BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032785
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 167 bits (423), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 100/158 (63%), Gaps = 28/158 (17%)
Query: 2 SGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFP 33
S GIA RL +ERKAWRK+HP T WEGG F
Sbjct: 1 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 34 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 93
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+L
Sbjct: 61 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 120
Query: 94 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
L++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 121 LNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 158
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 100/158 (63%), Gaps = 28/158 (17%)
Query: 2 SGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFP 33
S GIA RL +ERKAWRK+HP T WEGG F
Sbjct: 2 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 34 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 93
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+L
Sbjct: 62 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 94 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
L++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 122 LNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 159
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 167 bits (422), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 101/159 (63%), Gaps = 28/159 (17%)
Query: 1 MSGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYF 32
++ GIA RL +ERKAWRK+HP T WEGG F
Sbjct: 1 LNMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 60
Query: 33 PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 92
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+
Sbjct: 61 KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 120
Query: 93 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
LL++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 121 LLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 159
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 166 bits (421), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 100/158 (63%), Gaps = 28/158 (17%)
Query: 2 SGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFP 33
S GIA RL +ERKAWRK+HP T WEGG F
Sbjct: 5 SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 34 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 93
L + F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+L
Sbjct: 65 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 124
Query: 94 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
L++PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 125 LNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 162
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 166 bits (420), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 99/156 (63%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLT 35
GIA RL +ERKAWRK+HP T WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
+PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 166 bits (420), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 99/156 (63%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLT 35
GIA RL +ERKAWRK+HP T WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
+PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 164 bits (416), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 100/156 (64%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHP----------------------------HTDWEGGYFPLT 35
+ + RL EERK WR++HP T WEGG + LT
Sbjct: 8 SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F E+YP++PPKC+F FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQDLLD
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 127
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
PN A PAQT+ Y +F +D EY++RVR QA++ P
Sbjct: 128 DPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 98/156 (62%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLT 35
GIA RL +ERKAWRK+HP T WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
+PN PAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 125 EPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 164 bits (414), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 98/156 (62%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLT 35
GIA RL +ERKAWRK+HP T WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F +DYPS PPKCKF FHP VYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
+PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 163 bits (413), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 98/156 (62%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLT 35
GIA RL +ERKAWRK+HP T WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F +DYPS PPKCKF FHPNVYPSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
+PN PAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 125 EPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 163 bits (412), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 98/156 (62%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLT 35
GIA RL +ERKAWRK+HP T WEGG F L
Sbjct: 5 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F +DYPS PPKCKF FHPNV PSGTVCLSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 65 MLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
+PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 98/156 (62%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLT 35
GIA RL +ERKAWRK+HP T WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F +DYPS PPKCKF FHPNVYPSGTV LSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
+PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 161 bits (408), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 98/156 (62%), Gaps = 28/156 (17%)
Query: 4 GGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLT 35
GIA RL +ERKAWRK+HP T WEGG F L
Sbjct: 2 SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 36 LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95
+ F +DYPS PPKCKF FHPNVYPSGTV LSIL ED WRPAIT+KQIL+GIQ+LL+
Sbjct: 62 MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 96 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131
+PN DPAQ + Y ++ Q+ EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFAP 157
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 98/156 (62%), Gaps = 28/156 (17%)
Query: 2 SGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFP 33
S + RL EERK WRK+HP T+W GG +P
Sbjct: 2 SMSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
Query: 34 LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 93
+T+ + +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED WRPAIT+KQI++G+QDL
Sbjct: 62 ITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDL 121
Query: 94 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
LD PNP PAQ ++ F ++ AEY ++V QAKQY
Sbjct: 122 LDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 157
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 96/148 (64%), Gaps = 28/148 (18%)
Query: 10 RLTEERKAWRKNHPH----------------------------TDWEGGYFPLTLYFSED 41
RL EERK WRK+HP T+W GG +P+T+ + +
Sbjct: 8 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 42 YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 101
YPSKPPK KFP GF+HPNVYPSGT+CLSILNED WRPAIT+KQI++G+QDLLD PNP
Sbjct: 68 YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNS 127
Query: 102 PAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
PAQ ++ F ++ AEY ++V QAKQY
Sbjct: 128 PAQEPAWRSFSRNKAEYDKKVLLQAKQY 155
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVK 84
T W+GG F L+L FSEDYP+KPP +F FHPN+Y G++CL IL N W P V
Sbjct: 46 TPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVA 103
Query: 85 QILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128
IL IQ LL PNP PA ++ +++ + EY RRVR +Q
Sbjct: 104 AILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQ 147
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 24 HTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITV 83
T +E G F L+L F+E+YP+KPP KF FHPNVY G++CL IL N W P V
Sbjct: 45 ETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDV 102
Query: 84 KQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128
IL IQ LLD+PNP PA + QL+ ++ EY++RV+Q +Q
Sbjct: 103 AAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 147
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 24 HTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITV 83
T +E G F L+L F+E+YP+KPP KF FHPNVY G++CL IL N W P V
Sbjct: 48 ETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDV 105
Query: 84 KQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128
IL IQ LLD+PNP PA + QL+ ++ EY++RV+Q +Q
Sbjct: 106 AAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 150
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVK 84
T +E G F L + FSE+YP+KPP +F FHPNVY G++CL IL N W P V
Sbjct: 46 TPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVS 103
Query: 85 QILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128
IL IQ LLD+PNP PA + QL+ ++ EY++RV +Q
Sbjct: 104 SILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQ 147
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 95.9 bits (237), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVK 84
T +E G F L L F E+YP+KPP KF FHPNVY +G +CL IL N W P V
Sbjct: 46 TPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ--NRWTPTYDVA 103
Query: 85 QILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128
IL IQ L + PNPA PA + LF ++Y +RV++ ++
Sbjct: 104 SILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
P + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL + W PA+T
Sbjct: 47 PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALT 104
Query: 83 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
V ++L+ I LL PNP DP D Q++ D +Y R R+ ++Y
Sbjct: 105 VSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 151
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
P + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T
Sbjct: 59 PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALT 116
Query: 83 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
V ++L+ I LL PNP DP D Q++ D +Y R R+ ++Y
Sbjct: 117 VSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 163
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
P + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T
Sbjct: 43 PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALT 100
Query: 83 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
V ++L+ I LL PNP DP D Q++ D +Y R R+ ++Y
Sbjct: 101 VSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 147
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+TV ++
Sbjct: 50 YQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKV 107
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP D ++ D +Y R R+ ++Y
Sbjct: 108 LLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQKY 150
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
P + ++GG F LT++F DYP KPPK F +HPN+ +G++ L IL W PA+T
Sbjct: 47 PDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ--WSPALT 104
Query: 83 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
V ++L+ I LL PNP DP D Q++ D +Y R R+ ++Y
Sbjct: 105 VSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 151
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 50 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 107
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 108 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 150
