91 14-75 (80)
76 cd01760 RBD Ubiquitin-like dom 91.4 0.53 1.1E-05 31.6 4.7 45 9-61 2-46 (72)
77 smart00455 RBD Raf-like Ras-bi 91.1 0.63 1.4E-05 30.9 4.8 45 9-61 2-46 (70)
78 cd06409 PB1_MUG70 The MUG70 pr 89.4 1.1 2.4E-05 31.2 5.1 44 8-59 2-48 (86)
79 TIGR01687 moaD_arch MoaD famil 89.3 3.6 7.8E-05 27.4 7.5 67 15-91 13-83 (88)
80 PF02196 RBD: Raf-like Ras-bin 88.4 2.9 6.2E-05 27.7 6.4 55 8-70 2-58 (71)
81 KOG1639 Steroid reductase requ 88.0 1.2 2.7E-05 37.1 5.3 55 19-79 14-72 (297)
82 PF10209 DUF2340: Uncharacteri 88.0 1.4 3E-05 32.7 5.1 58 22-79 20-101 (122)
83 PF11620 GABP-alpha: GA-bindin 87.8 1.8 3.8E-05 30.5 5.2 66 20-96 5-70 (88)
84 smart00666 PB1 PB1 domain. Pho 87.5 2.1 4.5E-05 28.0 5.3 45 7-60 2-46 (81)
85 TIGR01682 moaD molybdopterin c 87.0 5.5 0.00012 26.2 7.2 56 15-79 13-69 (80)
86 smart00295 B41 Band 4.1 homolo 86.2 2.2 4.8E-05 31.8 5.5 64 5-76 2-72 (207)
87 cd06407 PB1_NLP A PB1 domain i 85.8 2.5 5.4E-05 28.9 5.1 43 10-59 2-45 (82)
88 cd01817 RGS12_RBD Ubiquitin do 85.5 2.8 6E-05 28.5 5.1 45 10-62 3-47 (73)
89 PF08783 DWNN: DWNN domain; I 85.0 2.1 4.5E-05 29.1 4.3 32 9-40 1-33 (74)
90 PF02597 ThiS: ThiS family; I 84.9 2.5 5.5E-05 27.1 4.6 58 21-91 15-72 (77)
91 cd06406 PB1_P67 A PB1 domain i 84.9 3.4 7.4E-05 28.5 5.4 37 19-62 12-48 (80)
92 PF00564 PB1: PB1 domain; Int 82.8 3.9 8.5E-05 26.7 4.9 47 7-61 2-48 (84)
93 KOG0012 DNA damage inducible p 82.3 3 6.4E-05 36.3 5.1 64 8-79 4-69 (380)
94 PF14836 Ubiquitin_3: Ubiquiti 81.4 13 0.00029 26.0 7.3 53 19-79 15-73 (88)
95 PLN02799 Molybdopterin synthas 80.6 9 0.0002 25.2 6.1 56 15-79 16-71 (82)
96 PRK06437 hypothetical protein; 80.2 13 0.00029 24.0 7.7 44 20-79 13-56 (67)
97 PRK08364 sulfur carrier protei 79.0 14 0.0003 24.0 6.5 43 21-79 17-59 (70)
98 smart00144 PI3K_rbd PI3-kinase 78.3 14 0.0003 26.2 6.8 82 5-93 16-105 (108)
99 PF00788 RA: Ras association ( 77.5 13 0.00029 24.2 6.2 46 6-58 2-52 (93)
100 PF10790 DUF2604: Protein of U 77.4 12 0.00026 25.3 5.8 70 14-94 3-73 (76)
101 PF12754 Blt1: Cell-cycle cont 77.1 0.77 1.7E-05 39.0 0.0 50 27-76 103-160 (309)
102 cd06408 PB1_NoxR The PB1 domai 72.8 18 0.00038 25.3 5.9 44 9-60 3-46 (86)
103 cd01777 SNX27_RA Ubiquitin dom 72.3 5.5 0.00012 28.0 3.3 43 6-56 1-43 (87)
104 PF02505 MCR_D: Methyl-coenzym 72.1 7.2 0.00016 30.1 4.2 55 4-73 65-120 (153)
105 cd05992 PB1 The PB1 domain is 70.7 12 0.00026 24.1 4.6 44 8-60 2-46 (81)
106 KOG0007 Splicing factor 3a, su 70.0 2.2 4.8E-05 36.0 1.1 49 14-70 290-339 (341)
107 TIGR03260 met_CoM_red_D methyl 69.9 8.5 0.00019 29.6 4.1 55 4-73 64-118 (150)
108 cd01768 RA RA (Ras-associating 69.1 25 0.00053 23.1 5.9 53 9-68 2-64 (87)
109 KOG3439 Protein conjugation fa 68.6 20 0.00043 26.4 5.7 53 5-64 29-84 (116)
110 cd06396 PB1_NBR1 The PB1 domai 67.8 12 0.00027 25.7 4.3 46 9-67 1-48 (81)
111 TIGR02958 sec_mycoba_snm4 secr 66.2 40 0.00086 29.8 8.1 79 8-95 4-83 (452)
112 cd01787 GRB7_RA RA (RAS-associ 64.0 23 0.0005 24.7 5.0 60 6-73 2-68 (85)
113 cd00565 ThiS ThiaminS ubiquiti 63.2 35 0.00076 21.5 6.8 51 14-79 4-54 (65)
114 PF11069 DUF2870: Protein of u 62.0 11 0.00024 27.0 3.2 23 56-79 3-25 (98)
115 PF14533 USP7_C2: Ubiquitin-sp 60.2 25 0.00055 27.6 5.4 47 20-73 36-90 (213)
116 KOG4250 TANK binding protein k 60.0 23 0.0005 33.4 5.7 46 11-64 319-364 (732)
117 COG4055 McrD Methyl coenzyme M 58.9 23 0.00049 27.4 4.7 54 5-73 74-128 (165)
118 PF14732 UAE_UbL: Ubiquitin/SU 55.8 37 0.00079 23.2 4.9 47 27-79 8-62 (87)
119 PF02824 TGS: TGS domain; Int 55.7 25 0.00055 22.1 3.9 29 9-40 1-29 (60)
120 cd01778 RASSF1_RA Ubiquitin-li 55.6 58 0.0013 23.2 6.0 34 6-40 6-39 (96)
121 cd06411 PB1_p51 The PB1 domain 54.6 24 0.00053 24.2 3.8 35 20-61 9-43 (78)
122 TIGR01683 thiS thiamine biosyn 54.4 52 0.0011 20.7 6.8 51 14-79 3-53 (64)
123 PF14453 ThiS-like: ThiS-like 54.3 57 0.0012 21.0 6.0 41 21-79 9-49 (57)
124 KOG3391 Transcriptional co-rep 49.9 15 0.00033 28.0 2.4 66 27-98 61-142 (151)
125 cd01612 APG12_C Ubiquitin-like 49.0 70 0.0015 21.9 5.5 61 6-73 1-66 (87)
126 cd01816 Raf_RBD Ubiquitin doma 48.4 67 0.0014 21.9 5.1 41 9-57 2-42 (74)
127 KOG1364 Predicted ubiquitin re 48.2 21 0.00046 30.9 3.3 65 8-79 279-348 (356)
128 PF00794 PI3K_rbd: PI3-kinase 47.7 68 0.0015 22.1 5.4 70 4-74 14-85 (106)
129 COG5100 NPL4 Nuclear pore prot 47.6 90 0.002 28.2 7.1 65 8-79 2-72 (571)
130 PTZ00380 microtubule-associate 46.8 24 0.00053 26.1 3.1 45 23-74 46-90 (121)
131 PF02192 PI3K_p85B: PI3-kinase 46.8 21 0.00046 24.3 2.6 21 20-40 2-22 (78)
132 PF06234 TmoB: Toluene-4-monoo 46.5 99 0.0022 21.6 8.8 71 6-79 3-77 (85)
133 PF14847 Ras_bdg_2: Ras-bindin 45.6 47 0.001 23.8 4.3 32 8-40 2-33 (105)
134 cd06398 PB1_Joka2 The PB1 doma 45.3 77 0.0017 22.0 5.3 42 12-60 4-51 (91)
135 KOG2561 Adaptor protein NUB1, 44.2 18 0.00039 32.8 2.3 51 22-79 54-104 (568)
136 PRK05659 sulfur carrier protei 40.9 89 0.0019 19.4 5.3 51 14-79 5-55 (66)
137 PF02991 Atg8: Autophagy prote 40.7 67 0.0015 22.9 4.5 45 22-73 37-82 (104)
138 KOG2689 Predicted ubiquitin re 39.3 57 0.0012 27.6 4.4 67 5-79 209-280 (290)
139 cd06410 PB1_UP2 Uncharacterize 36.7 1.2E+02 0.0026 21.3 5.2 39 12-59 18-56 (97)
140 smart00143 PI3K_p85B PI3-kinas 36.5 36 0.00078 23.3 2.4 20 21-40 3-22 (78)
141 KOG4147 Uncharacterized conser 35.3 1.7E+02 0.0036 21.7 5.9 63 17-79 22-106 (127)
142 smart00314 RA Ras association 33.7 1.3E+02 0.0029 19.7 4.9 41 9-57 5-50 (90)
143 cd06404 PB1_aPKC PB1 domain is 33.0 85 0.0018 21.8 3.8 33 9-41 1-33 (83)
144 PRK05863 sulfur carrier protei 32.4 1.3E+02 0.0029 19.0 6.4 50 14-79 5-54 (65)
145 PF05322 NinE: NINE Protein; 31.8 20 0.00043 23.5 0.5 25 98-122 24-48 (60)
146 cd01818 TIAM1_RBD Ubiquitin do 30.8 1.2E+02 0.0027 20.8 4.3 40 10-57 3-42 (77)
147 cd01611 GABARAP Ubiquitin doma 30.1 87 0.0019 22.5 3.7 45 22-73 45-90 (112)
148 PF04110 APG12: Ubiquitin-like 28.9 1.6E+02 0.0034 20.5 4.7 60 6-72 1-65 (87)
149 PRK11130 moaD molybdopterin sy 28.8 1.7E+02 0.0037 19.1 5.5 51 22-79 19-70 (81)
150 PF00276 Ribosomal_L23: Riboso 28.8 84 0.0018 21.6 3.3 40 18-64 21-61 (91)
151 PF12436 USP7_ICP0_bdg: ICP0-b 28.0 1.3E+02 0.0028 24.2 4.7 46 6-58 176-223 (249)
152 PRK12385 fumarate reductase ir 26.3 1.9E+02 0.0041 23.3 5.4 41 1-41 1-48 (244)
153 cd01776 Rin1_RA Ubiquitin doma 25.3 2.5E+02 0.0053 19.7 5.2 49 14-68 10-62 (87)
154 KOG3309 Ferredoxin [Energy pro 24.9 1.1E+02 0.0024 23.7 3.6 31 4-35 41-71 (159)
155 PRK01777 hypothetical protein; 24.3 2.5E+02 0.0055 19.5 9.0 78 6-99 5-82 (95)
156 KOG4248 Ubiquitin-like protein 24.1 39 0.00084 33.4 1.2 52 27-91 344-395 (1143)
157 KOG2660 Locus-specific chromos 23.8 56 0.0012 28.1 2.0 64 22-92 168-234 (331)
158 PF14941 OAF: Transcriptional 23.5 2.1E+02 0.0047 23.6 5.2 54 3-63 24-77 (240)
159 PF06487 SAP18: Sin3 associate 23.3 1.5E+02 0.0033 21.7 3.9 54 26-79 45-114 (120)
160 PF08825 E2_bind: E2 binding d 22.1 1.3E+02 0.0029 20.5 3.3 56 22-79 1-64 (84)
161 KOG1639 Steroid reductase requ 21.6 42 0.0009 28.3 0.8 40 86-125 204-247 (297)
162 PF14451 Ub-Mut7C: Mut7-C ubiq 21.5 2.7E+02 0.0058 18.8 5.3 43 21-79 26-69 (81)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.96 E-value=3.5e-29 Score=181.79 Aligned_cols=101 Identities=68% Similarity=1.112 Sum_probs=92.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+|.|+|+||+.+|.+|.++.+++++||++||++|++.||++++..+.++++|||||+||+|+|++||++|++.-|+++++
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 58899999999999999999999999999999999999998754445599999999999999999999999999999999
Q ss_pred eEEEEEEecCCccchhhhhhh
Q 032784 84 VIIMHVVVQPSLAKTKTALKV 104 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~~~~k~~ 104 (133)
.+|||+++|++.+.++..|++
T Consensus 82 ~~TmHvvlr~~~~~~~~~k~~ 102 (113)
T cd01814 82 VITMHVVVQPPLADKKTEKKV 102 (113)
T ss_pred ceEEEEEecCCCCCccccccc
Confidence 999999999999888754444
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.94 E-value=1.8e-26 Score=167.27 Aligned_cols=98 Identities=45% Similarity=0.893 Sum_probs=82.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
|+|+|+|++.+|+++.++.+++++||++||+.|.++||.+|++.+.+++++||||.||+|+|++||++|++..++.++++
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 68999999999988999999999999999999999999999877899999999999999999999999999999987788
Q ss_pred EEEEEEecCCccchhhhh
Q 032784 85 IIMHVVVQPSLAKTKTAL 102 (133)
Q Consensus 85 ~tlhlv~~~~~~~~~~~k 102 (133)
++|||++|++.+.++..+
T Consensus 81 ~vmHlvvrp~~~~~~~~~ 98 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEK 98 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS
T ss_pred EEEEEEecCCCCCccccc
Confidence 999999999987776433
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.84 E-value=8.6e-21 Score=126.56 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=68.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.||+.+|+. ..+++++++||++||++|+++ .|+++++|||+|+||+|+|+.||++|||++++ |+
T Consensus 2 ~i~vk~~~G~~-~~l~v~~~~tV~~lK~~i~~~-------~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~------~l 67 (74)
T cd01807 2 FLTVKLLQGRE-CSLQVSEKESVSTLKKLVSEH-------LNVPEEQQRLLFKGKALADDKRLSDYSIGPNA------KL 67 (74)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCCCHHHeEEEECCEECCCCCCHHHCCCCCCC------EE
Confidence 57889999955 578999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCC
Q 032784 88 HVVVQPS 94 (133)
Q Consensus 88 hlv~~~~ 94 (133)
||+++++
T Consensus 68 ~l~~~~~ 74 (74)
T cd01807 68 NLVVRPP 74 (74)
T ss_pred EEEEcCC
Confidence 9999864
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.83 E-value=1.8e-20 Score=125.18 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=65.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.||. + +...++++|++||++||++|+++ +|+|+++|||||+||+|+|++||++|+|++++ |+
T Consensus 2 qi~vk~--~-~~~~l~v~~~~tV~~lK~~i~~~-------~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~------tl 65 (74)
T cd01793 2 QLFVRA--Q-NTHTLEVTGQETVSDIKAHVAGL-------EGIDVEDQVLLLAGVPLEDDATLGQCGVEELC------TL 65 (74)
T ss_pred EEEEEC--C-CEEEEEECCcCcHHHHHHHHHhh-------hCCCHHHEEEEECCeECCCCCCHHHcCCCCCC------EE
Confidence 355555 3 34578999999999999999999 99999999999999999999999999999999 99
Q ss_pred EEEecCCcc
Q 032784 88 HVVVQPSLA 96 (133)
Q Consensus 88 hlv~~~~~~ 96 (133)
|+++|++||
T Consensus 66 ~l~~~l~GG 74 (74)
T cd01793 66 EVAGRLLGG 74 (74)
T ss_pred EEEEecCCC
Confidence 999999875
No 5
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.82 E-value=5.6e-20 Score=131.33 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=72.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.+.|.||+.+|..+ .+++++++||++||++|+++ .|+++++|||+|+|++|+|+.+|++|+|.+++
T Consensus 26 ~~M~I~Vk~l~G~~~-~leV~~~~TV~~lK~kI~~~-------~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~s----- 92 (103)
T cd01802 26 DTMELFIETLTGTCF-ELRVSPFETVISVKAKIQRL-------EGIPVAQQHLIWNNMELEDEYCLNDYNISEGC----- 92 (103)
T ss_pred CCEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHH-------hCCChHHEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 468899999999654 68999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCcc
Q 032784 85 IIMHVVVQPSLA 96 (133)
Q Consensus 85 ~tlhlv~~~~~~ 96 (133)
|+|++++.+||
T Consensus 93 -tL~l~~~l~GG 103 (103)
T cd01802 93 -TLKLVLAMRGG 103 (103)
T ss_pred -EEEEEEecCCC
Confidence 89999998774
No 6
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.82 E-value=4.4e-20 Score=123.28 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=68.6
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEE
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlh 88 (133)
|.||+..|+ ..++++++++||++||++|++. .|+++++|+|+|+|+.|+|++||++|+|++++ |+|
T Consensus 1 i~vk~~~g~-~~~l~v~~~~tV~~lK~~I~~~-------~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~------tl~ 66 (74)
T cd01810 1 ILVRNDKGR-SSIYEVQLTQTVATLKQQVSQR-------ERVQADQFWLSFEGRPMEDEHPLGEYGLKPGC------TVF 66 (74)
T ss_pred CEEECCCCC-EEEEEECCcChHHHHHHHHHHH-------hCCCHHHeEEEECCEECCCCCCHHHcCCCCCC------EEE
Confidence 468999995 4579999999999999999999 99999999999999999999999999999999 899
Q ss_pred EEecCCcc
Q 032784 89 VVVQPSLA 96 (133)
Q Consensus 89 lv~~~~~~ 96 (133)
|++++.+|
T Consensus 67 l~~~l~gg 74 (74)
T cd01810 67 MNLRLRGG 74 (74)
T ss_pred EEEEccCC
Confidence 99988764
No 7
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.81 E-value=5.7e-20 Score=122.73 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=64.9
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEE
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlh 88 (133)
+++|+.+|+.+ ++++++++||++||++|++. +|+++++|||+|+|+.|+|+.+|++|+|++++ |+|
T Consensus 1 ~~vk~~~G~~~-~l~v~~~~TV~~lK~~I~~~-------~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~------tv~ 66 (70)
T cd01794 1 LKVRLSTGKDV-KLSVSSKDTVGQLKKQLQAA-------EGVDPCCQRWFFSGKLLTDKTRLQETKIQKDY------VVQ 66 (70)
T ss_pred CeEEcCCCCEE-EEEECCcChHHHHHHHHHHH-------hCCCHHHeEEEECCeECCCCCCHHHcCCCCCC------EEE
Confidence 57899999665 79999999999999999999 99999999999999999999999999999888 899
Q ss_pred EEe
Q 032784 89 VVV 91 (133)
Q Consensus 89 lv~ 91 (133)
+++
T Consensus 67 ~~~ 69 (70)
T cd01794 67 VIV 69 (70)
T ss_pred EEe
Confidence 986
No 8
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.81 E-value=1e-19 Score=123.79 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=68.4
Q ss_pred EEEEEeCCCCeeeeEE-eCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~-v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
.|.||+.+|..+..++ +++++||++||++|++. .|+++++|||||+||+|+|+.||++|||++++ |
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~-------~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~------~ 68 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQEL-------FNVEPECQRLFYRGKQMEDGHTLFDYNVGLND------I 68 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHH-------hCCCHHHeEEEeCCEECCCCCCHHHcCCCCCC------E
Confidence 5788999996645675 89999999999999999 99999999999999999999999999999999 8
Q ss_pred EEEEecCCc
Q 032784 87 MHVVVQPSL 95 (133)
Q Consensus 87 lhlv~~~~~ 95 (133)
+|+++|+.+
T Consensus 69 i~l~~~~~~ 77 (78)
T cd01797 69 IQLLVRQDP 77 (78)
T ss_pred EEEEEecCC
Confidence 999998653
No 9
>PTZ00044 ubiquitin; Provisional
Probab=99.81 E-value=1.3e-19 Score=120.49 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=69.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.||+.+|.. ..+++++++||++||++|++. .|+|+++|||+|+|+.|+|+.+|++|+|++++ ++
T Consensus 2 ~i~vk~~~G~~-~~l~v~~~~tv~~lK~~i~~~-------~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~------~i 67 (76)
T PTZ00044 2 QILIKTLTGKK-QSFNFEPDNTVQQVKMALQEK-------EGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGS------TI 67 (76)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCCCHHHeEEEECCEEccCCCcHHHcCCCCCC------EE
Confidence 57889999955 578999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCCcc
Q 032784 88 HVVVQPSLA 96 (133)
Q Consensus 88 hlv~~~~~~ 96 (133)
|++++++++
T Consensus 68 ~l~~~~~gg 76 (76)
T PTZ00044 68 HMVLQLRGG 76 (76)
T ss_pred EEEEEccCC
Confidence 999988764
No 10
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.80 E-value=1.4e-19 Score=119.37 Aligned_cols=70 Identities=21% Similarity=0.380 Sum_probs=65.2
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEE
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlh 88 (133)
|.||+.+|.. ..+++++++||++||++|+++ .|+++++|||+|+|+.|+|+.+|++|+|++++ |+|
T Consensus 1 i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~s------tl~ 66 (70)
T cd01798 1 VYVRTNTGHT-FPVEVDPDTDIKQLKEVVAKR-------QGVPPDQLRVIFAGKELRNTTTIQECDLGQQS------ILH 66 (70)
