Query 032784
Match_columns 133
No_of_seqs 149 out of 1001
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:15:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 7.3E-29 2.5E-33 182.3 12.5 94 4-99 14-109 (126)
2 1wgh_A Ubiquitin-like 3, HCG-1 99.9 5E-25 1.7E-29 159.6 12.5 92 4-100 14-106 (116)
3 2gow_A HCG-1 protein, ubiquiti 99.9 9.5E-25 3.2E-29 159.8 10.9 92 4-100 15-107 (125)
4 3phx_B Ubiquitin-like protein 99.9 3.6E-21 1.2E-25 127.2 9.6 77 5-95 3-79 (79)
5 4fbj_B NEDD8; effector-HOST ta 99.8 7.9E-21 2.7E-25 129.2 8.9 80 7-100 1-80 (88)
6 2uyz_B Small ubiquitin-related 99.8 5.8E-21 2E-25 126.2 7.6 79 4-96 1-79 (79)
7 1wgd_A Homocysteine-responsive 99.8 9.5E-21 3.2E-25 129.6 8.6 85 3-98 4-91 (93)
8 3dbh_I NEDD8; cell cycle, acti 99.8 1.2E-20 4.1E-25 126.3 8.8 79 4-96 10-88 (88)
9 3plu_A Ubiquitin-like modifier 99.8 1.2E-20 4E-25 132.3 9.1 73 4-90 19-91 (93)
10 1wy8_A NP95-like ring finger p 99.8 4E-20 1.4E-24 124.6 10.8 82 4-98 5-87 (89)
11 4dwf_A HLA-B-associated transc 99.8 2.7E-20 9.3E-25 125.9 9.7 80 4-98 3-82 (90)
12 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 4E-20 1.4E-24 123.9 10.2 81 3-97 4-84 (87)
13 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 2.7E-20 9.1E-25 127.0 9.4 80 7-100 2-81 (96)
14 2faz_A Ubiquitin-like containi 99.8 5.2E-20 1.8E-24 121.1 10.0 76 6-94 2-78 (78)
15 2kan_A Uncharacterized protein 99.8 3.7E-20 1.3E-24 128.0 9.6 80 4-98 13-93 (94)
16 4eew_A Large proline-rich prot 99.8 3.7E-20 1.3E-24 124.7 9.0 75 3-92 14-88 (88)
17 4hcn_B Polyubiquitin, ubiquiti 99.8 2.6E-20 9.1E-25 128.8 8.4 79 4-96 20-98 (98)
18 2hj8_A Interferon-induced 17 k 99.8 2.8E-20 9.7E-25 126.2 8.4 80 5-98 3-82 (88)
19 3v6c_B Ubiquitin; structural g 99.8 5.7E-20 1.9E-24 125.1 9.6 77 4-94 15-91 (91)
20 3n3k_B Ubiquitin; hydrolase, p 99.8 3.7E-20 1.3E-24 122.9 8.3 79 5-97 2-80 (85)
21 3mtn_B UBA80, ubcep1, ubiquiti 99.8 6.2E-20 2.1E-24 121.6 9.3 79 5-97 2-80 (85)
22 1ndd_A NEDD8, protein (ubiquit 99.8 6.9E-20 2.3E-24 118.7 9.1 75 8-96 2-76 (76)
23 1wyw_B Ubiquitin-like protein 99.8 5E-20 1.7E-24 127.6 8.1 78 5-96 20-97 (97)
24 2dzi_A Ubiquitin-like protein 99.8 1.2E-19 4.1E-24 119.5 9.5 78 3-94 4-81 (81)
25 1uh6_A Ubiquitin-like 5; beta- 99.8 5E-20 1.7E-24 130.4 7.5 74 4-91 26-99 (100)
26 2lxa_A Ubiquitin-like protein 99.8 5.8E-20 2E-24 126.4 7.5 75 7-95 2-80 (87)
27 3a9j_A Ubiquitin; protein comp 99.8 1.8E-19 6.3E-24 116.6 9.4 75 8-96 2-76 (76)
28 1wju_A NEDD8 ultimate buster-1 99.8 8.4E-20 2.9E-24 129.2 8.4 75 7-96 16-94 (100)
29 4a20_A Ubiquitin-like protein 99.8 2.8E-19 9.6E-24 125.5 10.0 77 4-94 17-97 (98)
30 3u5c_f 40S ribosomal protein S 99.8 3E-21 1E-25 145.0 -0.2 84 7-104 1-84 (152)
31 2kk8_A Uncharacterized protein 99.8 1.4E-19 4.9E-24 122.8 8.0 75 5-93 9-84 (84)
32 1sif_A Ubiquitin; hydrophobic 99.8 1.8E-19 6.3E-24 122.4 8.4 78 6-97 9-86 (88)
33 1we7_A SF3A1 protein; structur 99.8 3.1E-19 1.1E-23 126.9 9.8 81 5-99 24-114 (115)
34 3vdz_A Ubiquitin-40S ribosomal 99.8 3.4E-19 1.2E-23 126.3 9.5 78 5-96 34-111 (111)
35 1we6_A Splicing factor, putati 99.8 3.6E-19 1.2E-23 125.7 9.4 80 5-98 26-109 (111)
36 3rt3_B Ubiquitin-like protein 99.8 4.2E-19 1.5E-23 130.8 9.9 79 5-97 80-158 (159)
37 3m62_B UV excision repair prot 99.8 2.7E-19 9.3E-24 125.9 8.4 78 7-98 2-79 (106)
38 2daf_A FLJ35834 protein; hypot 99.8 2.4E-19 8.2E-24 130.4 8.2 80 4-96 13-92 (118)
39 1yqb_A Ubiquilin 3; structural 99.8 4.2E-19 1.4E-23 123.9 9.1 79 4-97 20-98 (100)
40 2wyq_A HHR23A, UV excision rep 99.8 1E-18 3.4E-23 116.4 10.4 79 5-94 4-82 (85)
41 1wx8_A Riken cDNA 4931431F19; 99.8 1.9E-19 6.5E-24 123.4 6.9 79 4-97 15-93 (96)
42 2kdb_A Homocysteine-responsive 99.8 2.1E-19 7.2E-24 126.2 7.2 76 4-90 21-99 (99)
43 2bwf_A Ubiquitin-like protein 99.8 1E-18 3.5E-23 114.0 9.8 72 7-93 5-76 (77)
44 2l7r_A Ubiquitin-like protein 99.8 3.6E-19 1.2E-23 122.3 7.2 76 5-96 18-93 (93)
45 1j8c_A Ubiquitin-like protein 99.8 9.5E-19 3.2E-23 127.0 9.8 82 4-100 30-111 (125)
46 2fnj_B Transcription elongatio 99.8 2.6E-19 9E-24 130.1 6.8 75 6-96 2-83 (118)
47 4ajy_B Transcription elongatio 99.8 4.8E-19 1.6E-23 128.8 8.0 77 10-93 4-81 (118)
48 1wia_A Hypothetical ubiquitin- 99.8 1.5E-18 5.2E-23 118.8 10.0 79 2-97 3-82 (95)
49 3l0w_B Monoubiquitinated proli 99.8 9.9E-19 3.4E-23 132.5 9.9 79 8-100 2-80 (169)
50 1yx5_B Ubiquitin; proteasome, 99.8 1.6E-18 5.4E-23 119.3 10.0 77 8-98 2-78 (98)
51 1ttn_A DC-UBP, dendritic cell- 99.8 1.8E-18 6.1E-23 121.4 10.0 78 5-96 22-99 (106)
52 1v5o_A 1700011N24RIK protein; 99.8 9.6E-19 3.3E-23 122.0 8.4 83 4-99 5-91 (102)
53 2kdi_A Ubiquitin, vacuolar pro 99.8 1.9E-18 6.5E-23 123.3 9.5 79 6-98 9-87 (114)
54 2ojr_A Ubiquitin; lanthide-bin 99.8 3.2E-18 1.1E-22 121.0 10.4 78 5-96 34-111 (111)
55 1v2y_A 3300001G02RIK protein; 99.8 4.6E-19 1.6E-23 126.2 5.7 80 3-96 4-99 (105)
56 1uel_A HHR23B, UV excision rep 99.8 3.5E-18 1.2E-22 117.5 9.9 80 8-98 2-81 (95)
57 2klc_A Ubiquilin-1; ubiquitin- 99.8 3.1E-18 1.1E-22 119.6 9.6 77 4-95 23-99 (101)
58 1wx7_A Ubiquilin 3; ubiquitin- 99.8 2.5E-18 8.6E-23 120.3 9.0 80 4-98 15-94 (106)
59 3b1l_X E3 ubiquitin-protein li 99.6 6.4E-20 2.2E-24 119.9 0.0 74 8-95 2-75 (76)
60 3m63_B Ubiquitin domain-contai 99.7 1.2E-18 4E-23 122.0 5.5 75 4-93 26-100 (101)
61 3q3f_A Ribonuclease/ubiquitin 99.7 3.5E-18 1.2E-22 132.5 8.3 79 6-98 105-183 (189)
62 3u30_A Ubiquitin, linear DI-ub 99.7 1.6E-17 5.4E-22 124.4 10.3 80 4-97 18-97 (172)
63 3u30_A Ubiquitin, linear DI-ub 99.7 7.8E-18 2.7E-22 126.0 8.0 77 6-96 96-172 (172)
64 1x1m_A Ubiquitin-like protein 99.7 1.4E-17 4.9E-22 117.1 8.9 78 4-95 10-102 (107)
65 3b08_A Polyubiquitin-C, ubiqui 99.7 2.8E-17 9.5E-22 118.8 10.0 77 6-96 76-152 (152)
66 1wgg_A Ubiquitin carboxyl-term 99.7 1.8E-17 6.2E-22 115.0 8.3 76 3-94 4-80 (96)
67 3u5e_m 60S ribosomal protein L 99.7 4.8E-19 1.6E-23 128.2 0.0 78 8-99 2-79 (128)
68 4dbg_A Ranbp-type and C3HC4-ty 99.7 3.8E-17 1.3E-21 116.5 9.6 74 6-92 24-99 (105)
69 4b6w_A Tubulin-specific chaper 99.7 2.5E-17 8.4E-22 112.8 8.3 75 7-94 3-85 (86)
70 1v5t_A 8430435I17RIK protein; 99.7 2.3E-17 7.8E-22 112.7 7.8 76 3-93 4-83 (90)
71 1wxv_A BAG-family molecular ch 99.7 4.1E-17 1.4E-21 111.0 8.8 78 4-96 5-88 (92)
72 3rt3_B Ubiquitin-like protein 99.7 3.7E-17 1.3E-21 120.4 9.1 77 7-97 3-82 (159)
73 2kd0_A LRR repeats and ubiquit 99.7 5E-17 1.7E-21 110.1 8.7 69 11-93 16-84 (85)
74 2xzm_9 RPS31E; ribosome, trans 99.7 1.5E-18 5E-23 134.9 -0.2 76 8-102 2-77 (189)
75 3b08_A Polyubiquitin-C, ubiqui 99.7 1.6E-16 5.4E-21 114.8 9.3 75 8-96 2-76 (152)
76 1v86_A DNA segment, CHR 7, way 99.7 7.3E-17 2.5E-21 111.4 6.0 75 4-94 15-89 (95)
77 2kjr_A CG11242; UBL, ubiquitin 99.7 3.2E-16 1.1E-20 109.1 9.2 74 4-90 13-93 (95)
78 2dzj_A Synaptic glycoprotein S 99.7 2.7E-16 9.3E-21 107.8 7.7 72 5-89 9-85 (88)
79 2kj6_A Tubulin folding cofacto 99.6 6E-16 2.1E-20 108.3 8.4 76 3-91 11-94 (97)
80 1oqy_A HHR23A, UV excision rep 99.6 4.8E-16 1.6E-20 130.8 8.7 84 4-97 5-88 (368)
81 1v6e_A Cytoskeleton-associated 99.6 1.8E-15 6.2E-20 104.1 9.2 76 4-92 5-87 (95)
82 3ai5_A Yeast enhanced green fl 99.6 1.3E-15 4.4E-20 125.7 9.2 77 4-94 231-307 (307)
83 2io1_B Small ubiquitin-related 99.6 5.6E-15 1.9E-19 102.6 8.4 80 4-97 5-84 (94)
84 1wf9_A NPL4 family protein; be 99.6 4.9E-15 1.7E-19 104.3 7.5 76 3-93 4-95 (107)
85 2dzm_A FAS-associated factor 1 99.6 2.2E-15 7.6E-20 106.1 5.6 73 7-95 10-84 (100)
86 1t0y_A Tubulin folding cofacto 99.6 1.9E-14 6.4E-19 103.6 9.8 75 6-93 6-87 (122)
87 2io0_B Small ubiquitin-related 99.6 2.8E-14 9.7E-19 98.7 9.7 83 1-98 1-83 (91)
88 2d07_B Ubiquitin-like protein 99.5 1.1E-13 3.8E-18 95.6 9.0 79 4-96 15-93 (93)
89 3shq_A UBLCP1; phosphatase, hy 99.5 4.2E-14 1.4E-18 116.7 7.8 77 4-95 3-82 (320)
90 1wz0_A Ubiquitin-like protein 99.5 1.6E-13 5.5E-18 97.1 8.2 80 4-97 22-101 (104)
91 2kzr_A Ubiquitin thioesterase 99.5 8.2E-14 2.8E-18 94.0 5.9 70 8-92 2-77 (86)
92 1wm3_A Ubiquitin-like protein 99.4 4.6E-13 1.6E-17 88.1 8.2 70 7-90 2-71 (72)
93 2eke_C Ubiquitin-like protein 99.4 8.5E-13 2.9E-17 93.9 8.8 78 4-96 29-106 (106)
94 2k8h_A Small ubiquitin protein 99.4 3.8E-13 1.3E-17 96.2 6.9 79 4-96 24-102 (110)
95 3a4r_A Nfatc2-interacting prot 99.4 1.1E-12 3.9E-17 87.9 8.8 73 4-90 5-78 (79)
96 1wjn_A Tubulin-folding protein 99.3 5.3E-11 1.8E-15 81.8 10.1 76 4-93 7-93 (97)
97 3kyd_D Small ubiquitin-related 99.1 9.1E-10 3.1E-14 79.4 9.6 76 5-94 39-114 (115)
98 3pge_A SUMO-modified prolifera 99.0 9.9E-10 3.4E-14 85.8 8.9 82 4-100 27-108 (200)
99 3tix_A Ubiquitin-like protein 98.9 3.5E-09 1.2E-13 83.0 7.8 81 4-99 55-135 (207)
100 3v7o_A Minor nucleoprotein VP3 98.6 3.2E-09 1.1E-13 84.2 0.0 88 4-106 19-106 (227)
101 4efo_A Serine/threonine-protei 98.6 1.5E-07 5E-12 65.7 7.0 56 11-74 18-75 (94)
102 2pjh_A Protein NPL4, nuclear p 98.5 6.2E-08 2.1E-12 65.0 3.2 64 7-79 5-73 (80)
103 2jxx_A Nfatc2-interacting prot 98.4 1.3E-06 4.4E-11 61.0 8.9 69 4-79 23-91 (97)
104 3ix6_A TS, tsase, thymidylate 98.4 3.8E-08 1.3E-12 82.7 0.1 81 4-99 19-99 (360)
105 3uf8_A Ubiquitin-like protein 98.4 1.4E-06 4.9E-11 67.5 8.3 78 4-96 19-96 (209)
106 3goe_A DNA repair protein RAD6 98.3 5E-06 1.7E-10 56.6 9.3 66 6-79 9-75 (82)
107 4da1_A Protein phosphatase 1K, 98.1 4.5E-07 1.5E-11 75.3 0.0 81 4-99 28-108 (389)
108 2l76_A Nfatc2-interacting prot 98.0 4E-05 1.4E-09 53.5 8.5 67 4-79 19-85 (95)
109 3qx1_A FAS-associated factor 1 98.0 5.5E-05 1.9E-09 50.4 8.7 68 3-79 4-76 (84)
110 2kc2_A Talin-1, F1; FERM, adhe 97.7 4.2E-05 1.4E-09 55.9 4.5 64 8-79 13-115 (128)
111 2bps_A YUKD protein; ubiquitin 97.6 0.00014 4.8E-09 49.2 6.6 71 6-79 4-76 (81)
112 2dzk_A UBX domain-containing p 97.6 0.00038 1.3E-08 48.8 8.4 68 4-79 11-83 (109)
113 1wj4_A KIAA0794 protein; UBX d 97.4 0.00071 2.4E-08 48.6 7.5 67 4-79 41-112 (124)
114 1s3s_G P47 protein; AAA ATPase 97.2 0.001 3.6E-08 47.8 7.0 68 4-78 50-120 (127)
115 2cr5_A Reproduction 8; UBX dom 97.2 0.0013 4.6E-08 45.9 7.3 67 4-79 21-91 (109)
116 3h6n_A Plexin-D1; structural g 97.1 0.0048 1.7E-07 45.0 9.8 70 18-93 17-105 (127)
117 3ivf_A Talin-1; FERM domain, c 97.1 0.0029 9.7E-08 51.8 9.6 70 5-79 2-77 (371)
118 4e71_A Plexin-B2, MM1; transme 96.7 0.011 3.9E-07 42.0 8.7 80 6-91 11-109 (111)
119 2al3_A TUG long isoform; TUG U 96.7 0.0068 2.3E-07 41.7 7.3 71 8-92 11-81 (90)
120 2r2o_A Plexin-B1; effector dom 96.3 0.024 8.3E-07 41.8 8.5 81 6-92 24-128 (138)
121 4a3p_A Ubiquitin carboxyl-term 95.7 0.066 2.3E-06 41.2 8.9 65 8-79 129-201 (217)
122 3hm6_X Plexin-B1; structural g 95.6 0.039 1.3E-06 49.4 8.3 114 6-127 257-399 (644)
123 4e74_A Plexin-A4; RBD, structu 95.5 0.054 1.9E-06 38.8 7.3 81 6-92 13-114 (117)
124 3ig3_A Plxna3 protein; plexin 95.2 0.073 2.5E-06 47.5 8.6 82 6-93 233-335 (627)
125 3jyu_A Ubiquitin carboxyl-term 94.7 0.31 1.1E-05 37.7 10.0 54 19-79 153-213 (231)
126 3kuz_A Plexin-C1; structural g 92.7 0.53 1.8E-05 34.1 7.5 67 18-90 39-124 (126)
127 2daj_A KIAA0977 protein, COBL- 90.3 0.73 2.5E-05 31.6 5.7 66 4-77 8-76 (91)
128 2juo_A GA-binding protein alph 89.6 1.4 4.6E-05 30.1 6.6 65 21-96 6-70 (89)
129 4eut_A Serine/threonine-protei 89.3 3 0.0001 33.2 9.7 54 14-74 318-373 (396)
130 1wgr_A Growth factor receptor- 87.6 1.6 5.6E-05 30.1 6.1 62 4-73 7-75 (100)
131 2v1y_A Phosphatidylinositol-4, 86.5 1.1 3.9E-05 31.4 4.9 70 4-76 17-95 (108)
132 1oey_A P67-PHOX, neutrophil cy 86.2 1.9 6.4E-05 28.9 5.6 47 6-62 5-51 (83)
133 2c7h_A RBBP6, retinoblastoma-b 85.8 1.7 5.7E-05 29.5 5.2 57 4-74 6-63 (86)
134 2l32_A Small archaeal modifier 85.3 3.4 0.00012 26.5 6.4 49 8-68 2-50 (74)
135 2kvr_A Ubiquitin carboxyl-term 84.7 0.63 2.1E-05 33.3 2.8 33 21-60 59-91 (130)
136 3qa8_A MGC80376 protein; kinas 79.7 3 0.0001 37.1 5.9 52 18-76 322-374 (676)
137 1ef1_A Moesin; membrane, FERM 79.6 17 0.00057 27.9 9.6 77 7-96 2-84 (294)
138 2y3a_A Phosphatidylinositol-4, 79.2 8.4 0.00029 36.4 8.9 81 3-93 48-137 (1092)
139 3ivf_A Talin-1; FERM domain, c 79.0 14 0.00047 29.7 9.2 74 6-93 85-168 (371)
140 3po0_A Small archaeal modifier 78.2 11 0.00037 24.1 7.0 64 16-90 16-83 (89)
141 1vjk_A Molybdopterin convertin 78.1 12 0.00041 24.6 7.4 55 20-79 29-87 (98)
142 1h4r_A Merlin; FERM, neurofibr 77.6 15 0.00051 28.7 8.9 79 5-96 21-104 (314)
143 1fm0_D Molybdopterin convertin 75.7 11 0.00037 23.5 6.3 53 25-90 23-75 (81)
144 1vd2_A Protein kinase C, IOTA 75.3 13 0.00046 24.9 6.9 46 6-60 6-52 (89)
145 3rpf_C Molybdopterin convertin 72.0 15 0.00051 22.8 8.6 55 21-91 15-69 (74)
146 2q5w_D Molybdopterin convertin 71.5 9.3 0.00032 23.6 5.1 48 21-79 19-66 (77)
147 2i1j_A Moesin; FERM, coiled-co 71.2 24 0.00081 30.7 9.2 80 5-97 3-88 (575)
148 3ge3_C Toluene-4-monooxygenase 70.2 22 0.00074 23.9 9.6 71 6-79 3-76 (84)
149 2ylm_A Ubiquitin carboxyl-term 67.0 3.3 0.00011 35.7 2.9 31 21-58 39-69 (530)
150 1ip9_A BEM1 protein; ubiquitin 67.0 13 0.00044 25.0 5.2 32 9-40 13-44 (85)
151 3qij_A Protein 4.1; cytoskelet 65.7 6.5 0.00022 30.9 4.2 78 4-95 15-98 (296)
152 3hk0_A Growth factor receptor- 65.5 16 0.00055 28.7 6.4 35 5-40 7-41 (256)
153 1c1y_B Proto-onkogene serine/t 63.4 16 0.00056 24.1 5.1 43 8-58 3-45 (77)
154 1y8x_B Ubiquitin-activating en 62.5 25 0.00085 23.9 6.2 64 19-90 6-82 (98)
155 1wgk_A Riken cDNA 2900073H19 p 60.5 38 0.0013 23.2 9.3 81 6-96 11-108 (114)
156 4gmv_A RAS-associated and plec 60.3 23 0.00079 28.2 6.5 62 4-73 29-97 (281)
157 2hj1_A Hypothetical protein; s 59.5 37 0.0013 22.8 7.6 76 6-99 14-91 (97)
158 4gdk_A Ubiquitin-like protein 59.2 25 0.00086 23.4 5.6 63 4-73 3-70 (91)
159 1ryj_A Unknown; beta/alpha pro 58.2 30 0.001 21.3 9.3 43 21-79 17-59 (70)
160 3hhm_A Phosphatidylinositol-4, 57.2 11 0.00036 35.8 4.5 80 4-93 39-128 (1091)
161 3au4_A Myosin-X; protein-prote 54.7 20 0.00069 30.4 5.6 47 5-59 215-263 (555)
162 2l05_A Serine/threonine-protei 54.7 48 0.0016 22.6 7.6 59 5-71 16-78 (95)
163 2kmm_A Guanosine-3',5'-BIS(dip 52.8 20 0.00068 21.7 4.0 29 8-39 2-30 (73)
164 3onh_A Ubiquitin-activating en 52.6 13 0.00045 26.7 3.5 56 21-80 9-73 (127)
165 1wz3_A Autophagy 12B, ATG12B, 52.1 25 0.00087 23.7 4.7 60 4-73 11-75 (96)
166 2qjl_A URM1, ubiquitin-related 50.9 49 0.0017 21.6 7.0 28 16-43 18-47 (99)
167 1rws_A Hypothetical protein PF 48.8 12 0.00043 23.5 2.6 43 21-79 24-66 (77)
168 1tyg_B YJBS; alpha beta barrel 48.4 55 0.0019 21.4 6.8 51 14-79 25-76 (87)
169 3w1s_C Ubiquitin-like protein 46.9 61 0.0021 21.6 6.0 61 4-73 6-70 (91)
170 3ny5_A Serine/threonine-protei 46.4 67 0.0023 21.9 6.4 46 5-58 12-57 (96)
171 1wgy_A RAP guanine nucleotide 44.8 27 0.00093 24.1 4.0 58 3-68 6-68 (104)
172 3pvl_A Myosin VIIA isoform 1; 42.7 37 0.0013 30.0 5.5 35 5-40 262-296 (655)
173 3tca_A Amyloid beta A4 precurs 41.7 53 0.0018 24.6 5.7 34 6-40 34-67 (291)
174 2r2q_A Gamma-aminobutyric acid 40.5 65 0.0022 21.9 5.4 62 5-73 26-93 (110)
175 2inc_C TOUB protein; DIIRON, 4 39.1 84 0.0029 20.9 11.1 58 21-79 16-75 (83)
176 1rrb_A RAF-1 RBD, RAF proto-on 38.5 66 0.0023 22.4 5.2 42 8-57 20-61 (107)
177 2g1e_A Hypothetical protein TA 38.1 72 0.0024 19.8 7.5 62 21-90 18-84 (90)
178 1f0z_A THis protein; ubiquitin 37.9 65 0.0022 19.3 4.7 51 14-79 5-55 (66)
179 2kl0_A Putative thiamin biosyn 37.2 75 0.0026 19.8 5.6 50 14-79 5-54 (73)
180 1wxm_A A-RAF proto-oncogene se 35.6 98 0.0034 20.7 8.5 43 8-58 9-51 (86)
181 4eku_A Protein-tyrosine kinase 35.4 96 0.0033 25.5 6.6 61 5-73 20-97 (392)
182 4a6q_A Histone deacetylase com 33.3 43 0.0015 24.4 3.7 63 26-94 62-140 (143)
183 1eo6_A GATE-16, golgi-associat 32.1 78 0.0027 21.7 4.8 62 5-73 27-94 (117)
184 3eud_A Protein SHQ1; CS domain 32.1 42 0.0014 23.6 3.4 64 4-90 26-93 (115)
185 2cu3_A Unknown function protei 31.6 84 0.0029 18.7 5.9 51 13-79 3-53 (64)
186 2dhz_A RAP guanine nucleotide 31.2 1E+02 0.0036 21.7 5.3 36 4-40 7-42 (120)
187 2k5p_A THis protein, thiamine- 30.6 56 0.0019 20.8 3.6 52 14-79 5-58 (78)
188 2zjd_A Microtubule-associated 30.4 1.2E+02 0.0042 21.3 5.7 62 5-73 34-103 (130)
189 3u52_E Phenol hydroxylase comp 30.4 1.4E+02 0.0049 21.0 6.7 59 21-79 41-102 (119)
190 1q1o_A Cell division control p 30.0 69 0.0023 21.8 4.1 23 18-40 23-45 (98)
191 3dwg_C 9.5 kDa culture filtrat 28.5 1.1E+02 0.0039 19.2 6.2 64 21-92 20-89 (93)
192 2al6_A Focal adhesion kinase 1 27.6 40 0.0014 27.2 3.0 57 9-72 10-76 (375)
193 3hvz_A Uncharacterized protein 24.9 1.1E+02 0.0036 19.6 4.1 55 8-79 7-61 (78)
194 1pqs_A Cell division control p 23.9 53 0.0018 21.2 2.5 23 18-40 2-24 (77)
195 2wlb_A ETP1-FD, electron trans 23.1 1.3E+02 0.0043 19.3 4.4 30 5-35 2-31 (103)
196 3r8s_T 50S ribosomal protein L 22.7 1.7E+02 0.0059 19.4 5.3 39 18-63 28-67 (93)
197 3m95_A Autophagy related prote 22.5 84 0.0029 22.1 3.5 45 22-73 57-102 (125)
198 2ylm_A Ubiquitin carboxyl-term 22.4 49 0.0017 28.4 2.7 52 21-79 150-210 (530)
199 4dxa_B KREV interaction trappe 22.0 51 0.0017 25.8 2.5 30 5-35 4-35 (322)
200 3rui_B Autophagy-related prote 21.9 1.2E+02 0.0039 21.1 4.1 45 22-73 51-96 (118)
201 2nvu_B Maltose binding protein 21.3 2.7E+02 0.0092 24.4 7.3 54 21-79 715-784 (805)
202 2k9x_A Tburm1, uncharacterized 20.2 2.1E+02 0.0071 19.3 7.2 76 1-79 1-91 (110)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.96 E-value=7.3e-29 Score=182.33 Aligned_cols=94 Identities=44% Similarity=0.783 Sum_probs=87.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC--CceEEEecCeecCCCCccccCCCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV--TEIKLISSGKILENNKTVGQCKIPYGEVP 81 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~--~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~ 81 (133)
+|.++|+||+++|+++.+++++|++||++||++|+++||++++ ++|+ ++|||||+||+|+|++||++|+|++++||
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dke--giP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~ 91 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKE--NGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA 91 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCS--SSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccc--cCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence 6899999999999998789999999999999999999999984 5554 89999999999999999999999999999
Q ss_pred CceEEEEEEecCCccchh
Q 032784 82 GGVIIMHVVVQPSLAKTK 99 (133)
Q Consensus 82 ~~~~tlhlv~~~~~~~~~ 99 (133)
++++||||++++++++++
T Consensus 92 ~~v~tmhlVlrl~g~~kk 109 (126)
T 1se9_A 92 GAVTTMHVIIQAPVTEKE 109 (126)
T ss_dssp TCCEEEEEEECCCSSCCC
T ss_pred CCcEEEEEEeccCCcccc
Confidence 999999999999998775
No 2
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.93 E-value=5e-25 Score=159.55 Aligned_cols=92 Identities=23% Similarity=0.535 Sum_probs=81.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCC-ccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK-TIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~-~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
.+.+.|+||+.+| +.++++|++++||++||++|+++||++| +..++++++|||||+||+|+|++||++|+|+.++
T Consensus 14 ~~~m~I~vKtl~G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~--- 89 (116)
T 1wgh_A 14 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--- 89 (116)
T ss_dssp SSSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSC---
T ss_pred CCeEEEEEEeCCC-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence 6789999999999 5568999999999999999999999995 3234689999999999999999999999998887
Q ss_pred ceEEEEEEecCCccchhh
Q 032784 83 GVIIMHVVVQPSLAKTKT 100 (133)
Q Consensus 83 ~~~tlhlv~~~~~~~~~~ 100 (133)
.+||||++|+.++.++.