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
P + +EGG F L + FS DYP KPPK F +H N+ G +CL IL ++ W PA+T
Sbjct: 43 PGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALT 100
Query: 83 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ ++L+ I LL NPADP ++ + AE+ R RQ K+Y
Sbjct: 101 ISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 147
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 63 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 120
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 121 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+ GG F L+++F DYP KPPK F +HPN+ +G++CL IL + W PA+T+ ++
Sbjct: 45 YAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKV 102
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + ++ D + Y+ R+ ++Y
Sbjct: 103 LLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKY 145
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 105 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 55 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 112
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 113 LLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKY 155
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 105 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 105 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 102
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 103 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
P + ++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T
Sbjct: 44 PESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALT 101
Query: 83 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ ++L+ I LL PNP DP + +++ D Y + R+ ++Y
Sbjct: 102 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 148
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 55 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 112
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 113 LLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 155
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WGPALTISKV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 105 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+ GG F L ++F DYP KPPK F +HPN+ G +CL IL + W PA+T+ ++
Sbjct: 65 YSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ--WSPALTISKV 122
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + L+ D Y + R+ +++Y
Sbjct: 123 LLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKY 165
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 105 LLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 147
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 44 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 101
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 102 LLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 144
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL IL W PA+T+ ++
Sbjct: 53 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKV 110
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 111 LLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 153
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
P + +EGG F L + F+ +YP KPPK F +H N+ G +CL IL ++ W PA+T
Sbjct: 88 PGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALT 145
Query: 83 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ ++L+ I LL NPADP ++ + AE+ R RQ K+Y
Sbjct: 146 ISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 192
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++CL L W PA+T+ ++
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ--WSPALTISKV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 105 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 11/117 (9%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE--------- 73
P T +EGG+F L F DYP KPPK KF +HPN+ G VC+SIL++
Sbjct: 44 PDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYE 103
Query: 74 --DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128
+ W P TV+ IL+ + +L PN PA D ++ ++ AE+K++V Q ++
Sbjct: 104 RPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRR 160
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++ L IL W PA+T+ ++
Sbjct: 48 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALTISKV 105
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 106 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 148
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 82.4 bits (202), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++ L IL + W PA+T+ ++
Sbjct: 47 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALTISKV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 105 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++ L IL W PA+T+ ++
Sbjct: 63 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ--WSPALTISKV 120
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 121 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+ GG F L+++F DYP KPPK F +HPN+ +G +CL IL + W PA+T+ ++
Sbjct: 46 YAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKV 103
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL NP DP + ++ D +Y+ R+ K+Y
Sbjct: 104 LLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKY 146
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++ L IL W PA+T+ ++
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALTISKV 102
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 103 LLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 145
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVK 84
T +EGG + L L+ E YP +PPK +F +HPN+ G +CL IL + W PA+ ++
Sbjct: 43 TPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIR 100
Query: 85 QILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+L+ IQ LL P P DP + + F QD + + RQ K Y
