Query 032785
Match_columns 133
No_of_seqs 145 out of 1124
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 4.6E-47 9.9E-52 263.8 14.1 125 5-131 4-152 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 4.3E-46 9.4E-51 254.2 12.6 123 7-131 2-147 (148)
3 PTZ00390 ubiquitin-conjugating 100.0 1.1E-43 2.4E-48 248.6 15.0 123 7-131 3-148 (152)
4 KOG0419 Ubiquitin-protein liga 100.0 1E-43 2.2E-48 237.1 13.2 127 1-131 1-150 (152)
5 PLN00172 ubiquitin conjugating 100.0 7.1E-43 1.5E-47 243.4 14.7 122 7-130 2-146 (147)
6 KOG0424 Ubiquitin-protein liga 100.0 1.5E-41 3.3E-46 229.6 13.8 129 1-131 1-157 (158)
7 KOG0425 Ubiquitin-protein liga 100.0 1.2E-40 2.5E-45 228.2 13.5 129 1-130 1-164 (171)
8 KOG0418 Ubiquitin-protein liga 100.0 1.6E-39 3.4E-44 228.6 11.6 126 1-131 1-153 (200)
9 KOG0422 Ubiquitin-protein liga 100.0 1.8E-38 3.8E-43 213.7 13.1 124 7-131 3-149 (153)
10 KOG0426 Ubiquitin-protein liga 100.0 3.7E-38 8E-43 210.7 12.4 127 1-129 1-162 (165)
11 PF00179 UQ_con: Ubiquitin-con 100.0 1.3E-37 2.9E-42 215.1 13.2 116 10-126 1-140 (140)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 5E-37 1.1E-41 212.5 12.9 117 9-126 2-141 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 1.9E-36 4.2E-41 210.5 14.2 121 9-130 1-145 (145)
14 KOG0416 Ubiquitin-protein liga 100.0 1.2E-34 2.5E-39 201.1 9.2 125 6-132 3-149 (189)
15 KOG0421 Ubiquitin-protein liga 100.0 3.7E-34 8.1E-39 193.8 10.4 122 5-129 28-172 (175)
16 KOG0420 Ubiquitin-protein liga 100.0 7.9E-34 1.7E-38 197.3 10.1 124 5-130 27-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 4.1E-31 8.9E-36 184.1 7.9 124 7-132 11-157 (223)
18 KOG0427 Ubiquitin conjugating 99.9 2.7E-25 5.9E-30 148.7 8.9 98 5-104 14-135 (161)
19 KOG0894 Ubiquitin-protein liga 99.9 4.5E-24 9.7E-29 153.5 12.3 99 1-104 1-127 (244)
20 KOG0429 Ubiquitin-conjugating 99.9 2.4E-21 5.2E-26 139.9 10.8 105 25-131 60-170 (258)
21 KOG0428 Non-canonical ubiquiti 99.7 2.5E-17 5.5E-22 120.9 8.7 93 4-98 9-125 (314)
22 KOG0895 Ubiquitin-conjugating 99.6 5.7E-15 1.2E-19 125.8 8.4 79 25-103 893-980 (1101)
23 KOG0895 Ubiquitin-conjugating 99.3 9.7E-12 2.1E-16 106.4 7.8 91 6-96 282-404 (1101)
24 KOG0896 Ubiquitin-conjugating 99.2 2.1E-11 4.6E-16 82.3 5.7 71 25-95 51-122 (138)
25 PF14461 Prok-E2_B: Prokaryoti 98.8 3.3E-08 7.2E-13 67.8 8.0 66 28-95 34-105 (133)
26 KOG0897 Predicted ubiquitin-co 98.7 7E-08 1.5E-12 63.6 5.7 87 34-126 15-110 (122)
27 PF05743 UEV: UEV domain; Int 98.4 4.1E-07 9E-12 61.5 4.8 68 25-95 41-116 (121)
28 KOG2391 Vacuolar sorting prote 98.0 5.7E-05 1.2E-09 58.6 8.4 69 25-96 61-137 (365)
29 PF08694 UFC1: Ubiquitin-fold 97.1 0.00051 1.1E-08 47.3 2.9 81 6-87 24-135 (161)
30 PF14457 Prok-E2_A: Prokaryoti 96.3 0.007 1.5E-07 42.9 4.2 61 34-95 57-125 (162)
31 KOG3357 Uncharacterized conser 95.5 0.018 3.9E-07 39.2 3.3 79 7-86 28-137 (167)
32 smart00591 RWD domain in RING 94.5 0.12 2.6E-06 33.1 5.1 23 31-53 42-64 (107)
33 PF05773 RWD: RWD domain; Int 94.3 0.049 1.1E-06 35.2 2.9 28 27-54 46-73 (113)
34 PF14462 Prok-E2_E: Prokaryoti 94.0 0.33 7.2E-06 32.8 6.4 71 25-95 37-120 (122)
35 PF06113 BRE: Brain and reprod 86.4 2.6 5.7E-05 33.2 5.9 60 25-92 60-122 (333)
36 PF14460 Prok-E2_D: Prokaryoti 86.2 1.3 2.8E-05 31.6 4.0 36 54-94 91-129 (175)
37 PF09765 WD-3: WD-repeat regio 79.1 2 4.4E-05 33.2 2.8 71 8-94 101-186 (291)
38 KOG4018 Uncharacterized conser 78.5 6.7 0.00015 29.0 5.2 21 31-51 50-70 (215)
39 KOG0309 Conserved WD40 repeat- 70.9 10 0.00022 33.4 5.1 30 25-54 460-491 (1081)
40 cd00421 intradiol_dioxygenase 70.4 6.5 0.00014 27.1 3.4 25 28-52 64-89 (146)
41 smart00340 HALZ homeobox assoc 69.1 6.5 0.00014 21.5 2.4 18 7-24 20-37 (44)
42 cd03457 intradiol_dioxygenase_ 66.1 8.6 0.00019 27.8 3.4 25 28-52 85-109 (188)