T Consensus 90 -~~tlhLvlr~~~~~~~~ 106 (116)
T 1wgh_A 90 -TTVMHLVARETLPEPNS 106 (116)
T ss_dssp -EEEEEEEECSSCSSSCC
T ss_pred -ceEEEEEccCCCCCCCc
Confidence 46899999999887653
No 3
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.92 E-value=9.5e-25 Score=159.79 Aligned_cols=92 Identities=23% Similarity=0.535 Sum_probs=81.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCC-ccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK-TIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~-~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
.+.+.|+||+.+| +..+++|+|++||++||++|++.||.+| +..+.++++|||||+||+|+|++||++|+|++++
T Consensus 15 ~~~m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~--- 90 (125)
T 2gow_A 15 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK--- 90 (125)
T ss_dssp TTCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS---
T ss_pred CCeEEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC---
Confidence 5679999999999 5668999999999999999999999994 3223469999999999999999999999999888
Q ss_pred ceEEEEEEecCCccchhh
Q 032784 83 GVIIMHVVVQPSLAKTKT 100 (133)
Q Consensus 83 ~~~tlhlv~~~~~~~~~~ 100 (133)
.+||||++|++++++++
T Consensus 91 -~~tlhlv~r~~~~~~~~ 107 (125)
T 2gow_A 91 -TTVMHLVARETLPEPNS 107 (125)
T ss_dssp -EEEEEEEECSCCSSSSS
T ss_pred -ceEEEEEecCCCCcccc
Confidence 56899999999887764
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.85 E-value=3.6e-21 Score=127.19 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=71.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
..+.|.++..+|+. ..+++++++||.+||++|++. .|+|+++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 3 ~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~----- 69 (79)
T 3phx_B 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSGL-------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 69 (79)
T ss_dssp CCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred CCEEEEEEeCCCCE-EEEEECCcChHHHHHHHHHhh-------cCCCHHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 45788999999955 478999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCc
Q 032784 85 IIMHVVVQPSL 95 (133)
Q Consensus 85 ~tlhlv~~~~~ 95 (133)
|+|+++|.+|
T Consensus 70 -~l~l~~rl~G 79 (79)
T 3phx_B 70 -TVFMNLRLRG 79 (79)
T ss_dssp -EEEEEECCBC
T ss_pred -EEEEEEecCC
Confidence 8999999875
No 5
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.84 E-value=7.9e-21 Score=129.16 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=69.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|.|++.+|+.+ .+++++++||.+||++|++. .++|+++|||+|+|+.|+|+.||++|+|.+|+ +
T Consensus 1 M~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~------~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-------EGIPPQQQRLIYSGKQMNDEKTAADYKILGGS------V 66 (88)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHH-------HCCCGGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred CEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHH-------HCcChhHEEEEECCeECCCCCcHHHcCCCCCC------E
Confidence 3688899999654 78999999999999999999 99999999999999999999999999999999 8
Q ss_pred EEEEecCCccchhh
Q 032784 87 MHVVVQPSLAKTKT 100 (133)
Q Consensus 87 lhlv~~~~~~~~~~ 100 (133)
+||+++++||+.-+
T Consensus 67 l~l~~rl~Gg~~~~ 80 (88)
T 4fbj_B 67 LHLVLALRGGGGLR 80 (88)
T ss_dssp EEEECBCC------
T ss_pred EEEEEECCCCCCCC
Confidence 99999999987765
No 6
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.84 E-value=5.8e-21 Score=126.18 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=73.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
++.+.|+++..+|+.+ .+++++++||.+||++|+++ .|+++++|||+|+|+.|+|++||++|+|.+++
T Consensus 1 m~~m~i~vk~~~g~~~-~~~v~~~~tv~~lk~~i~~~-------~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~---- 68 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQR-------QGVPMNSLRFLFEGQRIADNHTPKELGMEEED---- 68 (79)
T ss_dssp CCEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTCCHHHHTCCTTE----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-------HCCCcccEEEEECCEEeCCCCCHHHcCCCCCC----
Confidence 4678999999999654 78999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
++|++++.+||
T Consensus 69 --~i~l~~~~~GG 79 (79)
T 2uyz_B 69 --VIEVYQEQTGG 79 (79)
T ss_dssp --EEEEEECCCC-
T ss_pred --EEEEEEeccCC
Confidence 89999998875
No 7
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=9.5e-21 Score=129.59 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCceEEEEEEeCCCCe-eeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccC--CCCCCC
Q 032784 3 DEELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGE 79 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~-i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~--~I~~g~ 79 (133)
++..+.|+|+..+|.. .+.+++++++||.+||++|++..| .++++++|||||+||+|+|+.||++| +|.+++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~-----~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~ 78 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYP-----ERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRH 78 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHST-----TCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSE
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhc-----CCCChHHeEEEECCEECcCcCCHHHHhcCCCCCC
Confidence 3667999999999852 235667799999999999999932 28999999999999999999999999 999988
Q ss_pred CCCceEEEEEEecCCccch
Q 032784 80 VPGGVIIMHVVVQPSLAKT 98 (133)
Q Consensus 80 ~~~~~~tlhlv~~~~~~~~ 98 (133)
+|||+++++++++
T Consensus 79 ------~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 79 ------VLHLVCNVKSGPS 91 (93)
T ss_dssp ------EEEEECCCCCCCC
T ss_pred ------EEEEEeCCCCCCC
Confidence 8999999998754
No 8
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.83 E-value=1.2e-20 Score=126.28 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=74.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+..+.|.++..+|.. +.+++++++||.+||++|++. .++|+++|||+|+|+.|+|+.||++|+|.+++
T Consensus 10 ~~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~---- 77 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKE-IEIDIEPTDKVERIKERVEEK-------EGIPPQQQRLIYSGKQMNDEKTAADYKILGGS---- 77 (88)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGCCEEETTEECCTTSBGGGGTCCTTC----
T ss_pred CCcEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHHH-------HCcCHHHEEEEECCeECCCCCcHHHcCCCCCC----
Confidence 567999999999955 479999999999999999999 89999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
++||+++.+||
T Consensus 78 --~i~l~~rl~GG 88 (88)
T 3dbh_I 78 --VLHLVLRLRGG 88 (88)
T ss_dssp --EEEECCCCCCC
T ss_pred --EEEEEEeCCCC
Confidence 89999999875
No 9
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.83 E-value=1.2e-20 Score=132.29 Aligned_cols=73 Identities=11% Similarity=0.211 Sum_probs=68.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|+|.++...|+++ .++++|++||.+||++|+++ +|+|+++|||||+||+|+|+.||++|+|++|+
T Consensus 19 ~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I~~k-------~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgs---- 86 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVLSLQ-------IGTQPNKIVLQKGGSVLKDHISLEDYEVHDQT---- 86 (93)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTSBTGGGTCCTTC----
T ss_pred CceEEEEEECCCCCEE-EEEECCcCHHHHHHHHHHHH-------hCCCHHHEEEEeCCEEccCcCCHHHcCCCCCC----
Confidence 6789999999999765 79999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEE
Q 032784 84 VIIMHVV 90 (133)
Q Consensus 84 ~~tlhlv 90 (133)
|+||.
T Consensus 87 --tLhL~ 91 (93)
T 3plu_A 87 --NLELY 91 (93)
T ss_dssp --EEEEE
T ss_pred --EEEEE
Confidence 89985
No 10
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=4e-20 Score=124.61 Aligned_cols=82 Identities=23% Similarity=0.303 Sum_probs=75.1
Q ss_pred CceEEEEEEeCCCCeeeeE-EeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~-~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
...+.|+|++.+|.+.+.+ ++++++||.+||++|++. .++++++|||+|+|+.|+|+.||++|+|.+++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~-------~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~--- 74 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWAL-------FDVRPECQRLFYRGKQLENGYTLFDYDVGLND--- 74 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHH-------SCCCTTTEEEEETTEECCSSSBHHHHTCCTTC---
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHH-------HCcChhhEEEEECCeECCCCCCHHHCCCCCCC---
Confidence 5679999999999434578 599999999999999999 99999999999999999999999999999999
Q ss_pred ceEEEEEEecCCccch
Q 032784 83 GVIIMHVVVQPSLAKT 98 (133)
Q Consensus 83 ~~~tlhlv~~~~~~~~ 98 (133)
++||+++++++.+
T Consensus 75 ---~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 75 ---IIQLLVRPDSGPS 87 (89)
T ss_dssp ---EEEEEECCCCSSC
T ss_pred ---EEEEEEeCCCCCC
Confidence 8999999998754
No 11
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.83 E-value=2.7e-20 Score=125.85 Aligned_cols=80 Identities=18% Similarity=0.379 Sum_probs=71.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.+.|+|+..+|+. +.++|++++||.+||++|+++ .++++++|||||+||.|+|+.||++|+| +|+
T Consensus 3 ~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~---- 69 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAAS-------VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGK---- 69 (90)
T ss_dssp CCEEEEEEEETTCCE-EEEEEETTCBHHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTSBGGGGTC-TTE----
T ss_pred CcEEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHHH-------hCCCHHHEEEEECCeECCCCCCHHHcCC-CCc----
Confidence 567899999999955 478999999999999999999 8999999999999999999999999999 788
Q ss_pred eEEEEEEecCCccch
Q 032784 84 VIIMHVVVQPSLAKT 98 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~ 98 (133)
|+||+++++++..
T Consensus 70 --~i~l~~~~~~~~~ 82 (90)
T 4dwf_A 70 --VIHLVERAPPQTH 82 (90)
T ss_dssp --EEEEEECCCC---
T ss_pred --EEEEEecCCCCCC
Confidence 8999999877554
No 12
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=4e-20 Score=123.93 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=75.0
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
++..+.|+++..+|+ .+.+++++++||.+||++|++. .++++++|||+|+|+.|+|++||++|+|.+++
T Consensus 4 ~~~~m~i~Vk~~~g~-~~~~~v~~~~tV~~lK~~i~~~-------~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~--- 72 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGG-SYAYAINPNSFILGLKQQIEDQ-------QGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSD--- 72 (87)
T ss_dssp CSSSEEEEEEETTTE-EEEEEECSSSBHHHHHHHHHHH-------TCCCTTTEEEEETTEECCSSSBHHHHTCCTTE---
T ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCChHHHHHHHHHHH-------hCCChHHEEEEECCEEccCCCCHHHCCCCCCC---
Confidence 367899999999994 4579999999999999999999 99999999999999999999999999999998
Q ss_pred ceEEEEEEecCCccc
Q 032784 83 GVIIMHVVVQPSLAK 97 (133)
Q Consensus 83 ~~~tlhlv~~~~~~~ 97 (133)
++|+++++++|+
T Consensus 73 ---~i~l~~~~~GG~ 84 (87)
T 1wh3_A 73 ---TLILSKKKGSGP 84 (87)
T ss_dssp ---EEEEEECSCCCS
T ss_pred ---EEEEEEeccCCC
Confidence 899999999874
No 13
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.83 E-value=2.7e-20 Score=127.04 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=70.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|+|+..+|.. +.+++++++||.+||++|++. .++++++|||+|+|+.|+|+.||++|+|.+++ +
T Consensus 2 m~i~vk~~~g~~-~~~~v~~~~TV~~LK~~i~~~-------~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~------~ 67 (96)
T 3k9o_B 2 MQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------T 67 (96)
T ss_dssp CEEEEEETTCCE-EEEECCTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred cEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHhh-------hCCChhHEEEEECCEECCCCCcHHHcCCCCCC------E
Confidence 578899999955 478999999999999999999 99999999999999999999999999999999 8
Q ss_pred EEEEecCCccchhh
Q 032784 87 MHVVVQPSLAKTKT 100 (133)
Q Consensus 87 lhlv~~~~~~~~~~ 100 (133)
+||+++.+++.+.+
T Consensus 68 i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 68 LHLVLRLRGYADLR 81 (96)
T ss_dssp EEEEECCCC-----
T ss_pred EEEEEEcCCCCccc
Confidence 99999999987765
No 14
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=5.2e-20 Score=121.08 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=70.2
Q ss_pred eEEEEEEeCCCCeeeeEE-eCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 6 LIDIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~-v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
.+.|.++..+|+.+..++ +++++||++||++|++. .|+++++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~-------~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~----- 69 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL-------FHVEPGLQRLFYRGKQMEDGHTLFDYEVRLND----- 69 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTCBTTTTTCCTTC-----
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHH-------HCcChhhEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence 467899999997655788 99999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCC
Q 032784 85 IIMHVVVQPS 94 (133)
Q Consensus 85 ~tlhlv~~~~ 94 (133)
++|+++|++
T Consensus 70 -~i~l~~r~~ 78 (78)
T 2faz_A 70 -TIQLLVRQS 78 (78)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEEeCC
Confidence 899999864
No 15
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=3.7e-20 Score=128.00 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=74.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCC-CccccCCCCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPG 82 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~-~tLsd~~I~~g~~~~ 82 (133)
...+.|.|+..+| . +.++|++++||++||++|++. .|+|+++|||+|+||+|+|+ .||++|+|.+++
T Consensus 13 ~~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gs--- 80 (94)
T 2kan_A 13 VRKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHIV-------ENTPIKRMQLYYSGIELADDYRNLNEYGITEFS--- 80 (94)
T ss_dssp SCCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHHH-------SSSCTTTEEEEETTEEECCTTSBHHHHTCCTTE---
T ss_pred CCCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHHH-------HCcCHHHEEEEECCEECCCCcccHHHCCCCCCC---
Confidence 5678999999888 4 578999999999999999999 99999999999999999999 999999999998
Q ss_pred ceEEEEEEecCCccch
Q 032784 83 GVIIMHVVVQPSLAKT 98 (133)
Q Consensus 83 ~~~tlhlv~~~~~~~~ 98 (133)
+|||++++++|++
T Consensus 81 ---tl~lv~r~~gg~~ 93 (94)
T 2kan_A 81 ---EIVVFLKSINRAK 93 (94)
T ss_dssp ---EEEEEECCCSSCC
T ss_pred ---EEEEEEeCCCCCC
Confidence 8999999998764
No 16
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=124.74 Aligned_cols=75 Identities=19% Similarity=0.425 Sum_probs=68.8
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
..+.+.|+++..+|+. +.+++++++||.+||++|+++ .++|+++|||+|+||.|+|+.||++|+| +|+
T Consensus 14 ~~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~--- 81 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAAS-------VSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGK--- 81 (88)
T ss_dssp -CCEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTSBGGGGTC-TTE---
T ss_pred CCCeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHHH-------hCCCHHHEEEEECCEECCCCCcHHHcCC-CCc---
Confidence 3567999999999955 478999999999999999999 9999999999999999999999999999 788
Q ss_pred ceEEEEEEec
Q 032784 83 GVIIMHVVVQ 92 (133)
Q Consensus 83 ~~~tlhlv~~ 92 (133)
|+||++|
T Consensus 82 ---~i~lv~R 88 (88)
T 4eew_A 82 ---VIHLVER 88 (88)
T ss_dssp ---EEEEEEC
T ss_pred ---EEEEEEC
Confidence 8999986
No 17
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=2.6e-20 Score=128.82 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=72.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
++.+.|.|+..+|+. +.+++++++||.+||++|+++ .++++++|||+|+||.|+|+.+|++|+|.+|+
T Consensus 20 ~~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~---- 87 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES---- 87 (98)
T ss_dssp --CCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHHH-------HCCCGGGCEEEETTEECCTTCBSGGGTCCTTE----
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------hCCChhHEEEEECCEECCCCCcHHHCCCCCCC----
Confidence 567899999999955 479999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
+|||++|.+||
T Consensus 88 --~i~l~~rl~GG 98 (98)
T 4hcn_B 88 --TLHLVLRLRGG 98 (98)
T ss_dssp --EEEEECBCSCC
T ss_pred --EEEEEEecCCC
Confidence 89999999875
No 18
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=126.24 Aligned_cols=80 Identities=19% Similarity=0.140 Sum_probs=69.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.+.|.|+..+|+. +.+++++++||++||++|++. .++|+++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 3 ~~m~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~~-------~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~----- 69 (88)
T 2hj8_A 3 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSGL-------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 69 (88)
T ss_dssp CEEEEEEEETTSCE-EEEEEESSSBHHHHHHHHHHH-------TCSCTTTEEEESSSSCCCTTSBHHHHHCSTTC-----
T ss_pred ccEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHHH-------hCCChhHEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 46889999999954 578999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCccch
Q 032784 85 IIMHVVVQPSLAKT 98 (133)
Q Consensus 85 ~tlhlv~~~~~~~~ 98 (133)
++||++++++++-
T Consensus 70 -~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 70 -TVFMNLRLRGGLE 82 (88)
T ss_dssp -EEEEEEC------
T ss_pred -EEEEEEEcCCCcc
Confidence 8999999888653
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.82 E-value=5.7e-20 Score=125.07 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=71.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
...+.|+|+..+|+. +.+++++++||.+||++|++. .|+++++|||+|+|+.|+|+.||++|||.+|+
T Consensus 15 ~~~m~i~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~---- 82 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTH-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES---- 82 (91)
T ss_dssp CCSEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGCEEEETTEECCTTCBTGGGTCCTTC----
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHhh-------hCCChhhEEEEECCeECCCcCcHHHCCCCCCC----
Confidence 567899999999955 478999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCC
Q 032784 84 VIIMHVVVQPS 94 (133)
Q Consensus 84 ~~tlhlv~~~~ 94 (133)
++||++|++
T Consensus 83 --~i~l~~rlr 91 (91)
T 3v6c_B 83 --TLHLVLRLR 91 (91)
T ss_dssp --EEEEECCCC
T ss_pred --EEEEEEecC
Confidence 899999864
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=3.7e-20 Score=122.95 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=70.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.+.|.++..+|.. +.+++++++||.+||++|+++ .++|+++|||+|+|+.|+|+.||++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3n3k_B 2 SHMRIVVKTLMGRT-IILEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHS----- 68 (85)
T ss_dssp --CEEEEECGGGCE-EEEECCTTCBHHHHHHHHHHH-------HCCCGGGEEEEETBEECCTTCBTTTTTCCTTC-----
T ss_pred CeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCCCHHHEEEEECCeECCCCCCHHHCCCCCCC-----
Confidence 35788999999955 578999999999999999999 89999999999999999999999999999999
Q ss_pred EEEEEEecCCccc
Q 032784 85 IIMHVVVQPSLAK 97 (133)
Q Consensus 85 ~tlhlv~~~~~~~ 97 (133)
++|++++.++++
T Consensus 69 -~i~l~~rl~GG~ 80 (85)
T 3n3k_B 69 -ALYLLLKLRGGG 80 (85)
T ss_dssp -EEEEEECCC---
T ss_pred -EEEEEEeccCCC
Confidence 899999999875
No 21
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=6.2e-20 Score=121.63 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=72.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.+.|.++..+|.. +.+++++++||.+||++|+++ .++|+++|||+|+|+.|+|+.||++|+|.+++
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~----- 68 (85)
T 3mtn_B 2 SHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWS----- 68 (85)
T ss_dssp -CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGCEEEETTEECCTTSBTGGGTCCTTC-----
T ss_pred CeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHHH-------HCcChHHEEEEECCEECCCCCCHHHcCCCCCC-----
Confidence 46889999999955 579999999999999999999 89999999999999999999999999999999
Q ss_pred EEEEEEecCCccc
Q 032784 85 IIMHVVVQPSLAK 97 (133)
Q Consensus 85 ~tlhlv~~~~~~~ 97 (133)
++||+++.++++
T Consensus 69 -~l~l~~r~~GG~ 80 (85)
T 3mtn_B 69 -TLFLLLRLRGGG 80 (85)
T ss_dssp -EEEEECCCCCC-
T ss_pred -EEEEEEECcCCC
Confidence 899999999874
No 22
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.82 E-value=6.9e-20 Score=118.66 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=68.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|+++..+|+. ..+++++++||.+||++|++. .++++++|||+|+|+.|+|+.||++|+|.+|+ ++
T Consensus 2 ~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~-------~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~i 67 (76)
T 1ndd_A 2 LIKVKTLTGKE-IEIDIEPTDKVERIKERVEEK-------EGIPPQQQRLIYSGKQMNDEKTAADYKILGGS------VL 67 (76)
T ss_dssp EEEEECTTSCE-EEEECCTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTSBGGGGTCCTTC------EE
T ss_pred EEEEECCCCCE-EEEEECCCChHHHHHHHHHHH-------HCcChHHEEEEECCEECCCCCcHHHcCCCCCC------EE
Confidence 67888899954 478999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCCcc
Q 032784 88 HVVVQPSLA 96 (133)
Q Consensus 88 hlv~~~~~~ 96 (133)
|++++.+||
T Consensus 68 ~l~~~~~GG 76 (76)
T 1ndd_A 68 HLVLALRGG 76 (76)
T ss_dssp EEEECCC--
T ss_pred EEEEeCCCC
Confidence 999998875
No 23
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.81 E-value=5e-20 Score=127.56 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=73.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.+.|++++.+|+.+ .++|++++||.+||++|+++ .|+++++|||||+|++|+|+.||++|+|.+++
T Consensus 20 ~~m~I~Vk~~~g~~~-~l~v~~~~tv~~lK~~i~~~-------~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~----- 86 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQR-------QGVPMNSLRFLFEGQRIADNHTPKELGMEEED----- 86 (97)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTCCHHHHTCCTTC-----
T ss_pred CcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-------HCCChhhEEEEECCeEcCCCCCHHHCCCCCCC-----
Confidence 459999999999654 79999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCcc
Q 032784 85 IIMHVVVQPSLA 96 (133)
Q Consensus 85 ~tlhlv~~~~~~ 96 (133)
+|||+++.+||
T Consensus 87 -~I~l~~~~~GG 97 (97)
T 1wyw_B 87 -VIEVYQEQTGG 97 (97)
T ss_dssp -EEEEEESSSCC
T ss_pred -EEEEEEecCCC
Confidence 89999999875
No 24
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=119.50 Aligned_cols=78 Identities=19% Similarity=0.325 Sum_probs=71.7
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
+.+.+.|+++..+|.. +.+++++++||++||++|++. .++++++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 4 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~LK~~i~~~-------~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~--- 72 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRE-CSLQVPEDELVSTLKQLVSEK-------LNVPVRQQRLLFKGKALADGKRLSDYSIGPNS--- 72 (81)
T ss_dssp SSSSEEEEEEETTSCE-EEEEECSSCBHHHHHHHHHHH-------TCCCTTTCEEEETTEECCTTSBGGGGTCCSSB---
T ss_pred CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCcCHHHEEEEECCeECCCCCcHHHcCCCCCC---
Confidence 3678999999999954 578999999999999999999 99999999999999999999999999999999
Q ss_pred ceEEEEEEecCC
Q 032784 83 GVIIMHVVVQPS 94 (133)
Q Consensus 83 ~~~tlhlv~~~~ 94 (133)
++|++++++
T Consensus 73 ---~i~l~~~~~ 81 (81)
T 2dzi_A 73 ---KLNLVVKPL 81 (81)
T ss_dssp ---CCEEECCCC
T ss_pred ---EEEEEEeCC
Confidence 899998764
No 25
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.81 E-value=5e-20 Score=130.42 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=69.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
++.+.|.|++..|+.+ .++|+|++||.+||++|+++ +|+++++|||||+||+|+|+.||++|+|.+++
T Consensus 26 ~~mm~I~VKtl~Gk~i-~lev~p~dTV~~lK~~Ia~k-------~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gs---- 93 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAAQ-------TGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGM---- 93 (100)
T ss_dssp CCEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHHH-------HCCCGGGCEEEETTEECCSSCBHHHHTCCTTE----
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHH-------hCCCHHHEEEEECCEECCCCCCHHHcCCCCCC----
Confidence 5569999999999655 68999999999999999999 99999999999999999999999999999998
Q ss_pred eEEEEEEe
Q 032784 84 VIIMHVVV 91 (133)
Q Consensus 84 ~~tlhlv~ 91 (133)
|+||+.
T Consensus 94 --tlhL~~ 99 (100)
T 1uh6_A 94 --NLELYY 99 (100)
T ss_dssp --EEEEEC
T ss_pred --EEEEEe
Confidence 899874
No 26
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=5.8e-20 Score=126.43 Aligned_cols=75 Identities=21% Similarity=0.459 Sum_probs=66.9
Q ss_pred EEEEEEeCCCCeeeeEEeC--CcccHHHHHHHH-HhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCC-CCCCCCC
Q 032784 7 IDIKFRLYDGSDIGPFRYS--SASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG 82 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~--p~~TV~~lK~~I-~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I-~~g~~~~ 82 (133)
+.|.||+.+|..+ .++++ +++||.+||++| ++. .|+|+++|||||+||+|+|+.||++|+| ++|+
T Consensus 2 mqI~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~s--- 70 (87)
T 2lxa_A 2 VHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEE-------KASHISEIKLLLKGKVLHDNLFLSDLKVTPANS--- 70 (87)
T ss_dssp CEEEEEECSSSCE-ECCEECCTTCBHHHHHHHHHHTT-------SCSSSTTEEEEETTEECCTTCBHHHHCCCGGGC---
T ss_pred EEEEEEcCCCCEE-EEEEcCCCCCcHHHHHHHHHHHh-------cCCChHHEEEEECCEECcCcCCHHHcCCCCCCC---
Confidence 5789999999654 56655 999999999999 888 8999999999999999999999999999 6888
Q ss_pred ceEEEEEEecCCc
Q 032784 83 GVIIMHVVVQPSL 95 (133)
Q Consensus 83 ~~~tlhlv~~~~~ 95 (133)
++||++++.-
T Consensus 71 ---tl~v~~~~~~ 80 (87)
T 2lxa_A 71 ---TITVMIKPNL 80 (87)
T ss_dssp ---EEEEEECCCC
T ss_pred ---EEEEEcCCCc
Confidence 8999998764
No 27
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.81 E-value=1.8e-19 Score=116.64 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=69.9
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|+++..+|.. ..+++++++||.+||++|++. .++++++|||+|+|+.|+|+.||++|+|.+|+ ++
T Consensus 2 ~i~vk~~~g~~-~~i~v~~~~tv~~lK~~i~~~-------~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~------~i 67 (76)
T 3a9j_A 2 QIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQRES------TL 67 (76)
T ss_dssp EEEEEETTSCE-EEEECCTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTCBTGGGTCCTTC------EE
T ss_pred EEEEEcCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCcCHHHeEEEECCeECCCCCcHHHcCCCCCC------EE
Confidence 67888899954 478999999999999999999 89999999999999999999999999999999 89
Q ss_pred EEEecCCcc
Q 032784 88 HVVVQPSLA 96 (133)
Q Consensus 88 hlv~~~~~~ 96 (133)
|++++++||
T Consensus 68 ~l~~~~~GG 76 (76)
T 3a9j_A 68 HLVLRLRGG 76 (76)
T ss_dssp EEEECCCCC
T ss_pred EEEEeCCCC
Confidence 999999875
No 28
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=8.4e-20 Score=129.24 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=65.1
Q ss_pred EEEEEEeCC----CCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 7 IDIKFRLYD----GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 7 i~l~~rl~~----G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
..|++++.+ | +.++++|++++||.+||++|+++ .|+|+++|||||+||+|+|++||++|+|++|+
T Consensus 16 ati~V~~~~~~~~~-~~~~lev~~~~TV~~lK~kI~~k-------~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gs--- 84 (100)
T 1wju_A 16 ATIEVFLPPRLKKD-RKNLLETRLHITGRELRSKIAET-------FGLQENYIKIVINKKQLQLGKTLEEQGVAHNV--- 84 (100)
T ss_dssp EEEEEECCTTTCCS-SSEEEEEESSSBHHHHHHHHHHH-------TTCCSTTCEEEETTEECCTTSBHHHHTCCSSE---
T ss_pred EEEEEEecCCCCCC-cEEEEEeCCcCHHHHHHHHHHHH-------HCcCHHHeEEEeCCeECCCCCcHHHcCCCCCC---
Confidence 356777777 5 44579999999999999999999 99999999999999999999999999999999
Q ss_pred ceEEEEEEecCCcc
Q 032784 83 GVIIMHVVVQPSLA 96 (133)
Q Consensus 83 ~~~tlhlv~~~~~~ 96 (133)
++ +++++++.
T Consensus 85 ---ti-~vl~lrg~ 94 (100)
T 1wju_A 85 ---KA-MVLELKQS 94 (100)
T ss_dssp ---EE-EEECCCCC
T ss_pred ---EE-EEEEECCC
Confidence 77 45556553
No 29
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.80 E-value=2.8e-19 Score=125.49 Aligned_cols=77 Identities=21% Similarity=0.464 Sum_probs=68.0
Q ss_pred CceEEEEEEeCCCCeeeeE--EeCCcccHHHHHHHH-HhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCC-CCCC
Q 032784 4 EELIDIKFRLYDGSDIGPF--RYSSASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGE 79 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~--~v~p~~TV~~lK~~I-~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I-~~g~ 79 (133)
++.+.|.|++.+|+.+ ++ ++++++||++||++| ++. .|+++++|||||+||+|+|+.||++|+| ++|+
T Consensus 17 ~~~m~I~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~-------~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ 88 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEE-------KASHISEIKLLLKGKVLHDNLFLSDLKVTPANS 88 (98)
T ss_dssp -CCEEEEEEECSSSCE-EEEEEECTTCBHHHHHHHHHHTT-------SCSCGGGEEEEETTEEECTTCBGGGSCCBTTBC
T ss_pred CCCEEEEEEcCCCCEE-EEEEecCCCChHHHHHHHHHHHh-------cCCChhhEEEEECCEECcCcCCHHHcCcCCCCC
Confidence 5689999999999643 44 667999999999999 777 7999999999999999999999999999 9999
Q ss_pred CCCceEEEEEEecCC
Q 032784 80 VPGGVIIMHVVVQPS 94 (133)
Q Consensus 80 ~~~~~~tlhlv~~~~ 94 (133)
++||+++.+
T Consensus 89 ------ti~lmvskp 97 (98)
T 4a20_A 89 ------TITVMIKPN 97 (98)
T ss_dssp ------EEEEEECCC
T ss_pred ------EEEEEEeCC
Confidence 899998654
No 30
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.80 E-value=3e-21 Score=145.00 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=1.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|.|+..+|.. +.+++++++||.+||++|++. .++|+++|||+|+|++|+|+.||++|+|.+|+ |
T Consensus 1 MqI~VK~l~G~~-~~l~V~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gs------t 66 (152)
T 3u5c_f 1 MQIFVKTLTGKT-ITLEVESSDTIDNVKSKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------T 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCE-EEEEECCCCCHHHHHHHHHHH-------hCCCHHHEEEEECCEEccccCcHHHcCCCCCC------E
Confidence 357788889955 578999999999999999999 99999999999999999999999999999999 8
Q ss_pred EEEEecCCccchhhhhhh
Q 032784 87 MHVVVQPSLAKTKTALKV 104 (133)
Q Consensus 87 lhlv~~~~~~~~~~~k~~ 104 (133)
|||+++++||++++|||.