Sbjct: 101 TVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVK 84
T +EGG + L L+ E YP +PPK +F +HPN+ G +CL IL + W PA+ ++
Sbjct: 43 TPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIR 100
Query: 85 QILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+L+ IQ LL P P DP + + F QD + + RQ K Y
Sbjct: 101 TVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+E G F L LY +DYP + PK +F +HPN+ G +CL +L W PA+ ++ +
Sbjct: 49 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTV 106
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + +I++ K + R+ K Y
Sbjct: 107 LLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 149
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+E G F L LY +DYP + PK +F +HPN+ G +CL +L W PA+ ++ +
Sbjct: 47 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + +I++ K + R+ K Y
Sbjct: 105 LLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HPN+ +G++ L IL W PA+ + ++
Sbjct: 44 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALKISKV 101
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 102 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 144
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F LT++F DYP KPPK F +HP + +G++ L IL W PA+T+ ++
Sbjct: 45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRSQ--WSPALTISKV 102
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP DP + +++ D +Y R R+ ++Y
Sbjct: 103 LLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+EGG F L L+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +
Sbjct: 50 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTV 107
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 108 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 150
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+EGG F L L+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +
Sbjct: 49 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTV 106
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 107 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 149
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+EGG F L L+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +
Sbjct: 47 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 105 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 147
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+EGG F L L+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +
Sbjct: 52 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTV 109
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 110 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 152
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+EGG F L L+ E+YP PK +F +HPNV G +CL IL + W PA+ ++ +
Sbjct: 45 FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK--DKWSPALQIRTV 102
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + + + A+ R + Y
Sbjct: 103 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 145
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+E G F L LY +DYP + PK +F +HPN+ G + L +L W PA+ ++ +
Sbjct: 47 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVLK--TNWSPALQIRTV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + +I++ K + R+ K Y
Sbjct: 105 LLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 5 GIARGRLTEER----KAWRKNHPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60
GI G + EE +A T +E G FP L F DYP PPK +F FHPN+
Sbjct: 26 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 85
Query: 61 YPSGTVCLSIL-----------NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQ 109
YP G VC+SIL + W P +V++IL+ + +L +PN A D +
Sbjct: 86 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 145
Query: 110 LFIQDPAEYKRRVRQQAKQ 128
++ D ++ + +Q ++
Sbjct: 146 MWRDDREQFYKIAKQIVQK 164
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 5 GIARGRLTEER----KAWRKNHPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60
GI G + EE +A T +E G FP L F DYP PPK +F FHPN+
Sbjct: 28 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 87
Query: 61 YPSGTVCLSIL-----------NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQ 109
YP G VC+SIL + W P +V++IL+ + +L +PN A D +
Sbjct: 88 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 147
Query: 110 LFIQDPAEYKRRVRQQAKQ 128
++ D ++ + +Q ++
Sbjct: 148 MWRDDREQFYKIAKQIVQK 166
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 5 GIARGRLTEER----KAWRKNHPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60
GI G + EE +A T +E G FP L F DYP PPK +F FHPN+
Sbjct: 25 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 84
Query: 61 YPSGTVCLSIL-----------NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQ 109
YP G VC+SIL + W P +V++IL+ + +L +PN A D +
Sbjct: 85 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 144
Query: 110 LFIQDPAEYKRRVRQQAKQ 128
++ D ++ + +Q ++
Sbjct: 145 MWRDDREQFYKIAKQIVQK 163
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 15/139 (10%)
Query: 5 GIARGRLTEER----KAWRKNHPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60
GI G + EE +A T +E G FP L F DYP PPK +F FHPN+
Sbjct: 22 GIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81
Query: 61 YPSGTVCLSIL-----------NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQ 109
YP G VC+SIL + W P +V++IL+ + +L +PN A D +
Sbjct: 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASK 141
Query: 110 LFIQDPAEYKRRVRQQAKQ 128
++ D ++ + +Q ++
Sbjct: 142 MWRDDREQFYKIAKQIVQK 160
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++GG F L ++F DYP K P+ F +HPN+ +G +CL IL + W PA+T+ ++
Sbjct: 48 YQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQ--WSPALTLSRV 105
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ I LL PNP+DP + + + +++ R+ + Y
Sbjct: 106 LLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMY 148
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 3/106 (2%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITV 83