T ss_pred CEEEcCCCCE-EEEEECCCChHHHHHHHHHHH-------HCCCHHHeEEEECCeECCCCCcHHHcCCCCCC------EEE
Confidence 4688999955 578999999999999999999 99999999999999999999999999999999 899
Q ss_pred EEec
Q 032784 89 VVVQ 92 (133)
Q Consensus 89 lv~~ 92 (133)
|+.|
T Consensus 67 l~~~ 70 (70)
T cd01798 67 AVRR 70 (70)
T ss_pred EEeC
Confidence 9875
No 11
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.79 E-value=2.4e-19 Score=123.26 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=64.1
Q ss_pred eEEEEEEeCCCCee-eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCC--CCCCCCCC
Q 032784 6 LIDIKFRLYDGSDI-GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK--IPYGEVPG 82 (133)
Q Consensus 6 ~i~l~~rl~~G~~i-~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~--I~~g~~~~ 82 (133)
.|+|.||..+|+.. ..+++++++||++||++|++.+| ..+++++|||||+||+|+|+.||++|. +.++.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~-----~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~--- 72 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYP-----SKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYH--- 72 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcC-----CCCChhHeEEEEcCeeccchhhHHHHhhcccCCc---
Confidence 47899999999652 24556899999999999999843 236789999999999999999999996 88887
Q ss_pred ceEEEEEEe
Q 032784 83 GVIIMHVVV 91 (133)
Q Consensus 83 ~~~tlhlv~ 91 (133)
|||||+
T Consensus 73 ---tiHLV~ 78 (79)
T cd01790 73 ---MVHLVC 78 (79)
T ss_pred ---eEEEEe
Confidence 999996
No 12
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.79 E-value=3.3e-19 Score=119.90 Aligned_cols=72 Identities=18% Similarity=0.339 Sum_probs=66.6
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEecC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQP 93 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~~~ 93 (133)
++| +++++++++++||++||++|++. .|+|+++|||+|+|+.|+|++||++|+|.+++ ++|+++++
T Consensus 5 l~g-~~~~l~v~~~~TV~~lK~~i~~~-------~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~------~l~v~~~~ 70 (76)
T cd01800 5 LNG-QMLNFTLQLSDPVSVLKVKIHEE-------TGMPAGKQKLQYEGIFIKDSNSLAYYNLANGT------IIHLQLKE 70 (76)
T ss_pred cCC-eEEEEEECCCCcHHHHHHHHHHH-------HCCCHHHEEEEECCEEcCCCCcHHHcCCCCCC------EEEEEEec
Confidence 356 56789999999999999999999 99999999999999999999999999999999 89999999
Q ss_pred Cccchh
Q 032784 94 SLAKTK 99 (133)
Q Consensus 94 ~~~~~~ 99 (133)
+++++|
T Consensus 71 ~gg~~~ 76 (76)
T cd01800 71 RGGRKK 76 (76)
T ss_pred CCCcCC
Confidence 887664
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.78 E-value=8.5e-19 Score=115.67 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=69.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.|+..+|.. ..+++++++||++||++|+++ .+++++.|||+|+|+.|+|+.||++|+|.+|+ ++
T Consensus 2 ~i~v~~~~g~~-~~~~v~~~~tv~~lK~~i~~~-------~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~------~i 67 (76)
T cd01806 2 LIKVKTLTGKE-IEIDIEPTDKVERIKERVEEK-------EGIPPQQQRLIYSGKQMNDDKTAADYKLEGGS------VL 67 (76)
T ss_pred EEEEEeCCCCE-EEEEECCCCCHHHHHHHHhHh-------hCCChhhEEEEECCeEccCCCCHHHcCCCCCC------EE
Confidence 58899999965 479999999999999999999 89999999999999999999999999999999 89
Q ss_pred EEEecCCcc
Q 032784 88 HVVVQPSLA 96 (133)
Q Consensus 88 hlv~~~~~~ 96 (133)
|++++.+++
T Consensus 68 ~l~~~~~gg 76 (76)
T cd01806 68 HLVLALRGG 76 (76)
T ss_pred EEEEEccCC
Confidence 999988764
No 14
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.78 E-value=6.3e-19 Score=118.80 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=65.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|.|+...|+.+ .++++|++||++||++|+++ .++++++|||||+|++|+|+.||++|||.+|+ |
T Consensus 2 ~~i~vkt~~Gk~~-~~~v~~~~TV~~LK~~I~~~-------~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~s------t 67 (73)
T cd01791 2 IEVVCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQ-------TGTRPEKIVLKKWYTIFKDHISLGDYEIHDGM------N 67 (73)
T ss_pred EEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHH-------hCCChHHEEEEeCCcCCCCCCCHHHcCCCCCC------E
Confidence 6789999999665 68999999999999999999 89999999999999999999999999999999 8
Q ss_pred EEEEe
Q 032784 87 MHVVV 91 (133)
Q Consensus 87 lhlv~ 91 (133)
+||..
T Consensus 68 v~l~~ 72 (73)
T cd01791 68 LELYY 72 (73)
T ss_pred EEEEe
Confidence 99863
No 15
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.77 E-value=1.2e-18 Score=115.30 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=65.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|.|+..+|. . .+++++++||++||++|+++ .|+++++|||+|+||+|+|++||++|||++++ |
T Consensus 1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I~~~-------~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~s------t 65 (71)
T cd01808 1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAVSKK-------FKANQEQLVLIFAGKILKDTDTLTQHNIKDGL------T 65 (71)
T ss_pred CEEEEEcCCCC-E-EEEECCCChHHHHHHHHHHH-------hCCCHHHEEEEECCeEcCCCCcHHHcCCCCCC------E
Confidence 35788899994 4 78999999999999999999 88999999999999999999999999999999 8
Q ss_pred EEEEec
Q 032784 87 MHVVVQ 92 (133)
Q Consensus 87 lhlv~~ 92 (133)
+|+++|
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999875
No 16
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.77 E-value=1.7e-18 Score=114.18 Aligned_cols=75 Identities=21% Similarity=0.332 Sum_probs=70.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.||..+|+.+ .+++++++||++||++|++. .++++++|||+|+|+.|+|+.+|++|+|++++ ++
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~-------~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~i 67 (76)
T cd01803 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------TL 67 (76)
T ss_pred EEEEEcCCCCEE-EEEECCcCcHHHHHHHHHHH-------hCCCHHHeEEEECCEECCCCCcHHHcCCCCCC------EE
Confidence 578899999665 79999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCCcc
Q 032784 88 HVVVQPSLA 96 (133)
Q Consensus 88 hlv~~~~~~ 96 (133)
|++++.+|+
T Consensus 68 ~l~~~~~gg 76 (76)
T cd01803 68 HLVLRLRGG 76 (76)
T ss_pred EEEEEccCC
Confidence 999998775
No 17
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.76 E-value=3.9e-18 Score=115.53 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=68.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|.|+...|+. .++++++++||++||++|+++ .++++++|||+|+|++|+|+ +|++|||.+|+ +
T Consensus 2 m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~~-------~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~------~ 66 (78)
T cd01804 2 MNLNIHSTTGTR-FDLSVPPDETVEGLKKRISQR-------LKVPKERLALLHRETRLSSG-KLQDLGLGDGS------K 66 (78)
T ss_pred eEEEEEECCCCE-EEEEECCcCHHHHHHHHHHHH-------hCCChHHEEEEECCcCCCCC-cHHHcCCCCCC------E
Confidence 578899999966 579999999999999999999 89999999999999999999 99999999999 8
Q ss_pred EEEEecCCcc
Q 032784 87 MHVVVQPSLA 96 (133)
Q Consensus 87 lhlv~~~~~~ 96 (133)
+||+....+|
T Consensus 67 i~l~~~~~~~ 76 (78)
T cd01804 67 LTLVPTVEAG 76 (78)
T ss_pred EEEEeecccc
Confidence 9999877654
No 18
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.8e-19 Score=134.73 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=75.8
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEE
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlh 88 (133)
|.++.+.|+. ..+++++++||..+|++|++. ++||++||||||+|++|+|..||+||+|+..+ |+|
T Consensus 3 ifVk~l~~kt-i~~eve~~~ti~~~Kakiq~~-------egIp~dqqrlifag~qLedgrtlSDY~Iqkes------tl~ 68 (156)
T KOG0004|consen 3 IFVKTLTGKT-ITLEVEANDTIDNVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------TLH 68 (156)
T ss_pred cchhhccccc-eeeeecccccHHHHHHhhhcc-------cCCCchhhhhhhhhcccccCCccccccccccc------eEE
Confidence 5667788854 468999999999999999999 99999999999999999999999999999998 999
Q ss_pred EEecCCccchhhhhhhh
Q 032784 89 VVVQPSLAKTKTALKVD 105 (133)
Q Consensus 89 lv~~~~~~~~~~~k~~~ 105 (133)
|+++++|+++++||++-
T Consensus 69 l~l~l~Gg~kkrkkk~~ 85 (156)
T KOG0004|consen 69 LVLRLRGGAKKRKKKSY 85 (156)
T ss_pred EEEEecCCccccccccc
Confidence 99999999999877653
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.75 E-value=5.5e-18 Score=110.75 Aligned_cols=72 Identities=31% Similarity=0.495 Sum_probs=66.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|.|+..+|. +..+++++++||++||++|++. .|++++.|||+|+|+.|+|+.+|++|||++|+ +
T Consensus 1 i~i~vk~~~g~-~~~~~v~~~~tv~~lK~~i~~~-------~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~ 66 (72)
T cd01809 1 IEIKVKTLDSQ-THTFTVEEEITVLDLKEKIAEE-------VGIPVEQQRLIYSGRVLKDDETLSEYKVEDGH------T 66 (72)
T ss_pred CEEEEEeCCCC-EEEEEECCCCcHHHHHHHHHHH-------HCcCHHHeEEEECCEECCCcCcHHHCCCCCCC------E
Confidence 46889999994 4589999999999999999999 89999999999999999999999999999999 8
Q ss_pred EEEEec
Q 032784 87 MHVVVQ 92 (133)
Q Consensus 87 lhlv~~ 92 (133)
+|+++|
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999875
No 20
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.74 E-value=9.3e-18 Score=111.66 Aligned_cols=72 Identities=29% Similarity=0.383 Sum_probs=65.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCC--CCCceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPK--AVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi--~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
.|.|++.+|.. +.+++++++||.+||++|++. .++ ++++|||+|+|++|+|+.+|++|||++|+
T Consensus 2 ~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~~-------~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~------ 67 (77)
T cd01805 2 KITFKTLKQQT-FPIEVDPDDTVAELKEKIEEE-------KGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKD------ 67 (77)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHh-------hCCCCChhHeEEEECCEEccCCCCHHHcCCCCCC------
Confidence 57889999954 579999999999999999999 888 99999999999999999999999999999
Q ss_pred EEEEEecC
Q 032784 86 IMHVVVQP 93 (133)
Q Consensus 86 tlhlv~~~ 93 (133)
++|++++.
T Consensus 68 ~i~~~~~~ 75 (77)
T cd01805 68 FVVVMVSK 75 (77)
T ss_pred EEEEEEec
Confidence 78887653
No 21
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.74 E-value=6.2e-18 Score=110.21 Aligned_cols=69 Identities=28% Similarity=0.434 Sum_probs=63.9
Q ss_pred EeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEe
Q 032784 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 12 rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~ 91 (133)
|+.+|+ .+.+++++++||.+||++|+++ .++++++|+|+|+|+.|+|+.||++|||.+|+ +||+++
T Consensus 1 k~~~g~-~~~~~v~~~~tV~~lK~~i~~~-------~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~------~I~l~~ 66 (69)
T PF00240_consen 1 KTLSGK-TFTLEVDPDDTVADLKQKIAEE-------TGIPPEQQRLIYNGKELDDDKTLSDYGIKDGS------TIHLVI 66 (69)
T ss_dssp EETTSE-EEEEEEETTSBHHHHHHHHHHH-------HTSTGGGEEEEETTEEESTTSBTGGGTTSTTE------EEEEEE
T ss_pred CCCCCc-EEEEEECCCCCHHHhhhhcccc-------cccccccceeeeeeecccCcCcHHHcCCCCCC------EEEEEE
Confidence 568895 5689999999999999999999 89999999999999999999999999999999 899998
Q ss_pred cCC
Q 032784 92 QPS 94 (133)
Q Consensus 92 ~~~ 94 (133)
+++
T Consensus 67 k~~ 69 (69)
T PF00240_consen 67 KPR 69 (69)
T ss_dssp SSE
T ss_pred ecC
Confidence 763
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.74 E-value=5e-18 Score=113.02 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=61.6
Q ss_pred EEEEeC-CCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCC-CccccCCCCCCCCCCceEE
Q 032784 9 IKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 9 l~~rl~-~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~-~tLsd~~I~~g~~~~~~~t 86 (133)
|+|++. +| +...+++++++||++||++|+++ .|+|+++|||+|+||.|+|+ .+|++|+|++|+ +
T Consensus 1 l~v~~~~~g-~~~~l~v~~~~TV~~lK~~I~~~-------~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~------~ 66 (71)
T cd01796 1 ITVYTARSE-TTFSLDVDPDLELENFKALCEAE-------SGIPASQQQLIYNGRELVDNKRLLALYGVKDGD------L 66 (71)
T ss_pred CEEEECCCC-CEEEEEECCcCCHHHHHHHHHHH-------hCCCHHHeEEEECCeEccCCcccHHHcCCCCCC------E
Confidence 578899 77 55689999999999999999999 99999999999999999987 689999999999 7
Q ss_pred EEE
Q 032784 87 MHV 89 (133)
Q Consensus 87 lhl 89 (133)
+||
T Consensus 67 l~l 69 (71)
T cd01796 67 VVL 69 (71)
T ss_pred EEE
Confidence 887
No 23
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.74 E-value=7.4e-18 Score=114.28 Aligned_cols=74 Identities=22% Similarity=0.333 Sum_probs=68.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE--EecCeecCCCCccccCCCCCCCCCCce
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL--Iy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.|.|+..+|+.+ .+++++++||++||++|++. .++++++||| +|+|++|+|+++|++|||.+|+
T Consensus 3 ~~i~Vk~~~G~~~-~~~v~~~~TV~~lK~~I~~~-------~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs----- 69 (80)
T cd01792 3 WDLKVKMLGGNEF-LVSLRDSMTVSELKQQIAQK-------IGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGS----- 69 (80)
T ss_pred eEEEEEeCCCCEE-EEEcCCCCcHHHHHHHHHHH-------hCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCC-----
Confidence 7899999999665 68999999999999999999 8999999999 9999999999999999999999
Q ss_pred EEEEEEecCC
Q 032784 85 IIMHVVVQPS 94 (133)
Q Consensus 85 ~tlhlv~~~~ 94 (133)
++|++++..
T Consensus 70 -~l~l~~~~~ 78 (80)
T cd01792 70 -TVLLVVQNC 78 (80)
T ss_pred -EEEEEEEcc
Confidence 899998754
No 24
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.5e-17 Score=109.55 Aligned_cols=69 Identities=23% Similarity=0.411 Sum_probs=65.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|++++++|++| .++++|+++|+.+|+.|+++ +||||.+|||||+||++.|+.|-++|++.-|+ .+
T Consensus 2 ~iKvktLt~KeI-eidIep~DkverIKErvEEk-------eGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GS------Vl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-------EGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGS------VL 67 (70)
T ss_pred eeeEeeeccceE-EEeeCcchHHHHHHHHhhhh-------cCCCchhhhhhhccccccccccHHHhhhccce------eE
Confidence 478999999887 79999999999999999999 99999999999999999999999999999998 78
Q ss_pred EEE
Q 032784 88 HVV 90 (133)
Q Consensus 88 hlv 90 (133)
|++
T Consensus 68 Hlv 70 (70)
T KOG0005|consen 68 HLV 70 (70)
T ss_pred eeC
Confidence 985
No 25
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.67 E-value=4.3e-16 Score=107.44 Aligned_cols=79 Identities=15% Similarity=0.326 Sum_probs=74.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|.|+++..+|..+ .++|.+++|+..||++++++ .|+++++|||+|.|+.|+|++|+++|++.+++
T Consensus 9 ~~~i~I~v~~~~g~~~-~~~v~~~~~l~~l~~~y~~~-------~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d---- 76 (87)
T cd01763 9 SEHINLKVKGQDGNEV-FFKIKRSTPLKKLMEAYCQR-------QGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGD---- 76 (87)
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCCHHHHHHHHHHHH-------hCCCccceEEEECCeECCCCCCHHHcCCCCCC----
Confidence 6789999999999665 68999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
++|++++.+||
T Consensus 77 --~I~v~l~l~GG 87 (87)
T cd01763 77 --EIEVMLEQTGG 87 (87)
T ss_pred --EEEEEEecccC
Confidence 89999998875
No 26
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.67 E-value=2.3e-16 Score=103.13 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=63.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
|.|+|+.. | +..++++++++||++||++|++. .|+++++|||+|+|+.|+|+.+|++|+|.+|+ +
T Consensus 1 i~i~vk~~-g-~~~~i~v~~~~tv~~lK~~i~~~-------~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~------~ 65 (71)
T cd01812 1 IRVRVKHG-G-ESHDLSISSQATFGDLKKMLAPV-------TGVEPRDQKLIFKGKERDDAETLDMSGVKDGS------K 65 (71)
T ss_pred CEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHHh-------hCCChHHeEEeeCCcccCccCcHHHcCCCCCC------E
Confidence 46777776 6 55689999999999999999999 99999999999999999999999999999999 7
Q ss_pred EEEEe
Q 032784 87 MHVVV 91 (133)
Q Consensus 87 lhlv~ 91 (133)
+|++.