T Consensus 67 L~Lvlrl~GGgKkrkKk~ 84 (152)
T 3u5c_f 67 LHLVLRLRGGGKKRKXXX 84 (152)
T ss_dssp ---------------CCC
T ss_pred EEEEeeccCCCcCccccc
Confidence 999999999988876653
No 31
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.80 E-value=1.4e-19 Score=122.75 Aligned_cols=75 Identities=23% Similarity=0.274 Sum_probs=69.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCee-cCCCCccccCCCCCCCCCCc
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-LENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~-L~D~~tLsd~~I~~g~~~~~ 83 (133)
+-+.|.++..+|+. +.+++++++||++||++|++. .|+|+++|||+|+|++ |+|++||++|+|.+|+
T Consensus 9 ~~~~i~vk~l~g~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs---- 76 (84)
T 2kk8_A 9 SHMKFLVENLNGSS-FELEVDYRDTLLVVKQKIERS-------QHIPVSKQTLIVDGIVILREDLTVEQCQIVPTS---- 76 (84)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHHH-------HTCCGGGEEEEETTEECCCSSSBHHHHTCCTTS----
T ss_pred CceEEEEEecCCcE-EEEEECCCChHHHHHHHHHHH-------HCcChHHEEEEECCEEecCCcCCHHHcCCCCCC----
Confidence 45678999999955 479999999999999999999 9999999999999999 9999999999999999
Q ss_pred eEEEEEEecC
Q 032784 84 VIIMHVVVQP 93 (133)
Q Consensus 84 ~~tlhlv~~~ 93 (133)
++||+++|
T Consensus 77 --~i~lv~~p 84 (84)
T 2kk8_A 77 --DIQLEVSS 84 (84)
T ss_dssp --CEEEEECC
T ss_pred --EEEEEEcC
Confidence 89999875
No 32
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.8e-19 Score=122.37 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=67.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
.+.|.+++.+|+. +.+++++++||++||++|++. .++|+++|||+|+|+.|+|+.||++|+|.+++
T Consensus 9 ~~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------ 74 (88)
T 1sif_A 9 GLQLFIKTLTGKT-FTVEMEPSDTIENLKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------ 74 (88)
T ss_dssp -CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHHH-------HCCCGGGCEEEETTEECCTTSBSGGGTCCTTC------
T ss_pred ceEEEEEeCCCCE-EEEEECCCChHHHHHHHHHHH-------HCcChhhEEEEECCEECCCCCcHHHcCCCCCC------
Confidence 3578899999955 578999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEecCCccc
Q 032784 86 IMHVVVQPSLAK 97 (133)
Q Consensus 86 tlhlv~~~~~~~ 97 (133)
++||+++++||+
T Consensus 75 ~i~l~~r~~GG~ 86 (88)
T 1sif_A 75 TLHLVLRLRGGG 86 (88)
T ss_dssp EEEEEC------
T ss_pred EEEEEEeCCCCC
Confidence 899999999874
No 33
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.80 E-value=3.1e-19 Score=126.94 Aligned_cols=81 Identities=15% Similarity=0.272 Sum_probs=74.1
Q ss_pred ceEEEEEEeCC----------CCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCC
Q 032784 5 ELIDIKFRLYD----------GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (133)
Q Consensus 5 ~~i~l~~rl~~----------G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~ 74 (133)
..|.|+|++.+ | +.+.++|++++||.+||++|++. .|+++++|||+|+|+.|+|+.||++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G-~~~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrL~~~Gk~L~D~~tL~~y~ 95 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNG-QGLVFTLPLTDQVSVIKVKIHEA-------TGMPAGKQKLQYEGIFIKDSNSLAYYN 95 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSS-EEEEEEECSCSBTHHHHHHHHHH-------SSCCTTTEEEEETTEEECTTSBHHHHT
T ss_pred CCEEEEEEcCCCccccccccCC-eEEEEEECCCCCHHHHHHHHHHH-------HCCChHHEEEEECCEECCCCCCHHHCC
Confidence 47888898874 5 45679999999999999999999 999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEEEecCCccchh
Q 032784 75 IPYGEVPGGVIIMHVVVQPSLAKTK 99 (133)
Q Consensus 75 I~~g~~~~~~~tlhlv~~~~~~~~~ 99 (133)
|.+++ +|||+++.+||+++
T Consensus 96 i~~g~------~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 96 MASGA------VIHLALKERSGPSS 114 (115)
T ss_dssp CCSSC------EEEEEECCCSCCSC
T ss_pred CCCCC------EEEEEEEcCCCCCC
Confidence 99999 89999999998664
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.79 E-value=3.4e-19 Score=126.31 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=72.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
..+.|+|+..+|+. +.+++++++||.+||++|+++ .++|+++|||+|+||.|+|+.||++|+|.+++
T Consensus 34 ~~m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs----- 100 (111)
T 3vdz_A 34 LAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES----- 100 (111)
T ss_dssp GCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTSBTTTTTCCTTC-----
T ss_pred ccEEEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHHH-------hCCChHHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 46899999999955 479999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCcc
Q 032784 85 IIMHVVVQPSLA 96 (133)
Q Consensus 85 ~tlhlv~~~~~~ 96 (133)
++||++|.+||
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 3vdz_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEecCCC
Confidence 89999999875
No 35
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.79 E-value=3.6e-19 Score=125.71 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=73.5
Q ss_pred ceEEEEEEeC---CCCeeeeEEeCC-cccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCC
Q 032784 5 ELIDIKFRLY---DGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (133)
Q Consensus 5 ~~i~l~~rl~---~G~~i~~~~v~p-~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~ 80 (133)
..+.|+|++. +| +.+.+++++ ++||.+||++|++. .|+++++|||+|+|++|+|+.||++|+|.+|+
T Consensus 26 ~~i~i~Vk~~~~~~g-~~~~l~v~~l~~TV~~LK~~I~~~-------~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~- 96 (111)
T 1we6_A 26 GPATIRVSKPNENDG-QFMEITVQSLSENVGSLKEKIAGE-------IQIPANKQKLSGKAGFLKDNMSLAHYNVGAGE- 96 (111)
T ss_dssp SCEEEEECCTTCSSS-CCEEEEESCSSSBHHHHHHHHHHH-------TTCCTTTSEEECSSSBCCTTSBTTTTTCSSSC-
T ss_pred CcEEEEEEecccCCC-cEEEEEecCCCCcHHHHHHHHHHH-------HCCCHHHeEEEECCEECCCCCcHHHCCCCCCC-
Confidence 4688999998 77 445799998 99999999999999 99999999999999999999999999999999
Q ss_pred CCceEEEEEEecCCccch
Q 032784 81 PGGVIIMHVVVQPSLAKT 98 (133)
Q Consensus 81 ~~~~~tlhlv~~~~~~~~ 98 (133)
++||+++.+||++
T Consensus 97 -----~l~l~~r~~GGk~ 109 (111)
T 1we6_A 97 -----ILTLSLRERSGPS 109 (111)
T ss_dssp -----EEEEECSSCCSSC
T ss_pred -----EEEEEEEcCCCCC
Confidence 8999999999853
No 36
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.79 E-value=4.2e-19 Score=130.85 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=70.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
..+.|.++..+|+. +.+++++++||++||++|+++ .|+|+++|||+|+|+.|+|+.||++|+|++|+
T Consensus 80 ~~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~----- 146 (159)
T 3rt3_B 80 EPLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSGL-------EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLS----- 146 (159)
T ss_dssp CCEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTSBGGGGTCCTTC-----
T ss_pred CcEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHHH-------HCCCHHHEEEEECCeecCCCCCHHHcCCCCCC-----
Confidence 45678888899955 579999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCccc
Q 032784 85 IIMHVVVQPSLAK 97 (133)
Q Consensus 85 ~tlhlv~~~~~~~ 97 (133)
|+||++|++||.
T Consensus 147 -~l~l~~rl~GG~ 158 (159)
T 3rt3_B 147 -TVFMNLRLRGGG 158 (159)
T ss_dssp -EEEEEECCC---
T ss_pred -EEEEEEecCCCC
Confidence 999999999985
No 37
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.7e-19 Score=125.90 Aligned_cols=78 Identities=23% Similarity=0.456 Sum_probs=67.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|+|+..+|+. +.++|++++||.+||++|++. .|+++++|||||+||+|+|+.+|++|||.+|+ +
T Consensus 2 m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~------~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEK-VPLDLEPSNTILETKTKLAQS-------ISCEESQIKLIYSGKVLQDSKTVSECGLKDGD------Q 67 (106)
T ss_dssp -CEEEECTTCCE-EEECCCTTSBHHHHHHHHHHT-------TTSCGGGCEEEETTEECCTTSBTTTTTCCTTC------E
T ss_pred EEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCCChhhEEEEECCEECCCcCCHHHcCCCCCC------E
Confidence 568889999955 578999999999999999999 89999999999999999999999999999999 8
Q ss_pred EEEEecCCccch
Q 032784 87 MHVVVQPSLAKT 98 (133)
Q Consensus 87 lhlv~~~~~~~~ 98 (133)
|||+++.+.+..
T Consensus 68 i~lv~~~~~~~~ 79 (106)
T 3m62_B 68 VVFMVSQKKSTK 79 (106)
T ss_dssp EEEECCC-----
T ss_pred EEEEEcCCCCCC
Confidence 999997665433
No 38
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=130.40 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=72.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+..+.|++++..+.+.+.++|+++.||.+||++++++ .++|+++|||||+||+|+|++||++|||++|+
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~-------~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~---- 81 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHL-------LGIPHSVLQIRYSGKILKNNETLVQHGVKPQE---- 81 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHH-------HTCCTTTEEEEETTEEECSSCCHHHHSCCSSC----
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhh-------hCCChHHEEEEECCeEcCCcchHHHcCCCCCC----
Confidence 6678999986654466689999999999999999999 89999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
|+||+++...|
T Consensus 82 --TIhLvi~s~~p 92 (118)
T 2daf_A 82 --IVQVEIFSTNP 92 (118)
T ss_dssp --EEEEEEEESCT
T ss_pred --EEEEEEecCCC
Confidence 99999987665
No 39
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.2e-19 Score=123.94 Aligned_cols=79 Identities=23% Similarity=0.396 Sum_probs=73.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+..+.|+|+..+| ++ .+++++++||.+||++|++. .++++++|||+|+||.|+|+.||++|+|.+|+
T Consensus 20 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gs---- 86 (100)
T 1yqb_A 20 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQR-------FKAHPDQLVLIFAGKILKDPDSLAQCGVRDGL---- 86 (100)
T ss_dssp TTEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTSBHHHHTCCTTC----
T ss_pred CCeEEEEEEcCCC-cE-EEEECCCCcHHHHHHHHHHH-------HCcChhhEEEEECCEECCCcCcHHHCCCCCCC----
Confidence 6679999999999 54 78999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccc
Q 032784 84 VIIMHVVVQPSLAK 97 (133)
Q Consensus 84 ~~tlhlv~~~~~~~ 97 (133)
++||+++++++.
T Consensus 87 --tI~l~~r~~~~p 98 (100)
T 1yqb_A 87 --TVHLVIKRQHRA 98 (100)
T ss_dssp --EEEEEECCCCSC
T ss_pred --EEEEEEcCCCCC
Confidence 899999887754
No 40
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.79 E-value=1e-18 Score=116.38 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=68.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
..+.|+++..+|+. +.+++++++||++||++|++++.. .++++++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 4 ~~m~i~vk~~~g~~-~~~~v~~~~TV~~lK~~i~~~~~~----~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~----- 73 (85)
T 2wyq_A 4 MAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKGR----DAFPVAGQKLIYAGKILSDDVPIRDYRIDEKN----- 73 (85)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTSBHHHHHHHHHHHHCT----TTCCGGGEEEEETTEECCTTSBGGGGCCCTTS-----
T ss_pred ceEEEEEEECCCCE-EEEEECCCCCHHHHHHHHHhhccc----cCCCHHHeEEEECCEECcCCCCHHHcCCCCCC-----
Confidence 46889999999955 478999999999999999995311 57999999999999999999999999999999
Q ss_pred EEEEEEecCC
Q 032784 85 IIMHVVVQPS 94 (133)
Q Consensus 85 ~tlhlv~~~~ 94 (133)
++|++++++
T Consensus 74 -~i~l~~~~~ 82 (85)
T 2wyq_A 74 -FVVVMVTKT 82 (85)
T ss_dssp -EEEEEEC--
T ss_pred -EEEEEEcCC
Confidence 899998654
No 41
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=1.9e-19 Score=123.36 Aligned_cols=79 Identities=24% Similarity=0.303 Sum_probs=72.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
++.+.|+|+.. |+. +.+++++++||.+||++|++. .++++++|||+|+|+.|+|++||++|+|.+++
T Consensus 15 ~~~m~i~Vk~~-g~~-~~~~v~~~~TV~~LK~~I~~~-------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~---- 81 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDC-HEFFLAENSNVRRFKKQISKY-------LHCNADRLVLIFTGKILRDQDILSQRGILDGS---- 81 (96)
T ss_dssp SCEEEEEEECS-SSE-EEEEEETTCCHHHHHHHHHHH-------TCSCTTTBCCEETTEECCTTSCHHHHTCCTTE----
T ss_pred CCcEEEEEEEC-CeE-EEEEECCCCCHHHHHHHHHHH-------hCCCHHHEEEEECCEECCCcCCHHHCCCCCCC----
Confidence 46789999988 744 578999999999999999999 99999999999999999999999999999998
Q ss_pred eEEEEEEecCCccc
Q 032784 84 VIIMHVVVQPSLAK 97 (133)
Q Consensus 84 ~~tlhlv~~~~~~~ 97 (133)
+|||++++++++
T Consensus 82 --~i~l~~~~~~g~ 93 (96)
T 1wx8_A 82 --TVHVVVRSHSGP 93 (96)
T ss_dssp --EEECCBCCSSCS
T ss_pred --EEEEEEeCCCCC
Confidence 899999988764
No 42
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=126.24 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=64.6
Q ss_pred CceEEEEEEeCCCCe-eeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccC--CCCCCCC
Q 032784 4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGEV 80 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~-i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~--~I~~g~~ 80 (133)
+..+.|+||+.+|.. ...+++++++||.+||++|++++| ..+++++|||||+||+|+|++||++| +|++++
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~-----g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~- 94 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYP-----SKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYH- 94 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHST-----TCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEE-
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhc-----CCCChhhEEEEECCEECCCCCCHHHHhcCCCCCC-
Confidence 567999999999962 237889999999999999999753 23456999999999999999999999 999988
Q ss_pred CCceEEEEEE
Q 032784 81 PGGVIIMHVV 90 (133)
Q Consensus 81 ~~~~~tlhlv 90 (133)
||||+
T Consensus 95 -----tihLv 99 (99)
T 2kdb_A 95 -----MVHLV 99 (99)
T ss_dssp -----EEEEC
T ss_pred -----EEEeC
Confidence 89985
No 43
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.78 E-value=1e-18 Score=113.99 Aligned_cols=72 Identities=29% Similarity=0.354 Sum_probs=66.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
+.|+++. +| +.+.+++++++||.+||++|++. .|+++++|||+|+|+.|+|+.||++|||.+|+ +
T Consensus 5 m~i~vk~-~g-~~~~~~v~~~~tV~~LK~~i~~~-------~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~------~ 69 (77)
T 2bwf_A 5 LNIHIKS-GQ-DKWEVNVAPESTVLQFKEAINKA-------NGIPVANQRLIYSGKILKDDQTVESYHIQDGH------S 69 (77)
T ss_dssp EEEEEEE-TT-EEEEEEECTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTC------E
T ss_pred EEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHH-------hCCCHHHEEEEECCeEcCCCCCHHHcCCCCCC------E
Confidence 7888888 78 45679999999999999999999 99999999999999999999999999999999 8
Q ss_pred EEEEecC
Q 032784 87 MHVVVQP 93 (133)
Q Consensus 87 lhlv~~~ 93 (133)
+|++.++
T Consensus 70 i~l~~~~ 76 (77)
T 2bwf_A 70 VHLVKSQ 76 (77)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9998764
No 44
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=122.34 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=68.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
..+.|.++. |+ .+.+++++++||.+||++|++. .++++++|||+|+|+.|+|+.||++|+|.+++
T Consensus 18 ~~m~I~Vk~--g~-~~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gs----- 82 (93)
T 2l7r_A 18 GSMQLFVRA--QE-LHTFEVTGQETVAQIKAHVASL-------EGIAPEDQVVLLAGAPLEDEATLGQCGVEALT----- 82 (93)
T ss_dssp --CEEEEES--SS-EEEEECCSSCBHHHHHHHHHHH-------HTCCGGGCEEEETTEECCTTSBHHHHTCCSSC-----
T ss_pred CcEEEEEEC--CC-EEEEEeCCCCcHHHHHHHHHHH-------hCcChhHEEEEECCEECCCCCcHHHCCCCCCC-----
Confidence 356777776 74 4579999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCcc
Q 032784 85 IIMHVVVQPSLA 96 (133)
Q Consensus 85 ~tlhlv~~~~~~ 96 (133)
++||++|++||
T Consensus 83 -tI~lv~rl~GG 93 (93)
T 2l7r_A 83 -TLEVAGRMLGG 93 (93)
T ss_dssp -EEEEECCCCCC
T ss_pred -EEEEEEecCCC
Confidence 89999999875
No 45
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=9.5e-19 Score=127.00 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=68.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+..+.|+|+.. |.. +.++|++++||.+||++|++. .++++++|||||+||+|+|++||++|+|.+|+
T Consensus 30 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gs---- 96 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAISKR-------FKSQTDQLVLIFAGKILKDQDTLIQHGIHDGL---- 96 (125)
T ss_dssp CCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHHHHH-------HCSCSSSEEEEETTEEESTTSCGGGTTCSSSE----
T ss_pred CCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHHHHH-------HCcCcceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 45789999998 744 578999999999999999999 99999999999999999999999999999998
Q ss_pred eEEEEEEecCCccchhh
Q 032784 84 VIIMHVVVQPSLAKTKT 100 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~~~ 100 (133)
+|||++++.+++.-.
T Consensus 97 --tI~lv~~~~gg~~~~ 111 (125)
T 1j8c_A 97 --TVHLVIKRDPNSSSV 111 (125)
T ss_dssp --EEEEEEC--------
T ss_pred --EEEEEeccCCCCCCc
Confidence 899999998876543
No 46
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.78 E-value=2.6e-19 Score=130.10 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=64.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCC-------CC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIP-------YG 78 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~-------~g 78 (133)
++.|+++ .|+..+.+++++++||++||++|+++ +|+|+++|||||+||+|+|++||++|||. .+
T Consensus 2 ~mfl~ir--~~ktti~lev~~sdTV~~lK~kI~~~-------egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~ 72 (118)
T 2fnj_B 2 DVFLMIR--RHKTTIFTDAKESSTVFELKRIVEGI-------LKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp EEEEEEE--EBTEEEEEEEETTSBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBC
T ss_pred cEEEEEe--cCCEEEEEEeCCcChHHHHHHHHHHH-------hCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCC
Confidence 3455554 56555678999999999999999999 99999999999999999999999999999 45
Q ss_pred CCCCceEEEEEEecCCcc
Q 032784 79 EVPGGVIIMHVVVQPSLA 96 (133)
Q Consensus 79 ~~~~~~~tlhlv~~~~~~ 96 (133)
+ |+||++| .++
T Consensus 73 s------tL~L~lr-~~g 83 (118)
T 2fnj_B 73 A------TVGLAFR-ADD 83 (118)
T ss_dssp E------EEEEEEB-SSS
T ss_pred C------EEEEEec-CCC
Confidence 5 8999999 443
No 47
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.78 E-value=4.8e-19 Score=128.83 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=64.2
Q ss_pred EEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC-CCCceEEEE
Q 032784 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE-VPGGVIIMH 88 (133)
Q Consensus 10 ~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~-~~~~~~tlh 88 (133)
-|++..++.++.+++++++||.+||++|++. +|+|+++|||||+||+|+|++||++|||..+. .+.+.-|+|
T Consensus 4 Fl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~-------~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~ 76 (118)
T 4ajy_B 4 FLMIRRHKTTIFTDAKESSTVFELKRIVEGI-------LKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVG 76 (118)
T ss_dssp EEEEEEBTEEEEEEEETTSBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEE
T ss_pred EEEEecCCEEEEEEcCCCChHHHHHHHHHHH-------HCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEE
Confidence 3444556556678999999999999999999 99999999999999999999999999999811 122223999
Q ss_pred EEecC
Q 032784 89 VVVQP 93 (133)
Q Consensus 89 lv~~~ 93 (133)
|++|.
T Consensus 77 Lvlr~ 81 (118)
T 4ajy_B 77 LAFRA 81 (118)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99986
No 48
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=1.5e-18 Score=118.80 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=70.7
Q ss_pred CCCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCC-CccccCCCCCCCC
Q 032784 2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEV 80 (133)
Q Consensus 2 ~~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~-~tLsd~~I~~g~~ 80 (133)
++++.+.|+|+..+|+. +.++|++++||.+||++|++. . +++|||||+||.|+|+ .||++|+|.+|+
T Consensus 3 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~~-------~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~- 70 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFPG-------Q---ESQMKLIYQGRLLQDPARTLSSLNITNNC- 70 (95)
T ss_dssp CCCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSSS-------T---TTTCEEEETTEECCCSSCBTTTTTCCTTE-
T ss_pred CCCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHhh-------C---cCcEEEEECCEEccCCcCCHHHcCCCCCC-
Confidence 45778999999999954 578999999999999999999 5 9999999999999999 999999999998
Q ss_pred CCceEEEEEEecCCccc
Q 032784 81 PGGVIIMHVVVQPSLAK 97 (133)
Q Consensus 81 ~~~~~tlhlv~~~~~~~ 97 (133)
+|||+++.+.+.
T Consensus 71 -----~i~l~~~~~~~~ 82 (95)
T 1wia_A 71 -----VIHCHRSPPGAA 82 (95)
T ss_dssp -----EEEEECCCCCCC
T ss_pred -----EEEEEECCCCCC
Confidence 899998776543
No 49
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.77 E-value=9.9e-19 Score=132.52 Aligned_cols=79 Identities=23% Similarity=0.303 Sum_probs=71.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.+|+.+|+. ..+++++++||.+||++|+++ .|+|+++|||+|+|+.|+|+.||++|+|++|+ ++
T Consensus 2 qI~Vk~~~Gk~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gs------tI 67 (169)
T 3l0w_B 2 QIFVKTLTGKT-ITLEVESSDTIDNVKSKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------TL 67 (169)
T ss_dssp EEEEEETTSCE-EEEECCTTCBHHHHHHHHHHH-------HCCCTTTEEEEETTEECCTTSBGGGGTCCTTC------EE
T ss_pred EEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHHH-------HCcCHHHEEEEECCccccCcCcHHHcCCCCCC------EE
Confidence 68889999955 478999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCCccchhh
Q 032784 88 HVVVQPSLAKTKT 100 (133)
Q Consensus 88 hlv~~~~~~~~~~ 100 (133)
||++|++||++..
T Consensus 68 ~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 68 HLVLRLRGGGGET 80 (169)
T ss_dssp EEEECCCC---CC
T ss_pred EEEEEeccccccc
Confidence 9999999987654
No 50
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.77 E-value=1.6e-18 Score=119.32 Aligned_cols=77 Identities=19% Similarity=0.298 Sum_probs=70.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|+|+..+|.. +.+++++++||.+||++|++. .++++++|||+|+||.|+|+.||++|+|.+|+ ++
T Consensus 2 ~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~~-------~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~i 67 (98)
T 1yx5_B 2 QIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------TL 67 (98)
T ss_dssp EEEEEETTSCE-EEEECCTTCBHHHHHHHHHHH-------TCCCGGGEEEEETTEECCTTSBTGGGTCCTTC------EE
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCcChhhEEEEECCEECCCCCCHHHcCCCCCC------EE
Confidence 68889999954 478999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCCccch
Q 032784 88 HVVVQPSLAKT 98 (133)
Q Consensus 88 hlv~~~~~~~~ 98 (133)
|++++.++|..
T Consensus 68 ~l~~~~~gG~~ 78 (98)
T 1yx5_B 68 HLVLRLRGGRD 78 (98)
T ss_dssp EEEECCCCC--
T ss_pred EEEEeCCCCCc
Confidence 99999987643
No 51
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.8e-18 Score=121.42 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=71.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
..+.|+|++.+|+ .+.+++++++||.+||++|++. .|+++++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 22 ~~m~I~Vk~~~g~-~~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~----- 88 (106)
T 1ttn_A 22 YECQLRLRLSTGK-DLKLVVRSTDTVFHMKRRLHAA-------EGVEPGSQRWFFSGRPLTDKMKFEELKIPKDY----- 88 (106)
T ss_dssp CSEEEEEEETTTE-EEEEEECTTSHHHHHHHHHHHT-------TCCCSTTCEEEETTEECCTTSHHHHCCCSSSC-----
T ss_pred CeEEEEEEcCCCC-EEEEEeCCCCcHHHHHHHHHHH-------HCcCcccEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 4689999999994 4579999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCcc
Q 032784 85 IIMHVVVQPSLA 96 (133)
Q Consensus 85 ~tlhlv~~~~~~ 96 (133)
++||+++.+.+
T Consensus 89 -ti~lv~~~~~~ 99 (106)
T 1ttn_A 89 -VVQVIVSQPVQ 99 (106)
T ss_dssp -EEEEECCCSSC
T ss_pred -EEEEEEeCCCC
Confidence 89999876654
No 52
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=9.6e-19 Score=122.04 Aligned_cols=83 Identities=6% Similarity=0.081 Sum_probs=73.2
Q ss_pred CceEEEEEEeCCCC---eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCC-CccccCCCCCCC
Q 032784 4 EELIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGE 79 (133)
Q Consensus 4 ~~~i~l~~rl~~G~---~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~-~tLsd~~I~~g~ 79 (133)
.+.+.|+|++.+|. +++.+++++++||++||++|+++ .++++++|||+|+|+.|+|+ +||++|+|.+|+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-------~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~ 77 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-------SGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGD 77 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-------TCCCGGGBCEEETTEEECCSSSBHHHHTCCTTE
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-------HCcChHHeEEEECCEECCCCcccHHHCCCCCCC
Confidence 45578888887653 56679999999999999999999 99999999999999999988 699999999998
Q ss_pred CCCceEEEEEEecCCccchh
Q 032784 80 VPGGVIIMHVVVQPSLAKTK 99 (133)
Q Consensus 80 ~~~~~~tlhlv~~~~~~~~~ 99 (133)
++||+.+++++...
T Consensus 78 ------~l~l~~~~~gg~~~ 91 (102)
T 1v5o_A 78 ------MVVLLQKDNVGLRT 91 (102)
T ss_dssp ------EEEECBCCCCCCSS
T ss_pred ------EEEEEECCCCCCCC
Confidence 89999998887543
No 53
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.9e-18 Score=123.25 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=73.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
...|.+++.+|+ ...+++++++||++||++|++. .++|+++|||+|+|+.|+|+.||++|+|.+++
T Consensus 9 ~~~i~vk~l~G~-~~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gs------ 74 (114)
T 2kdi_A 9 EFQIFAKTLTGK-TITLEVESSDTIDNVKSKIQDK-------EGIPPDQQRLIWAGKQLEDGRTLSDYNIQRES------ 74 (114)
T ss_dssp CCEEEEEETTCC-EEEEECCTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTCBTTTTTCCSSC------
T ss_pred cEEEEEEeCCCc-EEEEEECCCCcHHHHHHHHHHH-------HCcChHHEEEEECCEECCCCCcHHHCCCCCCC------
Confidence 567889999995 4579999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEecCCccch
Q 032784 86 IMHVVVQPSLAKT 98 (133)
Q Consensus 86 tlhlv~~~~~~~~ 98 (133)
++||+++++++..
T Consensus 75 tI~l~~~~~GG~~ 87 (114)
T 2kdi_A 75 TLHLVLRLRGGSM 87 (114)
T ss_dssp EEEEEECCCSSCC
T ss_pred EEEEEEEcCCCce
Confidence 8999999998753
No 54
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=120.97 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=72.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
..+.|+++..+|+. +.+++++++||.+||++|++. .++++++|||+|+||.|+|+.||++|+|.+++
T Consensus 34 ~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs----- 100 (111)
T 2ojr_A 34 LAMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES----- 100 (111)
T ss_dssp SCEEEEEECSSSCE-EEEEECTTCBHHHHHHHHHHH-------HCCCTTTEEEEETTEECCSSCBTTTTTCCTTC-----
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCCHHHHHHHHHHH-------HCcCcccEEEEECCEECCCCCcHHHcCCCCCC-----
Confidence 47899999999955 478999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCCcc
Q 032784 85 IIMHVVVQPSLA 96 (133)
Q Consensus 85 ~tlhlv~~~~~~ 96 (133)
++||+++++||
T Consensus 101 -~I~l~~rl~GG 111 (111)
T 2ojr_A 101 -TLHLVLRLRGG 111 (111)
T ss_dssp -EEEEEECCCC-
T ss_pred -EEEEEEeCCCC
Confidence 89999999875
No 55
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=4.6e-19 Score=126.17 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=71.1
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC---------------CceEEEecCeecC-C
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV---------------TEIKLISSGKILE-N 66 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~---------------~~qrLIy~Gk~L~-D 66 (133)
+...+.|+|++++|+.+ +++|++++||++||++|+++ .++++ ++|||||+|++|. |
T Consensus 4 ~~~~M~I~Vk~l~g~~~-~v~V~~~~TV~dLK~~I~~~-------~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD 75 (105)
T 1v2y_A 4 GSSGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQRY-------VQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTED 75 (105)
T ss_dssp CCCSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHH-------HHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCS
T ss_pred CCCcEEEEEEecCCCEE-EEEECCCChHHHHHHHHHHH-------hCCCcccccCcceeeeeecceeEEEEeCCcCccCC
Confidence 36679999999999665 79999999999999999999 77766 5789999999996 6
Q ss_pred CCccccCCCCCCCCCCceEEEEEEecCCcc
Q 032784 67 NKTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (133)
Q Consensus 67 ~~tLsd~~I~~g~~~~~~~tlhlv~~~~~~ 96 (133)
++||++|||.+|+ +||+++++++.