T +EGG+F L + DYP PPK KF +HPN+ +G +CL +L N W PA+T+
Sbjct: 65 TPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLK--NEWSPALTI 122
Query: 84 KQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ L+ IQ LL P P DP + +++ ++ A + + K +
Sbjct: 123 RTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTF 168
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 61/112 (54%), Gaps = 12/112 (10%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE--------- 73
P T +EGG F L F +DYP +PPK KF +HPNV +G VC+SIL+E
Sbjct: 58 PDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYE 117
Query: 74 --DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD-PAEYKRRV 122
+ W P TV+ I++ + +L PN PA D + + +D E+KR+V
Sbjct: 118 KPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 169
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAI 81
P T +EGG F + + +YP KPPK +F +HPN+ +G +CL IL N W P I
Sbjct: 43 PGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR--NAWSPVI 100
Query: 82 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 120
T+K L+ +Q LL P P DP + Q +++D + +
Sbjct: 101 TLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 75.9 bits (185), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAI 81
P T +EGG F + + +YP KPPK +F +HPN+ +G +CL IL N W P I
Sbjct: 42 PGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSPVI 99
Query: 82 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
T+K L+ +Q LL P P DP + Q +++D + + + Y
Sbjct: 100 TLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLY 147
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 30 GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 89
G L F+E YP +PPK + FHPN+ G VCL+IL ED W PA+ ++ I+ G
Sbjct: 80 GSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED--WSPALDLQSIITG 137
Query: 90 IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 123
+ L +PNP DP D +L + E+ VR
Sbjct: 138 LLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 11/112 (9%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE--------- 73
P T + G F L F +DYP PPK F HPN+YP+G VC+SIL+
Sbjct: 45 PDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYE 104
Query: 74 --DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 123
+ W P +V++IL+ + +L +PN A D L+ + E++R+V+
Sbjct: 105 LAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
+E G F L LY +DYP + PK +F +HP + G + L +L W PA+ ++ +
Sbjct: 47 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVLK--TNWSPALQIRTV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
L+ IQ LL PNP DP D + +I++ K + R+ K Y
Sbjct: 105 LLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLY 147
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITV 83
T +EGG+F L + DYP PPK KF +HPN+ +G +CL IL + W PA+T+
Sbjct: 87 TPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKHE--WSPALTI 144
Query: 84 KQILVGIQDLLDQPNPADPAQTDGYQLFIQD 114
+ L+ IQ +L P P DP + ++ I++
Sbjct: 145 RTALLSIQAMLADPVPTDPQDAEVAKMMIEN 175
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVK 84
T + GG F + L +D+P+ PPK F FHPNV +G +C+++L D W + ++
Sbjct: 55 TPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRD--WTAELGIR 112
Query: 85 QILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 123
+L+ I+ LL PNP + +L +++ EY R R
Sbjct: 113 HVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARAR 151
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVK 84
T +E + LTL F DYP KPP KF +HPNV SG +CL IL E+ W + V+
Sbjct: 51 TVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVR 108
Query: 85 QILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 127
IL+ +Q LL +PN A P ++ + EYK+ + ++ K
Sbjct: 109 TILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYK 150
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN---------- 72
P+T +EGGYF L F DYP PP +F +HPN+Y +G VC+SIL+
Sbjct: 48 PNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGE 107
Query: 73 -EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 111
W P V+ IL+ + LL++PN PA D ++
Sbjct: 108 LPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 24 HTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNGWRPAI 81
+T +E G F L + E YP +PP+ +F +HPN+ +G +CL +L WRP++
Sbjct: 45 NTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSL 104
Query: 82 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ +L IQ L+ +PNP DP D F + + + RQ +++
Sbjct: 105 NIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKH 152
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN---------- 72
P+T +EGGYF L F DYP PP +F +HPN+Y +G VC+SIL+
Sbjct: 45 PNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGE 104
Query: 73 -EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 111
W P V+ IL+ + LL++PN PA D ++
Sbjct: 105 LPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++ G F + + YP PPK K +HPN+ G VCL+IL ED W+P +T+ I
Sbjct: 48 YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVCLNILRED--WKPVLTINSI 105
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 127
+ G+Q L +PNP DP + ++ + +++ V++ +
Sbjct: 106 IYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXR 146
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITV 83
T +EGG + + + +DYP P F HPNV SG+VCL ++N+ W P ++
Sbjct: 41 TAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ--TWTPLYSL 98
Query: 84 KQIL-VGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ V + LL PNP+DP +D L ++D Y+ +V++ K Y
Sbjct: 99 VNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLY 145
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++ G F + + F +YP KPPK F +HPN+ G VCL +++ +N W+PA Q+
Sbjct: 48 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQV 106
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ + L++ P P P + D + + +D ++ + + K+Y