T Consensus 66 l~v~~ 70 (71)
T cd01812 66 VMLLE 70 (71)
T ss_pred EEEec
Confidence 88763
No 27
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.2e-17 Score=121.30 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=68.3
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEE
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlh 88 (133)
+-++...|+.+ .++++|++||..||.+|+.+ +|+|+++|+|||+||+|+|..||++|||+..+ |+|
T Consensus 3 ~~~~~~~GKT~-~le~EpS~ti~~vKA~i~~~-------~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~------Tl~ 68 (128)
T KOG0003|consen 3 IFVKTLTGKTI-TLEVEPSDTIDNVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLADYNIQKES------TLH 68 (128)
T ss_pred EEEEEeeCceE-EEEecccchHHHHHHHhccc-------cCCCHHHHHHHhcccccccCCcccccCccchh------hhh
Confidence 34566789554 68999999999999999999 99999999999999999999999999999988 999
Q ss_pred EEecCCcc
Q 032784 89 VVVQPSLA 96 (133)
Q Consensus 89 lv~~~~~~ 96 (133)
++.+++||
T Consensus 69 ~~~rL~GG 76 (128)
T KOG0003|consen 69 LVLRLRGG 76 (128)
T ss_pred hhHHHhcC
Confidence 99999988
No 28
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.65 E-value=1.6e-16 Score=108.29 Aligned_cols=55 Identities=27% Similarity=0.388 Sum_probs=49.0
Q ss_pred CcccHHHHHHHHHhcCCCCCccCCC-CCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEe
Q 032784 26 SASTVDMLKQRIVSDWPKGKTIVPK-AVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 26 p~~TV~~lK~~I~~~wP~~~~~~gi-~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~ 91 (133)
.++||++||++|+++.+ +++ ++++|||||+||+|+|++||++|||++|+ |+||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~-----egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gs------tlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLP-----DSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGS------TIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhc-----cCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCC------EEEEEe
Confidence 37899999999999922 245 59999999999999999999999999999 899985
No 29
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.58 E-value=4.8e-15 Score=99.84 Aligned_cols=68 Identities=21% Similarity=0.146 Sum_probs=59.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe---cCeecCCCCccccCCCCCCCCCCce
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS---SGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy---~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
.|.++. .| +.+++++++++||++||++|++. .++|+++||||| .|+.|+|+.+|++|+|.+|+
T Consensus 2 ~i~vk~-~g-~~~~v~v~~~~Tv~~lK~~i~~~-------tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~----- 67 (74)
T cd01813 2 PVIVKW-GG-QEYSVTTLSEDTVLDLKQFIKTL-------TGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNT----- 67 (74)
T ss_pred EEEEEE-CC-EEEEEEECCCCCHHHHHHHHHHH-------HCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCC-----
Confidence 344444 44 55689999999999999999999 999999999997 99999999999999999998
Q ss_pred EEEEEE
Q 032784 85 IIMHVV 90 (133)
Q Consensus 85 ~tlhlv 90 (133)
.++|+
T Consensus 68 -~i~lm 72 (74)
T cd01813 68 -KIMMM 72 (74)
T ss_pred -EEEEE
Confidence 67765
No 30
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.56 E-value=5.4e-15 Score=128.91 Aligned_cols=75 Identities=25% Similarity=0.350 Sum_probs=68.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
.|.|+||+.++ + +.|.|..+.||.++||.|+.+ .++++++|+|||+||+|+|++||..|||++|.
T Consensus 15 ~irV~Vkt~~d-k-~~~~V~~~ssV~qlKE~I~~~-------f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~------ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD-K-YEVNVASDSSVLQLKELIAQR-------FGAPPDQLVLIYAGRILKDDDTLKQYGIQDGH------ 79 (493)
T ss_pred eeEEEEecCCc-c-eeEecccchHHHHHHHHHHHh-------cCCChhHeeeeecCccccChhhHHHcCCCCCc------
Confidence 47788888877 3 579999999999999999999 89999999999999999999999999999999
Q ss_pred EEEEEecCCc
Q 032784 86 IMHVVVQPSL 95 (133)
Q Consensus 86 tlhlv~~~~~ 95 (133)
|+|||++...
T Consensus 80 TvHLVik~~~ 89 (493)
T KOG0010|consen 80 TVHLVIKSQP 89 (493)
T ss_pred EEEEEeccCC
Confidence 9999997664
No 31
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=9.9e-15 Score=124.53 Aligned_cols=72 Identities=31% Similarity=0.410 Sum_probs=64.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCC---CCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~g---i~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+.|+||+.+|+. +.++|++++||.+||++|++. .| +++++|||||+||+|+|++||++|+|++++
T Consensus 1 MkItVKtl~g~~-~~IeV~~~~TV~dLK~kI~~~-------~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~---- 68 (378)
T TIGR00601 1 MTLTFKTLQQQK-FKIDMEPDETVKELKEKIEAE-------QGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKD---- 68 (378)
T ss_pred CEEEEEeCCCCE-EEEEeCCcChHHHHHHHHHHh-------hCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCC----
Confidence 368899999955 579999999999999999999 77 999999999999999999999999999999
Q ss_pred eEEEEEEec
Q 032784 84 VIIMHVVVQ 92 (133)
Q Consensus 84 ~~tlhlv~~ 92 (133)
++++++.
T Consensus 69 --~Ivvmv~ 75 (378)
T TIGR00601 69 --FVVVMVS 75 (378)
T ss_pred --EEEEEec
Confidence 4555553
No 32
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.55 E-value=1.4e-14 Score=91.73 Aligned_cols=64 Identities=28% Similarity=0.455 Sum_probs=58.0
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
+.|++|..++ ...+++++++||++||++|++. .+++++.|||+|+|+.|+|+.||++|+|.+|+
T Consensus 1 ~~i~vk~~~~--~~~~~v~~~~tv~~lk~~i~~~-------~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDG--TITLEVKPSDTVSELKEKIAEL-------TGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCc--eEEEEECCCCcHHHHHHHHHHH-------HCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 3578888883 4579999999999999999999 89999999999999999999999999999874
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.54 E-value=2e-14 Score=97.28 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=59.2
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecC-CCCccccCCCC-CCCCCCce
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE-NNKTVGQCKIP-YGEVPGGV 84 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~-D~~tLsd~~I~-~g~~~~~~ 84 (133)
++|.=+...|.. ..+++++++||++||++|+++ .|+|+++||| |.|+.|. |++||++|++. +|+
T Consensus 3 ~~~~~~~~~~~t-~~l~v~~~~TV~~lK~kI~~~-------~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~----- 68 (75)
T cd01799 3 VSVEDAQSHTVT-IWLTVRPDMTVAQLKDKVFLD-------YGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGD----- 68 (75)
T ss_pred EEEeccccCCCe-EEEEECCCCcHHHHHHHHHHH-------HCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCC-----
Confidence 344445566645 469999999999999999999 9999999999 9999994 77999999998 778
Q ss_pred EEEEEEe
Q 032784 85 IIMHVVV 91 (133)
Q Consensus 85 ~tlhlv~ 91 (133)
++||.+
T Consensus 69 -~~~l~~ 74 (75)
T cd01799 69 -SAFLYI 74 (75)
T ss_pred -EEEEEe
Confidence 788754
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.42 E-value=7.2e-13 Score=84.73 Aligned_cols=67 Identities=28% Similarity=0.410 Sum_probs=59.4
Q ss_pred EEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEE
Q 032784 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (133)
Q Consensus 11 ~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv 90 (133)
++..+|.. ..+.+++++||++||++|++. .+++++.|+|+|+|+.|+|+.+|++|++.+++ ++|+.
T Consensus 2 v~~~~~~~-~~~~~~~~~ti~~lK~~i~~~-------~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~------~i~v~ 67 (69)
T cd01769 2 VKTLTGKT-FELEVSPDDTVAELKAKIAAK-------EGVPPEQQRLIYAGKILKDDKTLSDYGIQDGS------TLHLV 67 (69)
T ss_pred eEccCCCE-EEEEECCCChHHHHHHHHHHH-------HCcChHHEEEEECCcCCCCcCCHHHCCCCCCC------EEEEE
Confidence 45567744 478999999999999999999 89999999999999999999999999999988 67775
Q ss_pred e
Q 032784 91 V 91 (133)
Q Consensus 91 ~ 91 (133)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 4
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.28 E-value=7e-12 Score=105.26 Aligned_cols=66 Identities=24% Similarity=0.361 Sum_probs=61.2
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCC--CCCCceEEEecCeecCCCCccccCCCCCCCC
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVP--KAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~g--i~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~ 80 (133)
+.|+||++.|.++ ++++.|++||.+||++|+.. .| +++++|+|||+||+|+|+.|+.+|+|.+++|
T Consensus 1 m~lt~KtL~q~~F-~iev~Pe~tV~evK~kIet~-------~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~f 68 (340)
T KOG0011|consen 1 MKLTVKTLKQQTF-TIEVKPEDTVVEVKKKIETE-------KGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKF 68 (340)
T ss_pred CeeEeeeccCcee-EeecCcchhHHHHHHHHHhc-------cCCCCchhhheeeecceeccCCcchhhhccccCce
Confidence 3689999999776 79999999999999999999 55 9999999999999999999999999999994
No 36
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.28 E-value=9.3e-12 Score=89.36 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=59.5
Q ss_pred EeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec-CCCCccccCCCCCCCCCCceEEEEEE
Q 032784 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHVV 90 (133)
Q Consensus 12 rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L-~D~~tLsd~~I~~g~~~~~~~tlhlv 90 (133)
|+.-|.. .++|++++||.+||.+|... .++++++|||+|.|+.| +|.+||++|||..++ +++|.
T Consensus 11 r~~~~~~--~L~V~~~~TVg~LK~lImQ~-------f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgS------vl~Ll 75 (107)
T cd01795 11 RKVRGEK--ALLVSANQTLKELKIQIMHA-------FSVAPFDQNLSIDGKILSDDCATLGTLGVIPES------VILLK 75 (107)
T ss_pred ccCCCCc--eEEeCccccHHHHHHHHHHH-------hcCCcccceeeecCceeccCCccHHhcCCCCCC------EEEEE
Confidence 4445532 57999999999999999999 99999999999999999 566899999999999 78988
Q ss_pred ecCCc
Q 032784 91 VQPSL 95 (133)
Q Consensus 91 ~~~~~ 95 (133)
+..+-
T Consensus 76 ideP~ 80 (107)
T cd01795 76 ADEPI 80 (107)
T ss_pred ecCCc
Confidence 76543
No 37
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.24 E-value=2.7e-11 Score=79.60 Aligned_cols=71 Identities=30% Similarity=0.384 Sum_probs=63.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC-CceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~-~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
|.|+++..+|+ ...+.+.+++++..|++.++++ .++++ ++++|+|.|+.|++++|+++++|.+|+
T Consensus 1 I~i~v~~~~~~-~~~~~v~~~~~~~~l~~~~~~~-------~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d------ 66 (72)
T PF11976_consen 1 ITIKVRSQDGK-EIKFKVKPTTTVSKLIEKYCEK-------KGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGD------ 66 (72)
T ss_dssp EEEEEEETTSE-EEEEEEETTSCCHHHHHHHHHH-------HTTTT-TTEEEEETTEEE-TTSCHHHHT-STTE------
T ss_pred CEEEEEeCCCC-EEEEEECCCCcHHHHHHHHHHh-------hCCCccceEEEEECCEEcCCCCCHHHCCCCCCC------
Confidence 57889999995 4578999999999999999999 99999 999999999999999999999999999
Q ss_pred EEEEEe
Q 032784 86 IMHVVV 91 (133)
Q Consensus 86 tlhlv~ 91 (133)
++|+++
T Consensus 67 ~Idv~I 72 (72)
T PF11976_consen 67 TIDVII 72 (72)
T ss_dssp EEEEE-
T ss_pred EEEEEC
Confidence 788763
No 38
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.23 E-value=8.2e-11 Score=80.85 Aligned_cols=72 Identities=19% Similarity=0.282 Sum_probs=58.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE-EecCe-----ec-CCCCccccCCCCCCC
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGK-----IL-ENNKTVGQCKIPYGE 79 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL-Iy~Gk-----~L-~D~~tLsd~~I~~g~ 79 (133)
+.|.|.........+..+++++||.+||++++.. .|++++.||| +|.|+ .| +|+++|+.|++++|.
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~-------~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~ 74 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELV-------VGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGC 74 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHH-------HCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCC
Confidence 3445544433344456699999999999999999 9999999999 58999 46 788999999999999
Q ss_pred CCCceEEEEEEe
Q 032784 80 VPGGVIIMHVVV 91 (133)
Q Consensus 80 ~~~~~~tlhlv~ 91 (133)
+||++-
T Consensus 75 ------~IhVvD 80 (84)
T cd01789 75 ------RIHVID 80 (84)
T ss_pred ------EEEEEe
Confidence 899875
No 39
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=4.6e-11 Score=111.48 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
.+|++|++|. .+.+|.|+..+||.++|+.|.++ ..|+.+-|||||.||+|.|++++.+|+| +|. +
T Consensus 3 ~~v~vktld~-r~~t~~ig~q~ti~~~~d~~r~~-------~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk------~ 67 (1143)
T KOG4248|consen 3 PNVLVKTLDS-RTRTFIIGAQMTIKEFKDHIRAS-------VNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGK------V 67 (1143)
T ss_pred cceeeeeccc-ceeEEEechHHHHHHHHHHHHHh-------cccccccceeeecceeeccchhhhhccC-CCe------E
Confidence 5699999999 56689999999999999999999 9999999999999999999999999999 787 8
Q ss_pred EEEEecCCccchh
Q 032784 87 MHVVVQPSLAKTK 99 (133)
Q Consensus 87 lhlv~~~~~~~~~ 99 (133)
+||+-|++.+...
T Consensus 68 ~hlverppp~~~~ 80 (1143)
T KOG4248|consen 68 IHLVERPPPQTHL 80 (1143)
T ss_pred EEeeccCCCCccc
Confidence 9999998766443
No 40
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.14 E-value=5e-10 Score=70.47 Aligned_cols=72 Identities=28% Similarity=0.449 Sum_probs=64.2
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEE
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlh 88 (133)
+.+++..|+.+ .+++.++.+|..+|++|+.. .+++.++|+|.|.|+.|+|+.+|.+|+|..++ ++|
T Consensus 2 ~~~~~~~gk~~-~~~~~~~~~i~~~k~~i~~~-------~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~------~~~ 67 (75)
T KOG0001|consen 2 IFVKTLDGKTI-TLEVSPSDTIEVVKAKIRDK-------EGIPVDQQRLIFGGKPLEDGRTLADYNIQEGS------TLH 67 (75)
T ss_pred EEEEecCCCEE-EEEecCCCHHHHHHHHHHhh-------cCCCCeeEEEEECCEECcCCCcHHHhCCCCCC------EEE
Confidence 34556788554 78999999999999999999 99999999999999999999999999999988 899
Q ss_pred EEecCC
Q 032784 89 VVVQPS 94 (133)
Q Consensus 89 lv~~~~ 94 (133)
++.+..
T Consensus 68 l~~~~~ 73 (75)
T KOG0001|consen 68 LVLSLR 73 (75)
T ss_pred EEEecC
Confidence 988765
No 41
>PLN02560 enoyl-CoA reductase
Probab=98.95 E-value=2.4e-09 Score=89.36 Aligned_cols=65 Identities=22% Similarity=0.326 Sum_probs=56.3
Q ss_pred EEEEEeCCCCee--eeEEeCCcccHHHHHHHHHhcCCCCCccCCC-CCCceEEEec---C----eecCCCCccccCCCCC
Q 032784 8 DIKFRLYDGSDI--GPFRYSSASTVDMLKQRIVSDWPKGKTIVPK-AVTEIKLISS---G----KILENNKTVGQCKIPY 77 (133)
Q Consensus 8 ~l~~rl~~G~~i--~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi-~~~~qrLIy~---G----k~L~D~~tLsd~~I~~ 77 (133)
.|.++..+|+.+ .++++++++||++||++|+++ .++ ++++|||++. | +.|+|+++|+|+|+.+
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~-------~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~ 74 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKR-------KKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGD 74 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHH-------cCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCC
Confidence 466677888777 478999999999999999999 765 8999999983 4 4899999999999998
Q ss_pred CC
Q 032784 78 GE 79 (133)
Q Consensus 78 g~ 79 (133)
|+
T Consensus 75 gs 76 (308)
T PLN02560 75 GG 76 (308)
T ss_pred Cc
Confidence 88
No 42
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.89 E-value=4.7e-09 Score=70.57 Aligned_cols=69 Identities=23% Similarity=0.232 Sum_probs=52.2
Q ss_pred EEEEeCCCCeeeeEEeC-CcccHHHHHHHHHhcCCCCCccCCCCCCceEE--EecCeecCCCCccccCCCCCCCCCCceE
Q 032784 9 IKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~-p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL--Iy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
|..+-.+.+.+..++++ ++.||.+||+.|++.+ ..++++.||| ++.|+.|.|++||++||+.+|+
T Consensus 3 i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~------~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~------ 70 (77)
T cd01801 3 ILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSS------PQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGA------ 70 (77)
T ss_pred eeccccCcCceeecccCCCCccHHHHHHHHHHHc------CCCCcceeEEEeCCCCcccCCcccHhhcCCCCCC------
Confidence 33333331344434444 7899999999999882 2468999888 5899999999999999999888
Q ss_pred EEEE
Q 032784 86 IMHV 89 (133)
Q Consensus 86 tlhl 89 (133)
++|+
T Consensus 71 ~lyv 74 (77)
T cd01801 71 TLYV 74 (77)
T ss_pred EEEE
Confidence 6765
No 43
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.82 E-value=1.7e-08 Score=69.07 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=55.1
Q ss_pred EEEEEEeCCCC-eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec----C----eecCCCCccccCCCCC
Q 032784 7 IDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS----G----KILENNKTVGQCKIPY 77 (133)
Q Consensus 7 i~l~~rl~~G~-~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~----G----k~L~D~~tLsd~~I~~ 77 (133)
|.|.|...... ...+..+++++||.+||++|+.. .|++++.|||.+. + ...+|+++|..||+.+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~-------~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~d 74 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKL-------TGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKD 74 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHH-------HTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-ST
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHH-------hCCCcccEEEEEEecCCCccccccCCCccEeecCCCCC
Confidence 44555544331 35578999999999999999999 9999999999876 1 1237789999999999
Q ss_pred CCCCCceEEEEEEe
Q 032784 78 GEVPGGVIIMHVVV 91 (133)
Q Consensus 78 g~~~~~~~tlhlv~ 91 (133)
|. ++|+.=
T Consensus 75 g~------~i~V~D 82 (87)
T PF14560_consen 75 GM------RIHVVD 82 (87)
T ss_dssp TE------EEEEEE
T ss_pred CC------EEEEEe
Confidence 98 788763
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.68 E-value=1.1e-07 Score=56.09 Aligned_cols=66 Identities=24% Similarity=0.358 Sum_probs=56.8
Q ss_pred EeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEe
Q 032784 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 12 rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~ 91 (133)
+..+|. ...+.+.+.+|+.+||++|.++ .+.+++.++|.+.|+.+++...+.++++.+++ ++++..