T Consensus 76 ~~tL~dygI~~g~------~l~lv~~lr~~ 99 (105)
T 1v2y_A 76 RKKLRDYGIRNRD------EVSFIKKLGQK 99 (105)
T ss_dssp SSBHHHHTCCSSE------EEEEEECSCSC
T ss_pred cCCHHHcCCCCCC------EEEEEehhccC
Confidence 7999999999999 89999998874
No 56
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.5e-18 Score=117.50 Aligned_cols=80 Identities=25% Similarity=0.317 Sum_probs=69.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|+|+..+|+.+ .++|++++||.+||++|++.+.. .|+++++|||+|+||.|+|+.||++|+|.+|+ ++
T Consensus 2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~~~----~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~------~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTF-KIDIDPEETVKALKEKIESEKGK----DAFPVAGQKLIYAGKILNDDTALKEYKIDEKN------FV 70 (95)
T ss_dssp EEEEEETTCCEE-EEECCTTSBHHHHHHHHHHHHCT----TTCCTTTEEEEETTEECCTTSBGGGGTCCSSS------EE
T ss_pred EEEEEeCCCCEE-EEEECCCCHHHHHHHHHHhhccc----CCCChhhEEEEECCEECCCcCcHHHCCCCCCC------EE
Confidence 678899999554 78999999999999999997311 47999999999999999999999999999999 89
Q ss_pred EEEecCCccch
Q 032784 88 HVVVQPSLAKT 98 (133)
Q Consensus 88 hlv~~~~~~~~ 98 (133)
|++++.+.+.+
T Consensus 71 ~l~~~~~~~~~ 81 (95)
T 1uel_A 71 VVMVTKPKAVS 81 (95)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99987654433
No 57
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.76 E-value=3.1e-18 Score=119.56 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=70.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
++.+.|+|+.. |.. +.+++++++||++||++|++. .|+++++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 23 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~---- 89 (101)
T 2klc_A 23 PKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISKR-------FKSHTDQLVLIFAGKILKDQDTLSQHGIHDGL---- 89 (101)
T ss_dssp CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHHH-------HTCCGGGEEEEETTEEECTTCCTGGGTCCTTC----
T ss_pred CCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHHH-------HCcChhhEEEEECCEECCCcCcHHHcCCCCCC----
Confidence 56789999988 744 578999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCc
Q 032784 84 VIIMHVVVQPSL 95 (133)
Q Consensus 84 ~~tlhlv~~~~~ 95 (133)
+|||++++++
T Consensus 90 --~I~l~~~~~~ 99 (101)
T 2klc_A 90 --TVHLVIKTQN 99 (101)
T ss_dssp --EEEEEECCSS
T ss_pred --EEEEEEcCCC
Confidence 8999987765
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.5e-18 Score=120.34 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=73.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+..+.|+|+..+| ++ .++|++++||.+||++|++. .++++++|||+|+||.|+|++||++|+|.+++
T Consensus 15 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~---- 81 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQR-------FKAHPDQLVLIFAGKILKDPDSLAQCGVRDGL---- 81 (106)
T ss_dssp SSEEEEEEECSSC-EE-EEEEETTCCHHHHHHHHHHH-------HTCCTTTEEEEETTEECCTTSCHHHHTCCTTE----
T ss_pred CceEEEEEEeCCC-cE-EEEECCCCcHHHHHHHHHHH-------HCcChhhEEEEECCEECCCcCcHHHcCCCCCC----
Confidence 4568999999988 44 78999999999999999999 89999999999999999999999999999998
Q ss_pred eEEEEEEecCCccch
Q 032784 84 VIIMHVVVQPSLAKT 98 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~ 98 (133)
+|||+++++++..
T Consensus 82 --~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 82 --TVHLVIKRQHRAM 94 (106)
T ss_dssp --EEEEEECCCCCSC
T ss_pred --EEEEEEcCCCCCC
Confidence 8999998887644
No 59
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.61 E-value=6.4e-20 Score=119.91 Aligned_cols=74 Identities=23% Similarity=0.353 Sum_probs=68.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.++..+|+. +.+++++++||++||++|++. .|+|+++|||+|+|+.|+|+.||++|+|.+|+ ++
T Consensus 2 ~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~-------~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~------~i 67 (76)
T 3b1l_X 2 IVFVRFNSSYG-FPVEVDSDTSILQLKEVVAKQ-------QGVPADQLRVIFAGKELPNHLTVQNCDLEQQS------IV 67 (76)
Confidence 46778888954 478999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCCc
Q 032784 88 HVVVQPSL 95 (133)
Q Consensus 88 hlv~~~~~ 95 (133)
|++++++|
T Consensus 68 ~l~~rlrg 75 (76)
T 3b1l_X 68 HIVQRPRR 75 (76)
Confidence 99998875
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.2e-18 Score=122.00 Aligned_cols=75 Identities=27% Similarity=0.315 Sum_probs=65.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
...|.|+++. +|+. +.+++++++||++||++|++. .|+++++|||+|+||.|+|+.||++|||++|+
T Consensus 26 ~m~i~I~Vk~-~g~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~---- 92 (101)
T 3m63_B 26 AMSLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINKA-------NGIPVANQRLIYSGKILKDDQTVESYHIQDGH---- 92 (101)
T ss_dssp ---CCEEEEC-SSCC-CCBCCCTTSBHHHHHHHHHHH-------HSCCSTTCCEEETTEECCTTSBTTTTTCCTTE----
T ss_pred CcEEEEEEEE-CCEE-EEEEeCCCCCHHHHHHHHHHH-------HCcChHHEEEEECCEECCCcCcHHHCCCCCCC----
Confidence 3467788886 6744 578999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecC
Q 032784 84 VIIMHVVVQP 93 (133)
Q Consensus 84 ~~tlhlv~~~ 93 (133)
++||+.+.
T Consensus 93 --tI~lv~~~ 100 (101)
T 3m63_B 93 --SVHLVKSQ 100 (101)
T ss_dssp --EEEECCCC
T ss_pred --EEEEEeCC
Confidence 89998764
No 61
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.74 E-value=3.5e-18 Score=132.47 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=73.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
++.|.|++.+|+. ..+++++++||.+||++|++. .++|+++|||+|+|++|+|+.||++|+|++++
T Consensus 105 eMqI~VKtl~Gkt-~~l~V~~s~TV~~LK~kI~~~-------~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gs------ 170 (189)
T 3q3f_A 105 GGQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------ 170 (189)
T ss_dssp CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGCCEEETTEECCTTCBGGGGTCCTTC------
T ss_pred ceeeeeecCCCCE-EEEEeCCCCcHHHHHHHHHhc-------cCCCHHHEEEEECCEECCCCCCHHHCCCCCCC------
Confidence 5789999999955 479999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEecCCccch
Q 032784 86 IMHVVVQPSLAKT 98 (133)
Q Consensus 86 tlhlv~~~~~~~~ 98 (133)
||||++++++|++
T Consensus 171 tI~LvlrlrGG~~ 183 (189)
T 3q3f_A 171 TLHLVLRLRGGGQ 183 (189)
T ss_dssp EEEECCCCCCCCC
T ss_pred EEEEEEEcCCCCc
Confidence 8999999998765
No 62
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=124.38 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=73.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+..+.|.|+..+|+. +.+++++++||.+||++|++. .|+++++|||+|+|+.|+|+.+|++|+|.+++
T Consensus 18 ~~~m~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~-------~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~---- 85 (172)
T 3u30_A 18 GSHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES---- 85 (172)
T ss_dssp -CCEEEEEEETTTEE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTCBTGGGTCCTTC----
T ss_pred CCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCcChHHEEEEECCccccccCCHhHcCCcccc----
Confidence 567899999999954 579999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccc
Q 032784 84 VIIMHVVVQPSLAK 97 (133)
Q Consensus 84 ~~tlhlv~~~~~~~ 97 (133)
++||+++.+++.
T Consensus 86 --~l~l~~~~~gg~ 97 (172)
T 3u30_A 86 --TLHLVLRLRGGM 97 (172)
T ss_dssp --EEEEEECCCCCE
T ss_pred --eeeeeecccccc
Confidence 899999988764
No 63
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=126.04 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=66.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
.+.|.++..+|+. +.+++++++||.+||++|+++ .|+|+++|||+|+|+.|+|+.||++|+|++|+
T Consensus 96 g~~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~-------~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~------ 161 (172)
T 3u30_A 96 GMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------ 161 (172)
T ss_dssp CEEEEEEESSCCE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGCCEEETTEECCTTSBSGGGTCCTTC------
T ss_pred cccceeecccCcc-eeEEecCCCCHHHHHHHHHHH-------hCCCceeEEEEECCccCCCCCcHHHhCCCCCC------
Confidence 3556677788844 578999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEecCCcc
Q 032784 86 IMHVVVQPSLA 96 (133)
Q Consensus 86 tlhlv~~~~~~ 96 (133)
|+||++|++||
T Consensus 162 tl~l~~rlrgG 172 (172)
T 3u30_A 162 TLHLVLRLRGG 172 (172)
T ss_dssp EEEECC-----
T ss_pred EEEEEEecCCC
Confidence 99999998875
No 64
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=1.4e-17 Score=117.09 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=68.1
Q ss_pred CceEEEEEEeCCC---CeeeeEEe--------CC-cccHHHHHHHHHhcCCCCCccC--CCCCCc-eEEEecCeecCCCC
Q 032784 4 EELIDIKFRLYDG---SDIGPFRY--------SS-ASTVDMLKQRIVSDWPKGKTIV--PKAVTE-IKLISSGKILENNK 68 (133)
Q Consensus 4 ~~~i~l~~rl~~G---~~i~~~~v--------~p-~~TV~~lK~~I~~~wP~~~~~~--gi~~~~-qrLIy~Gk~L~D~~ 68 (133)
+..+.|+||..+| ..+ .++| ++ ++||.+||++|++. . ++++++ |||||+||.|+|++
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~-~l~v~~~~~~~v~~~~~TV~~LK~~i~~~-------~~~gip~~~~qrLi~~Gk~L~D~~ 81 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKS-ILQLPETELGEYSLGGYSISFLKQLIAGK-------LQESVPDPELIDLIYCGRKLKDDQ 81 (107)
T ss_dssp CCSCCEEEEETTCTTSCCE-EECCCCCSSCSSCCCCCBHHHHHHHHHHH-------CTTTCCCSSSEEEEETTEECCTTC
T ss_pred CCceEEEEEeCCCCCccEE-EEEecCccccccCcccCCHHHHHHHHHHH-------hccCCChhhcEEEEECCeECCCCC
Confidence 4568899999888 443 5784 44 49999999999999 7 999999 99999999999999
Q ss_pred ccccCCCCCCCCCCceEEEEEEecCCc
Q 032784 69 TVGQCKIPYGEVPGGVIIMHVVVQPSL 95 (133)
Q Consensus 69 tLsd~~I~~g~~~~~~~tlhlv~~~~~ 95 (133)
||++|+|.+++ +|||++++..
T Consensus 82 tL~~y~i~~g~------~i~lv~~~~~ 102 (107)
T 1x1m_A 82 TLDFYGIQPGS------TVHVLRKSWS 102 (107)
T ss_dssp BHHHHTCCTTC------EEEEEESSCC
T ss_pred cHHHcCCCCCC------EEEEEeCCCC
Confidence 99999999999 8999987764
No 65
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.72 E-value=2.8e-17 Score=118.79 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=70.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceE
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~ 85 (133)
.+.|.++..+|+. +.+++++++||.+||++|++. .++|+++|||+|+|+.|+|+.||++|+|.+|+
T Consensus 76 ~~~i~Vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~-------~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~------ 141 (152)
T 3b08_A 76 GMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------ 141 (152)
T ss_dssp CEEEEEEESSSCE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTC------
T ss_pred ccceeeeecCCCE-EEEEeCCCCcHHHHHHHHHHH-------hCcChhhEEEEECCEECCCCCCHHHcCCCCCC------
Confidence 4677788888954 578999999999999999999 89999999999999999999999999999999
Q ss_pred EEEEEecCCcc
Q 032784 86 IMHVVVQPSLA 96 (133)
Q Consensus 86 tlhlv~~~~~~ 96 (133)
++||+++++||
T Consensus 142 ~i~l~~r~~GG 152 (152)
T 3b08_A 142 TLHLVLRLRGG 152 (152)
T ss_dssp EEEEEECCCC-
T ss_pred EEEEEEecCCC
Confidence 89999999885
No 66
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=1.8e-17 Score=114.95 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=68.4
Q ss_pred CCceEEEEEEeCCCCeee-eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCC
Q 032784 3 DEELIDIKFRLYDGSDIG-PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~-~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~ 81 (133)
+++.+.|+++. .| +.+ .+++++++||.+||++|++. .|+++++|||||.||+|+|+ +|++|+|.+++
T Consensus 4 ~~~~m~i~Vk~-~g-~~~~~l~v~~~~TV~~lK~~I~~~-------tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~-- 71 (96)
T 1wgg_A 4 GSSGYSVTVKW-GK-EKFEGVELNTDEPPMVFKAQLFAL-------TGVQPARQKVMVKGGTLKDD-DWGNIKMKNGM-- 71 (96)
T ss_dssp CCCEEEEEEEE-TT-EEEEEEEEESSSCHHHHHHHHHHH-------TCCCTTTSCCEETTEECCSS-CCCSCCCCSSC--
T ss_pred CCcEEEEEEEE-CC-EEEEEEEECCCCcHHHHHHHHHHH-------HCcCHHHeEEEECCcCCCCC-CHHHCCCCCCC--
Confidence 36788999986 56 556 58999999999999999999 99999999999999999999 99999999999
Q ss_pred CceEEEEEEecCC
Q 032784 82 GGVIIMHVVVQPS 94 (133)
Q Consensus 82 ~~~~tlhlv~~~~ 94 (133)
+|||+..+.
T Consensus 72 ----~i~l~~~~~ 80 (96)
T 1wgg_A 72 ----TVLMMGSAD 80 (96)
T ss_dssp ----EEECCCCCC
T ss_pred ----EEEEEecch
Confidence 899987655
No 67
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.72 E-value=4.8e-19 Score=128.20 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=1.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.|+..+|.. +.+++++++||.+||++|++. .++|+++|||+|+|+.|+|+.||++|+|.+|+ |+
T Consensus 2 ~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gs------ti 67 (128)
T 3u5e_m 2 QIFVKTLTGKT-ITLEVESSDTIDNVKSKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------TL 67 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHHH-------hCcChHHEEEEECCEECCCCCchhhhccCCCC------EE
Confidence 57788889955 578999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCCccchh
Q 032784 88 HVVVQPSLAKTK 99 (133)
Q Consensus 88 hlv~~~~~~~~~ 99 (133)
||+++++||...
T Consensus 68 ~l~~rl~GG~~~ 79 (128)
T 3u5e_m 68 HLVLRLRGGIIE 79 (128)
T ss_dssp ---------CCC
T ss_pred EEEEEcCCCCCC
Confidence 999999998644
No 68
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.71 E-value=3.8e-17 Score=116.49 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=64.0
Q ss_pred eEEEEEEeCCC-CeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCC-CCCCCCCc
Q 032784 6 LIDIKFRLYDG-SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPGG 83 (133)
Q Consensus 6 ~i~l~~rl~~G-~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I-~~g~~~~~ 83 (133)
.+.|.|+...+ ....+++++|++||++||++|+++ +|+|+++|||||+|+.|+|++||++||| ++|+
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k-------~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~---- 92 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLD-------YGFPPVLQQWVIGQRLARDQETLHSHGVRQNGD---- 92 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEEECTTCBTGGGTCCSTTC----
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHH-------hCCCHHHEEEeccCeEccCcCcHHHcCCCCCCC----
Confidence 34555555554 245689999999999999999999 9999999999999999999999999999 5898
Q ss_pred eEEEEEEec
Q 032784 84 VIIMHVVVQ 92 (133)
Q Consensus 84 ~~tlhlv~~ 92 (133)
++||++-
T Consensus 93 --t~hL~l~ 99 (105)
T 4dbg_A 93 --SAYLYLL 99 (105)
T ss_dssp --EEEEEEC
T ss_pred --EEEEEEE
Confidence 8999874
No 69
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.71 E-value=2.5e-17 Score=112.81 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=64.4
Q ss_pred EEEEEEeC-CCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe-------cCeecCCCCccccCCCCCC
Q 032784 7 IDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-------SGKILENNKTVGQCKIPYG 78 (133)
Q Consensus 7 i~l~~rl~-~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy-------~Gk~L~D~~tLsd~~I~~g 78 (133)
|.|.|... ++....+..|++++||++||++|+.. +|+|+++||||| .|++|+|++||++|||++|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-------~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g 75 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-------FATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDE 75 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-------SCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTT
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-------HCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCC
Confidence 45555443 44456689999999999999999999 999999999997 6999999999999999999
Q ss_pred CCCCceEEEEEEecCC
Q 032784 79 EVPGGVIIMHVVVQPS 94 (133)
Q Consensus 79 ~~~~~~~tlhlv~~~~ 94 (133)
+ |+||+-+.+
T Consensus 76 ~------~ihlvd~~P 85 (86)
T 4b6w_A 76 F------VIHVVDLQP 85 (86)
T ss_dssp C------EEEEEECCC
T ss_pred C------EEEEEeCCC
Confidence 9 999997544
No 70
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.71 E-value=2.3e-17 Score=112.69 Aligned_cols=76 Identities=21% Similarity=0.146 Sum_probs=68.0
Q ss_pred CCceEEEEEEeCCCCeeeeE-EeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE---ecCeecCCCCccccCCCCCC
Q 032784 3 DEELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYG 78 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~-~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI---y~Gk~L~D~~tLsd~~I~~g 78 (133)
+++.+.|+++. .| +.+.+ ++++++||.+||++|++. .++++++|||+ |+|++|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~Vk~-~g-~~~~i~~v~~~~TV~~lK~~I~~~-------~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g 74 (90)
T 1v5t_A 4 GSSGLPIIVKW-GG-QEYSVTTLSEDDTVLDLKQFLKTL-------TGVLPERQKLLGLKVKGKPAENDVKLGALKLKPN 74 (90)
T ss_dssp CCCSCCEEEEE-TT-EEEEECSCCSSSBHHHHHHHHHHH-------TCCCTTTCEEESCEETTEECCTTSBHHHHTCCTT
T ss_pred CCceEEEEEEE-CC-EEEEEEEeCCCCCHHHHHHHHHHH-------HCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCC
Confidence 36678888886 66 45578 999999999999999999 99999999999 99999999999999999999
Q ss_pred CCCCceEEEEEEecC
Q 032784 79 EVPGGVIIMHVVVQP 93 (133)
Q Consensus 79 ~~~~~~~tlhlv~~~ 93 (133)
+ ++||+..+
T Consensus 75 ~------~l~l~~~~ 83 (90)
T 1v5t_A 75 T------KIMMMGTR 83 (90)
T ss_dssp E------EEEEECCC
T ss_pred C------EEEEEecC
Confidence 8 89998654
No 71
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=4.1e-17 Score=111.04 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=67.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCc-----ccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCC-CCccccCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSA-----STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN-NKTVGQCKIPY 77 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~-----~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D-~~tLsd~~I~~ 77 (133)
++.+.|+|+.. |. .+.++++++ +||.+||++|++. .++++++|||+|+||.|+| +.+|++|+|.+
T Consensus 5 ~~~~~v~Vk~~-~~-~~~i~v~~~~~~~~~TV~~LK~~i~~~-------~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTHS-NE-KHDLHVTSQQGSSEPVVQDLAQVVEEV-------IGVPQSFQKLIFKGKSLKEMETPLSALGIQD 75 (92)
T ss_dssp CSSEEEEEECS-SS-EEEEEECCCSSSSSCBHHHHHHHHHHH-------TCCCTTTCEEEETTEEECCSSSBHHHHTCCS
T ss_pred CCeEEEEEEEC-CE-EEEEEECCCcCcccCcHHHHHHHHHHH-------HCcCHHHEEEEECCeecCCCcccHHHCCCCC
Confidence 56788888884 53 457899995 9999999999999 9999999999999999988 66999999999
Q ss_pred CCCCCceEEEEEEecCCcc
Q 032784 78 GEVPGGVIIMHVVVQPSLA 96 (133)
Q Consensus 78 g~~~~~~~tlhlv~~~~~~ 96 (133)
|+ +|||+.++..+
T Consensus 76 g~------~i~l~~~~~~~ 88 (92)
T 1wxv_A 76 GC------RVMLIGKKNSG 88 (92)
T ss_dssp SE------EEEEESCCSCS
T ss_pred CC------EEEEEecCCCC
Confidence 98 89998765543
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.71 E-value=3.7e-17 Score=120.40 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=70.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE-e-cCeecCCCCccccCCCCCCCCCCce
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-S-SGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI-y-~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.|.+++.+|+. +.+++++++||++||++|++. .|+|+++|||+ | +|+.|+|+.||++|+|.+|+
T Consensus 3 m~i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~-------~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~----- 69 (159)
T 3rt3_B 3 WDLTVKMLAGNE-FQVSLSSSMSVSELKAQITQK-------IGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGS----- 69 (159)
T ss_dssp CEEEEEETTSCE-EEEECCTTCCHHHHHHHHHHH-------HCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTC-----
T ss_pred eEEEEEECCCCE-EEEEeCCCCcHHHHHHHHHHH-------hCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCC-----
Confidence 678899999955 478999999999999999999 99999999999 9 89999999999999999999
Q ss_pred EEEEEEecC-Cccc
Q 032784 85 IIMHVVVQP-SLAK 97 (133)
Q Consensus 85 ~tlhlv~~~-~~~~ 97 (133)
++|++++. +++.
T Consensus 70 -~l~l~~~~~~~~m 82 (159)
T 3rt3_B 70 -TVLLVVDKSDEPL 82 (159)
T ss_dssp -EEEEEECCCCCCE
T ss_pred -EEEEEccCCCCcE
Confidence 89999983 5443
No 73
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=5e-17 Score=110.06 Aligned_cols=69 Identities=23% Similarity=0.256 Sum_probs=61.6
Q ss_pred EEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEE
Q 032784 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (133)
Q Consensus 11 ~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv 90 (133)
++..+| +.+.+++++++||++||++|++. .++|+++|||+|+||.|+|+.+|++|+|.+|+ ++||+
T Consensus 16 ~~~~~g-~~~~l~v~~~~TV~~LK~~I~~~-------~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~------~l~l~ 81 (85)
T 2kd0_A 16 TVKFGG-KSIPLSVSPDCTVKDLKSQLQPI-------TNVLPRGQKLIFKGKVLVETSTLKQSDVGSGA------KLMLM 81 (85)
T ss_dssp EEEETT-EEEEEEECTTSBHHHHHHHHHHH-------HCCCTTTCEEEETTEECCTTCBTTTTTCCTTE------EEEEE
T ss_pred EEEECC-EEEEEEECCCCcHHHHHHHHHHH-------HCcChHHEEEEECCeECCCcCCHHHCCCCCCC------EEEEE
Confidence 344577 44579999999999999999999 99999999999999999999999999999998 89988
Q ss_pred ecC
Q 032784 91 VQP 93 (133)
Q Consensus 91 ~~~ 93 (133)
..+
T Consensus 82 ~s~ 84 (85)
T 2kd0_A 82 ASQ 84 (85)
T ss_dssp CCC
T ss_pred EeC
Confidence 643
No 74
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.69 E-value=1.5e-18 Score=134.93 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=3.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.|++++|. .++++|++++||.+||++|++. +|+|+++|||||+|++|+|+.||+ +++ ||
T Consensus 2 qI~VKtL~Gk-titLeV~~sdTV~~LK~kI~~k-------eGIP~~qQRLIf~GK~LeD~~TLs-----~~S------TL 62 (189)
T 2xzm_9 2 QVQVKTLEGE-TKIYTLEQGTSVLDLKSQISQD-------MGFEIDMMTLVNNGFIAPNTELVT-----DDV------TY 62 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCC-EEEEEECCcChHHHHHHHHHHH-------hCcChhHEEEEecCeECCCCCccc-----CCC------EE
Confidence 5788889995 4579999999999999999999 999999999999999999999999 666 89
Q ss_pred EEEecCCccchhhhh
Q 032784 88 HVVVQPSLAKTKTAL 102 (133)
Q Consensus 88 hlv~~~~~~~~~~~k 102 (133)
||++|++||+++++|
T Consensus 63 hLvlRLrGG~~krkK 77 (189)
T 2xzm_9 63 YLSLKLLGGKKKKKK 77 (189)
T ss_dssp ---------CCCCCC
T ss_pred EEEEecCCCcccccc
Confidence 999999999876543
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.68 E-value=1.6e-16 Score=114.80 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=69.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|+++..+|+. +.+++++++||++||++|++. .++|+++|||+|+|+.|+|+.||++|+|.+|+ ++
T Consensus 2 ~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~-------~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~------~l 67 (152)
T 3b08_A 2 QIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES------TL 67 (152)
T ss_dssp EEEEEETTSCE-EEEECCTTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEECCTTSBTGGGTCCTTC------EE
T ss_pred EEEEEeCCCCE-EEEEECCCCCHHHHHHHHHHH-------HCcChHHeEEEECCeECcCcccHHHhccCCCC------ee
Confidence 57888899955 578999999999999999999 99999999999999999999999999999999 89
Q ss_pred EEEecCCcc
Q 032784 88 HVVVQPSLA 96 (133)
Q Consensus 88 hlv~~~~~~ 96 (133)
|++.+.+++
T Consensus 68 ~l~~~~~~~ 76 (152)
T 3b08_A 68 HLVLRLRGG 76 (152)
T ss_dssp EEEECCTTC
T ss_pred EEEeecccc
Confidence 999988765
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=7.3e-17 Score=111.43 Aligned_cols=75 Identities=25% Similarity=0.246 Sum_probs=65.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
++.+.|+|+. .| +.+.+++++++||.+||++|++. .++++++|||+|.|++| |+.+|++|+|.+++
T Consensus 15 ~~~~~i~Vk~-~g-~~~~i~v~~~~TV~~LK~~I~~~-------tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~---- 80 (95)
T 1v86_A 15 KELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHSI-------TGLPPAMQKVMYKGLVP-EDKTLREIKVTSGA---- 80 (95)
T ss_dssp CCCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHHH-------HCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTE----
T ss_pred CceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHH-------HCcCHHHeEEEECCeeC-CcCcHHHCCCCCCC----
Confidence 5678888884 56 55689999999999999999999 99999999999999999 45599999999998
Q ss_pred eEEEEEEecCC
Q 032784 84 VIIMHVVVQPS 94 (133)
Q Consensus 84 ~~tlhlv~~~~ 94 (133)
+|||+..+.
T Consensus 81 --~i~lv~~~~ 89 (95)
T 1v86_A 81 --KIMVVGSTI 89 (95)
T ss_dssp --EEEECCSSC
T ss_pred --EEEEEeccc
Confidence 899986543
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.67 E-value=3.2e-16 Score=109.13 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=65.6
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec--Ce---ec-CCCCccccCCCC
Q 032784 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GK---IL-ENNKTVGQCKIP 76 (133)
Q Consensus 4 ~~~i~l~~rl~~G~-~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~--Gk---~L-~D~~tLsd~~I~ 76 (133)
++.|.|.|+...+. ...++++++++||++||++|++. +|+|+++|||+|. |+ .| +|++||++|+|+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-------~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-------TGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-------HCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCS
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-------HCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcC
Confidence 67889999886663 35689999999999999999999 9999999999998 55 44 999999999999
Q ss_pred CCCCCCceEEEEEE
Q 032784 77 YGEVPGGVIIMHVV 90 (133)
Q Consensus 77 ~g~~~~~~~tlhlv 90 (133)
+|+ |+||+
T Consensus 86 ~gs------tihlv 93 (95)
T 2kjr_A 86 DGL------RLHVV 93 (95)
T ss_dssp SSC------EEEEE
T ss_pred CCC------EEEEE
Confidence 999 89986
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=107.79 Aligned_cols=72 Identities=8% Similarity=0.055 Sum_probs=63.8
Q ss_pred ceEEEEEEeCCCCee-eeE-EeCCcccHHHHHHHHHh-cCCCCCccCCCCCCceEEEec--CeecCCCCccccCCCCCCC
Q 032784 5 ELIDIKFRLYDGSDI-GPF-RYSSASTVDMLKQRIVS-DWPKGKTIVPKAVTEIKLISS--GKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i-~~~-~v~p~~TV~~lK~~I~~-~wP~~~~~~gi~~~~qrLIy~--Gk~L~D~~tLsd~~I~~g~ 79 (133)
..+.|.|+...|+++ +.+ +++|++||++||++|++ . .++++++|||+|. |++|+|++||++|+|.+++
T Consensus 9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~-------~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~s 81 (88)
T 2dzj_A 9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTH-------PQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTA 81 (88)
T ss_dssp CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHC-------SSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEE
T ss_pred EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHh-------cCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCC
Confidence 347899999988765 357 99999999999999999 5 6899999999987 9999999999999999988
Q ss_pred CCCceEEEEE
Q 032784 80 VPGGVIIMHV 89 (133)
Q Consensus 80 ~~~~~~tlhl 89 (133)
|+|+
T Consensus 82 ------tl~~ 85 (88)
T 2dzj_A 82 ------TLYF 85 (88)
T ss_dssp ------EEEE
T ss_pred ------EEEE
Confidence 7775
No 79
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=6e-16 Score=108.26 Aligned_cols=76 Identities=12% Similarity=0.179 Sum_probs=66.2
Q ss_pred CCceEEEEEEeCCCC-eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe---e----cCCCCccccCC
Q 032784 3 DEELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK---I----LENNKTVGQCK 74 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~-~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk---~----L~D~~tLsd~~ 74 (133)
+++.|.|.|...... ...+++|++++||++||++|++. +|+|+++|||+|.|+ . ++|++||++|+
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-------~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~ 83 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-------CGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFS 83 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-------HCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHC
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-------HCcCHHHeEEEEecCCCcccceecCCcCCHHHCC
Confidence 367888888875553 24679999999999999999999 999999999999983 3 59999999999
Q ss_pred CCCCCCCCceEEEEEEe
Q 032784 75 IPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 75 I~~g~~~~~~~tlhlv~ 91 (133)
|++|+ +|||+-
T Consensus 84 I~~g~------~Ihlvd 94 (97)
T 2kj6_A 84 PFDGF------RLHIID 94 (97)
T ss_dssp CCSCC------EEEEEE
T ss_pred CCCCC------EEEEEe
Confidence 99999 899975
No 80
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.63 E-value=4.8e-16 Score=130.76 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=71.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
+..+.|+||+.+|+. +.++|++++||.+||++|+++|.. .++++++|||||+||+|+|++||++|+|.+++
T Consensus 5 ~~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~~----~gip~~~QrLiy~GK~L~D~~tL~dygI~~gs---- 75 (368)
T 1oqy_A 5 SSAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKGR----DAFPVAGQKLIYAGKILSDDVPIRDYRIDEKN---- 75 (368)
T ss_dssp -CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTCS----SSCCSTEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred CceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhCc----CCCChhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence 456889999999954 579999999999999999994211 68999999999999999999999999999998
Q ss_pred eEEEEEEecCCccc
Q 032784 84 VIIMHVVVQPSLAK 97 (133)
Q Consensus 84 ~~tlhlv~~~~~~~ 97 (133)
. ++||+.+++++.