43 KOG0177 20S proteasome, regula 63.5 6.8 0.00015 28.5 2.4 80 7-95 80-165 (200)
44 TIGR03737 PRTRC_B PRTRC system 63.1 14 0.00031 27.7 4.1 40 54-99 132-175 (228)
45 cd03459 3,4-PCD Protocatechuat 61.2 12 0.00027 26.2 3.3 25 28-52 71-100 (158)
46 TIGR02423 protocat_alph protoc 48.1 25 0.00054 25.6 3.2 25 28-52 95-124 (193)
47 COG3657 Uncharacterized protei 47.6 27 0.00058 22.6 2.9 42 6-52 23-66 (100)
48 cd03463 3,4-PCD_alpha Protocat 46.4 28 0.00061 25.1 3.3 25 28-52 91-120 (185)
49 cd07981 TAF12 TATA Binding Pro 45.3 48 0.001 19.9 3.7 43 89-131 6-48 (72)
50 TIGR02683 upstrm_HI1419 probab 44.3 66 0.0014 20.2 4.5 37 6-42 20-58 (95)
51 PF07598 DUF1561: Protein of u 43.9 46 0.00099 28.4 4.4 80 13-98 402-508 (632)
52 KOG1047 Bifunctional leukotrie 43.5 32 0.0007 29.2 3.5 29 25-54 248-279 (613)
53 PF12652 CotJB: CotJB protein; 41.9 67 0.0015 19.9 4.0 32 100-131 24-55 (78)
54 KOG0662 Cyclin-dependent kinas 38.5 38 0.00082 25.1 2.9 58 44-101 167-226 (292)
55 PF13950 Epimerase_Csub: UDP-g 38.4 33 0.00073 20.0 2.2 19 76-94 37-55 (62)
56 PF06113 BRE: Brain and reprod 36.2 46 0.001 26.4 3.2 22 32-53 308-329 (333)
57 TIGR02439 catechol_proteo cate 35.4 50 0.0011 25.6 3.3 25 28-52 179-221 (285)
58 PF12018 DUF3508: Domain of un 35.3 34 0.00075 26.2 2.4 30 102-131 238-267 (281)
59 cd03461 1,2-HQD Hydroxyquinol 33.2 56 0.0012 25.2 3.2 25 28-52 171-213 (277)
60 KOG1814 Predicted E3 ubiquitin 32.2 1.2E+02 0.0026 25.0 5.0 15 10-24 8-22 (445)
61 PF06675 DUF1177: Protein of u 31.5 43 0.00093 25.6 2.3 41 10-50 155-208 (276)
62 TIGR02438 catachol_actin catec 31.4 64 0.0014 25.0 3.3 25 28-52 183-225 (281)
63 KOG4445 Uncharacterized conser 31.2 68 0.0015 25.3 3.4 25 30-54 45-69 (368)
64 cd03464 3,4-PCD_beta Protocate 31.1 66 0.0014 23.9 3.2 25 28-52 121-152 (220)
65 COG2819 Predicted hydrolase of 31.0 76 0.0016 24.3 3.6 29 25-53 16-46 (264)
66 cd03460 1,2-CTD Catechol 1,2 d 30.7 66 0.0014 24.9 3.3 25 28-52 175-217 (282)
67 TIGR02422 protocat_beta protoc 29.2 74 0.0016 23.7 3.2 25 28-52 116-147 (220)
68 PF12065 DUF3545: Protein of u 28.9 40 0.00086 19.8 1.4 14 8-21 36-49 (59)
69 PF03847 TFIID_20kDa: Transcri 28.1 1.4E+02 0.003 17.8 3.8 42 89-130 4-45 (68)
70 TIGR02465 chlorocat_1_2 chloro 27.6 84 0.0018 23.8 3.3 25 28-52 149-191 (246)
71 PF11333 DUF3135: Protein of u 27.2 1.5E+02 0.0033 18.4 4.0 25 104-128 6-30 (83)
72 cd05845 Ig2_L1-CAM_like Second 27.0 1.5E+02 0.0032 18.9 3.9 27 26-54 15-41 (95)
73 KOG3696 Aspartyl beta-hydroxyl 26.1 39 0.00084 26.6 1.3 23 41-63 304-326 (334)
74 smart00545 JmjN Small domain f 24.3 1.1E+02 0.0023 16.6 2.5 19 113-131 13-31 (42)
75 PF02563 Poly_export: Polysacc 22.9 1.1E+02 0.0023 18.6 2.7 36 59-96 34-69 (82)
76 PF08405 Calici_PP_N: Viral po 22.8 93 0.002 24.6 2.8 30 103-132 309-338 (358)
77 PF06152 Phage_min_cap2: Phage 22.2 2.1E+02 0.0045 22.9 4.8 46 25-83 240-293 (361)
78 PF00779 BTK: BTK motif; Inte 21.9 34 0.00074 17.4 0.2 11 55-65 2-12 (32)
79 PF09421 FRQ: Frequency clock 21.8 1.2E+02 0.0027 27.6 3.6 32 6-37 142-173 (989)
80 cd03458 Catechol_intradiol_dio 21.7 1.3E+02 0.0028 23.0 3.3 25 28-52 155-197 (256)
81 COG1225 Bcp Peroxiredoxin [Pos 21.5 1.2E+02 0.0027 21.3 3.0 32 58-93 124-155 (157)
82 KOG1976 Inositol polyphosphate 21.2 66 0.0014 25.5 1.7 30 7-45 295-324 (391)
83 PF06097 DUF945: Bacterial pro 20.8 1.9E+02 0.0041 23.1 4.4 54 5-58 27-93 (460)
84 smart00803 TAF TATA box bindin 20.4 1.1E+02 0.0024 18.0 2.2 30 102-131 19-48 (65)
85 cd03462 1,2-CCD chlorocatechol 20.3 1.4E+02 0.003 22.7 3.3 25 28-52 150-192 (247)
86 PF12627 PolyA_pol_RNAbd: Prob 20.1 1.2E+02 0.0026 17.1 2.4 19 5-23 21-39 (64)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-47 Score=263.83 Aligned_cols=125 Identities=47% Similarity=0.838 Sum_probs=120.9