T Consensus 3 ~~~~~~-~~~~~~~~~~tv~~l~~~i~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~i~~~~ 68 (69)
T cd00196 3 KLNDGK-TVELLVPSGTTVADLKEKLAKK-------LGLPPEQQRLLVNGKILPDSLTLEDYGLQDGD------ELVLVP 68 (69)
T ss_pred EecCCC-EEEEEcCCCCcHHHHHHHHHHH-------HCcChHHeEEEECCeECCCCCcHHHcCCCCCC------EEEEEe
Confidence 344563 4468899999999999999999 78999999999999999999999899999998 677753
No 45
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.65 E-value=9.4e-08 Score=70.10 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=60.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCC-CCce
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV 84 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~-~~~~ 84 (133)
++++.||=-.- . +-+++.++.||.+||++|+.- ...|+++|||+-.+.+|+|++||+|||+..... ++.+
T Consensus 2 dvFlmIrR~KT-T-iF~dakes~tVlelK~~iegI-------~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p 72 (119)
T cd01788 2 DVFLMIRRHKT-T-IFTDAKESTTVYELKRIVEGI-------LKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP 72 (119)
T ss_pred ceEEEEEecce-E-EEeecCCcccHHHHHHHHHHH-------hcCChhHheeecCceeecccccHHHcCccccccccCCC
Confidence 35566654433 3 346999999999999999998 889999999997788999999999999954221 2333
Q ss_pred EEEEEEecC
Q 032784 85 IIMHVVVQP 93 (133)
Q Consensus 85 ~tlhlv~~~ 93 (133)
-++-|.+|.
T Consensus 73 A~vgLa~r~ 81 (119)
T cd01788 73 ATVGLAFRS 81 (119)
T ss_pred CeEEEEEec
Confidence 367777764
No 46
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.1e-07 Score=78.98 Aligned_cols=72 Identities=21% Similarity=0.348 Sum_probs=61.2
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+-|.|+-.+...-.+++|+.+.+|.+||+.++.+ .|++++++|+||+||.|.|+.|+..|.+...+ .
T Consensus 3 ~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~-------~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs------~ 69 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKR-------QGVPADQLRVIFAGKELSNDTTVQNCDLSQQS------A 69 (446)
T ss_pred EEEEeCCccccCceeEEEecCCCHHHHHHHHHHh-------hCCChhheEEEEeccccccCceeecccccccc------h
Confidence 4466664444455689999999999999999999 99999999999999999999999999887666 5
Q ss_pred EEEEe
Q 032784 87 MHVVV 91 (133)
Q Consensus 87 lhlv~ 91 (133)
+|+++
T Consensus 70 ~hi~~ 74 (446)
T KOG0006|consen 70 THIML 74 (446)
T ss_pred hhhhc
Confidence 78773
No 47
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.45 E-value=4e-07 Score=62.41 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=40.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC---eec--CCCCccccCCCCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KIL--ENNKTVGQCKIPYGE 79 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G---k~L--~D~~tLsd~~I~~g~ 79 (133)
+.+-||||..+|... +++++++|+.+|+++|++. .+++.+.|.|...- ..| .+++||+++||+.|+
T Consensus 3 ~~milRvrS~dG~~R--ie~~~~~t~~~L~~kI~~~-------l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 3 SSMILRVRSKDGMKR--IEVSPSSTLSDLKEKISEQ-------LSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp ---EEEEE-SSEEEE--EEE-TTSBHHHHHHHHHHH-------S---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred ccEEEEEECCCCCEE--EEcCCcccHHHHHHHHHHH-------cCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 467899999999654 6899999999999999999 88888888873321 234 578999999999999
No 48
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.36 E-value=1.2e-06 Score=62.30 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=46.1
Q ss_pred EEEEeCCCCeeeeEEeC--CcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccC
Q 032784 9 IKFRLYDGSDIGPFRYS--SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~--p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~ 73 (133)
|.||..++-.=.+++|. .+.||..||+.|.+..| ...+-..+||||+||.|.|...|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p-----~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLP-----PEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcC-----CCCccccEEeeecCcccCccchhhhh
Confidence 44454554221357887 78999999999999976 34678899999999999999887654
No 49
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=98.07 E-value=4e-05 Score=51.35 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=54.5
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCc-eEEE--ecCeecCCC--CccccCCCCC
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLI--SSGKILENN--KTVGQCKIPY 77 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~-qrLI--y~Gk~L~D~--~tLsd~~I~~ 77 (133)
..+.+.|+||+.+|+.+ .-.|.+++||.+|.+-|... ...+... .+|+ |-.|.|.++ .||+|+|+..
T Consensus 3 ~~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~~-------~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p 74 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVESQ-------LFSPEESDFELITAFPRRELTDEDSKTLEEAGLLP 74 (82)
T ss_dssp TSSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHHH-------HHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSS
T ss_pred CCCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHHh-------cCCCCCccEEEEeCCCCcCCCccccccHHHhcCCC
Confidence 36789999999999765 67999999999999999888 3333333 7776 567788544 6999999887
Q ss_pred CC
Q 032784 78 GE 79 (133)
Q Consensus 78 g~ 79 (133)
+.
T Consensus 75 ~~ 76 (82)
T PF00789_consen 75 SA 76 (82)
T ss_dssp CE
T ss_pred Ce
Confidence 76
No 50
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00026 Score=50.70 Aligned_cols=78 Identities=15% Similarity=0.282 Sum_probs=65.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.|+|++.=-+| .+..|.+.-++....|.+.-.++ .|++.+++|++|.|+.+.+.+|-++++..+|+
T Consensus 19 ~hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~r-------~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D----- 85 (99)
T KOG1769|consen 19 EHINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCER-------QGLSMNSLRFLFDGQRIRETHTPADLEMEDGD----- 85 (99)
T ss_pred ceEEEEEecCCC-CEEEEEeecCChHHHHHHHHHHH-------cCCccceEEEEECCcCcCCCCChhhhCCcCCc-----
Confidence 456666665455 55579999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCcc
Q 032784 85 IIMHVVVQPSLA 96 (133)
Q Consensus 85 ~tlhlv~~~~~~ 96 (133)
.|-++....+|
T Consensus 86 -~Iev~~~q~gG 96 (99)
T KOG1769|consen 86 -EIEVVQEQTGG 96 (99)
T ss_pred -EEEEEeecccC
Confidence 66666554444
No 51
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.60 E-value=0.00014 Score=52.36 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=54.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe-cC-eecCCCCccccCCCCCCCC-CC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-SG-KILENNKTVGQCKIPYGEV-PG 82 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy-~G-k~L~D~~tLsd~~I~~g~~-~~ 82 (133)
++++++|--.. .| -+..+++.||-+||.+++.- ..-|++.|||.- .- +.|+|.+||+|||...... |+
T Consensus 2 ~~f~~VrR~kt-ti-f~da~es~tV~elK~~l~gi-------~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q 72 (110)
T KOG4495|consen 2 DVFLRVRRHKT-TI-FTDAKESSTVFELKRKLEGI-------LKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQ 72 (110)
T ss_pred ceeeeeeecce-eE-EeecCccccHHHHHHHHHHH-------HhCCCcchheeecCHHHHhhccchhhhccccccccccC
Confidence 35556554333 34 46999999999999999988 677999999976 33 5789999999998865442 44
Q ss_pred ceEEEEE
Q 032784 83 GVIIMHV 89 (133)
Q Consensus 83 ~~~tlhl 89 (133)
++-++-|
T Consensus 73 ~pA~vgL 79 (110)
T KOG4495|consen 73 APATVGL 79 (110)
T ss_pred CCceeee
Confidence 4444444
No 52
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.51 E-value=0.0011 Score=44.54 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=51.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeecCC---CCccccCCCCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYGE 79 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L~D---~~tLsd~~I~~g~ 79 (133)
+...|.||+.+|+.+ ...|.+++||.+|.+-|... .+......+|+ |-.|.|.+ +.||.++|+-.+.
T Consensus 3 ~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~~-------~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~ 74 (80)
T smart00166 3 DQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSAA-------LTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSS 74 (80)
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHc-------ccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCce
Confidence 578899999999765 57999999999999999766 34444556664 55677754 4799999986554
No 53
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00029 Score=62.11 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=61.4
Q ss_pred EEeCCCCeeeeEE-eCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEE
Q 032784 11 FRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (133)
Q Consensus 11 ~rl~~G~~i~~~~-v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhl 89 (133)
|...-|.++++++ ++.++|+..+|+++.+. .|.+|+.||+++.|+.+.|+--+...+|++|. |+||
T Consensus 6 v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~L-------TgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~------~lmM 72 (473)
T KOG1872|consen 6 VIVKWGGKKYPVETLSTDETPSVLKAQLFAL-------TGVPPERQKVMVKGGLAKDDVDWGALQIKPNE------TLMM 72 (473)
T ss_pred EeeeecCccccceeccCCCchHHHHHHHHHh-------cCCCccceeEEEecccccccccccccccCCCC------EEEe
Confidence 3444455778877 99999999999999999 99999999999999999999888899999998 8888
Q ss_pred EecCC
Q 032784 90 VVQPS 94 (133)
Q Consensus 90 v~~~~ 94 (133)
+-.+-
T Consensus 73 mGt~e 77 (473)
T KOG1872|consen 73 MGTAE 77 (473)
T ss_pred ecccc
Confidence 76443
No 54
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.45 E-value=0.0012 Score=44.93 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=51.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeec-CCCCccccCCCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYG 78 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L-~D~~tLsd~~I~~g 78 (133)
....|.||+.+|+.+ ...|..++||.+|.+-|....|. .......|+ |=.|.| +++.||+|+|+.+.
T Consensus 3 p~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~~~~~------~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 3 PTTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVNARPE------FAARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred CeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHhCCC------CCCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 357899999999766 57999999999999999988332 123455665 567777 45789999999854
No 55
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.37 E-value=0.0014 Score=45.02 Aligned_cols=63 Identities=19% Similarity=0.190 Sum_probs=51.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec---C-e-ecCCCCccccCCCCCC
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G-K-ILENNKTVGQCKIPYG 78 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~---G-k-~L~D~~tLsd~~I~~g 78 (133)
|.|+++-..+++. .+.|+|..+|..+|++|... .+++- +|||-|. | | .|.+..+|++|||-.+
T Consensus 1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~~-------~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~ 68 (80)
T cd01811 1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRRS-------RNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSK 68 (80)
T ss_pred CEEEeeecCCCce-EEEeCCcchHHHHHHHHHHh-------hCccc-ceEEEeecCCcccccccccccHhhhcceec
Confidence 4677777888776 58999999999999999999 45554 9999983 3 2 5689999999999644
No 56
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.32 E-value=0.0029 Score=42.12 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=49.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeecC---CCCccccCCCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPY 77 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L~---D~~tLsd~~I~~ 77 (133)
...|+||+.+|+.+ .-.|.+++||.+|.+-|... .. .....+|+ |-.|.+. ++.||.++|+..
T Consensus 2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~~-------~~-~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~ 69 (77)
T cd01767 2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVESN-------GP-PAEPFTLMTSFPRRVLTDLDYELTLQEAGLVN 69 (77)
T ss_pred cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHc-------CC-CCCCEEEEeCCCCccCCCCCccCcHHHcCCcc
Confidence 46899999999665 57999999999999999887 22 24556665 4467774 478999999983
No 57
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=2e-05 Score=67.12 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=63.5
Q ss_pred CceEEEEEEeCCCCe-eeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~-i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
+..+.+-++..+.+. ...+..+-..||++||..++.-.|. ..-..+|||||+||.|.|...|+|.-++...
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPs-----kpl~~dqrliYsgkllld~qcl~d~lrkq~k--- 78 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPS-----KPLELDQRLIYSGKLLLDHQCLTDWLRKQVK--- 78 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCC-----CCchhhHHHHhhccccccchhHHHHHHHHHH---
Confidence 445666666655532 2245666788999999999999884 3456789999999999999999998776543
Q ss_pred ceEEEEEEecCCccchh
Q 032784 83 GVIIMHVVVQPSLAKTK 99 (133)
Q Consensus 83 ~~~tlhlv~~~~~~~~~ 99 (133)
-++.|||+..+..-+.
T Consensus 79 -~Hv~hlvcnsk~v~~~ 94 (391)
T KOG4583|consen 79 -EHVKHLVCNSKEVVTQ 94 (391)
T ss_pred -HHHHHHhcCCCCCCCc
Confidence 3468998876665444
No 58
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.29 E-value=0.0026 Score=43.88 Aligned_cols=67 Identities=13% Similarity=0.295 Sum_probs=54.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC--eecC--------CCCccccC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE--------NNKTVGQC 73 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G--k~L~--------D~~tLsd~ 73 (133)
.+.+.|.||+.+|+.+ .-.|..++||++|..-|... +..++...|+++= |.+. .+.||++.
T Consensus 2 ~~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~~--------~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~ea 72 (85)
T cd01774 2 PDTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFSL--------KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEA 72 (85)
T ss_pred CceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhC--------CCCCCcEEEecCCCCccccccccccCcCCCCHHHc
Confidence 3578999999999765 57999999999999999654 3456788998876 7885 36799999
Q ss_pred CCCCCC
Q 032784 74 KIPYGE 79 (133)
Q Consensus 74 ~I~~g~ 79 (133)
||....
T Consensus 73 GL~~s~ 78 (85)
T cd01774 73 GLSNSE 78 (85)
T ss_pred CCCCcc
Confidence 998655
No 59
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.29 E-value=0.002 Score=49.85 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=60.0
Q ss_pred EEEEEEeCCCC---eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCce-EEEe-cCeec--CCCCccccCCCCCCC
Q 032784 7 IDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEI-KLIS-SGKIL--ENNKTVGQCKIPYGE 79 (133)
Q Consensus 7 i~l~~rl~~G~---~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~q-rLIy-~Gk~L--~D~~tLsd~~I~~g~ 79 (133)
|+|-+.+.+|- ....+.+.++.||.+|+..|.+. .+++...| .|.+ .|+.| .++..++.+.-...+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~-------~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSER-------LPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhh-------cCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 57888889994 34468889999999999999999 77887774 4544 35555 566666666544433
Q ss_pred CCCceEEEEEEecCCccc
Q 032784 80 VPGGVIIMHVVVQPSLAK 97 (133)
Q Consensus 80 ~~~~~~tlhlv~~~~~~~ 97 (133)
...+++++++++.||+
T Consensus 74 --~~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 74 --SDFITLRLSLRLRGGK 89 (162)
T ss_pred --CCceEEEEEEeccCCC
Confidence 2467899999999874
No 60
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.24 E-value=0.001 Score=44.70 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=46.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCC---ceEEE-ecCeecCCCCccccCCCCCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT---EIKLI-SSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~---~qrLI-y~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+.|+|....| ..+.+.+..+.+|++|...|.+.-- . .+.... ..+|. -.|+.|+++.||++++|.+|+
T Consensus 2 ~~rVtv~~~~~-~~~Dl~lP~~vpv~~li~~l~~~~~--~--~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 2 LCRVTVDAGNG-RQVDLALPADVPVAELIPELVELLG--L--PGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS-------S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEEEEEcCCC-cEEEEEcCCCCcHHHHHHHHHHHhC--C--ccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 35677777665 4458999999999999999888721 1 111222 46776 789999999999999999999
No 61
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.12 E-value=0.0048 Score=41.68 Aligned_cols=66 Identities=12% Similarity=0.193 Sum_probs=50.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeecCC---CCccccCCCCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYGE 79 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L~D---~~tLsd~~I~~g~ 79 (133)
....|.||+.+|+.+ .-.|..++|+.+|.+-|....+ . .....|+ |-.|.+.+ +.||.++|+....
T Consensus 3 ~~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~~~~-------~-~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa 73 (79)
T cd01772 3 TETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVELNTG-------N-GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSA 73 (79)
T ss_pred cEEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHHcCC-------C-CCCEEEEeCCCCeECCcccccCCHHHCCCCCce
Confidence 568899999999654 5799999999999999998732 1 2445564 45677753 4899999998655
No 62
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00017 Score=48.40 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=54.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
++.+.-.=|+++ -+.+.+++||+++|..|+++ .|-.++.+.|---+.+++|.-+|++|.|.+|-
T Consensus 3 ev~~nDrLGKKV-RvKCn~dDtiGD~KKliaaQ-------tGT~~~kivl~k~~~i~kd~I~L~dyeihdg~ 66 (73)
T KOG3493|consen 3 EVVLNDRLGKKV-RVKCNTDDTIGDLKKLIAAQ-------TGTRPEKIVLKKWYTIFKDHITLSDYEIHDGM 66 (73)
T ss_pred eehhhhhcCceE-EEEeCCcccccCHHHHHHHh-------hCCChhHhHHHhhhhhhhcccceeeEEeccCc
Confidence 444444557676 47999999999999999999 99999999887777788999999999999875
No 63
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.0018 Score=52.20 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=58.6
Q ss_pred CceEEEEEEeC-CCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 4 EELIDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 4 ~~~i~l~~rl~-~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
..+..++.++. +++++ -+.+..-+||.++|.++.++ ++.++-.||+.|+|++|-|..-|.+|+|+.|.