T Consensus 76 t-Iv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 F-VVVMVTKTKAGQ 88 (368)
T ss_dssp C-EEEEEECCCSSS
T ss_pred E-EEEEEecCCCCC
Confidence 1 348888887654
No 81
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=1.8e-15 Score=104.12 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=65.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC---ee----cCCCCccccCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIP 76 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G---k~----L~D~~tLsd~~I~ 76 (133)
+..|.|.|+........++++++++||++||++|++. .|+|+++|||+|.| +. ++|++||++|+|.
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-------~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-------VGSPASCMELELYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-------TCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-------HCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence 6678888887655323578999999999999999999 99999999999987 43 5899999999999
Q ss_pred CCCCCCceEEEEEEec
Q 032784 77 YGEVPGGVIIMHVVVQ 92 (133)
Q Consensus 77 ~g~~~~~~~tlhlv~~ 92 (133)
+|+ ++||+-.
T Consensus 78 ~g~------~l~v~d~ 87 (95)
T 1v6e_A 78 DGC------RIHVIDH 87 (95)
T ss_dssp TTC------EEEEBCC
T ss_pred CCC------EEEEEEC
Confidence 999 8999753
No 82
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.61 E-value=1.3e-15 Score=125.68 Aligned_cols=77 Identities=19% Similarity=0.301 Sum_probs=69.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
...+.|.|+..+|+. ..+++++++||++||++|++. .++++++|||+|+||+|+|+.||++|+|.+++
T Consensus 231 ~~~MqI~VKtl~Gk~-~~leV~~s~TV~dLK~kI~~~-------~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gs---- 298 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDK-------EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES---- 298 (307)
T ss_dssp CCCEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHHH-------HCCCGGGCEEEETTEECCTTSBTGGGTCCTTC----
T ss_pred CCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHH-------HCcChHHEEEEeCCeecCCCCCHHHcCCCCCC----
Confidence 456789999999955 478999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCC
Q 032784 84 VIIMHVVVQPS 94 (133)
Q Consensus 84 ~~tlhlv~~~~ 94 (133)
+|||++|++
T Consensus 299 --tL~LvlRLr 307 (307)
T 3ai5_A 299 --TLHLVLRLR 307 (307)
T ss_dssp --EEEEEC---
T ss_pred --EEEEEEeCC
Confidence 899998864
No 83
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=5.6e-15 Score=102.61 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=74.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|.|+++..+|+.+ .++|.+++++..|++.++++ .++++++|||+|.|+.|++++|+++|++++++
T Consensus 5 ~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y~~~-------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 72 (94)
T 2io1_B 5 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-------QGLSMRQIRFRFDGQPINETDTPAQLEMEDED---- 72 (94)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTCCTTTTTCCTTC----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHHHHH-------hCCCcccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 5789999999999665 69999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccc
Q 032784 84 VIIMHVVVQPSLAK 97 (133)
Q Consensus 84 ~~tlhlv~~~~~~~ 97 (133)
+||++++.+||.
T Consensus 73 --~Idv~~~~~GG~ 84 (94)
T 2io1_B 73 --TIDVFQQQTGGV 84 (94)
T ss_dssp --EEEEEECCEESC
T ss_pred --EEEEEEeccCCC
Confidence 899999998874
No 84
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.57 E-value=4.9e-15 Score=104.30 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCceEEEEEEeCCCCeeeeEEeC-CcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe-----------e----cCC
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-----------I----LEN 66 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~-p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk-----------~----L~D 66 (133)
+.+.+.|+||..+|+. .++++ +++||.+||++|+++ .++++++|||+|.|+ . ++|
T Consensus 4 ~~~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI~~~-------~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d 74 (107)
T 1wf9_A 4 GSSGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLIQDQ-------LQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADP 74 (107)
T ss_dssp SCCCEEEEEECSSCEE--EEEECCTTSBHHHHHHHHHHH-------SCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCT
T ss_pred CCCeEEEEEECCCCCE--EEEECCCCCcHHHHHHHHHHH-------hCcCcccCEEEECCccccccCccccccccccCCC
Confidence 3566889999999954 47999 999999999999999 999999999999998 4 589
Q ss_pred CCccccCCCCCCCCCCceEEEEEEecC
Q 032784 67 NKTVGQCKIPYGEVPGGVIIMHVVVQP 93 (133)
Q Consensus 67 ~~tLsd~~I~~g~~~~~~~tlhlv~~~ 93 (133)
++||++|||.+|+ +|||+...
T Consensus 75 ~~tL~~~gi~~G~------~L~l~~~~ 95 (107)
T 1wf9_A 75 NLRISSLNLAHGS------MVYLAYEG 95 (107)
T ss_dssp TCBGGGTCCCTTC------EEECCCSS
T ss_pred CCCHHHCCCCCCC------EEEEEeCC
Confidence 9999999999999 89998753
No 85
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.2e-15 Score=106.13 Aligned_cols=73 Identities=15% Similarity=0.266 Sum_probs=62.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe--cCeecCCCCccccCCCCCCCCCCce
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy--~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.+++++ +|+. +++++++++||++||++|+++ +|+|+++|||+| .|+ |+|+.+|++|+|+.|+
T Consensus 10 ~~~~vk~-~Gk~-~~v~v~~~~TV~~LK~~I~~~-------tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gs----- 74 (100)
T 2dzm_A 10 LDFRVEY-RDRN-VDVVLEDTCTVGEIKQILENE-------LQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNN----- 74 (100)
T ss_dssp EEEEEEC-SSCE-EEEEEETTSBHHHHHHHHHHH-------HCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEE-----
T ss_pred EEEEEEe-CCeE-EEEEECCCCcHHHHHHHHHHH-------HCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCC-----
Confidence 3344443 6644 579999999999999999999 999999999997 676 9999999999999998
Q ss_pred EEEEEEecCCc
Q 032784 85 IIMHVVVQPSL 95 (133)
Q Consensus 85 ~tlhlv~~~~~ 95 (133)
||||++....
T Consensus 75 -tL~lvl~~~~ 84 (100)
T 2dzm_A 75 -SLYVLTPDLP 84 (100)
T ss_dssp -EEEECCSSSC
T ss_pred -EEEEEecCCC
Confidence 8999987665
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.56 E-value=1.9e-14 Score=103.55 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=63.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC---ee----cCCCCccccCCCCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIPYG 78 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G---k~----L~D~~tLsd~~I~~g 78 (133)
.|.|.|+...+....++++++++||++||++|++. .|+|+++|||+|.| +. ++|++||++|||.+|
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-------~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-------VGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-------HCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSS
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-------hCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCC
Confidence 67777777655213578999999999999999999 99999999999987 42 489999999999999
Q ss_pred CCCCceEEEEEEecC
Q 032784 79 EVPGGVIIMHVVVQP 93 (133)
Q Consensus 79 ~~~~~~~tlhlv~~~ 93 (133)
+ +|||+...
T Consensus 79 ~------~ihvvd~~ 87 (122)
T 1t0y_A 79 Y------RIHAVDVT 87 (122)
T ss_dssp E------EEEEEECT
T ss_pred C------EEEEEeCC
Confidence 8 89998743
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.55 E-value=2.8e-14 Score=98.68 Aligned_cols=83 Identities=17% Similarity=0.236 Sum_probs=74.5
Q ss_pred CCCCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCC
Q 032784 1 MPDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (133)
Q Consensus 1 ~~~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~ 80 (133)
|+ .+.|.|+++..+|+.+ .+.|.+++++..|++..+++ .|++++++||+|.|+.|.+++|+++|++.+|+
T Consensus 1 ~~-~~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y~~~-------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD- 70 (91)
T 2io0_B 1 MA-NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-------QGLSMRQIRFRFDGQPINETDTPAQLEMEDED- 70 (91)
T ss_dssp ----CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHH-------TTCCSTTEEEEETTEECCTTCCTTTTTCCTTE-
T ss_pred CC-CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-------hCCCcccEEEEECCEEcCCCCCHHHcCCCCCC-
Confidence 44 3679999999999665 69999999999999999999 99999999999999999999999999999999
Q ss_pred CCceEEEEEEecCCccch
Q 032784 81 PGGVIIMHVVVQPSLAKT 98 (133)
Q Consensus 81 ~~~~~tlhlv~~~~~~~~ 98 (133)
+||++++..||.-
T Consensus 71 -----~Idv~~~q~gg~~ 83 (91)
T 2io0_B 71 -----TIDVFQQQTGGVY 83 (91)
T ss_dssp -----EEEEEECCCCCCC
T ss_pred -----EEEEEEeccCCcc
Confidence 8999999888753
No 88
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.49 E-value=1.1e-13 Score=95.65 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=71.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|.|+++..+|..+ .+.|.+++++..|++.++++ .|++++++||+|.|+.|.++.|+++|++.+|+
T Consensus 15 ~~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y~~~-------~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD---- 82 (93)
T 2d07_B 15 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-------QGLSMRQIRFRFDGQPINETDTPAQLEMEDED---- 82 (93)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEE-EEEEccCCHHHHHHHHHHHH-------hCCCccceEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 4688999998899665 69999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
+||++++..||
T Consensus 83 --~Idv~~~q~GG 93 (93)
T 2d07_B 83 --TIDVFQQQTGG 93 (93)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEeeccCC
Confidence 89999988775
No 89
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.49 E-value=4.2e-14 Score=116.69 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=66.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE---ecCeecCCCCccccCCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYGEV 80 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI---y~Gk~L~D~~tLsd~~I~~g~~ 80 (133)
++.|.|+|+. +| +.+.+++++++||++||++|++. .|+|+++|||| |+|++|+|+.+|++|+|++|+
T Consensus 3 ~~~i~i~Vk~-~g-~~~~v~v~~~~Tv~~lK~~I~~~-------tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~- 72 (320)
T 3shq_A 3 VKEVVVIVKW-SG-KEYPVDLTDQDTVEVLRHEIFRK-------TQVRPERQKLLNLKYKGKTAADNVKISALELKPNF- 72 (320)
T ss_dssp -CEEEEEEEE-TT-EEEEEEEETTSBHHHHHHHHHHH-------HCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--C-
T ss_pred CceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHH-------HCcCHHHeEEeecccCCcccCccccHHHcCCCCCC-
Confidence 5678889986 56 45679999999999999999999 99999999999 899999999999999999999
Q ss_pred CCceEEEEEEecCCc
Q 032784 81 PGGVIIMHVVVQPSL 95 (133)
Q Consensus 81 ~~~~~tlhlv~~~~~ 95 (133)
++||+-.+..
T Consensus 73 -----~l~L~gs~~~ 82 (320)
T 3shq_A 73 -----KLMMVGSTEA 82 (320)
T ss_dssp -----EEEEECCCC-
T ss_pred -----EEEEEccchh
Confidence 8999865543
No 90
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.6e-13 Score=97.09 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=74.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|.|+++..+|..+ .+.|.+++++..|++.++++ .+++++++||+|.|+.|.+++|+++|++.+++
T Consensus 22 ~~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y~ek-------~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD---- 89 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-------QGLSMRQIRFRFDGQPINETDTPAQLEMEDED---- 89 (104)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSCHHHHHHHHHHH-------HTCCTTTSCEESSSSBCCTTSCTTTTTCCTTE----
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCChHHHHHHHHHHH-------hCCCcceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 4689999999999665 69999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccc
Q 032784 84 VIIMHVVVQPSLAK 97 (133)
Q Consensus 84 ~~tlhlv~~~~~~~ 97 (133)
+||++++..||.
T Consensus 90 --~Idv~~~q~GG~ 101 (104)
T 1wz0_A 90 --TIDVFQQQTSGP 101 (104)
T ss_dssp --EEEECCCCCCCS
T ss_pred --EEEEEEeccCCC
Confidence 899999988874
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.46 E-value=8.2e-14 Score=94.05 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=61.7
Q ss_pred EEEEEeCCCCeeeeEE-eCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec--CeecC---CCCccccCCCCCCCCC
Q 032784 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GKILE---NNKTVGQCKIPYGEVP 81 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~-v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~--Gk~L~---D~~tLsd~~I~~g~~~ 81 (133)
.|+||+.+|+.+ ++ +++++||.+||++|+++ .|+++++|||+|+ ||.|+ |+.||++|||.+|+
T Consensus 2 ~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~-------~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~-- 70 (86)
T 2kzr_A 2 RVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAI-------TGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGD-- 70 (86)
T ss_dssp CEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHH-------TCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTC--
T ss_pred EEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHH-------hCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCC--
Confidence 589999999543 56 99999999999999999 9999999999997 48884 78999999999999
Q ss_pred CceEEEEEEec
Q 032784 82 GGVIIMHVVVQ 92 (133)
Q Consensus 82 ~~~~tlhlv~~ 92 (133)
++|+.-.
T Consensus 71 ----~l~v~~~ 77 (86)
T 2kzr_A 71 ----MLIVEED 77 (86)
T ss_dssp ----EEECCCC
T ss_pred ----EEEEEeC
Confidence 8898754
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.44 E-value=4.6e-13 Score=88.08 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=65.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEE
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~t 86 (133)
|+|+++..+|+.+ .+.+.+++++..|++..+++ .|++++++||+|.|+.|.+++|.++|++.+|+ +
T Consensus 2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y~~~-------~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD------~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCER-------QGLSMRQIRFRFDGQPINETDTPAQLEMEDED------T 67 (72)
T ss_dssp EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHHH-------HTCCTTTCEEEETTEECCTTCCTTTTTCCTTE------E
T ss_pred EEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-------hCCCcceEEEEECCEEcCCCCCHHHcCCCCCC------E
Confidence 7889998999665 69999999999999999999 99999999999999999999999999999999 7
Q ss_pred EEEE
Q 032784 87 MHVV 90 (133)
Q Consensus 87 lhlv 90 (133)
+|+.
T Consensus 68 Idv~ 71 (72)
T 1wm3_A 68 IDVF 71 (72)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.41 E-value=8.5e-13 Score=93.92 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=70.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|+|+++. +|..+ .+.|.+++++..|++..+++ .|++++++||+|.|+.|.+++|.++|++.+|+
T Consensus 29 ~~~I~IkV~~-~g~~i-~fkIk~tt~l~kL~~ay~ek-------~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD---- 95 (106)
T 2eke_C 29 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKR-------QGKEMDSLRFLYDGIRIQADQTPEDLDMEDND---- 95 (106)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHH-------HTCCGGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEec-CCcEE-EEEeCCCCHHHHHHHHHHHH-------hCCCcccEEEEECCeEcCCCCCHHHcCCCCCC----
Confidence 4579999999 89665 69999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
+||++++..||
T Consensus 96 --~Idv~~~q~GG 106 (106)
T 2eke_C 96 --IIEAHREQIGG 106 (106)
T ss_dssp --EEEEEECC---
T ss_pred --EEEEEeecccC
Confidence 89999988764
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.41 E-value=3.8e-13 Score=96.24 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=73.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|.|+++..+|..+ .+.|.+++++..|++..+++ .++++++|||+|.|+.|.+++|+++|++.+++
T Consensus 24 ~~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay~ek-------~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD---- 91 (110)
T 2k8h_A 24 TALVAVKVVNADGAEM-FFRIKSRTALKKLIDTYCKK-------QGISRNSVRFLFDGTPIDETKTPEELGMEDDD---- 91 (110)
T ss_dssp CCCEEEEEEETTSCCE-EEEECTTSSHHHHHHHHHHH-------HTCCSSSCEEESSSCBCCSSSHHHHHHCSSEE----
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHH-------hCCCcccEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 3579999999999765 69999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
+||++++..+|
T Consensus 92 --~Idv~~~q~Gg 102 (110)
T 2k8h_A 92 --VIDAMVEQTGG 102 (110)
T ss_dssp --EEEEECCCCCC
T ss_pred --EEEEEEcccCc
Confidence 89999988876
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.41 E-value=1.1e-12 Score=87.90 Aligned_cols=73 Identities=10% Similarity=0.167 Sum_probs=68.0
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCC
Q 032784 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (133)
Q Consensus 4 ~~~i~l~~rl~~G~-~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~ 82 (133)
.+.|.|+++..+|+ .+ .+.+.+++++..|++..+++ .|++++++||+|.|+.|.+++|+++|++.+|+
T Consensus 5 ~~~i~ikV~~~~g~~~i-~~~i~~~t~l~kl~~~y~~~-------~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD--- 73 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQML-EISLSPDSPLKVLMSHYEEA-------MGLSGHKLSFFFDGTKLSGKELPADLGLESGD--- 73 (79)
T ss_dssp CCCEEEEEECSSTTCEE-EEEECTTSCHHHHHHHHHHH-------HTCTTCCCEEEETTEECCSCCCHHHHTCCTTC---
T ss_pred CCEEEEEEEeCCCCEEE-EEEECCCChHHHHHHHHHHH-------hCCCcccEEEEECCEEcCCCCCHHHcCCCCCC---
Confidence 67899999999996 45 68999999999999999999 99999999999999999999999999999999
Q ss_pred ceEEEEEE
Q 032784 83 GVIIMHVV 90 (133)
Q Consensus 83 ~~~tlhlv 90 (133)
+||+.
T Consensus 74 ---~Idv~ 78 (79)
T 3a4r_A 74 ---LIEVW 78 (79)
T ss_dssp ---EEEEE
T ss_pred ---EEEEe
Confidence 78874
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=5.3e-11 Score=81.77 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=63.8
Q ss_pred CceEEEEEEeC---CCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC------ee-c-CCCCcccc
Q 032784 4 EELIDIKFRLY---DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG------KI-L-ENNKTVGQ 72 (133)
Q Consensus 4 ~~~i~l~~rl~---~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G------k~-L-~D~~tLsd 72 (133)
..-|.|+|+.. +| +..+..+.+++||.+||++|+.. .|+|++.|||.|.+ .. | +|+++|+.
T Consensus 7 ~~~v~l~I~~~~~~~~-~~~e~~l~~~~TV~~LK~~i~~~-------~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~ 78 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPER-QILEKQLPDSMTVQKVKGLLSRL-------LKVPVSELLLSYESSKMPGREIELENDLQPLQF 78 (97)
T ss_dssp SCEEEEEEEESSCSSS-CCEEEEEETTSBHHHHHHHHHTT-------TTCCTTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred CccEEEEEEecCCCCC-cEEEEECCCCCCHHHHHHHHHHH-------HCCChhHeEEEEEcCCCCceeeccCCCcccHhh
Confidence 44578888763 55 55678999999999999999999 99999999999873 22 5 78899999
Q ss_pred CCCCCCCCCCceEEEEEEecC
Q 032784 73 CKIPYGEVPGGVIIMHVVVQP 93 (133)
Q Consensus 73 ~~I~~g~~~~~~~tlhlv~~~ 93 (133)
|+|.+|+ +||+....
T Consensus 79 y~i~~G~------~I~V~d~~ 93 (97)
T 1wjn_A 79 YSVENGD------CLLVRWSG 93 (97)
T ss_dssp GTCCTTC------EEEEECCS
T ss_pred cCCCCCC------EEEEEecC
Confidence 9999999 89998744
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=9.1e-10 Score=79.43 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=69.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCce
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~ 84 (133)
+.|+|+++..+|..+ .+.|.+++++..|++..+++ .|++++++||+|.|+.|.++.|.+++++.+|+
T Consensus 39 ~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY~er-------~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD----- 105 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQR-------QGVPMNSLRFLFEGQRIADNHTPKELGMEEED----- 105 (115)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHH-------HTCCTTSEEEEETTEECCTTCCTTTTTCCTTC-----
T ss_pred CeEEEEEEcCCCCEE-EEEEccCChHHHHHHHHHHH-------hCCChhhEEEEECCeECCCCCCHHHcCCCCCC-----
Confidence 578899988899775 68999999999999999999 99999999999999999999999999999999
Q ss_pred EEEEEEecCC
Q 032784 85 IIMHVVVQPS 94 (133)
Q Consensus 85 ~tlhlv~~~~ 94 (133)
+|+++++-.
T Consensus 106 -~IdV~~~Q~ 114 (115)
T 3kyd_D 106 -VIEVYQEQC 114 (115)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEeecc
Confidence 888887543
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.02 E-value=9.9e-10 Score=85.82 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=73.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|+|+++ .+|..+ .+.|.+++++..|++..+++ .|++++++||+|.|+.|.+++|.+++++.+|+
T Consensus 27 ~~~I~LkV~-~~g~~v-~fkIk~~t~l~kL~~ay~er-------~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD---- 93 (200)
T 3pge_A 27 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKR-------QGKEMDSLRFLYDGIRIQADQTPEDLDMEDND---- 93 (200)
T ss_dssp CCCEEEEEE-CSSCEE-EEEECTTSCTHHHHHHHHHH-------HSSCGGGEEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCeEEEEEe-cCCCEE-EEEEecCCHHHHHHHHHHHH-------hCCChhhEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 456889997 477554 79999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccchhh
Q 032784 84 VIIMHVVVQPSLAKTKT 100 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~~~ 100 (133)
+||++++..++.+..
T Consensus 94 --~Idv~~~q~gg~kd~ 108 (200)
T 3pge_A 94 --IIEAHREQIGGGGET 108 (200)
T ss_dssp --EEEEEECCSCCC-CC
T ss_pred --EEEEEeccCcCcCce
Confidence 899999999887653
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.5e-09 Score=82.97 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=73.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|+|+++ .+|..+ .+.|.+++++..|++..+++ .|++++++||+|.|+.|.+++|.+++++.+|+
T Consensus 55 ~e~InLKVk-~dG~eV-~FKIKrtTpL~KLmeAYcER-------qGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGD---- 121 (207)
T 3tix_A 55 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKR-------QGKEMDSLTFLYDGIEIQADQTPEDLDMEDND---- 121 (207)
T ss_dssp CCEEEEEEE-CSSCEE-EEEEETTSCTHHHHHHHHHH-------TTCCGGGSCEEETTEECCSSCCTTTTTCCTTE----
T ss_pred CCcEEEEEe-cCCCEE-EEEEccCChHHHHHHHHHHH-------hCCCcccEEEEECCeecCCCCCHHHcCCCCCC----
Confidence 456889997 478655 69999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccchh
Q 032784 84 VIIMHVVVQPSLAKTK 99 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~~ 99 (133)
+|+++++..||...
T Consensus 122 --tIDV~leQ~GG~~~ 135 (207)
T 3tix_A 122 --IIEAHREQIGGLPS 135 (207)
T ss_dssp --EEEECCCCCTTGGG
T ss_pred --EEEEEEeccCCCcc
Confidence 89999999988664
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.64 E-value=3.2e-09 Score=84.18 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=5.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|+|++ ..+|..+ .+.|.+++.+..|++..+++ .|++++++|++|.|+.|.+++|.+++++++|+
T Consensus 19 ~e~InLKV-~qdGseV-~FKIKrtTpL~KLM~AYcER-------qGLs~~siRFLFDGqRI~dddTPadL~MEDGD---- 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEI-FFKIKKTTPLRRLMEAFAKR-------QGKEMDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEE-EEEEccCChHHHHHHHHHHH-------hCCCccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence 56788888 6688555 69999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccchhhhhhhhh
Q 032784 84 VIIMHVVVQPSLAKTKTALKVDA 106 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~~~~k~~~~ 106 (133)
+|+++++..||....-...+|
T Consensus 86 --tIDV~leQ~GG~~~~~l~~~a 106 (227)
T 3v7o_A 86 --IIEAHREQIGGLTLAVLLQIA 106 (227)
T ss_dssp ------------CCCHHHHHHHH
T ss_pred --EEEEEecccCCchHhHHHHHH
Confidence 899999999987654344433
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.58 E-value=1.5e-07 Score=65.74 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=45.0
Q ss_pred EEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecC--CCCccccCC
Q 032784 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE--NNKTVGQCK 74 (133)
Q Consensus 11 ~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~--D~~tLsd~~ 74 (133)
|.+..+ ....+.+.|++||..+|++|+++ +||++++|+|||.|+.|. .+..-..|-
T Consensus 18 f~~~~a-~~h~v~I~~~etv~~~ke~V~eq-------TgIp~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 18 FSLQQM-TAHKIYIHSYNTATIFHELVYKQ-------TKIISSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp EETTTT-EEEEEEEETTCBHHHHHHHHHHH-------HCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred EEcccc-eEEEEEeccchHHHHHHHHHHHH-------hCCCHHHHHHHhCCCccccCCCCccccCC
Confidence 334455 67789999999999999999999 999999999999998764 444444443
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.50 E-value=6.2e-08 Score=65.02 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=53.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCee-----cCCCCccccCCCCCCC
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-----LENNKTVGQCKIPYGE 79 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~-----L~D~~tLsd~~I~~g~ 79 (133)
+-||||..+|... +++++++|+.+|+++|++. .+++++.|.|.++-.. +.++.+|+++||..|+
T Consensus 5 m~lRvrs~~G~~R--i~v~~~~t~~~L~~~I~~~-------~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd 73 (80)
T 2pjh_A 5 IIIRVQSPDGVKR--ITATKRETAATFLKKVAKE-------FGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGD 73 (80)
T ss_dssp CCCEEECSSEEEE--CCCCSSCCHHHHHHHHHHH-------TCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred EEEEEECCCCCEE--EEcCCcChHHHHHHHHHHH-------cCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence 6789999999654 5799999999999999999 8888888777555444 4578899999999999
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-06 Score=61.02 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=62.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+.|+|+++-.+|.....+.+.++++...|.+..+++ .+++++..|++|.|+.|..+.|.+++++.+|+
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~-------~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEA-------MGLSGRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHH-------TTCSSSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHH-------HCCCcccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 5788899988888533368999999999999999999 89999999999999999999999999999999
No 104
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.39 E-value=3.8e-08 Score=82.73 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=2.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|+|+++. +|.. ..+.+.++++...|++..+++ .|++++++|++|.|+.|.+++|.+++++++|+
T Consensus 19 ~~~I~LKV~~-~g~~-v~FkIk~~t~l~kLm~aY~~r-------~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD---- 85 (360)
T 3ix6_A 19 ETHINLKVSD-GSSE-IFFKIKKTTPLRRLMEAFAKR-------QGKEMDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcE-EEEEEecCChHHHHHHHHHHH-------hCCCcceEEEEECCeECCCCCChHHcCCCccc----
Confidence 5678888875 5644 468999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccchh
Q 032784 84 VIIMHVVVQPSLAKTK 99 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~~ 99 (133)
+|+++.+..||++.
T Consensus 86 --~Idv~~~Q~g~~~~ 99 (360)
T 3ix6_A 86 --IIEAHREQIGGMRT 99 (360)
T ss_dssp -------------CHH
T ss_pred --hhhhhhccCchHHH
Confidence 89999999998875
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.36 E-value=1.4e-06 Score=67.48 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=68.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|+|+++. +|..+ .+.+..+++...|++..+++ .|++++++||+|.|+.+.+++|..++++.+++
T Consensus 19 ~~~i~ikv~~-~~~~v-~~~i~~~~~l~kl~~~y~~~-------~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d---- 85 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKR-------QGKEMDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (209)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHH-------HTCCGGGCEEEETTEECCTTCCTTTTTCCTTE----
T ss_pred CCcEEEEEEc-CCCEE-EEEEeeCCHHHHHHHHHHHh-------hCCChheEEEEECCEeccCCCChHHhhhcccc----
Confidence 5678888876 66554 68999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCcc
Q 032784 84 VIIMHVVVQPSLA 96 (133)
Q Consensus 84 ~~tlhlv~~~~~~ 96 (133)
++++..+..++
T Consensus 86 --~I~~~~eq~Gg 96 (209)
T 3uf8_A 86 --IIEAHREQIGG 96 (209)
T ss_dssp --EEEEECSCTTC
T ss_pred --cchhhcccccc
Confidence 67777766664
No 106
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.33 E-value=5e-06 Score=56.57 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=58.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCC-ceEEEecCeecCCCCccccCCCCCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~-~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.|.+-+|-....++ .+.+.++++|.+|-..-.++ .+|+++ .+||.|-|..|+.++|+.||.+.+++
T Consensus 9 ~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ayc~~-------~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D 75 (82)
T 3goe_A 9 LITLLLRSSKSEDL-RLSIPVDFTVKDLIKRYCTE-------VKISFHERIRLEFEGEWLDPNDQVQSTELEDED 75 (82)
T ss_dssp EEEEEEEESSSCCE-EEEEETTSBHHHHHHHHHHH-------HTCCCCTTCEEEETTEECCTTSBGGGSSCCTTC
T ss_pred HHHHhhhccCCCCe-EEEecCCCCHHHHHHHHHHH-------cCCCcCceEEEEEcCcccCccCChhhhCCcCCc
Confidence 46677777655576 58999999999999888888 899999 99999999999999999999999999
No 107
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.08 E-value=4.5e-07 Score=75.30 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.+.|+|+++. +|..+ .+.+..+++...|++..+++ .|++++++|++|.|+.|.+++|.+++++.+|+
T Consensus 28 ~~~i~lkv~~-~~~~~-~~~i~~~~~~~~l~~~y~~~-------~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d---- 94 (389)
T 4da1_A 28 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKR-------QGKEMDSLRFLYDGIRIQADQAPEDLDMEDND---- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEE-EEEECCCChHHHHHHHHHHH-------hCCCcceEEEEECCEEcCCCCCHHHcCCCCCC----
Confidence 4578888876 56444 68999999999999999999 99999999999999999999999999999999
Q ss_pred eEEEEEEecCCccchh
Q 032784 84 VIIMHVVVQPSLAKTK 99 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~~ 99 (133)
+|++++...++..-
T Consensus 95 --~i~~~~~q~gg~n~ 108 (389)
T 4da1_A 95 --IIEAHREQIGGENL 108 (389)
T ss_dssp ----------------
T ss_pred --Eeeeeecccccccc
Confidence 78888877776543
No 108
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.99 E-value=4e-05 Score=53.53 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=60.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+.|+|+++- +|.. .-|.+..++....|.+..+++ .|.+++++|++|.|..+.++.|-+++++.+++
T Consensus 19 ~~~IniKV~~-~g~e-v~FkIK~tt~l~KL~~aYc~r-------~gv~~~sirFlfDG~rI~~~~TP~~L~meD~D 85 (95)
T 2l76_A 19 PRLFPLKIRC-RADL-VRLPLRMSEPLQSVVDHMATH-------LGVSPSRILLLFGETELSPTATPRTLKLGVAD 85 (95)
T ss_dssp CCCEEEEEEC-SSSE-EEEEECSSSCTHHHHHHHHHH-------HTSCGGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred CCeEEEEEEc-CCcE-EEEEEecCChHHHHHHHHHhh-------cCCChhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence 5568999984 5534 468999999999999999999 99999999999999999999999999999999
No 109
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.97 E-value=5.5e-05 Score=50.40 Aligned_cols=68 Identities=18% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeec---CCCCccccCCCCC
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPY 77 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L---~D~~tLsd~~I~~ 77 (133)
++....|+||+.+|+.+ .-.|..++||.+|.+.|... +.+....+|+ |-.|.| +.++||.++|+..