Sbjct: 107 IQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 149
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++ G F + + YP PPK K +HPN+ G V L+IL ED W+P +T+ I
Sbjct: 68 YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED--WKPVLTINSI 125
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 127
+ G+Q L +PNP DP + ++ + +++ V++ +
Sbjct: 126 IYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 166
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 86
++ G F + + F +YP KPPK F +HPN+ G VCL +++ +N W+PA Q+
Sbjct: 46 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQV 104
Query: 87 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ + L++ P P P + D + + +D ++ + + K+Y
Sbjct: 105 IQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 5 GIARGRLTEERKAWR---KNHPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61
GI ++E+ W + ++ W+G F LT++F+ +Y PP KF FHPNV
Sbjct: 42 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101
Query: 62 P-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 120
P +G C+ L+ W T+ IL+ +Q +L P +P + ++ ++D + Y+
Sbjct: 102 PHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRT 161
Query: 121 RVR 123
+R
Sbjct: 162 ILR 164
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 32 FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQ 91
F L + F +YP KPP KF +HPNV +G +CL I++ +N W+P Q+L +
Sbjct: 53 FNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALN 111
Query: 92 DLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 124
L+++PN +P + D L Q+P +++ +
Sbjct: 112 VLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 144
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 32 FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQ 91
F L + F +YP KPP KF +HPNV +G +CL I++ +N W+P Q+L +
Sbjct: 50 FNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALN 108
Query: 92 DLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 124
L+++PN +P + D L Q+P +++ +
Sbjct: 109 VLVNRPNIREPLRMDLADLLTQNPELFRKNAEE 141
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 65.9 bits (159), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 4/107 (3%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITV 83
T +EGG + + + + YP K P F FHPN+ SGTVCL ++N+ W +
Sbjct: 63 TPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTALYDL 120
Query: 84 KQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
I + LL PNP DP D +++ P EYK+++++ ++Y
Sbjct: 121 TNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKY 167
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 82
++GG F + Y PPK K +HPN+ +G +CLS+L E + GW P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 83 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+K ++ G+ L D N DP + + ++D +++ +V K+Y
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 82
++GG F + Y PPK K +HPN+ +G +CLS+L E + GW P T
Sbjct: 58 YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 83 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+K ++ G+ L D N DP + + ++D +++ +V K+Y
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVK 84
T +E + L+L F YP P KF +HPNV G + L IL E W V+
Sbjct: 72 TVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVR 129
Query: 85 QILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 124
IL+ IQ LL +PN P T +L+ ++P +K+ +++
Sbjct: 130 TILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAI 81
P T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W A+
Sbjct: 64 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAM 121
Query: 82 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 122 TLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 169
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAI 81
P T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W A+
Sbjct: 49 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAM 106
Query: 82 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 107 TLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 154
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAI 81
P T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W A+
Sbjct: 48 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAM 105
Query: 82 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 106 TLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAI 81
P T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W A+
Sbjct: 51 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAM 108
Query: 82 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 109 TLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAI 81
P T +EGG + L + E YP PPK +F +HPN+ +G +CL IL + W A+
Sbjct: 100 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAM 157
Query: 82 TVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
T++ +L+ +Q LL P DP + Q+P +K+ R A Y
Sbjct: 158 TLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITV 83
T +E G + L + DYP K P F HPNV SG+VCL ++N+ W P +
Sbjct: 50 TPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQT--WTPMYQL 107
Query: 84 KQIL-VGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129
+ I V + LL PNP+DP L D + +R+ +
Sbjct: 108 ENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTH 154
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF--HPNVYPSGTVCLSILNEDNGWRPA 80
P T +EG F L FS YP P+ F HP+VY +G +CLSIL ED W PA
Sbjct: 64 PGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPA 121
Query: 81 ITVKQILVGIQDLLD 95
++V+ + + I +L
Sbjct: 122 LSVQSVCLSIISMLS 136
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 52.4 bits (124), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNG--- 76
T + G F +YF +DYPS PP F+PN+Y G VCLSILN +G
Sbjct: 122 TPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPE 181
Query: 77 --WRPAI-TVKQILVGIQDLL 94
W P + Q+LV +Q L+
Sbjct: 182 EKWNPQTSSFLQVLVSVQSLI 202