T Consensus 143 ~~e~~lk~rlTtT~~d~-~lta~~~Dtv~eik~~L~Aa-------eg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~ 211 (231)
T KOG0013|consen 143 HTEPILKLRLTTTREDF-WLTAPHYDTVGEIKRALRAA-------EGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQ 211 (231)
T ss_pred CCCcchHHHhhhhhhhe-eecccCcCcHHHHHHHHHHh-------hccchhhheeeccCCceeccccceeeeecCCC
Confidence 34566777777 56454 57888889999999999999 89999999999999999999999999999885
No 64
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.013 Score=41.76 Aligned_cols=66 Identities=18% Similarity=0.339 Sum_probs=57.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.|+|++--.+|..+ -+++..+++...|-+..+.+ .|-..++.|++|.|+.++-++|-.|++..+++
T Consensus 24 hinLkvv~qd~tel-fFkiKktT~f~klm~af~~r-------qGK~m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 24 HINLKVVDQDGTEL-FFKIKKTTTFKKLMDAFSRR-------QGKNMSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ccceEEecCCCCEE-EEEEeccchHHHHHHHHHHH-------hCcCcceeEEEEcceecCCCCChhhcCCccch
Confidence 45666655577555 58999999999999999999 89999999999999999999999999999888
No 65
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.15 E-value=0.05 Score=37.48 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=54.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
+|++-|+--.| ..+.+.++.-.+|..|-..+++. ..-......-.++|..-.++.|.++..|.+|+|.+|+
T Consensus 6 kVTvD~t~y~g-~~yDLrl~d~~pikklIdivwe~--~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 6 KVTVDFTNYNG-GTYDLRLPDYLPIKKLIDIVWES--LKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEEeEecCC-ceEEEeccccchHHHHHHHHHHH--hhccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 56777777888 45688999888888887777766 1111122334688999999999999999999999999
No 66
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.14 E-value=0.068 Score=36.40 Aligned_cols=67 Identities=21% Similarity=0.227 Sum_probs=52.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeecC---CCCccccCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPYG 78 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L~---D~~tLsd~~I~~g 78 (133)
+..+.|.||+.+|+.+ .-.|..++++.+|-.-|... |.+....+|+ |=-|.+. -+.||.++|+...
T Consensus 2 ~~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~~--------~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~ 72 (80)
T cd01771 2 EPISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVASK--------GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQ 72 (80)
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhc--------CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCC
Confidence 5678999999999655 57999999999999999765 4556677885 5566673 3569999999866
Q ss_pred C
Q 032784 79 E 79 (133)
Q Consensus 79 ~ 79 (133)
.
T Consensus 73 ~ 73 (80)
T cd01771 73 E 73 (80)
T ss_pred c
Confidence 5
No 67
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.71 E-value=0.033 Score=49.21 Aligned_cols=115 Identities=17% Similarity=0.263 Sum_probs=78.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE--EecCeecCC---CCccccCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILEN---NKTVGQCKIPYG 78 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL--Iy~Gk~L~D---~~tLsd~~I~~g 78 (133)
-+.+.|.|||.+|..+.. .|..++-...|++.|... .++.....-| -|--|...| ++||.++.+-..
T Consensus 312 ~d~~rLqiRLPdGssfte-~Fps~~vL~~vr~yvrq~-------~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~ps 383 (506)
T KOG2507|consen 312 ADDVRLQIRLPDGSSFTE-KFPSTSVLRMVRDYVRQN-------QTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPS 383 (506)
T ss_pred cceeEEEEecCCccchhh-cCCcchHHHHHHHHHHhc-------ccccccceeeccccccccccchhhhhhHHHhccCCc
Confidence 368999999999988754 888888889999999977 5566655555 566776633 369999998765
Q ss_pred CCCCceEEEEEEecCCccchhhhhhhhhhhhhhhCCCCC-cchhhhHhhhhhccC
Q 032784 79 EVPGGVIIMHVVVQPSLAKTKTALKVDAFWLLVLSLPFG-FTLWALISPFWSNVG 132 (133)
Q Consensus 79 ~~~~~~~tlhlv~~~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 132 (133)
. .+-++-+.++.....-..+..+|+.+.---++ ++||++++-|+.+.+
T Consensus 384 a------alvvlpk~r~t~s~~gss~s~sw~ll~pv~~gl~altr~~s~f~~~f~ 432 (506)
T KOG2507|consen 384 A------ALVVLPKKRATVSQRGSSYSESWNLLDPVSGGLFALTRRVSSFANPFS 432 (506)
T ss_pred c------eEEEEecCCcceEEecCccchhhcccCccchhHHHHHHHHHHHhccCC
Confidence 5 24444445555555433444556544433333 578999998887654
No 68
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.68 E-value=0.029 Score=37.93 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=51.0
Q ss_pred eCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCC-CCCCCCCCceEEEEEEecCCccc
Q 032784 24 YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK-IPYGEVPGGVIIMHVVVQPSLAK 97 (133)
Q Consensus 24 v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~-I~~g~~~~~~~tlhlv~~~~~~~ 97 (133)
|.++++|.+|++.+... | ..+.-....|.++|+.|+|...|++.. +.++. +++|+..+=..+
T Consensus 1 v~~~d~v~dvrq~L~~~-~-----~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~------~L~lve~pYt~r 63 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-P-----ETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGC------VLELVEEPYTER 63 (76)
T ss_pred CChhhHHHHHHHHHHhC-c-----cccceeEEEEEECCCccCCchhhhhhhCCCCCc------EEEEEecCCCHH
Confidence 46889999999999988 2 567888999999999999999988874 77666 789987666543
No 69
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=95.55 E-value=0.05 Score=36.01 Aligned_cols=58 Identities=10% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.++ ....+.+.|++++.+|=++..++ .++++++-.|.|+++.|+-+.+++-.|+.+|.
T Consensus 4 ~~~-rr~~vkvtp~~~l~~VL~eac~k-------~~l~~~~~~L~h~~k~ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 4 YNF-RRFKVKVTPNTTLNQVLEEACKK-------FGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNA 61 (65)
T ss_dssp TTS--EEEE---TTSBHHHHHHHHHHH-------TT--GGG-EEEETTEEESSS-BHHHH---SS-
T ss_pred cCC-cEEEEEECCCCCHHHHHHHHHHH-------cCCCccceEEEECCEEeccccceeecCCCCCC
Confidence 455 44568999999999999999999 89999999999999999999999999999887
No 70
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.25 E-value=0.29 Score=33.82 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=52.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeec---CCCCccccCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPYG 78 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L---~D~~tLsd~~I~~g 78 (133)
...-.|.||+.+|+.+ .-.|..++++.+|-.-|... |.+++...|+ |=-|.+ +-+.||.++|+...
T Consensus 3 ~~~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~~--------g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~ 73 (82)
T cd01773 3 GPKARLMLRYPDGKRE-QIALPEQAKLLALVRHVQSK--------GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQ 73 (82)
T ss_pred CCeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhc--------CCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCC
Confidence 4567899999999554 67999999999999988886 3466777776 345555 33579999999876
Q ss_pred C
Q 032784 79 E 79 (133)
Q Consensus 79 ~ 79 (133)
.
T Consensus 74 ~ 74 (82)
T cd01773 74 E 74 (82)
T ss_pred c
Confidence 6
No 71
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.067 Score=43.32 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=48.9
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE-EecC-----eec-CCCCccccCCCCCCCCCCceEEEEEEec
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSG-----KIL-ENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL-Iy~G-----k~L-~D~~tLsd~~I~~g~~~~~~~tlhlv~~ 92 (133)
+-.+++++||+++|.+++-. .|.+++..+| +|.| -.| ++++.|..|+..+|- .+|++=.
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~-------~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~------rihviD~ 81 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELL-------TGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGL------RIHVIDS 81 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhh-------hCCCccceEEEEEcCCCceeeeccCCcccccccCCCCce------EEEEEec
Confidence 35678999999999999999 9999999999 6776 245 566789999998887 7898743
No 72
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=94.34 E-value=0.094 Score=47.34 Aligned_cols=116 Identities=18% Similarity=0.301 Sum_probs=54.0
Q ss_pred eEEEEEEeCC-CCeeeeEEeCCcccHHHHHHHHHhcCCCCCc-cCCCCCCceEEEe-c---Ce-ecCCC-----------
Q 032784 6 LIDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS-S---GK-ILENN----------- 67 (133)
Q Consensus 6 ~i~l~~rl~~-G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~-~~gi~~~~qrLIy-~---Gk-~L~D~----------- 67 (133)
.+.|.+...+ |..-+++.|=.++||.++|+||-+.-=++.+ .....+++.-|-+ . |+ +|+|.
T Consensus 189 ~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wk 268 (539)
T PF08337_consen 189 TLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWK 268 (539)
T ss_dssp EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEE
T ss_pred EEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCce
Confidence 4455544332 3334578888999999999998765322211 2334567777743 2 33 56654
Q ss_pred --CccccCCCCCCCCCCceEEEEEEecCCccchh-hhhhhhhh----hhhhhCCCCCcchhhhHhhh
Q 032784 68 --KTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK-TALKVDAF----WLLVLSLPFGFTLWALISPF 127 (133)
Q Consensus 68 --~tLsd~~I~~g~~~~~~~tlhlv~~~~~~~~~-~~k~~~~~----~~~~~~~~~~~~~~~~~~~~ 127 (133)
.||+.|+|++|+ +|-|+.+...+-.. ........ -..+.....+..+||++.|-
T Consensus 269 rLNTL~HY~V~dga------~vaLv~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~HLVk~~ 329 (539)
T PF08337_consen 269 RLNTLAHYKVPDGA------TVALVPKQHSSYNQSYSSSPDSSRSRTPMISDDQESGTKYWHLVKPH 329 (539)
T ss_dssp E--BHHHHT--TTE------EEEEEES-------------------------------EEESSS---
T ss_pred EeccHhhcCCCCCc------eEEEeeccccccccCcccCCCcccccCccccccccccccccCccCch
Confidence 278899999998 77777654311110 00000000 11222234577899998774
No 73
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=93.68 E-value=0.19 Score=43.59 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=51.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeec-CCCCccccCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYGE 79 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L-~D~~tLsd~~I~~g~ 79 (133)
+..-+|.||+-+|+.+ ...|+-+.||.+|+..|...=|. .+.+.+-|+ |=-|.| +|+.||+++|+.+..
T Consensus 303 ~PtTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~aRp~------~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDTARPG------DSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSV 374 (380)
T ss_pred CCcceEEEEecCCcee-eeeccCcccHHHHHHHHHhcCCC------CcCCceeeeecCCCcccCCcchhHHhccchhhh
Confidence 4467899999999766 57999999999999999988333 233344444 345677 667899999998543
No 74
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=93.14 E-value=0.88 Score=29.62 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=49.9
Q ss_pred EEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCC-CCceEEEe----cC--eecCCCCccccCCCCCCCCCCc
Q 032784 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKA-VTEIKLIS----SG--KILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 11 ~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~-~~~qrLIy----~G--k~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+++++|. ...+++++++|+.++=++|.++ .++. .+-.=|.| .| ..|+.+++|.+.....+.
T Consensus 1 V~llD~~-~~~~~v~~~~t~~~l~~~v~~~-------l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~---- 68 (80)
T PF09379_consen 1 VRLLDGT-TKTFEVDPKTTGQDLLEQVCDK-------LGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNP---- 68 (80)
T ss_dssp EEESSEE-EEEEEEETTSBHHHHHHHHHHH-------HTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSS----
T ss_pred CCCcCCC-cEEEEEcCCCcHHHHHHHHHHH-------cCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCC----
Confidence 5789994 5689999999999999999998 5543 44456666 23 357888999988776222
Q ss_pred eEEEEEEec
Q 032784 84 VIIMHVVVQ 92 (133)
Q Consensus 84 ~~tlhlv~~ 92 (133)
+.++|+.++
T Consensus 69 ~~~l~frvk 77 (80)
T PF09379_consen 69 PFTLYFRVK 77 (80)
T ss_dssp SEEEEEEES
T ss_pred CEEEEEEEE
Confidence 346777654
No 75
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.58 E-value=1.3 Score=28.74 Aligned_cols=62 Identities=13% Similarity=0.291 Sum_probs=42.7
Q ss_pred CCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEe
Q 032784 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 16 G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~ 91 (133)
|.....+++++..||.+|.+.+.+++|.. .+.......+.-+|+... .+.-+++|+ .+.++-
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~---~~~~~~~~~v~vNg~~v~-----~~~~l~~gD------~v~i~p 75 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL---LEELLARVRIAVNGEYVR-----LDTPLKDGD------EVAIIP 75 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH---HHhhhhcEEEEECCeEcC-----CCcccCCCC------EEEEeC
Confidence 44444677777899999999999996531 112234567777888887 345677888 677653
No 76
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=91.43 E-value=0.53 Score=31.63 Aligned_cols=45 Identities=9% Similarity=0.002 Sum_probs=38.7
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G 61 (133)
+++.+++| +...+.+.|++||.++=+++-++ .++.++.-.|...|
T Consensus 2 ~~V~LPng-~~t~V~vrpg~ti~d~L~~~c~k-------r~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNG-QRTVVPVRPGMSVRDVLAKACKK-------RGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCC-CeEEEEECCCCCHHHHHHHHHHH-------cCCCHHHEEEEEec
Confidence 57889999 44578999999999999999999 89999988876654
No 77
>smart00455 RBD Raf-like Ras-binding domain.
Probab=91.12 E-value=0.63 Score=30.88 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=39.6
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G 61 (133)
.++.+.+|.. ..+.+.|++||.++=+.+-++ .|+.++...+...|
T Consensus 2 ~~v~LP~~~~-~~V~vrpg~tl~e~L~~~~~k-------r~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQR-TVVKVRPGKTVRDALAKALKK-------RGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCE-EEEEECCCCCHHHHHHHHHHH-------cCCCHHHEEEEEcC
Confidence 5678899954 578999999999999999999 99999999998865
No 78
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=89.38 E-value=1.1 Score=31.23 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=35.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC---CceEEEe
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV---TEIKLIS 59 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~---~~qrLIy 59 (133)
..+|+..+| .+.-+.+.|+..+.+|++.|.++ .++.. +...|-|
T Consensus 2 ~FK~~~~~G-rvhRf~~~~s~~~~~L~~~I~~R-------l~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKG-RVHRFRLRPSESLEELRTLISQR-------LGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCC-CEEEEEecCCCCHHHHHHHHHHH-------hCCccccCCcccEEE
Confidence 367888999 55678999999999999999999 77776 4566655
No 79
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=89.32 E-value=3.6 Score=27.45 Aligned_cols=67 Identities=13% Similarity=0.244 Sum_probs=43.4
Q ss_pred CCCeeeeEEeCCcccHHHHHHHHHhcCCCCCc----cCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEE
Q 032784 15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKT----IVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (133)
Q Consensus 15 ~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~----~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv 90 (133)
.|.....++++ ..||.+|.+.+.++.|.... ..+..-+...+..+|+..+++.. .-+++|+ .+.++
T Consensus 13 ~g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd------ev~i~ 82 (88)
T TIGR01687 13 TGKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD------VVAIF 82 (88)
T ss_pred hCCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC------EEEEe
Confidence 35433456666 88999999999999875321 11222344777788888765532 4678888 56665
Q ss_pred e
Q 032784 91 V 91 (133)
Q Consensus 91 ~ 91 (133)
-
T Consensus 83 P 83 (88)
T TIGR01687 83 P 83 (88)
T ss_pred C
Confidence 3
No 80
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=88.38 E-value=2.9 Score=27.66 Aligned_cols=55 Identities=9% Similarity=0.005 Sum_probs=39.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe--cCeecCCCCcc
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILENNKTV 70 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy--~Gk~L~D~~tL 70 (133)
.+++.+++| +...+.+.|++||.++=+++-++ .++.++...+.- ..+.|..+...
T Consensus 2 ~~~v~LP~~-q~t~V~vrpg~ti~d~L~~~~~k-------r~L~~~~~~V~~~~~~k~l~~~~d~ 58 (71)
T PF02196_consen 2 TCRVHLPNG-QRTVVQVRPGMTIRDALSKACKK-------RGLNPECCDVRLVGEKKPLDWDQDS 58 (71)
T ss_dssp EEEEEETTT-EEEEEEE-TTSBHHHHHHHHHHT-------TT--CCCEEEEEEEEEEEE-TTSBG
T ss_pred eEEEECCCC-CEEEEEEcCCCCHHHHHHHHHHH-------cCCCHHHEEEEEcCCCccccCCCce
Confidence 468889999 55678999999999999999999 888888776643 34456555433
No 81
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=88.02 E-value=1.2 Score=37.15 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=40.1
Q ss_pred eeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceE----EEecCeecCCCCccccCCCCCCC
Q 032784 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIK----LISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 19 i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qr----LIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
+.....+...||.++++.+..+ + ..+.+..+| +--.|+.|-|+.+|++|+...+.
T Consensus 14 ~~~~~~s~~~ti~d~~~~~~~~---~---~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~ 72 (297)
T KOG1639|consen 14 IKEKDLSGSETIDDLLKAISAK---N---LKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGA 72 (297)
T ss_pred eeeecCCCCCcHHHHHHHHHHh---h---hccCccchhheeeccCCCccccchhHHHHhccCCCC
Confidence 3345666788999999887776 1 345553333 34479999999999999998776
No 82
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=88.02 E-value=1.4 Score=32.75 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=42.2
Q ss_pred EEeCC-cccHHHHHHHHHhcCCCCCc---cCCCCCCceEEEecC-----------------eec---CCCCccccCCCCC
Q 032784 22 FRYSS-ASTVDMLKQRIVSDWPKGKT---IVPKAVTEIKLISSG-----------------KIL---ENNKTVGQCKIPY 77 (133)
Q Consensus 22 ~~v~p-~~TV~~lK~~I~~~wP~~~~---~~gi~~~~qrLIy~G-----------------k~L---~D~~tLsd~~I~~ 77 (133)
-.++. ++||.+|++.+.++-+...+ =.....+.+|+++.. -+| +|+.||.+|||.+
T Consensus 20 ~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~n 99 (122)
T PF10209_consen 20 HNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVEN 99 (122)
T ss_pred ecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCc
Confidence 45776 89999999998887654422 135667788887642 366 7888999999987
Q ss_pred CC
Q 032784 78 GE 79 (133)
Q Consensus 78 g~ 79 (133)
..
T Consensus 100 ET 101 (122)
T PF10209_consen 100 ET 101 (122)
T ss_pred cc
Confidence 65
No 83
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=87.79 E-value=1.8 Score=30.51 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=43.6
Q ss_pred eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEecCCcc
Q 032784 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (133)
Q Consensus 20 ~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~~~~~~ 96 (133)
+...++=...+..||..++.+ .+++-+.-.+.....+|+.+++|.|-+++-. |.+.+.+-+....+
T Consensus 5 I~q~mDI~epl~~Lk~lLe~R-------l~~~L~~~~f~LQD~~L~~~k~L~dQcVqge----GlVQlnvQi~s~~~ 70 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERR-------LGISLSDYEFWLQDIQLEPHKSLVDQCVQGE----GLVQLNVQIKSNQG 70 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHH-------H-S--SS-EEEETTEE--TTSBTTTSS--------SEEEEEEEEE--TT
T ss_pred EEEEEecCCcHHHHHHHHHHh-------hCCCcCCCeEEeccceecCCccHHHhhcccc----CEEEEEEEEEecCC
Confidence 345666677899999999999 8999999999888988999999999999843 35566666665554
No 84
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=87.53 E-value=2.1 Score=28.03 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=35.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~ 60 (133)
+.|+++. |.++..+.++++.|-.+|+++|.+. .+.+.+..+|-|.