Q ss_pred chHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv 60 (133)
..|.+||++|++.|+++++. |||+||+|++.|.||++||++||+|+|.|+||||||
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV 83 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV 83 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence 33999999999999999854 999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 61 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 61 ~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|++|+||+++|.. +|+|+++|++||.+|+++|.+||.++|+|.||+.+|++|+++|.++||+++++|+.
T Consensus 84 ~~~G~vCLdIL~~--~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 84 DPSGNVCLDILKD--RWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCCCChhHHHhC--CCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 9999999999997 89999999999999999999999999999999999999999999999999999985
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-46 Score=254.25 Aligned_cols=123 Identities=39% Similarity=0.785 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCC
Q 032785 7 ARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 63 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 63 (133)
|.+||.||+++|.++++. ||||||+|++.|.||++||++||+|+|.|+||||||+..
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~ 81 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN 81 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence 567999999999998776 999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 64 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 64 G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|+||+++|.. .|+|+++|.+||++|+++|.+|++++|++.+++.+|+.|+.+|+++||+|+++||.
T Consensus 82 G~IclDILk~--~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 82 GRICLDILKD--QWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred ccchHHhhhc--cCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 9999999999 89999999999999999999999999999999999999999999999999999985
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-43 Score=248.59 Aligned_cols=123 Identities=34% Similarity=0.750 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCC
Q 032785 7 ARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 63 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 63 (133)
+.+||++|++++++.++. |||+||+|+++|.||++||++||+|+|.|++|||||+++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 789999999999988665 999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 64 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 64 G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|.||+++|.. +|+|++++.+||.+|+++|.+|+.++|+|.+||++|++|++.|.++|++|+++||.
T Consensus 83 G~iCl~iL~~--~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 83 GRICLDILKD--KWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CeEECccCcc--cCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999987 89999999999999999999999999999999999999999999999999999986
No 4
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-43 Score=237.08 Aligned_cols=127 Identities=45% Similarity=0.836 Sum_probs=123.2
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 57 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 57 (133)
|| ..|.+||++|++.|+++++. |||+||+|++.|.|+++||.+||.|+|++.+||
T Consensus 1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CC--chHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 78 89999999999999999886 999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 58 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 58 pnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
||||++|.+|+++|.. .|+|.|++.+||.+||+||.+|++++|+|.+||++|++|+.+|.+++++.+.+...