T Consensus 4 ~~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~~--------~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p 74 (84)
T 3qx1_A 4 MEPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVASK--------GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP 74 (84)
T ss_dssp CCCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHT--------TCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred CCCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHc--------CCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence 36778999999999765 56999999999999999876 3467778888 446878 4578999999987
Q ss_pred CC
Q 032784 78 GE 79 (133)
Q Consensus 78 g~ 79 (133)
+.
T Consensus 75 ~a 76 (84)
T 3qx1_A 75 QE 76 (84)
T ss_dssp EE
T ss_pred CC
Confidence 66
No 110
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.66 E-value=4.2e-05 Score=55.87 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=52.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCC----------------------------------
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT---------------------------------- 53 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~---------------------------------- 53 (133)
.|+|++++| .+..+.|+.+.+|.+++..|..+ .|++..
T Consensus 13 ~LkV~llDg-~~ktl~VD~S~~V~~lv~~Ic~k-------igI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 84 (128)
T 2kc2_A 13 PLKIRMLDG-TVKTIMVDDSKTVTDMLMTICAR-------IGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKM 84 (128)
T ss_dssp EEEEECTTS-CEEEEEEEECSSHHHHHHHHHHH-------HTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCS
T ss_pred cEEEEcCCC-CEEEEEeCCCcCHHHHHHHHHHH-------hCCCCcccccccccccccccccCchhhccccccccchhHH
Confidence 589999999 66789999999999999999998 555533
Q ss_pred ---ceEEEe--cCeecCCCCccccCCCCCCC
Q 032784 54 ---EIKLIS--SGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 54 ---~qrLIy--~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+||-. .+..|++++||.++||.+++
T Consensus 85 ~~~k~kL~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 85 EKLKQKLHTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp CSSCCSCCCSSSEEEECSSSCHHHHTCCTTS
T ss_pred HHHHHHhcccCCCCcccCCCcHHHcCCCCCC
Confidence 455522 34788999999999999999
No 111
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.65 E-value=0.00014 Score=49.20 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=55.4
Q ss_pred eEEEEEEe--CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 6 LIDIKFRL--YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 6 ~i~l~~rl--~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
-|+|++.+ ..| +.+.+.++-..||.+|++.+.+..-- +.....--++|....|.+|.++++|+||+|.+|+
T Consensus 4 yI~ITidl~~y~~-~~~DLRIP~~~tvK~Li~~l~ea~~l--~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 4 YIDITIDLKHYNG-SVFDLRLSDYHPVKKVIDIAWQAQSV--SMPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp EEEEEEECTTTTC-CEEEEEEETTSBTTHHHHHHHHHSCC--CSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred EEEEEEEeeccCC-ceEEEECCCchhHHHHHHHHHHHhCC--CcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 46677776 466 56799999999999999999998211 1111111478999999999999999999999999
No 112
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.59 E-value=0.00038 Score=48.83 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=54.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe--cCeecC---CCCccccCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILE---NNKTVGQCKIPYG 78 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy--~Gk~L~---D~~tLsd~~I~~g 78 (133)
.....|.||+.+|..+ .-.|..++||.+|.+-|... .+.+.....|+- -.|.|. .++||.|+|+...
T Consensus 11 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~-------~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 11 STIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQT-------VGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPS 82 (109)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHHH-------HTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhc-------cCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence 4578999999999655 57999999999999999988 445556677764 467775 3689999999866
Q ss_pred C
Q 032784 79 E 79 (133)
Q Consensus 79 ~ 79 (133)
.
T Consensus 83 a 83 (109)
T 2dzk_A 83 A 83 (109)
T ss_dssp E
T ss_pred e
Confidence 5
No 113
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.36 E-value=0.00071 Score=48.57 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=53.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE--ecCeec--C-CCCccccCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL--E-NNKTVGQCKIPYG 78 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI--y~Gk~L--~-D~~tLsd~~I~~g 78 (133)
...+.|+||+.+|..+ .-.|..++||.+|.+-|... +.+.....|+ |-.|.| + .++||.++|+...
T Consensus 41 ~~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~~--------~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~ps 111 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQSK--------GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQ 111 (124)
T ss_dssp SCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHH--------HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSS
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhc--------CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCc
Confidence 5689999999999654 57999999999999999776 3455667776 457888 3 3789999999865
Q ss_pred C
Q 032784 79 E 79 (133)
Q Consensus 79 ~ 79 (133)
.
T Consensus 112 a 112 (124)
T 1wj4_A 112 E 112 (124)
T ss_dssp B
T ss_pred e
Confidence 5
No 114
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.21 E-value=0.001 Score=47.77 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=53.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe--cCeecCC-CCccccCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILEN-NKTVGQCKIPYG 78 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy--~Gk~L~D-~~tLsd~~I~~g 78 (133)
.....|+||+.+|..+ .-.|..++||.+|.+-|....| +.......|+. -.|.|+| ++||.|+|+...
T Consensus 50 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~------~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARP------AMAATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp SCCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHHHCS------GGGTSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHhCc------CCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 4578999999999665 6799999999999999998722 23456677764 5778864 689999999853
No 115
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.20 E-value=0.0013 Score=45.86 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=53.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe--cCeecC--CCCccccCCCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILE--NNKTVGQCKIPYGE 79 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy--~Gk~L~--D~~tLsd~~I~~g~ 79 (133)
...+.|.||+.+|+.+ .-.|..++||.+|.+-|... +......+|+. =.|.|. .+.||+++||....
T Consensus 21 ~~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~~--------~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a 91 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKV--------GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDT 91 (109)
T ss_dssp SSEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHH--------TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhc--------CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCe
Confidence 3579999999999665 56999999999999999976 34566777864 477785 46899999998765
No 116
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=97.12 E-value=0.0048 Score=44.98 Aligned_cols=70 Identities=20% Similarity=0.247 Sum_probs=48.3
Q ss_pred eeeeEEeCCcccHHHHHHHHHhcCCCCCc-cCCCCCCceEEEe-cC---e-ecCCC-------------CccccCCCCCC
Q 032784 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS-SG---K-ILENN-------------KTVGQCKIPYG 78 (133)
Q Consensus 18 ~i~~~~v~p~~TV~~lK~~I~~~wP~~~~-~~gi~~~~qrLIy-~G---k-~L~D~-------------~tLsd~~I~~g 78 (133)
..+++.+-.++||.++|++|.+..=++.+ -....++++.|=+ .| + +|.|. .||+.|+|++|
T Consensus 17 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg 96 (127)
T 3h6n_A 17 DSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG 96 (127)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT
T ss_pred CceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC
Confidence 34577888999999999999876422211 1234578888876 34 3 36652 37889999999
Q ss_pred CCCCceEEEEEEecC
Q 032784 79 EVPGGVIIMHVVVQP 93 (133)
Q Consensus 79 ~~~~~~~tlhlv~~~ 93 (133)
. ||-|+.+.
T Consensus 97 a------tv~l~~~~ 105 (127)
T 3h6n_A 97 A------SLAMSLID 105 (127)
T ss_dssp C------EEEEEECC
T ss_pred C------EEEEEEcc
Confidence 9 77777543
No 117
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.11 E-value=0.0029 Score=51.76 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=54.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe------cCeecCCCCccccCCCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPYG 78 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy------~Gk~L~D~~tLsd~~I~~g 78 (133)
..++|+|++. + .+..+.|+|++||.++..+|.++.|.. ...+.++--|.- .|+-|++++||+.|++.++
T Consensus 2 ~~~~~~~~~~-~-~~~~~~f~~~~~v~~~~~~i~e~~~~~---~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~ 76 (371)
T 3ivf_A 2 VALSLKISIG-N-VVKTMQFEPSTMVYDACRMIRERIPEA---LAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNG 76 (371)
T ss_dssp CCEEEEEEET-T-EEEEEEECTTCBHHHHHHHHHTTCGGG---GSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTT
T ss_pred ccEEEEEEec-c-eeEEEEECCCCCHHHHHHHHHHhcccc---cCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCC
Confidence 4688999998 4 667899999999999999999997642 022344444533 3677999999999999998
Q ss_pred C
Q 032784 79 E 79 (133)
Q Consensus 79 ~ 79 (133)
+
T Consensus 77 ~ 77 (371)
T 3ivf_A 77 D 77 (371)
T ss_dssp C
T ss_pred c
Confidence 7
No 118
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.72 E-value=0.011 Score=42.05 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=50.3
Q ss_pred eEEEEEEeCC-CCeeeeEEeCCcccHHHHHHHHHhcCCCCCc-cCCCCCCceEEEe----cCeecCCC------------
Q 032784 6 LIDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS----SGKILENN------------ 67 (133)
Q Consensus 6 ~i~l~~rl~~-G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~-~~gi~~~~qrLIy----~Gk~L~D~------------ 67 (133)
.+.|++.... +.+.+++.+-.++||.++|++|.+..=++.+ -.-..++++.|=+ .|++|.|.
T Consensus 11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr 90 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR 90 (111)
T ss_dssp EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence 3455554432 2234577888999999999999877422211 1112467888866 35677662
Q ss_pred -CccccCCCCCCCCCCceEEEEEEe
Q 032784 68 -KTVGQCKIPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 68 -~tLsd~~I~~g~~~~~~~tlhlv~ 91 (133)
.||+.|+|++|. ||-|+.
T Consensus 91 LNTL~HY~V~dga------tl~l~~ 109 (111)
T 4e71_A 91 VNTLMHYNVRDGA------TLILSK 109 (111)
T ss_dssp CCBHHHHTCCTTC------EEEEEE
T ss_pred ecchhhcCCCCCC------EEEEEe
Confidence 278899999998 676653
No 119
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.71 E-value=0.0068 Score=41.74 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=63.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tl 87 (133)
.|.+...+|.. ..+.+.|++++.+|=+...++ .++++++-.|.|++|.|+=+.+++-.||++|. .+
T Consensus 11 ~v~Vl~~n~rr-~~VKvtp~t~L~~VL~eaC~K-------~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnA------kL 76 (90)
T 2al3_A 11 AVSVLAPNGRR-HTVKVTPSTVLLQVLEDTCRR-------QDFNPSEYDLKFQRTVLDLSLQWRFANLPNNA------KL 76 (90)
T ss_dssp CEEEECTTSCE-EEECCCTTSBHHHHHHHHHHH-------TTCCGGGCEEEETTEEESSSCBHHHHCCCSSC------EE
T ss_pred EEEEEcCCCcE-EEEEECCCCCHHHHHHHHHHH-------hCCChhhCeEEeCCEeccccceeEecCCCCCC------EE
Confidence 78888889954 478999999999998888888 89999999999999999999999999999999 67
Q ss_pred EEEec
Q 032784 88 HVVVQ 92 (133)
Q Consensus 88 hlv~~ 92 (133)
-|+..
T Consensus 77 ELv~~ 81 (90)
T 2al3_A 77 EMVPV 81 (90)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 77753
No 120
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.31 E-value=0.024 Score=41.77 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=52.1
Q ss_pred eEEEEEEeCCC-----CeeeeEEeCCcccHHHHHHHHHhcCCCCCc-cCCCCCCceEEEe----cCe-ecCCC-------
Q 032784 6 LIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS----SGK-ILENN------- 67 (133)
Q Consensus 6 ~i~l~~rl~~G-----~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~-~~gi~~~~qrLIy----~Gk-~L~D~------- 67 (133)
.+.|.+....| .+-+++.|=.++||.++|++|.+..=++.+ ..-+.+++.-|=+ +|+ +|.|.
T Consensus 24 ~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~ 103 (138)
T 2r2o_A 24 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ 103 (138)
T ss_dssp EEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred EEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccccc
Confidence 45555544422 244578999999999999999876322211 1123566777755 344 37664
Q ss_pred ------CccccCCCCCCCCCCceEEEEEEec
Q 032784 68 ------KTVGQCKIPYGEVPGGVIIMHVVVQ 92 (133)
Q Consensus 68 ------~tLsd~~I~~g~~~~~~~tlhlv~~ 92 (133)
.||+.|+|++|. +|-|+.+
T Consensus 104 ~~wkrLNTL~HY~V~Dga------~l~l~~~ 128 (138)
T 2r2o_A 104 GLWRRLNTLQHYKVPDGA------TVALVPC 128 (138)
T ss_dssp TTEEECCBHHHHTCCTTC------EEEEEEC
T ss_pred CCceeecchhccCCCCCC------EEEEEEC
Confidence 289999999999 7777643
No 121
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=95.68 E-value=0.066 Score=41.17 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=48.4
Q ss_pred EEEEEeCCCC-eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCC-ceEEE--e-cC--eecCC-CCccccCCCCCCC
Q 032784 8 DIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLI--S-SG--KILEN-NKTVGQCKIPYGE 79 (133)
Q Consensus 8 ~l~~rl~~G~-~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~-~qrLI--y-~G--k~L~D-~~tLsd~~I~~g~ 79 (133)
.+++...+.. ....+.++..+||.+|++.+... .+++.+ +.||- | .+ ..|+| ++||.+++|.++.
T Consensus 129 ~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~-------~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q 201 (217)
T 4a3p_A 129 ELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKI-------FSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQ 201 (217)
T ss_dssp EEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHH-------TTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTC
T ss_pred EEEEEecCCCCcceEEEEcccchHHHHHHHHHHH-------hCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCC
Confidence 3444433322 34567889999999999999999 899997 79993 4 22 35666 5799999999887
No 122
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=95.63 E-value=0.039 Score=49.35 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=60.7
Q ss_pred eEEEEEEeCCC-----CeeeeEEeCCcccHHHHHHHHHhcCCCCCc-cCCCCCCceEEEe----cCe-ecCCCC------
Q 032784 6 LIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS----SGK-ILENNK------ 68 (133)
Q Consensus 6 ~i~l~~rl~~G-----~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~-~~gi~~~~qrLIy----~Gk-~L~D~~------ 68 (133)
.+.|.+....| .+.+++.|-.++||.++|++|.+.-=++.+ -.-..++++.|=+ .|+ +|.|..
T Consensus 257 ~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 336 (644)
T 3hm6_X 257 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ 336 (644)
T ss_dssp EEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred eEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceec
Confidence 44555544333 233578888999999999999855222211 1223467777765 233 466643
Q ss_pred -------ccccCCCCCCCCCCceEEEEEEecCCccchhhhhhhhhh-----hhhhhCCCCCcchhhhHhhh
Q 032784 69 -------TVGQCKIPYGEVPGGVIIMHVVVQPSLAKTKTALKVDAF-----WLLVLSLPFGFTLWALISPF 127 (133)
Q Consensus 69 -------tLsd~~I~~g~~~~~~~tlhlv~~~~~~~~~~~k~~~~~-----~~~~~~~~~~~~~~~~~~~~ 127 (133)
||+.|+|++|. +|-|+.+......-. ....+ .....+...+..+||++.|-
T Consensus 337 ~~wkrLNTL~HY~V~dga------~v~L~p~~~~~~~~~--~~~~~~~~~~p~~~~~~~~g~k~~HLVkp~ 399 (644)
T 3hm6_X 337 GLWRRLNTLQHYKVPDGA------TVALVPCLTKHVLRE--NQDYVPGERTPMLEDVDEGGIRPWHLVKPS 399 (644)
T ss_dssp TTEEECCBTTTTTCCTTC------EEEEEEC----------------------------CCCEEESSSCCC
T ss_pred CcceeecchhhcCCCCCc------EEEEEeccccccccc--cccccccCCCCCcCccccCCcceEEEecCc
Confidence 89999999999 777765443321100 00000 01111224556889998773
No 123
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.53 E-value=0.054 Score=38.81 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=50.4
Q ss_pred eEEEEEEeCCC--CeeeeEEeCCcccHHHHHHHHHhcCCCCCc-cCCCCCCceEEEe-cCe----ecCCC----------
Q 032784 6 LIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS-SGK----ILENN---------- 67 (133)
Q Consensus 6 ~i~l~~rl~~G--~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~-~~gi~~~~qrLIy-~Gk----~L~D~---------- 67 (133)
.+.|++....| ...+++.+-.++||.++|++|.+..=++.+ -....++++.|=+ .|+ +|.|.
T Consensus 13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w 92 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDW 92 (117)
T ss_dssp EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence 34444433332 233467888999999999999876422211 1223467888866 343 35541
Q ss_pred ---CccccCCCCCCCCCCceEEEEEEec
Q 032784 68 ---KTVGQCKIPYGEVPGGVIIMHVVVQ 92 (133)
Q Consensus 68 ---~tLsd~~I~~g~~~~~~~tlhlv~~ 92 (133)
.||+.|+|++|. +|-|+.+
T Consensus 93 krLNTL~HY~V~dga------tl~l~~~ 114 (117)
T 4e74_A 93 KRLNTLAHYQVPDGS------VVALVSK 114 (117)
T ss_dssp CCCCBHHHHTCCTTC------EEEEEEC
T ss_pred eEeccccccCCCCCC------EEEEEeC
Confidence 378889999998 7777654
No 124
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=95.22 E-value=0.073 Score=47.52 Aligned_cols=82 Identities=12% Similarity=0.245 Sum_probs=52.1
Q ss_pred eEEEEEEeCCC--CeeeeEEeCCcccHHHHHHHHHhcCCCCCc-cCCCCCCceEEEe-c---Ce-ecCCC----------
Q 032784 6 LIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS-S---GK-ILENN---------- 67 (133)
Q Consensus 6 ~i~l~~rl~~G--~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~-~~gi~~~~qrLIy-~---Gk-~L~D~---------- 67 (133)
.+.|.+...+| .+.+++.|-.++||.+||++|-+.-=++.+ -....++++.|=+ . |+ +|.|.
T Consensus 233 ~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~w 312 (627)
T 3ig3_A 233 TLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDW 312 (627)
T ss_dssp EEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTE
T ss_pred eEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCce
Confidence 44555544433 234578888999999999999866322211 1234577888865 2 33 45542
Q ss_pred ---CccccCCCCCCCCCCceEEEEEEecC
Q 032784 68 ---KTVGQCKIPYGEVPGGVIIMHVVVQP 93 (133)
Q Consensus 68 ---~tLsd~~I~~g~~~~~~~tlhlv~~~ 93 (133)
.||+.|+|++|. +|-|+.+.
T Consensus 313 krLNTL~HY~V~Dga------~v~L~p~~ 335 (627)
T 3ig3_A 313 KRVNSLAHYQVTDGS------LVALVPKQ 335 (627)
T ss_dssp EECCBTTTTTCCTTC------EEEEEEC-
T ss_pred eEecchhhcCCCCCc------eEEEEecc
Confidence 378999999999 77776554
No 125
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.67 E-value=0.31 Score=37.73 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=44.2
Q ss_pred eeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCC-ceEEEe-c----CeecCC-CCccccCCCCCCC
Q 032784 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLIS-S----GKILEN-NKTVGQCKIPYGE 79 (133)
Q Consensus 19 i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~-~qrLIy-~----Gk~L~D-~~tLsd~~I~~g~ 79 (133)
.+.+.++..+||.+|++.+... .+++.+ ..||-. . ...|.| +.||.+++|.++.
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~-------~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q 213 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKL-------FNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQ 213 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHH-------TTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTE
T ss_pred eEEEEecccCcHHHHHHHHHHH-------hCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCC
Confidence 3456789999999999999999 899997 699943 3 235765 5899999999887
No 126
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.70 E-value=0.53 Score=34.10 Aligned_cols=67 Identities=21% Similarity=0.221 Sum_probs=41.5
Q ss_pred eeeeEEeCCcccHHHHHHHHHhcCCCCCc-cCCCCCCceEEEe-cC---eecCCC--------------CccccCCCCCC
Q 032784 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLIS-SG---KILENN--------------KTVGQCKIPYG 78 (133)
Q Consensus 18 ~i~~~~v~p~~TV~~lK~~I~~~wP~~~~-~~gi~~~~qrLIy-~G---k~L~D~--------------~tLsd~~I~~g 78 (133)
+-+++.+-.++||.++|++|.+..=.+++ +....++++.|=+ .| ++|.|. .||+.|+|++|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 34577888999999999998766310000 1222366777755 23 244331 26777999999
Q ss_pred CCCCceEEEEEE
Q 032784 79 EVPGGVIIMHVV 90 (133)
Q Consensus 79 ~~~~~~~tlhlv 90 (133)
. +|-|+
T Consensus 119 a------tlal~ 124 (126)
T 3kuz_A 119 S------TIKVF 124 (126)
T ss_dssp C------EEEEE
T ss_pred C------EEEEe
Confidence 8 66654
No 127
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.31 E-value=0.73 Score=31.56 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=56.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe---cCeecCCCCccccCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS---SGKILENNKTVGQCKIPY 77 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy---~Gk~L~D~~tLsd~~I~~ 77 (133)
+.++.|.+...-..+ ..+.|+|..+..++--.|.++ ..++++..-|.. ++..|+=+++|.||||.+
T Consensus 8 E~TvRLvVNy~~tQK-tVvRVSP~vpL~ellp~IC~K-------cefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQK-TIVRVSPHASLQELAPIICSK-------CEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEE-EEEEECSSSCTTTHHHHHHHH-------TTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCcce-eEEEeCCCCcHHHHHHHHhhc-------ccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 567888888886644 468999999999999999999 888999888865 566889999999999985
No 128
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=89.59 E-value=1.4 Score=30.11 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=52.3
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEecCCcc
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~~~~~~ 96 (133)
.-.++=..++..||+.++.+ .+++-+.-.+-..+.+|+++++|.|-+++-. |.+.+.+-+....+
T Consensus 6 ~qhmDI~epL~~Lk~LLe~R-------l~i~L~~y~f~LQd~~L~~~k~LvdQcVqge----GlVQinvqik~~~~ 70 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPR-------LQCSLDAHEICLQDIQLDPDRSLFDQGVKTD----GTVQLSVQVISYQG 70 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHH-------HCSCCSSCEEEETTEECCTTSBTTTSSCCCC----SEEEEEEEEECCTT
T ss_pred hhhccccCcHHHHHHHHHHH-------hcCCcccCeEEeeccccCCCccHHHhhcccc----cEEEEEEEEEecCC
Confidence 34556677889999999999 8999999999889999999999999999843 35566666665544
No 129
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=89.31 E-value=3 Score=33.16 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=41.2
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe-ecCCC-CccccCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-ILENN-KTVGQCK 74 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk-~L~D~-~tLsd~~ 74 (133)
........+.+.+..|+.++++.++++ .++++++|.|+|.+. +.-|. .+.++|.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 318 LQQMTAHKIYIHSYNTATIFHELVYKQ-------TKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTTTEEEEEEECTTCBHHHHHHHHHHH-------HCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred eccceEEEEEcCchhHHHHHHHHHHHh-------cCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 333356667889999999999999999 999999999999984 44333 3444443
No 130
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=87.56 E-value=1.6 Score=30.11 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=44.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCce-EEE------ecCeecCCCCccccC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEI-KLI------SSGKILENNKTVGQC 73 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~q-rLI------y~Gk~L~D~~tLsd~ 73 (133)
...+.|+|-..+|+. ..+.|++++|+.+|-+.+.++ ..+..+.- -|+ +.-|.++|.+-|-+.
T Consensus 7 ~~k~vvkvf~~Dgss-ksi~V~~~~Ta~dv~~~L~~K-------~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvev 75 (100)
T 1wgr_A 7 GRPHVVKVYSEDGAC-RSVEVAAGATARHVCEMLVQR-------AHALSDETWGLVECHPHLALERGLEDHESVVEV 75 (100)
T ss_dssp CSCEEEEEEETTSCE-EEEEECTTCCHHHHHHHHHCS-------SSCCCCCCCCEEEEETTTTEEEEECSSSCHHHH
T ss_pred CCCEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHHH-------cCCCCCCCeEEEEecCCCCcEEeccCchhHHHH
Confidence 456899999999955 579999999999999999999 33322211 111 244778888776655
No 131
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=86.50 E-value=1.1 Score=31.40 Aligned_cols=70 Identities=11% Similarity=0.125 Sum_probs=45.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCcc---CCCCCCceEEEe---cCee--cC-CCCccccCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTI---VPKAVTEIKLIS---SGKI--LE-NNKTVGQCK 74 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~---~gi~~~~qrLIy---~Gk~--L~-D~~tLsd~~ 74 (133)
.+.+.|.+.+.+|. +..+++..+.|+.++|+.+.++ ..+.+ .=-.+++-.+.. .|.+ |. +++-|.|..
T Consensus 17 ~~~v~v~~LlPnGi-~i~l~~~~~~tl~eiK~~lw~e--A~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~ 93 (108)
T 2v1y_A 17 PPRILVECLLPNGM-IVTLECLREATLITIKHELFKE--ARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLR 93 (108)
T ss_dssp CSEEEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHH--GGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSC
T ss_pred CCcEEEEEEcCcEE-EEEEEeeccccHHHHHHHHHHH--HHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecc
Confidence 47899999999994 4578999999999999998877 11110 111233333322 2343 64 447888777
Q ss_pred CC
Q 032784 75 IP 76 (133)
Q Consensus 75 I~ 76 (133)
.-
T Consensus 94 pf 95 (108)
T 2v1y_A 94 LF 95 (108)
T ss_dssp BS
T ss_pred cc
Confidence 65
No 132
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.17 E-value=1.9 Score=28.90 Aligned_cols=47 Identities=6% Similarity=0.038 Sum_probs=38.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk 62 (133)
.+.|++... .++.+.+.++.+..+|.++|.++ .+++++...|-|.-+
T Consensus 5 ~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~k-------L~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 5 AYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKK-------LELRLEHTKLSYRPR 51 (83)
T ss_dssp CEEEEEESS---SEEEEEECTTCCHHHHHHHHHHH-------TTCCGGGCCEEECCT
T ss_pred cEEEEEEEE---EEEEEECCCCCCHHHHHHHHHHH-------hCCCcceeEEEeeCC
Confidence 355555555 45679999999999999999999 888899999988654
No 133
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=85.82 E-value=1.7 Score=29.45 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=36.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeC-CcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~-p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~ 74 (133)
++.|+ +|..+.++...+.|+ ...+|.+||..|.++ ...-..+.-| .|-|.+|=++|.
T Consensus 6 mS~V~--YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~-------~kl~~~dfDL-----~i~na~T~eeY~ 63 (86)
T 2c7h_A 6 MSCVH--YKFSSKLNYDTVTFDGLHISLCDLKKQIMGR-------EKLKAADCDL-----QITNAQTKEEYT 63 (86)
T ss_dssp BEEEE--EEETTCSSEEEEEESSSEEEHHHHHHHHHHH-------HTCCTTTEEE-----EEEESSSCCEEC
T ss_pred eeEEE--EEEeecCCcceEEEcCCEEEHHHHHHHHHHH-------hCCCCCcccE-----EEeCCCCCCccC
Confidence 44444 444677666778888 467999999999988 4444455555 223455555554
No 134
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=85.30 E-value=3.4 Score=26.53 Aligned_cols=49 Identities=12% Similarity=0.271 Sum_probs=36.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCC
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~ 68 (133)
.|++++. |.....++++++.||++|=+ + .+++++..-..-+|+.+.-++
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~----~-------Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDDDGTYADLVR----A-------VDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECS-SSSEEEEECSTTCSHHHHHH----T-------TCCCSSCCCEECCCCCCCTTS
T ss_pred EEEEEEe-CccceeEEcCCCCcHHHHHH----H-------cCCCcceEEEEECCEECCHHH
Confidence 4566666 44445689999999998643 3 688888887888999886555
No 135
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=84.66 E-value=0.63 Score=33.34 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=29.4
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS 60 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~ 60 (133)
++.|-.++|+.++|+.|++. .|+++++|||-.-
T Consensus 59 ~~rv~k~~~~~~~~~~va~~-------lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQT-------MGFPQDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHH-------HCCCGGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHH-------hCCCcccEEEEEe
Confidence 57778899999999999999 9999999999543
No 136
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=79.73 E-value=3 Score=37.10 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=43.1
Q ss_pred eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe-ecCCCCccccCCCC
Q 032784 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-ILENNKTVGQCKIP 76 (133)
Q Consensus 18 ~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk-~L~D~~tLsd~~I~ 76 (133)
....+.+.+++|+.++++.|.+. .+++++.|.|++.+. .++.+...++|.+.
T Consensus 322 ~~~~~~i~~~~tl~~l~~~i~~~-------T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~ 374 (676)
T 3qa8_A 322 RVHTYPVTENENLQNLKSWLQQD-------TGIPEEEQELLQASGLALNSAQPLTQYVID 374 (676)
T ss_dssp CCCEEECCTTCCHHHHHHHHHTT-------SCCCSTTCEEESSSSCCCCTTSCGGGSCCC
T ss_pred ccceeecCCCccHHHHHHHHHHH-------hCCCHHHHHHHhccCCCCCCCcchhhheec
Confidence 55578899999999999999999 999999999999665 45666677777543
No 137
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=79.58 E-value=17 Score=27.95 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=54.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCc-eEEEe---cCe--ecCCCCccccCCCCCCCC
Q 032784 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLIS---SGK--ILENNKTVGQCKIPYGEV 80 (133)
Q Consensus 7 i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~-qrLIy---~Gk--~L~D~~tLsd~~I~~g~~ 80 (133)
|.++|.+.+| .+ .+.+++++|+.+|=+.|.++ .++...+ .=|.| .|. .|+.++++.+.++..+.