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~-------~~~~~~~~~l~Y~ 46 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKR-------FGLDNQSFTLKYQ 46 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHH-------hCCCCCCeEEEEE
Confidence 3455555 4477889999999999999999999 6666677888776
No 85
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=87.00 E-value=5.5 Score=26.22 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=38.2
Q ss_pred CCCeeeeEEeCCc-ccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 15 DGSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 15 ~G~~i~~~~v~p~-~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.|.....++++++ .||.+|.+.+.++.|.-. -....+++..+|+...+ +.-|++|+
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~l~----~~~~~~~v~vn~~~v~~-----~~~l~dgD 69 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPELA----ASRGQVMVAVNEEYVTD-----DALLNEGD 69 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCchhh----hhccceEEEECCEEcCC-----CcCcCCCC
Confidence 4544446788866 899999999999955211 11234567778888875 45677888
No 86
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=86.16 E-value=2.2 Score=31.84 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=45.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC-CceEEEec---C---eecCCCCccccCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEIKLISS---G---KILENNKTVGQCKIP 76 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~-~~qrLIy~---G---k~L~D~~tLsd~~I~ 76 (133)
..+.++|.+.+|.. ..+.+++++||.+|-+.|..+ .|+.. ...-|.+. + ..|+...+|.+....
T Consensus 2 ~~~~~~V~l~dg~~-~~~~~~~~~t~~ev~~~v~~~-------~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 2 KPRVLKVYLLDGTT-LEFEVDSSTTAEELLETVCRK-------LGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred CcEEEEEEecCCCE-EEEEECCCCCHHHHHHHHHHH-------hCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 45789999999965 478999999999999999999 77743 22233321 1 346666666666544
No 87
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=85.84 E-value=2.5 Score=28.90 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=32.7
Q ss_pred EEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC-CceEEEe
Q 032784 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEIKLIS 59 (133)
Q Consensus 10 ~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~-~~qrLIy 59 (133)
+++..-|.++.-+.+.++.+..+|+++|+++ .++.. ....|=|
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r-------~~~~~~~~f~LkY 45 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKR-------FKLDDMSAFDLKY 45 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHH-------hCCCCCCeeEEEE
Confidence 5555555578889999999999999999999 55543 4556644
No 88
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=85.50 E-value=2.8 Score=28.53 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=38.9
Q ss_pred EEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe
Q 032784 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (133)
Q Consensus 10 ~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk 62 (133)
++.+++|.. ..+.+.|++||.++=.++-++ .|+.++...+...|+
T Consensus 3 rV~LPdg~~-T~V~vrpG~ti~d~L~kllek-------Rgl~~~~~~vf~~g~ 47 (73)
T cd01817 3 RVILPDGST-TVVPTRPGESIRDLLSGLCEK-------RGINYAAVDLFLVGG 47 (73)
T ss_pred EEECCCCCe-EEEEecCCCCHHHHHHHHHHH-------cCCChhHEEEEEecC
Confidence 567899954 578999999999999999999 999999998877764
No 89
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=85.00 E-value=2.1 Score=29.07 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=24.4
Q ss_pred EEEEeCCCCeeeeEEeC-CcccHHHHHHHHHhc
Q 032784 9 IKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSD 40 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~-p~~TV~~lK~~I~~~ 40 (133)
|.+|..+.++...+.|+ ...+|.+||..|.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 34566777777778888 467999999999777
No 90
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=84.94 E-value=2.5 Score=27.06 Aligned_cols=58 Identities=14% Similarity=0.221 Sum_probs=43.6
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEe
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~ 91 (133)
.+.+....||.+|.+.+.+++|... ......+..+|+...+ . -.+.-+++|+ .+.++-
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~-----~~~~~~v~vN~~~v~~-~-~~~~~l~~gD------~V~i~p 72 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELA-----LRDRVAVAVNGEIVPD-D-GLDTPLKDGD------EVAILP 72 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGH-----TTTTEEEEETTEEEGG-G-TTTSBEETTE------EEEEEE
T ss_pred EEecCCCCcHHHHHHHHHhhccccc-----cCccEEEEECCEEcCC-c-cCCcCcCCCC------EEEEEC
Confidence 4688889999999999999965321 4577888999999988 2 4455667888 566553
No 91
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=84.93 E-value=3.4 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=32.8
Q ss_pred eeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe
Q 032784 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (133)
Q Consensus 19 i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk 62 (133)
++.+.+.++.+..+|.++|.++ ..+++++.+|-|.-.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~k-------Lkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSK-------LELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH-------hCCCchhcEEEeccC
Confidence 4578999999999999999999 899999999988653
No 92
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=82.81 E-value=3.9 Score=26.66 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=34.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G 61 (133)
+.|+++..++ .+..+.+.++.|..+|+++|++. .+.+....+|-|..
T Consensus 2 ~~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~-------~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGD-IRRIISLPSDVSFDDLRSKIREK-------FGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTE-EEEEEEECSTSHHHHHHHHHHHH-------HTTSTSSEEEEEEE
T ss_pred EEEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHH-------hCCCCccEEEEeeC
Confidence 4455555554 22238899999999999999999 56667888888854
No 93
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=82.29 E-value=3 Score=36.32 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=52.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCC--CccccCCCCCCC
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN--KTVGQCKIPYGE 79 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~--~tLsd~~I~~g~ 79 (133)
+|..-+... +..++.+..+....+++..++.. .++..+..-|||+++.|.++ ++|.+||+..++
T Consensus 4 tvs~~l~~~-~~~~i~v~~dg~L~nl~aL~~~d-------~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 4 TVSVALNFE-KKFPIPVTTDGELNNLAALCWKD-------TGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred EEEEEecce-eeeccccccccchhhHHHHHHHH-------hCcccchhhcccCCCccccchhhhhhhcccccce
Confidence 444444444 44578888889999999999999 99999999999999999655 789999999988
No 94
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=81.43 E-value=13 Score=26.01 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=36.2
Q ss_pred eeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe--c--Ce-ecCCC-CccccCCCCCCC
Q 032784 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--S--GK-ILENN-KTVGQCKIPYGE 79 (133)
Q Consensus 19 i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy--~--Gk-~L~D~-~tLsd~~I~~g~ 79 (133)
...-.|+..+||..|...+.+. ..+ ..+-||=- . +. .|.+. .||+|++|..|.
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rkl-------f~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ 73 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKL-------FNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQ 73 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHH-------CT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTE
T ss_pred HhHhhccccChHHHHHHHHHHH-------hCC-CccceehhccCCcchhhhCCCCccHHHccCcCCC
Confidence 4567899999999999999999 778 77789932 2 22 46454 699999999775
No 95
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=80.64 E-value=9 Score=25.24 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=35.6
Q ss_pred CCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 15 ~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.|.+...++++.+.||.+|.+.+.++.|+-... .....+..+|+...++ .-+++|+
T Consensus 16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~----~~~~~vavN~~~v~~~-----~~l~dgD 71 (82)
T PLN02799 16 TGVSDMTLELPAGSTTADCLAELVAKFPSLEEV----RSCCVLALNEEYTTES-----AALKDGD 71 (82)
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHChhHHHH----hhCcEEEECCEEcCCC-----cCcCCCC
Confidence 454545678888999999999998884421110 0123456678776543 4567788
No 96
>PRK06437 hypothetical protein; Provisional
Probab=80.17 E-value=13 Score=24.04 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=34.0
Q ss_pred eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 20 ~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
..++++...||.+|=+. .+++++..-+..+|+++. .++-+++|+
T Consensus 13 ~~~~i~~~~tv~dLL~~-----------Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 13 KTIEIDHELTVNDIIKD-----------LGLDEEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred eEEEcCCCCcHHHHHHH-----------cCCCCccEEEEECCEECC-----CceEcCCCC
Confidence 35788888898876433 467888999999999997 455667888
No 97
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=79.00 E-value=14 Score=23.99 Aligned_cols=43 Identities=9% Similarity=0.106 Sum_probs=32.0
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+++++..||.+|-+.+ +++.+...+..+|+++.. +.-+++|+
T Consensus 17 ~~~~~~~~tv~~ll~~l-----------~~~~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 17 EIEWRKGMKVADILRAV-----------GFNTESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred EEEcCCCCcHHHHHHHc-----------CCCCccEEEEECCEECCC-----CcCcCCCC
Confidence 56788889999887654 455677888889999854 45567888
No 98
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=78.27 E-value=14 Score=26.21 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=53.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCC-ceEEEecCe--ecCCCCccccCC-----CC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLISSGK--ILENNKTVGQCK-----IP 76 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~-~qrLIy~Gk--~L~D~~tLsd~~-----I~ 76 (133)
..+-|.+...+.++.+.+.+++++|+.+|-+.+..+. .......-+++ +--|=-.|| .|..+..|.+|. +.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~ 94 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLK 94 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHh
Confidence 3566777777666777899999999999999877764 22111122233 566656676 577788888874 44
Q ss_pred CCCCCCceEEEEEEecC
Q 032784 77 YGEVPGGVIIMHVVVQP 93 (133)
Q Consensus 77 ~g~~~~~~~tlhlv~~~ 93 (133)
.|. .+||++..
T Consensus 95 ~~~------~~~L~L~~ 105 (108)
T smart00144 95 NGR------EPHLVLMT 105 (108)
T ss_pred cCC------CceEEEEe
Confidence 455 45666543
No 99
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=77.53 E-value=13 Score=24.24 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=36.1
Q ss_pred eEEEEEEeCCCCe---eeeEEeCCcccHHHHHHHHHhcCCCCCccCCC--CCCceEEE
Q 032784 6 LIDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPK--AVTEIKLI 58 (133)
Q Consensus 6 ~i~l~~rl~~G~~---i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi--~~~~qrLI 58 (133)
.-.|+|...++.. ...+.+++++|+.+|-+.+.++ .++ ++++-.|.
T Consensus 2 ~~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k-------~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 2 SGVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEK-------FGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHH-------TTTSSSGGGEEEE
T ss_pred CeEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHH-------hCCCCCCCCEEEE
Confidence 3467888888851 5679999999999999999999 665 56666774
No 100
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=77.37 E-value=12 Score=25.26 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=48.0
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE-ecCeecCCCCccccCCCCCCCCCCceEEEEEEec
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI-y~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~~ 92 (133)
++|.. ..++..+....-.+.++-.++ ....+.|++.-.|- -+|..|+-++.++|||+.++- +++|.++
T Consensus 3 VNGqP-v~VEANvnaPLh~v~akALe~----sgNvgQP~ENWElkDe~G~vlD~~kKveD~Gftngv------kLFLsLK 71 (76)
T PF10790_consen 3 VNGQP-VQVEANVNAPLHPVRAKALEQ----SGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGV------KLFLSLK 71 (76)
T ss_pred eCCCc-eeeecCCCCcchHHHHHHHhh----ccccCCCcccceeeccCCcEeeccchhhhccccccc------eEEEEee
Confidence 46633 356777777777776665544 11235566665553 478899999999999999887 7888876
Q ss_pred CC
Q 032784 93 PS 94 (133)
Q Consensus 93 ~~ 94 (133)
+-
T Consensus 72 AG 73 (76)
T PF10790_consen 72 AG 73 (76)
T ss_pred cc
Confidence 53
No 101
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=77.11 E-value=0.77 Score=38.96 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHhcC-CCCC--ccCCCCCCceE-----EEecCeecCCCCccccCCCC
Q 032784 27 ASTVDMLKQRIVSDW-PKGK--TIVPKAVTEIK-----LISSGKILENNKTVGQCKIP 76 (133)
Q Consensus 27 ~~TV~~lK~~I~~~w-P~~~--~~~gi~~~~qr-----LIy~Gk~L~D~~tLsd~~I~ 76 (133)
+.||.++|+.++++- +.+. ...+++.+-++ |+|+-|.+.|++||.|..=.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 689999999999921 0000 01789999999 99999999999999887543
No 102
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=72.77 E-value=18 Score=25.27 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=32.9
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~ 60 (133)
+++++.-+.++..+.++++.+-.+|.++|.++ .++. ...+|=|.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdk-------f~~~-~~~~iKyk 46 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDK-------FGFK-RRLKIKMK 46 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHH-------hCCC-CceEEEEE
Confidence 45555533377889999999999999999999 7764 45566443
No 103
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=72.29 E-value=5.5 Score=27.95 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=37.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceE
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIK 56 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qr 56 (133)
+++|++-+.+|..+ .+++.-+++..+|=+.+..+ .+.|.+..+
T Consensus 1 ~V~L~V~Lpdg~~i-~V~v~~s~~a~~Vleav~~k-------l~L~~e~~~ 43 (87)
T cd01777 1 DVELRIALPDKATV-TVRVRKNATTDQVYQALVAK-------AGMDSYTQN 43 (87)
T ss_pred CeEEEEEccCCCEE-EEEEEEcccHHHHHHHHHHH-------hCCCHHHHh
Confidence 47899999999765 68999999999999999999 777777654
No 104
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=72.09 E-value=7.2 Score=30.05 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=40.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCC-cccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p-~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~ 73 (133)
++.|+|++. -| .| -++++. .+.+..+++...+..| ++.+ |+-|+.++...|++||
T Consensus 65 g~~veL~V~--vG-ri-~lele~~~~~ie~I~~iCee~lp-------f~y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 65 GEEVELTVK--VG-RI-ILELEDEEDVIEKIREICEEVLP-------FGYD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred CEEEEEEEE--Ee-EE-EEEecCcHHHHHHHHHHHHHhCC-------CceE----eeeeEEeccCCchhhh
Confidence 345666664 46 44 368887 8889999988888844 3333 3469999999999998
No 105
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=70.68 E-value=12 Score=24.14 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=30.7
Q ss_pred EEEEEeCCCCeeeeEEeC-CcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec
Q 032784 8 DIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~-p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~ 60 (133)
.|+++..++ +..+.+. .+.|..+|+++|.+. .+.+....+|-|.
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~-------~~~~~~~~~l~y~ 46 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEK-------FGLDAVSFKLKYP 46 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHH-------hCCCCCcEEEEee
Confidence 355555544 4467888 899999999999999 5554455666443
No 106
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=69.99 E-value=2.2 Score=36.03 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=39.8
Q ss_pred CCCCeeeeEEeC-CcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCcc
Q 032784 14 YDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTV 70 (133)
Q Consensus 14 ~~G~~i~~~~v~-p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tL 70 (133)
.+| .+..+.+. .+..|..+|+++... .+++++-|++.|.|..|.|+..+
T Consensus 290 ~dg-~~~~~~~~~~~~~~~~~k~k~~~~-------~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADG-QVIKITVQSLSENVASLKEKIADE-------SQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCC-ceeeeccccccccccccccccccc-------cccchhheeeccCCcccCccccc
Confidence 355 34445555 577899999999999 99999999999999999998554
No 107
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=69.85 E-value=8.5 Score=29.56 Aligned_cols=55 Identities=20% Similarity=0.325 Sum_probs=40.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~ 73 (133)
++.|+|++. -| .| -++++..+.+.++++...+..|.+ .+ |.-|+.+++..|++||
T Consensus 64 g~~veL~V~--VG-rI-~le~~~~~~i~~I~eiC~e~~pF~-------y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 64 GEDVELRVQ--VG-RI-ILELEDEDIVEEIEEICKEMLPFG-------YE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred CEEEEEEEE--Ee-EE-EEEecCHHHHHHHHHHHHhhCCCc-------eE----eeeeeEeecCCchhhh
Confidence 345666664 45 44 367778889999999998885532 22 4578899999999998
No 108
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=69.13 E-value=25 Score=23.13 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=35.5
Q ss_pred EEEEeCC--CCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCC--CCceEEE--e----cCeecCCCC
Q 032784 9 IKFRLYD--GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKA--VTEIKLI--S----SGKILENNK 68 (133)
Q Consensus 9 l~~rl~~--G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~--~~~qrLI--y----~Gk~L~D~~ 68 (133)
|++-..+ +....++.|++++|..+|-+.+.++ .++. ++.-.|+ + ..|.|.|++
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k-------~~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKK-------FGLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHH-------hCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 4454545 2255679999999999999999998 5554 5555553 2 335665554
No 109
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=68.62 E-value=20 Score=26.43 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=44.3
Q ss_pred ceEEEEEEeCCCCeee---eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec
Q 032784 5 ELIDIKFRLYDGSDIG---PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~---~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L 64 (133)
..|.|+||-.++.-+. .+.|++++|++-|-..|... .+++++++-.+|-..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~-------Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKF-------LKLQASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHH-------hCCcccCeEEEEEcCcc
Confidence 5789999988774332 47899999999999999999 89999999999977655
No 110
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=67.78 E-value=12 Score=25.75 Aligned_cols=46 Identities=11% Similarity=0.223 Sum_probs=32.7
Q ss_pred EEEEeCCCCeeeeEEeCC--cccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCC
Q 032784 9 IKFRLYDGSDIGPFRYSS--ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN 67 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p--~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~ 67 (133)
|+++..-|.++.-+.+++ +.+-.+|++.|+.. .+++ ...| |-|+|+
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~r-------f~l~--~f~l----KYlDde 48 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVS-------FGLN--DIQI----KYVDEE 48 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHH-------hCCC--ccee----EEEcCC
Confidence 345555444677789999 67999999999999 7777 3333 556544
No 111
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=66.18 E-value=40 Score=29.76 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=50.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE-ecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI-y~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
.|++. .+.....+-+..+..|+++--.|.+.--.+-. ++.....-+|. -.|..|+-++||++.+|.+|+ +
T Consensus 4 RVtV~--~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~-~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~------~ 74 (452)
T TIGR02958 4 RVTVL--AGRRAVDVALPADVPVAELIPDLVDLLDDRGA-AELGAVRWALARAGGSPLDPDASLAEAGVRDGE------L 74 (452)
T ss_pred EEEEe--eCCeeeeeecCCCCcHHHHHHHHHHHhCcccc-cCCCCcceEEecCCCCCCCCCCCHHHcCCCCCC------e
Confidence 44444 44344577788888999988877766211000 01122333442 377899999999999999999 7
Q ss_pred EEEEecCCc
Q 032784 87 MHVVVQPSL 95 (133)
Q Consensus 87 lhlv~~~~~ 95 (133)
+||.-+...