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 24 HTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSILNEDNGWRPAIT 82
+T + + L + F +DYP KPP F Q H +VY +G +CLS+L +D + P+++
Sbjct: 47 NTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD--YNPSLS 104
Query: 83 VKQILVGIQDLLDQ 96
+ +++ I +L
Sbjct: 105 ISGLVLSIISMLSS 118
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 24 HTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSILNEDNGWRPAIT 82
+T + + + + F ++YP KPP F Q H +VY +G +CLS+L +D + P+++
Sbjct: 61 NTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD--YNPSLS 118
Query: 83 VKQILVGIQDLLDQ 96
+ +++ I +L
Sbjct: 119 ISGLILSIISMLSS 132
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILN-EDNGWRPAI 81
T +EGGY+ L F ++P KPP P G F N +CLSI + + W PA
Sbjct: 56 TPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT----RLCLSITDFHPDTWNPAW 111
Query: 82 TVKQILVGIQDLLDQPNPA 100
+V IL G+ + + P
Sbjct: 112 SVSTILTGLLSFMVEKGPT 130
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 22 HPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAI 81
P T +E + LT++ ++YP PP KF V G V + L+ W
Sbjct: 68 QPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNY 127
Query: 82 TVKQILVGI-QDLLDQPNPADPAQTDG 107
T++ IL+ + Q++L N P +G
Sbjct: 128 TIETILISLRQEMLSSANKRLPQPNEG 154
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 22 HPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAI 81
P T +E + LT++ ++YP PP KF V G V + L+ W
Sbjct: 64 QPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNY 123
Query: 82 TVKQILVGI-QDLLDQPNPADPAQTDG 107
T++ IL+ + Q++L N P +G
Sbjct: 124 TIETILISLRQEMLSSANKRLPQPNEG 150
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILNEDNGWRPAIT 82
T +E F + + YP PPK F Q H NV +G +CL+IL + W P
Sbjct: 60 TPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNILKPEE-WTPVWD 118
Query: 83 VKQILVGIQDLLDQPNPADPAQTD-GYQLFIQDPAEYKRRVR 123
+ + + LL +P P D G + D + Y+ V+
Sbjct: 119 LLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 29 GGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILV 88
G + L++ FS+DYP +PP +F + P V G +C ++N+ W P ++
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND--FWTPDQHASDVIK 125
Query: 89 GIQDLL------DQPNPADPAQTDGYQLFIQDPAEYKRRVR 123
+ D + + + +P + F QD A RR R
Sbjct: 126 LVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRRGR 166
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILNEDNGWRPAIT 82
T +E F + + YP PPK F Q H NV +G +CL+IL + W P
Sbjct: 60 TPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEE-WTPVWD 118
Query: 83 VKQILVGIQDLLDQPNPADPAQTD-GYQLFIQDPAEYKRRVR 123
+ + + LL +P P D G + D + Y+ V+
Sbjct: 119 LLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIVK 160
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILNEDNGWRPAIT 82
T +E F + + YP PPK F Q H NV +G +CL+IL + W P
Sbjct: 60 TPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEE-WTPVWD 118
Query: 83 VKQILVGIQDLLDQPNPADPAQTD-GYQLFIQDPAEYKRRVR 123
+ + + LL +P P D G + D + Y+ V+
Sbjct: 119 LLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 160
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
PH++ E + L++ +YP PPK F P V P+ + + W+ A T
Sbjct: 50 PHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYT 109
Query: 83 VKQILVGIQDLLDQP 97
++ +L+ ++ + P
Sbjct: 110 METLLLDLRKEMATP 124
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 23 PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAIT 82
PH++ E + L++ +YP PPK F P V P+ + + W+ A T
Sbjct: 49 PHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYT 108
Query: 83 VKQILVGIQDLLDQP 97
++ +L+ ++ + P
Sbjct: 109 METLLLDLRKEMATP 123
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9H|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysylsulfamoyl Adenosine
pdb|3E9I|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3E9I|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With L-Lysine Hydroxamate-Amp
pdb|3A74|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|B Chain B, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|C Chain C, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
pdb|3A74|D Chain D, Lysyl-Trna Synthetase From Bacillus Stearothermophilus
Complexed With Diadenosine Tetraphosphate (Ap4a)
Length = 493
Score = 28.9 bits (63), Expect = 0.96, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 94 LDQPNPADPAQTDGYQLFI------------QDPAEYKRRVRQQAKQ 128
L + NP DP TD ++LFI DP + ++R +Q K+
Sbjct: 389 LAKKNPDDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKE 435
>pdb|3S6N|2 Chain 2, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
Length = 280
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 76 GWRPAITVKQILVGIQDLLDQPNPADPAQ-TDGYQLFI--QDPAEYKRRVRQQAKQYPPV 132
W PA + +++L+ + P +P T+G+ + + P EY RRV+ +A Q P V
Sbjct: 13 AWVPAES------AVEELMPRLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDV 66
Query: 133 I 133
+
Sbjct: 67 V 67
>pdb|4JA0|A Chain A, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|B Chain B, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|C Chain C, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
pdb|4JA0|D Chain D, Crystal Structure Of The Invertebrate Bi-functional Purine
Biosynthesis Enzyme Paics At 2.8 A Resolution
Length = 425
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 46 PPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 94
PP K Q + PSG C +++ D+ A+ QI +G+QD L
Sbjct: 353 PPSDKLVQDIWSSLSVPSGLGCATVIYPDSA---ALMAAQI-IGLQDYL 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,064,830
Number of Sequences: 62578
Number of extensions: 218032
Number of successful extensions: 561
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 351
Number of HSP's gapped (non-prelim): 131
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)