T Consensus 2 i~~~V~l~d~-~~-~~~v~~~tt~~el~~~v~~~-------l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~- 71 (294)
T 1ef1_A 2 ISVRVTTMDA-EL-EFAIQPNTTGKQLFDQVVKT-------IGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKES- 71 (294)
T ss_dssp EEEEEEETTE-EE-EEEECTTCBHHHHHHHHHHH-------HTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCS-
T ss_pred EEEEEEECCc-eE-EEEECCCCcHHHHHHHHHHH-------cCCCCcceeEEEEECCCCceeecccccCHHhhccCCCC-
Confidence 7899999999 54 69999999999999999998 6654332 34433 233 47778888887654433
Q ss_pred CCceEEEEEEecCCcc
Q 032784 81 PGGVIIMHVVVQPSLA 96 (133)
Q Consensus 81 ~~~~~tlhlv~~~~~~ 96 (133)
+..+++-++.-.+
T Consensus 72 ---~~~l~fr~kf~~~ 84 (294)
T 1ef1_A 72 ---PLLFKFRAKFYPE 84 (294)
T ss_dssp ---SEEEEEEESSCCS
T ss_pred ---CEEEEEEEEEECC
Confidence 4567777665544
No 138
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=79.22 E-value=8.4 Score=36.43 Aligned_cols=81 Identities=12% Similarity=0.228 Sum_probs=56.6
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc---CCCCCccCCCCCCceEEEecCe-----ec-CCCCccccC
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQC 73 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~---wP~~~~~~gi~~~~qrLIy~Gk-----~L-~D~~tLsd~ 73 (133)
.++.|.|.|.+++|. +..+++..+.|++++|+.|.++ .|-.. .-..+++-.+.+-++ .+ ++.+.|.++
T Consensus 48 ~~~~v~vd~LLPnGi-~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~~--~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~ 124 (1092)
T 2y3a_A 48 SDGAISVDFLLPTGI-YIQLEVPREATISYIKQMLWKQVHNYPMFN--LLMDIDSYMFACVNQTAVYEELEDETRRLCDV 124 (1092)
T ss_dssp CCSEEEEEEECTTCC-EEEEEEETTCBHHHHHHHHHHHGGGSTTTT--SCCCGGGEEEEEEBSSSCEEECCCTTSBSGGG
T ss_pred CCCceEEEEECCCce-EEEEEecCcccHHHHHHHHHHHHHhCCchh--ccCCcceeEEEEecCCceEEEeecCceeeEee
Confidence 467899999999995 5589999999999999999877 12110 223566777766322 25 555888888
Q ss_pred CCCCCCCCCceEEEEEEecC
Q 032784 74 KIPYGEVPGGVIIMHVVVQP 93 (133)
Q Consensus 74 ~I~~g~~~~~~~tlhlv~~~ 93 (133)
..--. .+.++-+.
T Consensus 125 ~~~~p-------~l~lve~~ 137 (1092)
T 2y3a_A 125 RPFLP-------VLKLVTRS 137 (1092)
T ss_dssp CBSSS-------CEEEEESC
T ss_pred cccce-------EEEEEecC
Confidence 65422 47888763
No 139
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=79.01 E-value=14 Score=29.70 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCC-CCceEEEecC---------eecCCCCccccCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKA-VTEIKLISSG---------KILENNKTVGQCKI 75 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~-~~~qrLIy~G---------k~L~D~~tLsd~~I 75 (133)
.+.++|.+.+|.. ..+.+++++|+.+|=+.|.++ .++. .+..-|.+.. +.|+-++++.+-+.
T Consensus 85 ~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v~~~-------l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~ 156 (371)
T 3ivf_A 85 QRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTICAR-------IGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGV 156 (371)
T ss_dssp EEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHHH-------TTCSCGGGEEEECCC----------CCCTTSBTGGGTC
T ss_pred eeEEEEECcCCCE-EEEEECCCCCHHHHHHHHHHH-------cCCCCccccEEEEEecccccchHHHHHhcCchhHhhCC
Confidence 4678899999954 579999999999999999998 5543 3344554421 34566677776655
Q ss_pred CCCCCCCceEEEEEEecC
Q 032784 76 PYGEVPGGVIIMHVVVQP 93 (133)
Q Consensus 76 ~~g~~~~~~~tlhlv~~~ 93 (133)
.... ++++.++.
T Consensus 157 ~~~~------~l~frvKf 168 (371)
T 3ivf_A 157 EEHE------TLLLRRKF 168 (371)
T ss_dssp CTTC------EEEEEECC
T ss_pred CCCc------eEEEEEEE
Confidence 4332 56765543
No 140
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=78.17 E-value=11 Score=24.09 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=40.6
Q ss_pred CCeeeeEEeCCcccHHHHHHHHHhcCCCCCc----cCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEE
Q 032784 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKT----IVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (133)
Q Consensus 16 G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~----~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv 90 (133)
|..-..++++...||.+|.+.+.++.|.-.+ ..+--....++.-+|+.... +.-+++|+ .+.+.
T Consensus 16 g~~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gD------eV~i~ 83 (89)
T 3po0_A 16 GSRTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGD------ELALF 83 (89)
T ss_dssp TCSEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTC------EEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCC------EEEEE
Confidence 4333457887788999999999998653210 00111123677778888765 34577888 56654
No 141
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=78.09 E-value=12 Score=24.57 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=37.4
Q ss_pred eeEEeCCcccHHHHHHHHHhcCCCCCcc----CCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 20 GPFRYSSASTVDMLKQRIVSDWPKGKTI----VPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 20 ~~~~v~p~~TV~~lK~~I~~~wP~~~~~----~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
..+++.+..||.+|.+.+...+|.-.+. .|-......+.-+|+.... +.-+++|+
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGD 87 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGD 87 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTC
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCC
Confidence 4578878899999999999886532110 1112345677788888763 45678888
No 142
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=77.64 E-value=15 Score=28.65 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=56.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC-CceEEEe--cCe--ecCCCCccccCCCCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEIKLIS--SGK--ILENNKTVGQCKIPYGE 79 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~-~~qrLIy--~Gk--~L~D~~tLsd~~I~~g~ 79 (133)
..+.++|.+.+| .+ .+++++++|+.+|=+.|.++ .++.. +..=|.| .|. .|+.+++|.+..+..+.
T Consensus 21 ~~~~~~V~lldg-~~-~~~v~~~t~~~el~~~v~~~-------l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~ 91 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EM-EFNCEMKWKGKDLFDLVCRT-------LGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEE 91 (314)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHH-------HTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSS
T ss_pred CeeEEEEEeCCc-eE-EEEeCCCCcHHHHHHHHHHH-------hCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCC
Confidence 578899999999 65 59999999999999999988 66543 2334444 343 47888889887655443
Q ss_pred CCCceEEEEEEecCCcc
Q 032784 80 VPGGVIIMHVVVQPSLA 96 (133)
Q Consensus 80 ~~~~~~tlhlv~~~~~~ 96 (133)
+..+++-++--..
T Consensus 92 ----~~~l~fr~kf~~~ 104 (314)
T 1h4r_A 92 ----PVTFHFLAKFYPE 104 (314)
T ss_dssp ----SEEEEEEESSCCS
T ss_pred ----CEEEEEEEEEecC
Confidence 4467776655443
No 143
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=75.72 E-value=11 Score=23.47 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=34.4
Q ss_pred CCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEE
Q 032784 25 SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (133)
Q Consensus 25 ~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv 90 (133)
.+..||.+|.+.+..+.|.-.. -++.....+..+|+.... +.-+++|+ .+.++
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~--~l~~~~~~v~vN~~~v~~-----~~~l~~gD------~V~i~ 75 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWAL--ALEDGKLLAAVNQTLVSF-----DHPLTDGD------EVAFF 75 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHH--HHCCTTCEEEETTEECCT-----TCBCCTTC------EEEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHH--HhcCCCEEEEECCEECCC-----CCCCCCCC------EEEEe
Confidence 4678999999999877431110 022334567788888753 34677888 67765
No 144
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=75.30 E-value=13 Score=24.85 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=33.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCc-eEEEec
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISS 60 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~-qrLIy~ 60 (133)
.|.||+... | ++..+.++++.+..+|.++|.+. .+++.++ ..|-|.
T Consensus 6 ~vkvK~~~~-g-di~~~~v~~~i~~~~L~~kv~~~-------~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 6 QVRVKAYYR-G-DIMITHFEPSISFEGLCNEVRDM-------CSFDNEQLFTMKWI 52 (89)
T ss_dssp CEEEEEESS-S-CEEEEEECTTCCHHHHHHHHHHH-------TTCCSSCCEEEEEC
T ss_pred eEEEEEEeC-C-eEEEEECCCCCCHHHHHHHHHHH-------hCCCCCCeEEEEEE
Confidence 344444333 4 67789999999999999999999 6666544 666554
No 145
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=72.04 E-value=15 Score=22.80 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=35.3
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEe
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~ 91 (133)
.+++ ...||.+|.+.+..+ |. .. --.....+.-+|+...+ .+.-+++|+ .+.++-
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~-~~-l~---~~l~~~~vavN~~~v~~----~~~~l~~gD------eV~i~P 69 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEK-EG-LK---EWLGVCAIALNDHLIDN----LNTPLKDGD------VISLLP 69 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTC-TT-TT---TTTTTCEEEESSSEECC----TTCCCCTTC------EEEEEC
T ss_pred EEee-CCCcHHHHHHHHHHC-cC-HH---HHhhccEEEECCEEcCC----CCcCCCCCC------EEEEEC
Confidence 4567 568999999999876 31 10 01245666678887543 245678898 666653
No 146
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=71.49 E-value=9.3 Score=23.62 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=33.4
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+++....||.+|.+.+....|.- ..+ ...+..+|+....+ ..+++|+
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p~~---~~v---~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYPQI---NNK---KFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCGGG---TTC---CCEEEETTEEECTT-----SEECTTC
T ss_pred EEECCCCCCHHHHHHHHHHHCcch---hcc---eEEEEECCEECCCC-----CCcCCCC
Confidence 466677889999999998884420 111 13677899988654 4567888
No 147
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=71.18 E-value=24 Score=30.69 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=57.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC-CceEEEec---C--eecCCCCccccCCCCCC
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEIKLISS---G--KILENNKTVGQCKIPYG 78 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~-~~qrLIy~---G--k~L~D~~tLsd~~I~~g 78 (133)
-.|.++|.+.+| .+ .+.|++++|+.+|-+.|... .|+.- +..=|.|. | ..|+.++++.+.++..+
T Consensus 3 k~i~v~V~llDg-t~-e~~vd~~tt~~ell~~V~~~-------LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~ 73 (575)
T 2i1j_A 3 KSMNVRVTTMDA-EL-EFAIQQTTTGKQLFDQVVKT-------IGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE 73 (575)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHH-------HTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC
T ss_pred ceEEEEEEeCCC-eE-EEEECCCCCHHHHHHHHHHH-------cCCCCccceeEEEEecCcchhHhhccccHHHhcccCC
Confidence 368899999999 54 69999999999999999988 66543 33445442 2 35777888888766544
Q ss_pred CCCCceEEEEEEecCCccc
Q 032784 79 EVPGGVIIMHVVVQPSLAK 97 (133)
Q Consensus 79 ~~~~~~~tlhlv~~~~~~~ 97 (133)
. +..+++-++.-.+.
T Consensus 74 ~----~~~L~FRvkfy~~~ 88 (575)
T 2i1j_A 74 N----PLQFKFRAKFYPED 88 (575)
T ss_dssp S----SEEEEEEESSCCSS
T ss_pred C----CeEEEEEEEEcCCC
Confidence 3 55777777666543
No 148
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=70.20 E-value=22 Score=23.88 Aligned_cols=71 Identities=6% Similarity=0.042 Sum_probs=50.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCcc-CCCCCCceEEEecCee--cCCCCccccCCCCCCC
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTI-VPKAVTEIKLISSGKI--LENNKTVGQCKIPYGE 79 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~-~gi~~~~qrLIy~Gk~--L~D~~tLsd~~I~~g~ 79 (133)
.+-|.-+....--...+-++.++|+.+|-++++.. .-+. -...+.-.|.-+.|+. |.++.|+++.||..-+
T Consensus 3 ~~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h---~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 3 AFPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYH---CVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHT---TBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred ccceEEEeccccEEEEEEecCCCcHHHHHHHHhhh---hcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 44455555544333457899999999999999876 1010 1122347899999998 9999999999998776
No 149
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=67.02 E-value=3.3 Score=35.70 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=28.6
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI 58 (133)
.+.+..++|+.+||++|++. .|+++++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~-------lg~~~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQT-------MGFPQDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHH-------HTSCGGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHH-------hCcCcccEEEE
Confidence 57788899999999999999 99999999994
No 150
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=67.01 E-value=13 Score=25.05 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=25.8
Q ss_pred EEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc
Q 032784 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 9 l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
+++++.-.-+++.+.+.++.+..+|+++|.++
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~R 44 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPR 44 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHH
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444422378899999999999999999999
No 151
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=65.74 E-value=6.5 Score=30.88 Aligned_cols=78 Identities=12% Similarity=-0.076 Sum_probs=52.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCc-eEEEec---C--eecCCCCccccCCCCC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISS---G--KILENNKTVGQCKIPY 77 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~-qrLIy~---G--k~L~D~~tLsd~~I~~ 77 (133)
...+.++|.+.||.. ..+.|++.+|+.+|=+.|.++ .|+...+ .=|.|. | +.|+.++++.+....
T Consensus 15 ~~~~~~~V~lldgt~-~~~~vd~~tt~~el~~~v~~~-------l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~- 85 (296)
T 3qij_A 15 YFQGHCKVSLLDDTV-YECVVEKHAKGQDLLKRVCEH-------LNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRG- 85 (296)
T ss_dssp --CCEEEEECTTSCE-EEEECCTTCBHHHHHHHHHHH-------HTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---
T ss_pred CceEEEEEEccCCCE-EEEEECCCCCHHHHHHHHHHH-------cCCCCcceeEEEEEcCCCccchhccchhHHHhcCC-
Confidence 347899999999955 579999999999999999999 6654332 344442 2 357777777765322
Q ss_pred CCCCCceEEEEEEecCCc
Q 032784 78 GEVPGGVIIMHVVVQPSL 95 (133)
Q Consensus 78 g~~~~~~~tlhlv~~~~~ 95 (133)
. +.++++-++--.
T Consensus 86 ~-----~~~l~frvkfy~ 98 (296)
T 3qij_A 86 V-----PWNFTFNVKFYP 98 (296)
T ss_dssp ------CCEEEEEESSCC
T ss_pred C-----CcEEEEEEEEeC
Confidence 1 236777666544
No 152
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=65.54 E-value=16 Score=28.69 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=29.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
.+..|+|-..+|.. ..+.|++++|+.+|-+.+.++
T Consensus 7 ~~~ivkv~~~d~ss-~~l~V~~~mta~ev~~~l~~k 41 (256)
T 3hk0_A 7 AKQDVKVFSEDGTS-KVVEILADMTARDLCQLLVYK 41 (256)
T ss_dssp -CEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHCC
T ss_pred CceEEEEEecCCcE-EEEEECCCCCHHHHHHHHHHh
Confidence 45567888899955 479999999999999999887
No 153
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=63.39 E-value=16 Score=24.06 Aligned_cols=43 Identities=5% Similarity=-0.092 Sum_probs=35.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI 58 (133)
.|++.++++ +...+++-|++|+.+-=.++.+. .++.++.....
T Consensus 3 ~irvhLPn~-QrT~V~VrpG~tlrdaL~KaLk~-------R~L~pe~C~V~ 45 (77)
T 1c1y_B 3 TIRVFLPNK-QRTVVNVRNGMSLHDCLMKALKV-------RGLQPECCAVF 45 (77)
T ss_dssp EEEEEETTT-EEEEEECCTTCBHHHHHHHHHHT-------TTCCGGGEEEE
T ss_pred eEEEECCCC-ceEEEEecCCcCHHHHHHHHHHH-------cCCCHHHeEEE
Confidence 478889999 66689999999999999999998 88877766553
No 154
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=62.53 E-value=25 Score=23.85 Aligned_cols=64 Identities=14% Similarity=0.181 Sum_probs=40.1
Q ss_pred eeeEEeCCcccHHHHHHHHHhcCCCC--CccCCCCCC----ceEEEecC-eecCC------CCccccCCCCCCCCCCceE
Q 032784 19 IGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVT----EIKLISSG-KILEN------NKTVGQCKIPYGEVPGGVI 85 (133)
Q Consensus 19 i~~~~v~p~~TV~~lK~~I~~~wP~~--~~~~gi~~~----~qrLIy~G-k~L~D------~~tLsd~~I~~g~~~~~~~ 85 (133)
...++++++.|..+|-+.+.+. |.- +. .++... .-.|+..+ ..|+. +++|.+.|+.+|+
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~-p~~qlk~-PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~------ 77 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNS-ASLQMKS-PAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ------ 77 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHC-TTCCCSS-CEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC------
T ss_pred cEEEEECCchhHHHHHHHHHhC-hHhhccC-CeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC------
Confidence 3468999999999999999997 111 00 011111 33443333 24443 4679999999998
Q ss_pred EEEEE
Q 032784 86 IMHVV 90 (133)
Q Consensus 86 tlhlv 90 (133)
.+|+.
T Consensus 78 ei~Vt 82 (98)
T 1y8x_B 78 ELAVA 82 (98)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 56663
No 155
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=60.50 E-value=38 Score=23.23 Aligned_cols=81 Identities=7% Similarity=0.001 Sum_probs=46.3
Q ss_pred eEEEEEEeCC------CC-eeeeEEeCC---cccHHHHHHHHHhcCCCCCcc----CCCCCCceEEEecCe---ecCCCC
Q 032784 6 LIDIKFRLYD------GS-DIGPFRYSS---ASTVDMLKQRIVSDWPKGKTI----VPKAVTEIKLISSGK---ILENNK 68 (133)
Q Consensus 6 ~i~l~~rl~~------G~-~i~~~~v~p---~~TV~~lK~~I~~~wP~~~~~----~gi~~~~qrLIy~Gk---~L~D~~ 68 (133)
.+.|++++.. |. +...++++. ..||.+|-+.+.+++|..++. .+---..+.++-+|+ .|..
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~g-- 88 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGE-- 88 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCT--
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCC--
Confidence 3556666543 32 233567773 369999999999999877431 121112234444554 2222
Q ss_pred ccccCCCCCCCCCCceEEEEEEecCCcc
Q 032784 69 TVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (133)
Q Consensus 69 tLsd~~I~~g~~~~~~~tlhlv~~~~~~ 96 (133)
.++-+++|+ .+.++-...||
T Consensus 89 --ldt~L~dGD------eV~iip~vaGG 108 (114)
T 1wgk_A 89 --LDYQLQDQD------SILFISTLHGG 108 (114)
T ss_dssp --TTCBCCSSE------EEEEEECSCCC
T ss_pred --cCcCCCCCC------EEEEeCCCCCC
Confidence 246788998 56665544454
No 156
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=60.27 E-value=23 Score=28.23 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=42.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe-------cCeecCCCCccccC
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-------SGKILENNKTVGQC 73 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy-------~Gk~L~D~~tLsd~ 73 (133)
..++.++|-+.+|+. ..+.|++++|+.+|-+.+..+ .+...+.---+| --|.|+|.+.+-|.
T Consensus 29 ~~k~ivkv~~~D~ss-~~l~V~~~~TA~dv~~~L~~k-------~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dv 97 (281)
T 4gmv_A 29 VKKLVIRVHMSDDSS-KTMMVDERQTVRQVLDNLMDK-------SHCGYSLDWSLVETVSELQMERIFEDHENLVEN 97 (281)
T ss_dssp SCEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHHH-------SCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHH
T ss_pred cccEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHHh-------cCCCCCCCeEEEEEcCCccceeccccchhHHHH
Confidence 346789999999954 479999999999999988887 333222211111 13678887777654
No 157
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=59.45 E-value=37 Score=22.82 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHH--hcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCc
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIV--SDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~--~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~ 83 (133)
.|+|.+-+.+......+++.++.||.++=+... +.. ..++.+...+-.+|+.... +.-+++||
T Consensus 14 ~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~------peIdl~~~~V~Vng~~v~~-----d~~L~dGD---- 78 (97)
T 2hj1_A 14 NIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQF------PEIDLSTNKIGIFSRPIKL-----TDVLKEGD---- 78 (97)
T ss_dssp EEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHC------TTCCTTTSEEEEEECSCCT-----TCBCCTTC----
T ss_pred EEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccC------CcccccccEEEEcCEECCC-----CccCCCCC----
Confidence 577777777765677889999999999877654 231 2356667788888988873 44577899
Q ss_pred eEEEEEEecCCccchh
Q 032784 84 VIIMHVVVQPSLAKTK 99 (133)
Q Consensus 84 ~~tlhlv~~~~~~~~~ 99 (133)
.+-++ ++.-..+|
T Consensus 79 --RVEIy-rpl~~DPk 91 (97)
T 2hj1_A 79 --RIEIY-RPLLADPK 91 (97)
T ss_dssp --EEEEC-CCCC----
T ss_pred --EEEEE-ecccCCHH
Confidence 45543 44444444
No 158
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=59.23 E-value=25 Score=23.42 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=43.9
Q ss_pred CceEEEEEEeCCCCee---eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC-eec-CCCCccccC
Q 032784 4 EELIDIKFRLYDGSDI---GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG-KIL-ENNKTVGQC 73 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i---~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G-k~L-~D~~tLsd~ 73 (133)
..+|.|+|+-.+.-.+ ..+.|+.+.||+++...|..+ ..+++++--.+|-+ ..+ .-++++++.
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkr-------L~l~~~~alFlyVnn~~~P~~d~~~~~L 70 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKF-------LKLVASEQLFIYVNQSFAPSPDQEVGTL 70 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHH-------TTCCSSSCCEEEETTTBCCCTTCBHHHH
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHH-------hCCCCCCeEEEEECCccCCChhhHHHHH
Confidence 4678888887655221 237899999999999999999 77777765555644 444 446666553
No 159
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=58.23 E-value=30 Score=21.31 Aligned_cols=43 Identities=9% Similarity=0.207 Sum_probs=32.4
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.++++...||.+|.+.+. ++++...+..+|+++..+. -+++|+
T Consensus 17 ~~~~~~~~tv~~Ll~~l~-----------~~~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELE-----------IPIETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEESSCCBHHHHHHHTT-----------CCTTTEEEEETTEECCTTS-----BCCTTC
T ss_pred eEECCCCCcHHHHHHHhC-----------CCCCCEEEEECCEECCCcc-----cCCCCC
Confidence 468888899999987753 3456677889999997665 567888
No 160
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=57.18 E-value=11 Score=35.81 Aligned_cols=80 Identities=11% Similarity=0.142 Sum_probs=51.6
Q ss_pred Cce-EEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCc---cCCCCCCceEEEecCe-----ec-CCCCccccC
Q 032784 4 EEL-IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKT---IVPKAVTEIKLISSGK-----IL-ENNKTVGQC 73 (133)
Q Consensus 4 ~~~-i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~---~~gi~~~~qrLIy~Gk-----~L-~D~~tLsd~ 73 (133)
++. |.|.|.+.+|. ++.+++..+.|+.++|+.+.++ ..+. ..-.++++-.+.|-.+ .+ ++.+.|.|+
T Consensus 39 ~~~~i~vd~LLPnGi-~i~l~v~~~~tl~~iK~~lw~~--a~~~pl~~~l~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~ 115 (1091)
T 3hhm_A 39 MPPRILVECLLPNGM-IVTLECLREATLITIKHELFKE--ARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDL 115 (1091)
T ss_dssp ----EEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHH--GGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBTTTS
T ss_pred CCCceEEEEEcCCCe-EEEEEecCCCcHHHHHHHHHHH--HHhCcchhhcCChhHeEEEEEccCceEeeeecCceeeEEe
Confidence 344 99999999995 5579999999999999999877 1111 0124566666666433 35 444577777
Q ss_pred CCCCCCCCCceEEEEEEecC
Q 032784 74 KIPYGEVPGGVIIMHVVVQP 93 (133)
Q Consensus 74 ~I~~g~~~~~~~tlhlv~~~ 93 (133)
.+-- . .+.++.+.
T Consensus 116 ~~~~-~------~l~lve~~ 128 (1091)
T 3hhm_A 116 RLFQ-P------FLKVIEPV 128 (1091)
T ss_dssp CBSS-S------EEEEECCC
T ss_pred eccc-e------eEEEEecC
Confidence 6542 1 46766544
No 161
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=54.71 E-value=20 Score=30.36 Aligned_cols=47 Identities=9% Similarity=0.118 Sum_probs=38.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC--CceEEEe
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV--TEIKLIS 59 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~--~~qrLIy 59 (133)
..+.++|.+.+|.. ..+.+++.+|+.+|-+.|.++ .|+.. +..-|.+
T Consensus 215 ~~~~~~V~l~dg~~-~~~~v~~~tt~~el~~~v~~~-------lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 215 QEMTSTVYCHGGGS-CKITINSHTTAGEVVEKLIRG-------LAMEDSRNMFALFE 263 (555)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHHH-------TTCTTCCSEEEEEE
T ss_pred CCcceEEEecCCCe-EEEEeCCCCcHHHHHHHHHHH-------cCCCCCCCceEEEE
Confidence 35789999999965 478999999999999999999 77763 4455544
No 162
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=54.69 E-value=48 Score=22.63 Aligned_cols=59 Identities=8% Similarity=-0.059 Sum_probs=42.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEe--cC--eecCCCCccc
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SG--KILENNKTVG 71 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy--~G--k~L~D~~tLs 71 (133)
..-.|++.|+++ +...+++-|++|+.+-=.++.+. .++.++..-..- .| ..++-+.-++
T Consensus 16 ~~~~irvhLPNq-QrT~V~VrpG~tlrdAL~KaLk~-------R~L~pe~C~Vy~~~~~~~~~IdWdtDi~ 78 (95)
T 2l05_A 16 QKPIVRVFLPNK-QRTVVPARCGVTVRDSLKKALMM-------RGLIPECCAVYRIQDGEKKPIGWDTDIS 78 (95)
T ss_dssp CSCEEEEEETTT-EEEEEECCTTCBHHHHHHHHHHH-------HTCCGGGEEEEEEETTEEEEECTTSBGG
T ss_pred CccEEEEECCCC-CeEEEEecCCcCHHHHHHHHHHH-------cCCCHHHcEEEEcCCCCccccchhHhhh
Confidence 344789999999 66689999999999999998888 888777665532 24 3444444444
No 163
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=52.78 E-value=20 Score=21.67 Aligned_cols=29 Identities=14% Similarity=0.043 Sum_probs=21.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHh
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVS 39 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~ 39 (133)
.+++.+.+|. ..+++.+.|+.++-+.+..
T Consensus 2 ~i~i~~p~g~---~~~~~~g~T~~dla~~i~~ 30 (73)
T 2kmm_A 2 EVMVFTPKGE---IKRLPQGATALDFAYSLHS 30 (73)
T ss_dssp CEEEECTTCC---EEEECTTCBHHHHHHHHCS
T ss_pred eEEEEcCCCC---EEEcCCCCcHHHHHHHHhh
Confidence 3566677883 3588889999999888743
No 164
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=52.63 E-value=13 Score=26.70 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=34.2
Q ss_pred eEEeCC----cccHHHHHHHHHhcCCCCCccCCCC---CCceEEEecCeecCC--CCccccCCCCCCCC
Q 032784 21 PFRYSS----ASTVDMLKQRIVSDWPKGKTIVPKA---VTEIKLISSGKILEN--NKTVGQCKIPYGEV 80 (133)
Q Consensus 21 ~~~v~p----~~TV~~lK~~I~~~wP~~~~~~gi~---~~~qrLIy~Gk~L~D--~~tLsd~~I~~g~~ 80 (133)
.+.|++ .+|..+|=+.|..+. +.+ ..++ .+++||||-=-. +| +++|+++||..|+|
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~--gy~-~eiSV~~~~~~rLLyD~Df-DDnl~k~L~dLgv~~gsf 73 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKY--SYP-QDISLLDASNQRLLFDYDF-EDLNDRTLSEINLGNGSI 73 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHH--TCC-SSEEEEETTTTEEEEETTB-CTTTTSBTTTTTCCTTCE
T ss_pred EEEeCcccccccCHHHHHHHHHHhc--CCC-CcEEEEecCCCCeEeCCCc-cccccCcHHHcCcCCCcE
Confidence 456664 368888777776661 110 1122 235677765533 33 47999999999984
No 165
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=52.13 E-value=25 Score=23.67 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=42.0
Q ss_pred CceEEEEEEeCCCCe---eeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCe-ec-CCCCccccC
Q 032784 4 EELIDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-IL-ENNKTVGQC 73 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~---i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk-~L-~D~~tLsd~ 73 (133)
.++|.|+|+-.++-. -..+.|+.+.|++++-..|..+ ..++ .+=| |-+. .+ .-++++++.
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkr-------L~l~--alFl-yvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQ-------LHSD--SLFV-YVNSAFSPNPDESVIDL 75 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHH-------HTCS--SCEE-EEEEEECCCTTSBHHHH
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHh-------cCCc--eEEE-EECCcccCChhhHHHHH
Confidence 348999999875521 1247899999999999999999 5555 5555 5555 54 556677654
No 166
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=50.90 E-value=49 Score=21.57 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=21.1
Q ss_pred CCeeeeEEeC--CcccHHHHHHHHHhcCCC
Q 032784 16 GSDIGPFRYS--SASTVDMLKQRIVSDWPK 43 (133)
Q Consensus 16 G~~i~~~~v~--p~~TV~~lK~~I~~~wP~ 43 (133)
|.+-..+++. +..||.+|.+.+.++.|.