T Consensus 75 L~L~p~~~~ 83 (452)
T TIGR02958 75 LVLVPASAT 83 (452)
T ss_pred EEEeeCCCC
Confidence 888764433
No 112
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=63.96 E-value=23 Score=24.69 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=41.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCc-eEE------EecCeecCCCCccccC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKL------ISSGKILENNKTVGQC 73 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~-qrL------Iy~Gk~L~D~~tLsd~ 73 (133)
+.-|+|..-||+. ..+.|++.+|+.++-+.+.++ ..+..+. =-| ++--|.++|.+.|.++
T Consensus 2 k~vvkv~~~Dg~s-K~l~V~~~~Ta~dV~~~L~~K-------~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 2 KQVVKVYSEDGAS-KSLEVDERMTARDVCQLLVDK-------NHCQDDSSWTLVEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred ceEEEEEecCCCe-eEEEEcCCCcHHHHHHHHHHH-------hCCCCCCCeEEEEecchhhhhhhccchHHHHHH
Confidence 3568888899965 478999999999999999988 3322221 111 2345677777665554
No 113
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=63.21 E-value=35 Score=21.49 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=35.5
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+|+ .++++...||.+|.+++ +++.+...+..+|+++..+. -++.-|.+|+
T Consensus 4 iNg~---~~~~~~~~tv~~ll~~l-----------~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD 54 (65)
T cd00565 4 VNGE---PREVEEGATLAELLEEL-----------GLDPRGVAVALNGEIVPRSE-WASTPLQDGD 54 (65)
T ss_pred ECCe---EEEcCCCCCHHHHHHHc-----------CCCCCcEEEEECCEEcCHHH-cCceecCCCC
Confidence 4562 46888889999887664 45577888899999885431 2234577888
No 114
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=62.05 E-value=11 Score=27.04 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=19.1
Q ss_pred EEEecCeecCCCCccccCCCCCCC
Q 032784 56 KLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 56 rLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.|=|+||.|..+++|++| |..++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE 25 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE 25 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc
Confidence 477999999999999999 54444
No 115
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=60.21 E-value=25 Score=27.63 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=30.4
Q ss_pred eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCC---ceEE--EecCee---cCCCCccccC
Q 032784 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT---EIKL--ISSGKI---LENNKTVGQC 73 (133)
Q Consensus 20 ~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~---~qrL--Iy~Gk~---L~D~~tLsd~ 73 (133)
+.+.++.+.||.+|.+.++.+ .+++.+ .+|| +++||+ +..+.+|++.
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~k-------~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQKK-------VGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHTT-----------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEECCCCCHHHHHHHHHHH-------cCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 467888999999999999999 666554 5666 678875 6778888766
No 116
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=60.00 E-value=23 Score=33.41 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=39.1
Q ss_pred EEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec
Q 032784 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64 (133)
Q Consensus 11 ~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L 64 (133)
|-+.++ .+..+-+++++|+..+++.|... .|++...|-|+|.|...
T Consensus 319 Fs~~~~-~~~~~~~~~~ntl~~~~~~I~~~-------Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 319 FSMVQA-TSHEYYVHADNTLHSLIERISKQ-------TGIPEGKQELLFEGGLS 364 (732)
T ss_pred Eeeccc-eEEEEecChhhhHHHHHHHHHHh-------hCCCCccceeeeecCcc
Confidence 444566 44578899999999999999999 99999999999998754
No 117
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=58.85 E-value=23 Score=27.44 Aligned_cols=54 Identities=22% Similarity=0.289 Sum_probs=40.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcc-cHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSAS-TVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~-TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~ 73 (133)
+.+++++ ..| .| .+++++.+ +++.+++...+..|.+. + ++-|+++.+..|+.||
T Consensus 74 ~~~eL~V--kvG-ri-~~eie~e~~~~e~ie~ic~e~lPf~y-------~----v~vG~F~r~kpTVTDy 128 (165)
T COG4055 74 EEIELKV--KVG-RI-ILEIEDEDETMEKIEEICDEMLPFGY-------E----VRVGKFTRRKPTVTDY 128 (165)
T ss_pred EEEEEEE--Eee-EE-EEEecCcHhHHHHHHHHHHHhCCCce-------e----eeeeeeeccCCcchhh
Confidence 4455555 557 54 36888775 99999998888866432 2 4789999999999998
No 118
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=55.81 E-value=37 Score=23.22 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHhcCCCCCccCCCCCC----ceEEEecCee----cCCCCccccCCCCCCC
Q 032784 27 ASTVDMLKQRIVSDWPKGKTIVPKAVT----EIKLISSGKI----LENNKTVGQCKIPYGE 79 (133)
Q Consensus 27 ~~TV~~lK~~I~~~wP~~~~~~gi~~~----~qrLIy~Gk~----L~D~~tLsd~~I~~g~ 79 (133)
.+|+.+|-++|-... .|+... .-++||..-. -..+++|+++||.+|+
T Consensus 8 ~~TL~~lv~~Vlk~~------Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs 62 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKK------LGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGS 62 (87)
T ss_dssp T-BHHHHHHHCCCCC------S--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-
T ss_pred hCcHHHHHHHHHHhc------cCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCC
Confidence 679999999876641 343332 3344444332 1234799999999998
No 119
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=55.72 E-value=25 Score=22.15 Aligned_cols=29 Identities=34% Similarity=0.235 Sum_probs=23.9
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
|++.+.+|. ..+++.+.|+.++-+.|...
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I~~~ 29 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSIHSS 29 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHHSHH
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHHCHH
Confidence 567779993 35799999999999999876
No 120
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=55.57 E-value=58 Score=23.19 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=27.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
.....|.++.| .+..+.|++++|+.+|-+.+-++
T Consensus 6 ~~~~sf~lp~~-s~k~v~IsS~tTt~eVI~~LL~K 39 (96)
T cd01778 6 RTSTSLPLPKD-TAKHLHISSKTTVREVIEALLKK 39 (96)
T ss_pred eEEEEEeccCC-ceeEEEEecCCcHHHHHHHHHHh
Confidence 34566777777 44578999999999999998888
No 121
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=54.65 E-value=24 Score=24.22 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=30.8
Q ss_pred eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC
Q 032784 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (133)
Q Consensus 20 ~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G 61 (133)
..+.+.++.+..+|.++|+++ .+.+++..+|-|.-
T Consensus 9 Vai~v~~g~~y~~L~~~ls~k-------L~l~~~~~~LSY~~ 43 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQA-------LPQQAQRGQLSYRA 43 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHH-------hcCChhhcEEEecC
Confidence 357889999999999999999 88899999998854
No 122
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=54.44 E-value=52 Score=20.66 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=34.8
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+|+ .++++...||.+|.+.+ +++++...+..+|+++.-++ -.++-+++||
T Consensus 3 iNg~---~~~~~~~~tv~~ll~~l-----------~~~~~~v~v~vN~~iv~~~~-~~~~~L~~gD 53 (64)
T TIGR01683 3 VNGE---PVEVEDGLTLAALLESL-----------GLDPRRVAVAVNGEIVPRSE-WDDTILKEGD 53 (64)
T ss_pred ECCe---EEEcCCCCcHHHHHHHc-----------CCCCCeEEEEECCEEcCHHH-cCceecCCCC
Confidence 4673 45788888999887653 45567778889999884221 2335678888
No 123
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=54.33 E-value=57 Score=21.05 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=31.2
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.++++.+.|..+||.++... ++ -+||+|=+.+++.. +++||
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~-----------~D--I~I~NGF~~~~d~~-----L~e~D 49 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPD-----------AD--IVILNGFPTKEDIE-----LKEGD 49 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCC-----------CC--EEEEcCcccCCccc-----cCCCC
Confidence 46889999999999886655 22 57999988877655 45777
No 124
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=49.92 E-value=15 Score=28.05 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHhcCCCCC--cc-------------CCCCCCceEEEecCee-cCCCCccccCCCCCCCCCCceEEEEEE
Q 032784 27 ASTVDMLKQRIVSDWPKGK--TI-------------VPKAVTEIKLISSGKI-LENNKTVGQCKIPYGEVPGGVIIMHVV 90 (133)
Q Consensus 27 ~~TV~~lK~~I~~~wP~~~--~~-------------~gi~~~~qrLIy~Gk~-L~D~~tLsd~~I~~g~~~~~~~tlhlv 90 (133)
++|..+|-..|.+..|... +. .++-+.++=-...|+- .+|++||.+++++-|+ -+.+.
T Consensus 61 datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD------~lDVa 134 (151)
T KOG3391|consen 61 DATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRYIVREVGTTCLGRKGIDDNKTLQQTKFEIGD------YLDVA 134 (151)
T ss_pred hhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCceeeeecccccCcccCCccchhhhCCccccc------eEEEE
Confidence 4778888888888765431 10 1122222222233554 5899999999999999 47777
Q ss_pred ecCCccch
Q 032784 91 VQPSLAKT 98 (133)
Q Consensus 91 ~~~~~~~~ 98 (133)
+.++.-+.
T Consensus 135 I~~p~~~~ 142 (151)
T KOG3391|consen 135 ITPPNRRP 142 (151)
T ss_pred ecCcccCC
Confidence 76654433
No 125
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=48.98 E-value=70 Score=21.94 Aligned_cols=61 Identities=11% Similarity=0.221 Sum_probs=41.4
Q ss_pred eEEEEEEeCCCCee---eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCee-c-CCCCccccC
Q 032784 6 LIDIKFRLYDGSDI---GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-L-ENNKTVGQC 73 (133)
Q Consensus 6 ~i~l~~rl~~G~~i---~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~-L-~D~~tLsd~ 73 (133)
+|.|+|+-.+.-.. ..+.|+.+.||+++...|..+ ..+++++--.+|-+.. + ..+.++++.
T Consensus 1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~-------L~l~~~~slflyvnn~f~p~~d~~~g~L 66 (87)
T cd01612 1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKR-------LKLKASDSLFLYINNSFAPSPDENVGNL 66 (87)
T ss_pred CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHH-------hCCCccCeEEEEECCccCCCchhHHHHH
Confidence 36677776655211 137799999999999999999 7777776445565554 4 445666654
No 126
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=48.36 E-value=67 Score=21.92 Aligned_cols=41 Identities=7% Similarity=-0.097 Sum_probs=33.3
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL 57 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL 57 (133)
|++.+++. +...+++-|++|+.+.=.+.... .++.++....
T Consensus 2 ir~~LPnq-QrT~V~vrpG~tl~daL~KaLk~-------R~l~pe~C~V 42 (74)
T cd01816 2 IRVFLPNK-QRTVVNVRPGMTLRDALAKALKV-------RGLQPECCAV 42 (74)
T ss_pred eeEECCCC-CeEEEEecCCcCHHHHHHHHHHH-------cCCChhHeEE
Confidence 67778887 55678999999999998888888 8888766544
No 127
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=48.20 E-value=21 Score=30.95 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=49.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC---eec--CCCCccccCCCCCCC
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KIL--ENNKTVGQCKIPYGE 79 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G---k~L--~D~~tLsd~~I~~g~ 79 (133)
.|.+|+++|... -..|-++++|..|-..+..+ ..|.+-...+|+.+- |-| ..+.||.++||.+..
T Consensus 279 ~i~vR~pdG~R~-qrkf~~sepv~ll~~~~~s~------~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~ 348 (356)
T KOG1364|consen 279 SIQVRFPDGRRK-QRKFLKSEPVQLLWSFCYSH------MDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSE 348 (356)
T ss_pred EEEEecCCccHH-HHhhccccHHHHHHHHHHHh------hcccccccceeeecccchhhhhccccchHHHhccCccc
Confidence 489999999654 45778888998888766555 146677888999887 555 456799999998654
No 128
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=47.73 E-value=68 Score=22.12 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=44.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe--ecCCCCccccCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK--ILENNKTVGQCK 74 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk--~L~D~~tLsd~~ 74 (133)
...+.|++...+......+.++.+.|+.+|-+++..++-.+.. .+-+.++--|==.|+ .|..+.+|.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~-~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLL-PPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT--CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcC-CcccccCEEEEecCceEEeeCCeeeeccH
Confidence 4578888888866677789999999999998887666110000 111122566655666 577888888884
No 129
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=47.62 E-value=90 Score=28.15 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=47.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec----Ce--ecCCCCccccCCCCCCC
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS----GK--ILENNKTVGQCKIPYGE 79 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~----Gk--~L~D~~tLsd~~I~~g~ 79 (133)
-++||-..|+.. +++.++++.+.|-++|....- .+.+++++.+--+ |- -+..++|+.|+|+..|.
T Consensus 2 i~rfRsk~G~~R--ve~qe~d~lg~l~~kll~~~~-----~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGq 72 (571)
T COG5100 2 IFRFRSKEGQRR--VEVQESDVLGMLSPKLLAFFE-----VNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQ 72 (571)
T ss_pred eEEEecCCCcee--eeccccchhhhhhHHHHhhhc-----cCCCccceEEEeCCCCCceeeecccccChhhhccccCc
Confidence 378999999654 699999999999998877631 2355555555321 21 14678899999999998
No 130
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=46.84 E-value=24 Score=26.07 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=34.8
Q ss_pred EeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCC
Q 032784 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (133)
Q Consensus 23 ~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~ 74 (133)
-|..+.||+++...|..+ .++++++.=|.-++..+..+.++++.-
T Consensus 46 lVP~d~tV~qF~~iIRkr-------l~l~~~k~flfVnn~lp~~s~~mg~lY 90 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQA-------LGTSAKKVTLAIEGSTPAVTATVGDIA 90 (121)
T ss_pred EcCCCCcHHHHHHHHHHH-------cCCChhHEEEEECCccCCccchHHHHH
Confidence 589999999999999999 889999854434444557777777653
No 131
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=46.77 E-value=21 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=17.4
Q ss_pred eeEEeCCcccHHHHHHHHHhc
Q 032784 20 GPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 20 ~~~~v~p~~TV~~lK~~I~~~ 40 (133)
++++++.++|+.++|+.++++
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 367899999999999998876
No 132
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=46.49 E-value=99 Score=21.58 Aligned_cols=71 Identities=11% Similarity=0.195 Sum_probs=44.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCc--cCCCCCCceEEEecC--eecCCCCccccCCCCCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKT--IVPKAVTEIKLISSG--KILENNKTVGQCKIPYGE 79 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~--~~gi~~~~qrLIy~G--k~L~D~~tLsd~~I~~g~ 79 (133)
.+-|.-+....=-...+-++.++|+.+|-++++.. --+ ...-+-.-+|+-+.| +.+..+.|+++.||..-+
T Consensus 3 ~fPl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~H---sVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e 77 (85)
T PF06234_consen 3 LFPLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHH---SVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPME 77 (85)
T ss_dssp EEEEEEEETT-SBEEEEEEETT-BHHHHHHHHHTT---TTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTE
T ss_pred ccceeEeeccceEEEEEEeCCCCcHHHHHHHHhhh---hcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcce
Confidence 34444444444233357889999999999999876 111 011233467888999 999999999999998655
No 133
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=45.61 E-value=47 Score=23.79 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=24.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
.++|...+| .+..++|....+-.++|+++-.+
T Consensus 2 vi~~I~~dG-~tk~VNV~~c~~a~eI~~rvLKK 33 (105)
T PF14847_consen 2 VIRFILEDG-STKTVNVSGCFNAQEIKRRVLKK 33 (105)
T ss_dssp EEEEEETTT-EEEEEE--S--HHHHHHHHHHHH
T ss_pred EEEEECCCC-cEEEEEECCCCCHHHHHHHHHHH
Confidence 367888889 67789999999999999999998
No 134
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=45.29 E-value=77 Score=21.97 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=29.4
Q ss_pred EeCCCCeeeeEEeC-----CcccHHHHHHHHHhcCCCCCccCCCCC-CceEEEec
Q 032784 12 RLYDGSDIGPFRYS-----SASTVDMLKQRIVSDWPKGKTIVPKAV-TEIKLISS 60 (133)
Q Consensus 12 rl~~G~~i~~~~v~-----p~~TV~~lK~~I~~~wP~~~~~~gi~~-~~qrLIy~ 60 (133)
|+.-|..+.-|.++ ++.+..+|+++|++. ..+++ ....|-|.
T Consensus 4 Kv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~-------f~l~~~~~~~l~Y~ 51 (91)
T cd06398 4 KVKYGGTLRRFTFPVAENQLDLNMDGLREKVEEL-------FSLSPDADLSLTYT 51 (91)
T ss_pred EEEeCCEEEEEEeccccccCCCCHHHHHHHHHHH-------hCCCCCCcEEEEEE
Confidence 33333355556666 478999999999999 77776 56677664
No 135
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.19 E-value=18 Score=32.80 Aligned_cols=51 Identities=24% Similarity=0.216 Sum_probs=44.5
Q ss_pred EEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 22 ~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
++.+-+-|=.++...|+++ .|++-+.+|.|-+||+|.-.+||.+-|++.+.
T Consensus 54 ~k~sL~i~Gselqa~iakk-------lgi~enhvKci~~~Kils~~ktlaeQglk~nq 104 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKK-------LGIKENHVKCIINGKILSCRKTLAEQGLKINQ 104 (568)
T ss_pred hhcccccccHHHHHHHHHH-------cCCchhhhheeeccceeecccchhhhhhhhhh
Confidence 4555566778899999999 99999999999999999999999999998654
No 136
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=40.90 E-value=89 Score=19.44 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+|+ ++++....||.++=+. .+++.+..-+.++|.++.-.. -.+.-+++|+
T Consensus 5 vNG~---~~~~~~~~tl~~lL~~-----------l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD 55 (66)
T PRK05659 5 LNGE---PRELPDGESVAALLAR-----------EGLAGRRVAVEVNGEIVPRSQ-HASTALREGD 55 (66)
T ss_pred ECCe---EEEcCCCCCHHHHHHh-----------cCCCCCeEEEEECCeEeCHHH-cCcccCCCCC
Confidence 4672 4578888888876543 467778888889998775222 2234467887
No 137
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=40.68 E-value=67 Score=22.86 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=32.7
Q ss_pred EEeCCcccHHHHHHHHHhcCCCCCccCCCCCCc-eEEEecCeecCCCCccccC
Q 032784 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISSGKILENNKTVGQC 73 (133)
Q Consensus 22 ~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~-qrLIy~Gk~L~D~~tLsd~ 73 (133)
+-+..+.||+++...|..+ ..+++++ +=|..++..+..+.|+++.
T Consensus 37 fLvp~~~tv~qf~~~ir~r-------l~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKR-------LQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEETTSBHHHHHHHHHHH-------TT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEcCCCchhhHHHHhhhh-------hcCCCCceEEEEEcCcccchhhHHHHH
Confidence 4678999999999999999 7776665 4455555555778888764
No 138
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.30 E-value=57 Score=27.59 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=44.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE--EecCeec-CC--CCccccCCCCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKIL-EN--NKTVGQCKIPYGE 79 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL--Iy~Gk~L-~D--~~tLsd~~I~~g~ 79 (133)
..-.|.||+.+|. +....|.+..|...|+..|... .+...+=..| -|=-+.+ +| .++|..+++-..+
T Consensus 209 s~crlQiRl~DG~-Tl~~tF~a~E~L~~VR~wVd~n-------~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa 280 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQ-TLTQTFNARETLAAVRLWVDLN-------RGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSA 280 (290)
T ss_pred cceEEEEEcCCCC-eeeeecCchhhHHHHHHHHHHh-------ccCCCCCeeeecCCCceecccccccccHHHhccccch
Confidence 4668999999995 4578999999999999999988 4333311111 1222233 22 2588888876554
No 139
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=36.72 E-value=1.2e+02 Score=21.30 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=30.1
Q ss_pred EeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe
Q 032784 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS 59 (133)
Q Consensus 12 rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy 59 (133)
+-.+| +...+.|+.+.|..+|++++.+. .+++.+ +.|=|
T Consensus 18 ~Y~GG-~tr~i~V~r~~s~~el~~kl~~~-------~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGG-ETRIVSVDRSISFKELVSKLSEL-------FGAGVV-VTLKY 56 (97)
T ss_pred EEcCC-ceEEEEEcCCCCHHHHHHHHHHH-------hCCCCc-eEEEE
Confidence 44666 44568999999999999999999 766665 55544
No 140
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=36.49 E-value=36 Score=23.31 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=17.9
Q ss_pred eEEeCCcccHHHHHHHHHhc
Q 032784 21 PFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~ 40 (133)
.+.++.+.|+.++|+.+.++
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eEEccccccHHHHHHHHHHH
Confidence 57889999999999999877
No 141
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.31 E-value=1.7e+02 Score=21.70 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=36.4
Q ss_pred CeeeeEEeCC-cccHHHHHHHHHhcCCCCC---ccCCCCCCceEEEecC----------------e-ecC-CCCccccCC
Q 032784 17 SDIGPFRYSS-ASTVDMLKQRIVSDWPKGK---TIVPKAVTEIKLISSG----------------K-ILE-NNKTVGQCK 74 (133)
Q Consensus 17 ~~i~~~~v~p-~~TV~~lK~~I~~~wP~~~---~~~gi~~~~qrLIy~G----------------k-~L~-D~~tLsd~~ 74 (133)
+++.--.++- +.||.+++..|-+.-|-+. .-...--+.+++++.. + .|+ +++||..||
T Consensus 22 KnvV~Hd~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldhDd~w~L~d~~ktL~~~G 101 (127)
T KOG4147|consen 22 KNVVYHDVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDHDDRWLLKDEDKTLKAAG 101 (127)
T ss_pred cceeEeccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccCCcceeecCccchHHHhc
Confidence 3444455664 7799988877777654431 1122334555554432 2 344 567999999
Q ss_pred CCCCC
Q 032784 75 IPYGE 79 (133)
Q Consensus 75 I~~g~ 79 (133)
|.+..
T Consensus 102 IenET 106 (127)
T KOG4147|consen 102 IENET 106 (127)
T ss_pred cCcch
Confidence 98654
No 142
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=33.73 E-value=1.3e+02 Score=19.68 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=29.6
Q ss_pred EEEEeCC---CCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC--CceEE
Q 032784 9 IKFRLYD---GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV--TEIKL 57 (133)
Q Consensus 9 l~~rl~~---G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~--~~qrL 57 (133)
|+|-..+ + ....+.+.+++|+.+|=+.+.++ .++.. +.-.|
T Consensus 5 lrV~~~~~~~~-~~kti~v~~~tTa~~Vi~~~l~k-------~~l~~~~~~y~L 50 (90)
T smart00314 5 LRVYVDDLPGG-TYKTLRVSSRTTARDVIQQLLEK-------FHLTDDPEEYVL 50 (90)
T ss_pred EEEecccCCCC-cEEEEEECCCCCHHHHHHHHHHH-------hCCCCCcccEEE
Confidence 4444444 5 45679999999999999999988 66553 45555
No 143
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=32.99 E-value=85 Score=21.82 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=26.7
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcC
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~w 41 (133)
|++|..-+.++....++++.|-+.|.+++.+..
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c 33 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMC 33 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHh
Confidence 355665444888889999999999999999993
No 144
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=32.41 E-value=1.3e+02 Score=18.96 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=35.0
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
++|. +.++++..|+.+|=+. .+++....-+.++|.++.-++= +.+ +++||
T Consensus 5 vNG~---~~~~~~~~tl~~ll~~-----------l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD 54 (65)
T PRK05863 5 VNEE---QVEVDEQTTVAALLDS-----------LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGA 54 (65)
T ss_pred ECCE---EEEcCCCCcHHHHHHH-----------cCCCCCcEEEEECCcCcChhHh-hhh-cCCCC
Confidence 4672 4578888888765433 4678889999999998853332 234 88998
No 145
>PF05322 NinE: NINE Protein; InterPro: IPR007986 This family consists of NINE proteins from several bacteriophage and from Escherichia coli.
Probab=31.79 E-value=20 Score=23.47 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=19.5
Q ss_pred hhhhhhhhhhhhhhhCCCCCcchhh
Q 032784 98 TKTALKVDAFWLLVLSLPFGFTLWA 122 (133)
Q Consensus 98 ~~~~k~~~~~~~~~~~~~~~~~~~~ 122 (133)
.+.|+|++--..+++.++|.+.||+
T Consensus 24 s~~k~kpip~~S~vktf~y~~~L~d 48 (60)
T PF05322_consen 24 SRNKKKPIPTESDVKTFNYTAHLWD 48 (60)
T ss_pred cccCCCCCCChhhcccccchhHHHH
Confidence 3334666666788999999999997
No 146
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=30.80 E-value=1.2e+02 Score=20.77 Aligned_cols=40 Identities=13% Similarity=-0.080 Sum_probs=30.9
Q ss_pred EEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE
Q 032784 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL 57 (133)
Q Consensus 10 ~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL 57 (133)
.+.+.+| ....+.+.|++|+.++=+....+ .+..++.--|
T Consensus 3 ~V~lPn~-~~~~v~vrp~~tv~dvLe~aCk~-------~~ldp~eh~L 42 (77)
T cd01818 3 WVCLPDN-QPVLTYLRPGMSVEDFLESACKR-------KQLDPMEHYL 42 (77)
T ss_pred EEECCCC-ceEEEEECCCCCHHHHHHHHHHh-------cCCChhHhee
Confidence 3567888 44568999999999999999988 6666665433
No 147
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=30.07 E-value=87 Score=22.51 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=34.4
Q ss_pred EEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec-CCCCccccC
Q 032784 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQC 73 (133)
Q Consensus 22 ~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L-~D~~tLsd~ 73 (133)
+-|+.++||+++...|..+ ..+++++-=.+|-|..+ .-+.++++.
T Consensus 45 flVp~~~tv~~f~~~irk~-------l~l~~~~slfl~Vn~~~p~~~~~~~~l 90 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKR-------IQLRPEKALFLFVNNSLPPTSATMSQL 90 (112)
T ss_pred EEecCCCCHHHHHHHHHHH-------hCCCccceEEEEECCccCCchhHHHHH
Confidence 5789999999999999999 77777775556655544 666777664
No 148
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=28.89 E-value=1.6e+02 Score=20.47 Aligned_cols=60 Identities=13% Similarity=0.242 Sum_probs=37.3
Q ss_pred eEEEEEEeCCCCeee---eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec--CCCCcccc
Q 032784 6 LIDIKFRLYDGSDIG---PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL--ENNKTVGQ 72 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~---~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L--~D~~tLsd 72 (133)
+|.|+|+-.++..+. .+.++++.|++.|-.-|..+ ..+.+++.-.+|-+... .-|+++++
T Consensus 1 KV~v~fk~iG~aPilk~~k~kI~~~~~f~~vi~fLrk~-------Lk~~~~~slFlYin~sFaPspDe~vg~ 65 (87)
T PF04110_consen 1 KVTVRFKAIGSAPILKQKKFKISASQTFATVIAFLRKK-------LKLKPSDSLFLYINNSFAPSPDETVGD 65 (87)
T ss_dssp EEEEEEEEETT----S--EEEEETTSBTHHHHHHHHHH-------CT----SS-EEEEEEEE---TTSBHHH
T ss_pred CEEEEEEecCCCccccCcEEEECCCCchHHHHHHHHHH-------hCCccCCeEEEEEcCccCCCchhHHHH
Confidence 478888887773322 47899999999999999999 77666666556655533 34555554
No 149
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=28.82 E-value=1.7e+02 Score=19.11 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=28.7
Q ss_pred EEeCC-cccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 22 FRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 22 ~~v~p-~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
+++++ ..||.+|++.+.++.|+- . .-......+.--+++.-.+ +.-|++|+
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~~-~-~~~~~~~~~~aVN~~~~~~-----~~~l~dgD 70 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDRW-A-LALEDGKLLAAVNQTLVSF-----DHPLTDGD 70 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCccH-H-hhhcCCCEEEEECCEEcCC-----CCCCCCCC
Confidence 45543 579999999999985531 1 0012233444445544332 33577888
No 150
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=28.80 E-value=84 Score=21.55 Aligned_cols=40 Identities=18% Similarity=0.104 Sum_probs=32.9
Q ss_pred eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE-EecCeec
Q 032784 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGKIL 64 (133)
Q Consensus 18 ~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL-Iy~Gk~L 64 (133)
+.+.|.|++.+|=.++|+-|+.- .++.+...+- ++.|+.=
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~i-------y~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKI-------YGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHH-------HTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhh-------cCCCeeEEEEeEeCCCce
Confidence 44689999999999999999999 7888877754 6677643
No 151
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=27.99 E-value=1.3e+02 Score=24.24 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=33.1
Q ss_pred eEEEEEEeCCC--CeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE
Q 032784 6 LIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (133)
Q Consensus 6 ~i~l~~rl~~G--~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI 58 (133)
.|.|+|+-... ..-..+.++..+|-.+|-++|+++ -+.+|+.+||.
T Consensus 176 rv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~-------l~~dP~~lr~~ 223 (249)
T PF12436_consen 176 RVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEH-------LNVDPEHLRFF 223 (249)
T ss_dssp EEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHH-------HTS-GGGEEEE
T ss_pred eEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHH-------HCCChHHEEEE
Confidence 46777777422 124578999999999999999999 89999999984
No 152
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=26.26 E-value=1.9e+02 Score=23.26 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCCCceEEEEEEeCCC-------CeeeeEEeCCcccHHHHHHHHHhcC
Q 032784 1 MPDEELIDIKFRLYDG-------SDIGPFRYSSASTVDMLKQRIVSDW 41 (133)
Q Consensus 1 ~~~~~~i~l~~rl~~G-------~~i~~~~v~p~~TV~~lK~~I~~~w 41 (133)
|+++..|.|+++-.++ .+-+.+.+++++||.++=..|.+.+
T Consensus 1 ~~~~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~ 48 (244)
T PRK12385 1 MAEMKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNL 48 (244)
T ss_pred CCCCcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhc
Confidence 6777888888664432 2445677779999999999998873
No 153
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=25.29 E-value=2.5e+02 Score=19.74 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=33.3
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe--cCe--ecCCCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGK--ILENNK 68 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy--~Gk--~L~D~~ 68 (133)
.+|-.-.++-|.|.+|+++|-+.++++. .--.|++-.|.. .|. +|.|+.
T Consensus 10 ~sgct~KTL~V~P~~tt~~vc~lcA~Kf------~V~qPe~y~LFl~vdg~~~qLadd~ 62 (87)
T cd01776 10 NSGCTGKTLLVRPYITTEDVCQLCAEKF------KVTQPEEYSLFLFVEETWQQLAPDT 62 (87)
T ss_pred CCCceeeeeecCCCCcHHHHHHHHHHHh------ccCChhheeEEEEECCcEEEcCccc
Confidence 4665556789999999999999999993 223456666632 332 565553
No 154
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=24.86 E-value=1.1e+02 Score=23.70 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=25.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHH
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQ 35 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~ 35 (133)
.++|+|.|...+|.++ .+...-++||.++-.
T Consensus 41 ~e~i~Itfv~~dG~~~-~i~g~vGdtlLd~ah 71 (159)
T KOG3309|consen 41 VEDIKITFVDPDGEEI-KIKGKVGDTLLDAAH 71 (159)
T ss_pred CceEEEEEECCCCCEE-EeeeecchHHHHHHH
Confidence 4579999999999776 678888999998743
No 155
>PRK01777 hypothetical protein; Validated
Probab=24.30 E-value=2.5e+02 Score=19.52 Aligned_cols=78 Identities=12% Similarity=0.107 Sum_probs=44.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
.|+|.+-+.+......+++.++.||.++=+... +|... ..+..+.-.+.-.||...-+ .-+++||
T Consensus 5 ~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~sg--i~~~~--pei~~~~~~vgI~Gk~v~~d-----~~L~dGD------ 69 (95)
T PRK01777 5 RVEVVYALPERQYLQRLTLQEGATVEEAIRASG--LLELR--TDIDLAKNKVGIYSRPAKLT-----DVLRDGD------ 69 (95)
T ss_pred EEEEEEECCCceEEEEEEcCCCCcHHHHHHHcC--CCccC--cccccccceEEEeCeECCCC-----CcCCCCC------
Confidence 566666666665566789999999998754421 11110 01333334565577766544 4567899
Q ss_pred EEEEEecCCccchh
Q 032784 86 IMHVVVQPSLAKTK 99 (133)
Q Consensus 86 tlhlv~~~~~~~~~ 99 (133)
.+-+. ++....+|
T Consensus 70 RVeIy-rPL~~DPk 82 (95)
T PRK01777 70 RVEIY-RPLLADPK 82 (95)
T ss_pred EEEEe-cCCCCCHH
Confidence 56654 44444443
No 156
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=24.05 E-value=39 Score=33.40 Aligned_cols=52 Identities=4% Similarity=-0.106 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEe
Q 032784 27 ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 27 ~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~ 91 (133)
.-++...|.+|.++ .+|+.-.++|++-|..++++..++.|+.+.+. +.|..+
T Consensus 344 ~~~~~~~~p~~~~q-------tgipi~~~~l~~vg~~~n~d~P~s~~~~e~~~------~~p~~~ 395 (1143)
T KOG4248|consen 344 RPMSHYTTPMVLQQ-------TGIPIQINVLTTVGMTGNGDRPPSTPNAEAPP------PGPGQA 395 (1143)
T ss_pred chhhhccCceeeec-------ccccccccceeeecccccCCCCCCccccccCC------CCCccc
Confidence 33445557788888 99999999999999999999999988888766 566643
No 157
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=23.80 E-value=56 Score=28.14 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=46.5
Q ss_pred EEeCCcccHHHHHHHHHhcCCCCCccCC--CCCCceEEEecCeecCCCCccccCCCCCCCC-CCceEEEEEEec
Q 032784 22 FRYSSASTVDMLKQRIVSDWPKGKTIVP--KAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGVIIMHVVVQ 92 (133)
Q Consensus 22 ~~v~p~~TV~~lK~~I~~~wP~~~~~~g--i~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~-~~~~~tlhlv~~ 92 (133)
+.++...||..||.-+..+ .+ -+..++-++|.+..|.+..||.+.-...+.. -+++..+|--++
T Consensus 168 vrcsa~~Tv~hlkkfl~~k-------~~~~~~~~~idi~~~d~~l~~~~TLk~i~~~~~~~~r~~pL~l~y~v~ 234 (331)
T KOG2660|consen 168 LRCSAAATVNHLKKFLRKK-------MDNLSNKSEIDILCEEELLGDYYTLKDIAYAYRWRSRDPPLPLRYRVK 234 (331)
T ss_pred EeccHHHHHHHHHHHHHHH-------hccccchhhheeecCCccccchhhhhhhhhhhcccccCCcceeEeccc
Confidence 5677889999999999988 55 5677788999999999999999654333322 344545555433
No 158
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=23.50 E-value=2.1e+02 Score=23.55 Aligned_cols=54 Identities=19% Similarity=0.211 Sum_probs=36.3
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCee
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI 63 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~ 63 (133)
++|.|.|-|+..|| ..+++.++=..-|.-+|..|-.+ ++.|.+ .-|-|-|.-+.
T Consensus 24 ~~d~itlef~~~DG-tlit~~~Df~~~v~i~kalilge-----~e~gqs-~yq~~cf~~~~ 77 (240)
T PF14941_consen 24 EEDTITLEFQRSDG-TLITQLADFKQEVQIFKALILGE-----EERGQS-QYQALCFVTKL 77 (240)
T ss_pred CCceEEEEEEcCCC-cEEeeehhhhhHHHHHHHHHcCh-----hhhccC-cceeEEEEEee
Confidence 47899999999999 44466777667788888887655 113433 44555555443
No 159
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=23.35 E-value=1.5e+02 Score=21.68 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=28.4
Q ss_pred CcccHHHHHHHHHhcCCCCC--c----------c---CCCCCCceEEEecCee-cCCCCccccCCCCCCC
Q 032784 26 SASTVDMLKQRIVSDWPKGK--T----------I---VPKAVTEIKLISSGKI-LENNKTVGQCKIPYGE 79 (133)
Q Consensus 26 p~~TV~~lK~~I~~~wP~~~--~----------~---~gi~~~~qrLIy~Gk~-L~D~~tLsd~~I~~g~ 79 (133)
.+.|..+|-..|.+.-|... + + ...-..++--++.|+. -+|++||++++..-|+
T Consensus 45 ~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 45 MDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred ccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCC
Confidence 57788888887777633210 0 0 0111122334555554 3788999999999999
No 160
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=22.15 E-value=1.3e+02 Score=20.48 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=33.4
Q ss_pred EEeCCcccHHHHHHHHHhcCCCCC-ccCCCCCCceEEEecCe-ecC------CCCccccCCCCCCC
Q 032784 22 FRYSSASTVDMLKQRIVSDWPKGK-TIVPKAVTEIKLISSGK-ILE------NNKTVGQCKIPYGE 79 (133)
Q Consensus 22 ~~v~p~~TV~~lK~~I~~~wP~~~-~~~gi~~~~qrLIy~Gk-~L~------D~~tLsd~~I~~g~ 79 (133)
+++++++|..++-+.+.++ |.-. ...++..+.-.|++.+- .|+ =+++|.+. +.+|+
T Consensus 1 i~v~~~~TL~~lid~L~~~-~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ 64 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEK-PEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGE 64 (84)
T ss_dssp EEESTTSBSHHHHHHHHHS-TTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSE
T ss_pred CCcCccchHHHHHHHHHhC-hhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCC
Confidence 5789999999999999998 2110 01123444445555443 121 13677777 77666
No 161
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=21.60 E-value=42 Score=28.26 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=28.3
Q ss_pred EEEEEecCCccchhhhh---hhhh-hhhhhhCCCCCcchhhhHh
Q 032784 86 IMHVVVQPSLAKTKTAL---KVDA-FWLLVLSLPFGFTLWALIS 125 (133)
Q Consensus 86 tlhlv~~~~~~~~~~~k---~~~~-~~~~~~~~~~~~~~~~~~~ 125 (133)
.+|+.+|..++...|+. .+.- ++|.++-++|.+.+|+-|+
T Consensus 204 ~~HI~LR~lrp~g~k~r~ip~~~g~lFnlvscpNYt~Ev~sWi~ 247 (297)
T KOG1639|consen 204 SCHILLRNLRPAGSKKRRIPLPDGFLFNLVSCPNYTYEVGSWIG 247 (297)
T ss_pred eeEeehhhccCCcCccceeecCCccEEEEEecCCcceehHHHHH
Confidence 48999887765443222 2222 5799999999999998764
No 162
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=21.47 E-value=2.7e+02 Score=18.80 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=32.6
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe-cCeecCCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-SGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy-~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+.+++..||+++=|. .|+|..+..+|. +|+.-.= +|.+++|+
T Consensus 26 ~~~~~~~~tvkd~IEs-----------LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd 69 (81)
T PF14451_consen 26 THPFDGGATVKDVIES-----------LGVPHTEVGLILVNGRPVDF-----DYRLKDGD 69 (81)
T ss_pred EEecCCCCcHHHHHHH-----------cCCChHHeEEEEECCEECCC-----cccCCCCC
Confidence 5788899988876433 699999998876 7776542 47788898
Done!