T Consensus 18 g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~ 47 (99)
T 2qjl_A 18 KQRVHKIKMDKEDPVTVGDLIDHIVSTMIN 47 (99)
T ss_dssp TCCEEEEEECSCSCCBHHHHHHHHHHHTCS
T ss_pred CCcEEEEecCCCCCCcHHHHHHHHHHHCch
Confidence 5444456666 678999999999999664
No 167
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=48.75 E-value=12 Score=23.53 Aligned_cols=43 Identities=9% Similarity=0.154 Sum_probs=30.3
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.+++++..||.+|.+.+ +++.+...+..+|+....+ .-+++|+
T Consensus 24 ~~~~~~~~Tv~dLl~~L-----------~~~~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV-----------GFNTESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCCSSCCHHHHHHTT-----------TCSSCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EEECCCCCcHHHHHHHh-----------CCCCcCEEEEECCEECCCC-----CCcCCCC
Confidence 45777788999987654 3445566778899988654 4566777
No 168
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=48.36 E-value=55 Score=21.44 Aligned_cols=51 Identities=8% Similarity=0.133 Sum_probs=34.9
Q ss_pred CCCCeeeeEEeCCc-ccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~p~-~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
++|+ +++++.. .||.+|.+.+ +++++...+..+|+++..+ ...+..+++||
T Consensus 25 vNGe---~~el~~~~~Tv~dLL~~L-----------~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 25 LNGK---DVKWKKDTGTIQDLLASY-----------QLENKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp ETTE---EECCSSSCCBHHHHHHHT-----------TCTTSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred ECCE---EEECCCCCCcHHHHHHHh-----------CCCCCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 4672 4577777 8999988765 3445667788899988532 23345688888
No 169
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=46.91 E-value=61 Score=21.56 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=41.5
Q ss_pred CceEEEEEEeCCCCee---eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec-CCCCccccC
Q 032784 4 EELIDIKFRLYDGSDI---GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQC 73 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i---~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L-~D~~tLsd~ 73 (133)
.++|.|+|+-.++-.+ ..+.|+.+.|++++-..|..+ ..+ +.+=|.-+...+ .-++++++.
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkr-------L~l--~alFlyVNn~f~Ps~d~~~~~L 70 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRR-------LKM--DHVYCYINNSFAPSPQQNIGEL 70 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHH-------HTC--SCCEEEETTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHh-------hCC--ceEEEEECCccCCCcccHHHHH
Confidence 5689999988766222 136899999999999999999 555 555554455554 445666653
No 170
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=46.44 E-value=67 Score=21.91 Aligned_cols=46 Identities=7% Similarity=-0.161 Sum_probs=37.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI 58 (133)
.+=.|++.|+++ +...+++-|++|+.+-=.+..+. .++.++..-..
T Consensus 12 ~~~~irvhLPNq-QrT~V~VrpG~tlrdaL~KaLk~-------R~L~pe~C~Vy 57 (96)
T 3ny5_A 12 QKPIVRVFLPNK-QRTVVPARCGVTVRDSLKKALMM-------RGLIPECCAVY 57 (96)
T ss_dssp SSCEEEEEETTT-EEEEEECCTTCBHHHHHHHHHHT-------TTCCGGGEEEE
T ss_pred hhCEEEEECCCC-ceEEEEecCCcCHHHHHHHHHHH-------cCCChHHeEEE
Confidence 344688999999 66689999999999998888888 78877665543
No 171
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=44.82 E-value=27 Score=24.11 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=42.6
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE---ecCe--ecCCCC
Q 032784 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGK--ILENNK 68 (133)
Q Consensus 3 ~~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI---y~Gk--~L~D~~ 68 (133)
+.|+|..++...+.+-+ ++.+..+.|+.+|+..++++ .+..-+++.|+ ++|. +|++++
T Consensus 6 ~sD~i~~~Vy~~Dhsy~-tvr~~v~~sa~eIl~~va~k-------l~~~~e~l~Lv~v~ssGEk~~lqp~d 68 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYV-SVKAKVSSIAQEILKVVAEK-------IQYAEEDLALVAITFSGEKHELQPND 68 (104)
T ss_dssp CSSCCCEEEECSSSCEE-EECCCTTCBSHHHHHHHHHH-------HTSCGGGEEEEEECSSCCCCBCCTTS
T ss_pred CCCceEEEEEeccCceE-EEEEeccchHHHHHHHHHHH-------hcCCccceEEEEEccCCcEeecCCcc
Confidence 35678888888888554 57888899999999999999 66655567774 4665 344443
No 172
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=42.75 E-value=37 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=31.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
..+.++|.+.+|.. ..++|++.+|+.+|-+.|..+
T Consensus 262 ~~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V~~~ 296 (655)
T 3pvl_A 262 KPIMLPVTFMDGTT-KTLLTDSATTARELCNALADK 296 (655)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHHH
T ss_pred CceEEEEEecCCce-EEEEEccCCcHHHHHHHHHHH
Confidence 36789999999954 579999999999999999999
No 173
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=41.72 E-value=53 Score=24.61 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=28.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc
Q 032784 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 6 ~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
.+.|+|-..+| ....+.|++++|+.+|-+.+.++
T Consensus 34 k~~v~v~~~d~-~~k~i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 34 KLVVKVHMDDS-STKSLMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp EEEEEEECTTS-CEEEEEEETTCBHHHHHHHHHHH
T ss_pred ceEEEEEcCCC-ceEEEEeCCCCcHHHHHHHHHHH
Confidence 56677877888 44579999999999999999888
No 174
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=40.52 E-value=65 Score=21.88 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=42.3
Q ss_pred ceEEEEEEeCCCCeee-----eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec-CCCCccccC
Q 032784 5 ELIDIKFRLYDGSDIG-----PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQC 73 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~-----~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L-~D~~tLsd~ 73 (133)
+.|-|.+....+.++- -+-|..++||+++...|..+ ..+++++--.+|-+..+ .-+.++++.
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~-------l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKR-------IHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHH-------TTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHH-------hcCCCCCcEEEEECCEecCccChHHHH
Confidence 5677777766544321 25788899999999999988 66776664445655544 556677665
No 175
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=39.12 E-value=84 Score=20.91 Aligned_cols=58 Identities=9% Similarity=0.146 Sum_probs=43.6
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecC--eecCCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~G--k~L~D~~tLsd~~I~~g~ 79 (133)
.+-++.++|+.+|-++++..= =+.-..+-|-.-.|..+.| +.|..+.|+++.||..-+
T Consensus 16 LV~VDt~dTmdqVA~kvA~Hs-VGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHS-INRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTT-BTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred EEEecCCCcHHHHHHHHhhhh-cceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence 478899999999999998761 0000112333458888999 999999999999998766
No 176
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=38.46 E-value=66 Score=22.39 Aligned_cols=42 Identities=5% Similarity=-0.102 Sum_probs=34.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL 57 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrL 57 (133)
.|++.|.++ +...++|-|++|+.+-=.+..+. .++.++..-.
T Consensus 20 ~ir~hLPNq-QrT~V~VrpG~tlrdaL~KaLk~-------R~L~pe~C~V 61 (107)
T 1rrb_A 20 TIRVFLPNK-QRTVVNVRNGMSLHDCLMKALKV-------RGLQPECCAV 61 (107)
T ss_dssp EEEEECTTT-CCEEEECCTTCBHHHHHHHHHHH-------HTCCTTTEEE
T ss_pred eEEEECCCC-CeEEEEecCCcCHHHHHHHHHHH-------cCCCHHHcee
Confidence 588889999 55679999999999998888888 7887765544
No 177
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=38.14 E-value=72 Score=19.84 Aligned_cols=62 Identities=11% Similarity=0.148 Sum_probs=38.4
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCc-----cCCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEE
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKT-----IVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~-----~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv 90 (133)
.++++...||.+|.+.+..+.|.-.. ..| -.....+..+|+......- .+.-+++|+ .+.++
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g-~~~~v~v~vN~~~v~~~~~-~~~~l~~gD------~V~i~ 84 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNN-LFKNVIILVNGNNITSMKG-LDTEIKDDD------KIDLF 84 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSC-STTTCEEEESSSBGGGTCS-SSCBCCTTC------EEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccC-cCcceEEEECCEEccccCC-CCcCCCCCC------EEEEe
Confidence 35677678999999999888541100 012 1245677888887752211 234578898 66665
No 178
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=37.93 E-value=65 Score=19.31 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=34.1
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
++|+ ++++....||.+|.+.+. ++.....+..+|+.+..+ ...+.-+++|+
T Consensus 5 vNg~---~~~~~~~~tv~~ll~~l~-----------~~~~~v~vavN~~~v~~~-~~~~~~L~~gD 55 (66)
T 1f0z_A 5 FNDQ---AMQCAAGQTVHELLEQLD-----------QRQAGAALAINQQIVPRE-QWAQHIVQDGD 55 (66)
T ss_dssp ESSC---EECCCTTCCHHHHHHHHT-----------CCCSSEEEEETTEEECHH-HHTTCCCCTTE
T ss_pred ECCE---EEEcCCCCcHHHHHHHcC-----------CCCCCEEEEECCEECCch-hcCCcCCCCCC
Confidence 4673 357788899999988763 335666778888887532 12234577888
No 179
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=37.20 E-value=75 Score=19.83 Aligned_cols=50 Identities=8% Similarity=0.128 Sum_probs=34.3
Q ss_pred CCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
++|+ ++++ +..||.+|-+. .++++...-+-.+|+++.-+ ..++.-+++||
T Consensus 5 vNG~---~~e~-~~~Tl~~LL~~-----------l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD 54 (73)
T 2kl0_A 5 INGE---QREV-QSASVAALMTE-----------LDCTGGHFAVALNYDVVPRG-KWDETPVTAGD 54 (73)
T ss_dssp ETTE---EECC-CCSBHHHHHHH-----------TTCCSSSCEEEESSSEECHH-HHTTCBCCTTC
T ss_pred ECCE---EEEc-CCCcHHHHHHH-----------cCCCCCcEEEEECCEECChH-HcCcccCCCCC
Confidence 4673 3466 67899987654 45667777788999988422 33456788999
No 180
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=35.61 E-value=98 Score=20.67 Aligned_cols=43 Identities=7% Similarity=-0.114 Sum_probs=36.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI 58 (133)
.|++.++++ +...+++-|++|+.+-=.+..+. .++.++.....
T Consensus 9 ~irvhLPn~-QrT~V~VrpG~tlrdaL~KaLk~-------R~L~pe~C~Vy 51 (86)
T 1wxm_A 9 TVKVYLPNK-QRTVVTVRDGMSVYDSLDKALKV-------RGLNQDCCVVY 51 (86)
T ss_dssp EEEEECSSS-CEEEEECCSSCBSHHHHHHHHHT-------TTCCSSSEEEE
T ss_pred eEEEECCCC-CeEEEEecCCcCHHHHHHHHHHH-------cCCCHHHeEEE
Confidence 578889999 55679999999999999999998 88887766554
No 181
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=35.42 E-value=96 Score=25.46 Aligned_cols=61 Identities=13% Similarity=0.129 Sum_probs=41.3
Q ss_pred ceEEEEEEe------CCCCeeeeEEeCCcccHHHHHHHHHh--cCCCCCccCCC---CCCceEE--Ee--cC--eecCCC
Q 032784 5 ELIDIKFRL------YDGSDIGPFRYSSASTVDMLKQRIVS--DWPKGKTIVPK---AVTEIKL--IS--SG--KILENN 67 (133)
Q Consensus 5 ~~i~l~~rl------~~G~~i~~~~v~p~~TV~~lK~~I~~--~wP~~~~~~gi---~~~~qrL--Iy--~G--k~L~D~ 67 (133)
+.=-++++. .+| .+..+.+++++||.+|=..|.+ + .|+ .++..=| .+ .| +.|+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~~-~~k~v~~d~~ttV~dVi~~i~~~~k-------iG~~i~~~~~FgL~~~~~~~~~~~wL~~~ 91 (392)
T 4eku_A 20 DVRILKVCFYSNSFNPGK-NFKLVKCTVQTEIREIITSILLSGR-------IGPNIRLAECYGLRLKHMKSDEIHWLHPQ 91 (392)
T ss_dssp GEEEEEEEECCSSSCGGG-EEEEEEEETTCBHHHHHHHHHHTTT-------TCSSCCCGGGEEEEEEESSSCCEEEECTT
T ss_pred eeeeEEEEecccccCCCC-CeEEEEeCCCCcHHHHHHHHHHHhh-------cCCCcCccceEEEEEEECCCCceEECCCC
Confidence 334567777 677 6668999999999999999984 4 443 2334444 33 12 567888
Q ss_pred CccccC
Q 032784 68 KTVGQC 73 (133)
Q Consensus 68 ~tLsd~ 73 (133)
++|.+.
T Consensus 92 ~~l~~v 97 (392)
T 4eku_A 92 MTVGEV 97 (392)
T ss_dssp SBHHHH
T ss_pred CcHHHH
Confidence 888763
No 182
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=33.29 E-value=43 Score=24.43 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=40.0
Q ss_pred CcccHHHHHHHHHhcCCCCC--cc-----------C--CCCCCceEEEecCeec-CCCCccccCCCCCCCCCCceEEEEE
Q 032784 26 SASTVDMLKQRIVSDWPKGK--TI-----------V--PKAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHV 89 (133)
Q Consensus 26 p~~TV~~lK~~I~~~wP~~~--~~-----------~--gi~~~~qrLIy~Gk~L-~D~~tLsd~~I~~g~~~~~~~tlhl 89 (133)
.+.|..+|-..|.+.-|... +. . ..-..++=-++.|+.- +|++||.+++..-|+ -|-+
T Consensus 62 ~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGD------yidv 135 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGD------YLDI 135 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTC------EEEE
T ss_pred CCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCC------EEEE
Confidence 67899999999988866431 10 0 0111122234555544 678999999999999 4666
Q ss_pred EecCC
Q 032784 90 VVQPS 94 (133)
Q Consensus 90 v~~~~ 94 (133)
.+-++
T Consensus 136 aI~pP 140 (143)
T 4a6q_A 136 AITPP 140 (143)
T ss_dssp EEECG
T ss_pred EEeCC
Confidence 65444
No 183
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=32.13 E-value=78 Score=21.75 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=41.8
Q ss_pred ceEEEEEEeCCCCee-----eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec-CCCCccccC
Q 032784 5 ELIDIKFRLYDGSDI-----GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQC 73 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i-----~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L-~D~~tLsd~ 73 (133)
+.|-|.+....+.++ .-+.|..+.||+++...|..+ ..+++++--.+|-+..+ .-+.++++.
T Consensus 27 ~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~-------l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 27 DRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKR-------IQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHH-------HTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHh-------hcCCCCCcEEEEECCEecCccchHHHH
Confidence 567777776655332 135788899999999988888 66666664445655544 566677765
No 184
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=32.06 E-value=42 Score=23.62 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=44.9
Q ss_pred CceEEEEEEeCCCC----eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 4 EELIDIKFRLYDGS----DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 4 ~~~i~l~~rl~~G~----~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
++-|.|++++...+ .+ ++.++.++= . .-.+|=-+||.+-|++.+|+..=++|.+..|.
T Consensus 26 defv~I~I~~p~ir~~a~~~-ei~vd~~~F---------~--------F~~~PYyLRL~lP~~vved~~~~A~YD~d~g~ 87 (115)
T 3eud_A 26 EEFIFLKIFISNIRFSAVGL-EIIIQENMI---------I--------FHLSPYYLRLRFPHELIDDERSTAQYDSKDEC 87 (115)
T ss_dssp SSEEEEEEECCSCCCCSSSC-EEEEETTEE---------E--------EEETTEEEEEECSSCEECSTTCEEEEETTTTE
T ss_pred CCEEEEEEEcCceecccCcc-EEEEeCCEE---------E--------EecCCeEEEEecCcceecCCCcceEEeCCCcE
Confidence 67888889887552 22 344544420 0 23578889999999999999988899998776
Q ss_pred CCCceEEEEEE
Q 032784 80 VPGGVIIMHVV 90 (133)
Q Consensus 80 ~~~~~~tlhlv 90 (133)
+++++-
T Consensus 88 -----~~v~lp 93 (115)
T 3eud_A 88 -----INVKVA 93 (115)
T ss_dssp -----EEEEEE
T ss_pred -----EEEEEc
Confidence 356553
No 185
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=31.65 E-value=84 Score=18.69 Aligned_cols=51 Identities=10% Similarity=0.174 Sum_probs=33.8
Q ss_pred eCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 13 l~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
.++|+ ++++ +..||.+|.+.+. ++.....+..+|+++..+ .-.+.-+++|+
T Consensus 3 ~vNg~---~~~~-~~~tv~~ll~~l~-----------~~~~~v~vavN~~~v~~~-~~~~~~L~dgD 53 (64)
T 2cu3_A 3 WLNGE---PRPL-EGKTLKEVLEEMG-----------VELKGVAVLLNEEAFLGL-EVPDRPLRDGD 53 (64)
T ss_dssp EETTE---EECC-TTCCHHHHHHHHT-----------BCGGGEEEEETTEEEEGG-GCCCCCCCTTC
T ss_pred EECCE---EEEc-CCCcHHHHHHHcC-----------CCCCcEEEEECCEECCcc-ccCCcCCCCCC
Confidence 35673 3466 6789999988763 235667778888887532 22345678888
No 186
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=31.22 E-value=1e+02 Score=21.66 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=30.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhc
Q 032784 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 4 ~~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
.|+|..++...+-+-+ ++.+..+.|+.+|+..++++
T Consensus 7 ~Dei~~~VY~~Dhsy~-tvr~~v~~sa~eIl~~va~k 42 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYV-TIRSRLSASVQDILGSVTEK 42 (120)
T ss_dssp CCCEEECEECTTSCCC-CEEECTTCCHHHHHHHHHHH
T ss_pred CCcEEEEEEeccCceE-EEEEeccccHHHHHHHHHHH
Confidence 4678888888887554 67999999999999999988
No 187
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=30.64 E-value=56 Score=20.76 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=33.9
Q ss_pred CCCCeeeeEEeC--CcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 14 YDGSDIGPFRYS--SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 14 ~~G~~i~~~~v~--p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
++|+ +++++ ...||.+|-+.+.-.| +...-+-.+|+++.-+ ..++..+++||
T Consensus 5 vNGe---~~e~~~~~~~Tl~~LL~~l~~~~----------~~~vAVavNg~iVpr~-~~~~~~L~dGD 58 (78)
T 2k5p_A 5 VNGK---PSTVDGAESLNVTELLSALKVAQ----------AEYVTVELNGEVLERE-AFDATTVKDGD 58 (78)
T ss_dssp ETTE---EEECSSCSCEEHHHHHHHHTCSC----------TTTCCEEETTEECCTT-HHHHCEECSSB
T ss_pred ECCE---EEEcCCCCCCcHHHHHHHcCCCC----------CCcEEEEECCEECChH-HcCcccCCCCC
Confidence 4673 45777 7789999877654332 4444567899988533 34455677888
No 188
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=30.42 E-value=1.2e+02 Score=21.32 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=44.0
Q ss_pred ceEEEEEEeCCCCe-e-----eeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEE-ecCeec-CCCCccccC
Q 032784 5 ELIDIKFRLYDGSD-I-----GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKIL-ENNKTVGQC 73 (133)
Q Consensus 5 ~~i~l~~rl~~G~~-i-----~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLI-y~Gk~L-~D~~tLsd~ 73 (133)
+.|-|.+.-..+.+ + .-+-|..+.||+++...|..+ ..+++++-=.+ |.++.+ .-+.++++.
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkr-------L~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRR-------LQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHH-------HTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHH-------hCCCCCceEEEEEECCccCCccchHHHH
Confidence 45666664443433 2 236789999999999999999 77888776666 877766 556677665
No 189
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=30.36 E-value=1.4e+02 Score=21.01 Aligned_cols=59 Identities=7% Similarity=0.054 Sum_probs=44.7
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCC-ccCCCCCCceEEEecCeec--CCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGK-TIVPKAVTEIKLISSGKIL--ENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~-~~~gi~~~~qrLIy~Gk~L--~D~~tLsd~~I~~g~ 79 (133)
.+-+.|+++-+++-+++-..+=.-. +-..|+=+...-.-+|+.. +.+++|++.||.-.+
T Consensus 41 ~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs 102 (119)
T 3u52_E 41 ALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKS 102 (119)
T ss_dssp EEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTE
T ss_pred eecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchh
Confidence 4788999999999888765542221 1245666677788899988 677899999999888
No 190
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=29.97 E-value=69 Score=21.80 Aligned_cols=23 Identities=22% Similarity=0.067 Sum_probs=21.2
Q ss_pred eeeeEEeCCcccHHHHHHHHHhc
Q 032784 18 DIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 18 ~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
++..+-|.++.+..+|.++|.++
T Consensus 23 d~~~i~V~~~i~f~~L~~kI~~K 45 (98)
T 1q1o_A 23 EIFTLLVEKVWNFDDLIMAINSK 45 (98)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHH
Confidence 67789999999999999999988
No 191
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=28.50 E-value=1.1e+02 Score=19.22 Aligned_cols=64 Identities=8% Similarity=0.070 Sum_probs=39.0
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCcc------CCCCCCceEEEecCeecCCCCccccCCCCCCCCCCceEEEEEEec
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTI------VPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~------~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~~~~~~~tlhlv~~ 92 (133)
.++. +..||.+|.+.+.+++|.-.+. .+--....++.-+|+...+..-+ +.-+++|+ .+.++-.
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gD------eV~i~Pp 89 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGD------SVTILPA 89 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTC------EEEEEEC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCC------EEEEECC
Confidence 3564 4579999999999997642110 11112246677788877543222 35578898 6766543
No 192
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=27.64 E-value=40 Score=27.18 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=38.8
Q ss_pred EEEEeCCCC---eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCC-CceEEEe--c--Ce--ecCCCCcccc
Q 032784 9 IKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAV-TEIKLIS--S--GK--ILENNKTVGQ 72 (133)
Q Consensus 9 l~~rl~~G~---~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~-~~qrLIy--~--Gk--~L~D~~tLsd 72 (133)
++|.+.+|. ....+.+++++|+.+|-+.|.++ .|+.. +..=|.+ . |. .|+.+++|++
T Consensus 10 l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~-------lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 10 FHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDC-------HKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp ECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHH-------TTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHH-------cCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 456777772 25679999999999999999999 77632 2223333 2 22 4677777764
No 193
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=24.93 E-value=1.1e+02 Score=19.57 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=34.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeecCCCCccccCCCCCCC
Q 032784 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (133)
Q Consensus 8 ~l~~rl~~G~~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L~D~~tLsd~~I~~g~ 79 (133)
+|.+.+.+| ++ +++..+.|+.++-..|... .+ -...--..+|+...=+ +.+++|+
T Consensus 7 ~i~v~tP~G-~~--~~lp~GaT~~D~A~~Ih~~-------lg--~~~v~AkVNG~~v~L~-----~~L~~gd 61 (78)
T 3hvz_A 7 EVFVFTPKG-DV--ISLPIGSTVIDFAYAIHSA-------VG--NRMIGAKVDGRIVPID-----YKVKTGE 61 (78)
T ss_dssp EEEEECTTS-CE--EEEETTCBHHHHHHHHCHH-------HH--HTEEEEEETTEEECTT-----CBCCTTC
T ss_pred eEEEECCCC-CE--EEecCCCCHHHHHHHhhhh-------hh--cceEEEEECCEEcCCC-----cccCCCC
Confidence 456677999 43 5899999999998877644 11 1122223467665433 4456777
No 194
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=23.92 E-value=53 Score=21.23 Aligned_cols=23 Identities=22% Similarity=0.067 Sum_probs=20.6
Q ss_pred eeeeEEeCCcccHHHHHHHHHhc
Q 032784 18 DIGPFRYSSASTVDMLKQRIVSD 40 (133)
Q Consensus 18 ~i~~~~v~p~~TV~~lK~~I~~~ 40 (133)
++..+.++++.+..+|.++|.++
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~k 24 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSK 24 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999
No 195
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=23.08 E-value=1.3e+02 Score=19.33 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=22.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcccHHHHHH
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQ 35 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p~~TV~~lK~ 35 (133)
+.+.|+|...+|.. ..++++++.|+.+.=.
T Consensus 2 ~~~~v~~~~~~g~~-~~~~~~~g~tlL~a~~ 31 (103)
T 2wlb_A 2 TGIKVFFVTPEGRE-IMIEGNEGDSILDLAH 31 (103)
T ss_dssp CCEEEEEECTTCCE-EEEEECTTCBHHHHHH
T ss_pred CceEEEEEeCCCCE-EEEEECCCCHHHHHHH
Confidence 45678887678844 3689999999987643
No 196
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=22.69 E-value=1.7e+02 Score=19.36 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=32.1
Q ss_pred eeeeEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceE-EEecCee
Q 032784 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIK-LISSGKI 63 (133)
Q Consensus 18 ~i~~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qr-LIy~Gk~ 63 (133)
+.+.|.|++..|=.++|+-|+.- .++.+...+ ++..|+.
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~l-------f~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKL-------FEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHH-------SCCCCCEEEEEEECCCB
T ss_pred CEEEEEECCCCCHHHHHHHHHHH-------cCCceEEEEEEEeCCce
Confidence 45789999999999999999999 788887774 4666664
No 197
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=22.47 E-value=84 Score=22.12 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=34.4
Q ss_pred EEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec-CCCCccccC
Q 032784 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQC 73 (133)
Q Consensus 22 ~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L-~D~~tLsd~ 73 (133)
+-|..+.||+++...|..+ ..+++++-=.+|-+..+ .-+.|+++.
T Consensus 57 flVp~~~tv~qf~~~IRkr-------l~L~~~~alFl~Vnn~lPs~s~~m~~l 102 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKR-------IHLRPEDALFFFVNNVIPPTSATMGSL 102 (125)
T ss_dssp EEEETTSBHHHHHHHHHHH-------TTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEcCCCCEeeeehhhhHhh-------cCCCccccEEEEECCccCCccchHHHH
Confidence 5789999999999999999 77888776566654444 556677654
No 198
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=22.41 E-value=49 Score=28.36 Aligned_cols=52 Identities=4% Similarity=0.040 Sum_probs=41.0
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEec------CeecC-CCCccccC--CCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS------GKILE-NNKTVGQC--KIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~------Gk~L~-D~~tLsd~--~I~~g~ 79 (133)
.+-|+.+++|.++-..|.+. .|+|++.--.+|. ...|+ -+.|++++ .|.+|+
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~-------~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~Gd 210 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDR-------AGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGD 210 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHH-------HTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTE
T ss_pred EEEECCCCCHHHHHHHHHHH-------cCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCC
Confidence 46788999999999999999 6776765544453 34577 57899999 999998
No 199
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=22.03 E-value=51 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=24.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCC--cccHHHHHH
Q 032784 5 ELIDIKFRLYDGSDIGPFRYSS--ASTVDMLKQ 35 (133)
Q Consensus 5 ~~i~l~~rl~~G~~i~~~~v~p--~~TV~~lK~ 35 (133)
.-+.++|.+.+|.. ..++|++ ++|+.+|-+
T Consensus 4 ~~~~i~V~l~dg~~-~~~~i~~~~~tt~~el~e 35 (322)
T 4dxa_B 4 EFEKVRIYRMDGSY-RSVELKHGNNTTVQQIME 35 (322)
T ss_dssp -CCEEEEECTTSCE-EEEECTTGGGCCHHHHHT
T ss_pred CceEEEEEEECCcE-EEEEEcCCCCCcHHHHHH
Confidence 34678999999965 4789998 899999954
No 200
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=21.88 E-value=1.2e+02 Score=21.07 Aligned_cols=45 Identities=11% Similarity=0.038 Sum_probs=33.7
Q ss_pred EEeCCcccHHHHHHHHHhcCCCCCccCCCCCCceEEEecCeec-CCCCccccC
Q 032784 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQC 73 (133)
Q Consensus 22 ~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~~qrLIy~Gk~L-~D~~tLsd~ 73 (133)
+-|..+.||+++...|..+ ..+++++--.+|-+..+ .-+.++++.
T Consensus 51 flVp~~~tv~qf~~~iRkr-------l~l~~~~alFl~Vn~~~p~~~~~m~~l 96 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKR-------IMLPPEKAIFIFVNDTLPPTAALMSAI 96 (118)
T ss_dssp EEEETTSBHHHHHHHHHHH-------TTCCTTCCEEEEBTTBCCCTTSBHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH-------hCcCCCccEEEEECCccCCccchHHHH
Confidence 6789999999999999999 77777776566644444 555666654
No 201
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=21.25 E-value=2.7e+02 Score=24.43 Aligned_cols=54 Identities=7% Similarity=0.103 Sum_probs=35.9
Q ss_pred eEEeCCcccHHHHHHHHHhcCCCCCccCCCCCC--------ceEEEecCe--e----c--CCCCccccCCCCCCC
Q 032784 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT--------EIKLISSGK--I----L--ENNKTVGQCKIPYGE 79 (133)
Q Consensus 21 ~~~v~p~~TV~~lK~~I~~~wP~~~~~~gi~~~--------~qrLIy~Gk--~----L--~D~~tLsd~~I~~g~ 79 (133)
.+.++++.|+.++-+.+..+-. .++... ..+++|... . . .-+++|++.+|.+|+
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 784 (805)
T 2nvu_B 715 NIQFSPSAKLQEVLDYLTNSAS-----LQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQ 784 (805)
T ss_dssp EEEECTTSBHHHHHHHHHHCTT-----TCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTC
T ss_pred EEEECCcChHHHHHHHHHhhhc-----cCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCC
Confidence 4788888999998888888610 112221 257788642 1 1 125789999999988
No 202
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=20.15 E-value=2.1e+02 Score=19.29 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=42.9
Q ss_pred CCCCceEEEEEEe----CCCCeeeeEEeCC----cccHHHHHHHHHhcCCCCCcc----CC---CCCCceEEEecCeecC
Q 032784 1 MPDEELIDIKFRL----YDGSDIGPFRYSS----ASTVDMLKQRIVSDWPKGKTI----VP---KAVTEIKLISSGKILE 65 (133)
Q Consensus 1 ~~~~~~i~l~~rl----~~G~~i~~~~v~p----~~TV~~lK~~I~~~wP~~~~~----~g---i~~~~qrLIy~Gk~L~ 65 (133)
|+...+|.|+|-- .-|+. ..++++. ..||.+|=+.+.+..|+.++. .+ +-+. +-++-+|+-.+
T Consensus 1 ~~~~m~v~V~f~g~l~~l~g~~-~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpg-IlVLVNg~d~e 78 (110)
T 2k9x_A 1 MSNHNHITVQFAGGCELLFAKQ-TSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPG-ILVLVNSCDAE 78 (110)
T ss_dssp CCCSSCCEEEEESSCGGGTTSC-SEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTT-EEEEESSSBHH
T ss_pred CCCccEEEEEEEecHHHHhCCe-EEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCCCcccCCC-eEEEECCeeee
Confidence 4444556666542 34443 3566663 249999999999998877431 12 3333 33444554322
Q ss_pred CCCccccCCCCCCC
Q 032784 66 NNKTVGQCKIPYGE 79 (133)
Q Consensus 66 D~~tLsd~~I~~g~ 79 (133)
-..- .+|.+++||
T Consensus 79 ~l~g-ldt~L~dgD 91 (110)
T 2k9x_A 79 VVGG-MDYVLNDGD 91 (110)
T ss_dssp HHTS-SCCCCCSSC
T ss_pred ccCC-cccCCCCcC
Confidence 1001 247789999
Done!