T Consensus 79 PNvya~G~iClDiLqN--rWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~ 150 (152)
T KOG0419|consen 79 PNVYADGSICLDILQN--RWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWS 150 (152)
T ss_pred CCcCCCCcchHHHHhc--CCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhc
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999987654
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=7.1e-43 Score=243.43 Aligned_cols=122 Identities=37% Similarity=0.790 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCC
Q 032785 7 ARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 63 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 63 (133)
|.+||++|+++|+++++. |||+||+|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 468999999999987664 999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 032785 64 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 130 (133)
Q Consensus 64 G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 130 (133)
|.||+++|.. +|+|++++.+||.+|+++|.+|+.++|+|.+|+++|.+|+++|.++||+|+++||
T Consensus 82 G~iCl~il~~--~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILRD--QWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCcC--CCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 9999999987 8999999999999999999999999999999999999999999999999999997
No 6
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-41 Score=229.61 Aligned_cols=129 Identities=68% Similarity=1.220 Sum_probs=125.2
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC----------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEec
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFP 52 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~----------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~ 52 (133)
|| ..|+.||+.|-+.|.++.+. |+||||.|.+++.||++||.+||++.|.
T Consensus 1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 77 78999999999999999876 9999999999999999999999999999
Q ss_pred cCcccccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 53 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 53 t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
+++||||||++|.|||++|+.+.+|+|+.||.+||..||+||..||..+|+|.||..+|.+|+.+|+++||.++++||.
T Consensus 79 ~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 79 PPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999997679999999999999999999999999999999999999999999999999999986
No 7
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-40 Score=228.23 Aligned_cols=129 Identities=36% Similarity=0.698 Sum_probs=120.8
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 56 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 56 (133)
|++ ..|..-|+++|++|++.+.. |+|+||.|+..+.||.+||++||+++|+|++|
T Consensus 1 m~~-~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mw 79 (171)
T KOG0425|consen 1 MTS-SQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMW 79 (171)
T ss_pred Ccc-chhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhc
Confidence 443 34788899999999999875 99999999999999999999999999999999
Q ss_pred cccccCCCceeccCCCC-----------CCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHH
Q 032785 57 HPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQ 125 (133)
Q Consensus 57 Hpnv~~~G~ic~~~l~~-----------~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~ 125 (133)
|||||++|++|+++|.. .+.|.|.+|+++||++|.+||.+||.++|+|-||++.|++|+++|.++|+++
T Consensus 80 HPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~ 159 (171)
T KOG0425|consen 80 HPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRC 159 (171)
T ss_pred CCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHH
Confidence 99999999999999988 3689999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 032785 126 AKQYP 130 (133)
Q Consensus 126 ~~~~a 130 (133)
|++.-
T Consensus 160 vr~s~ 164 (171)
T KOG0425|consen 160 VRRSQ 164 (171)
T ss_pred HHHHH
Confidence 98753
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=228.63 Aligned_cols=126 Identities=33% Similarity=0.644 Sum_probs=121.3
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC--------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccC
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH--------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG 54 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~--------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 54 (133)
|| + |.+||++|++++..++.- ||||||+|.+.|.+|++|||+||+|+|.|+
T Consensus 1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk 77 (200)
T KOG0418|consen 1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK 77 (200)
T ss_pred Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence 77 6 999999999999888742 999999999999999999999999999999
Q ss_pred cccccccC-CCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 55 FFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 55 i~Hpnv~~-~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
||||||++ +|.||+++|.. .|.+++|+.++|++||++|..|++.+|.+...++.|.+|++.|.+.||.|+..||.
T Consensus 78 IwHPnVSs~tGaICLDilkd--~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~ 153 (200)
T KOG0418|consen 78 IWHPNVSSQTGAICLDILKD--QWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAG 153 (200)
T ss_pred eecCCCCcccccchhhhhhc--ccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhC
Confidence 99999986 99999999998 89999999999999999999999999999999999999999999999999999986
No 9
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-38 Score=213.72 Aligned_cols=124 Identities=34% Similarity=0.682 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCC
Q 032785 7 ARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 63 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 63 (133)
|.+||++||.+|+++... .||..|.|+++|.||.+|||+||.|.|.|+|||||||+.
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~ 82 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEK 82 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCC
Confidence 899999999999998765 899999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 64 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 64 G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|.+|+.++.. |+|.|++.+.+||+.|..++.+|+++.|++.|+|..|.+|+..|.++|.++++||+.
T Consensus 83 gqvClPiis~-EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e 149 (153)
T KOG0422|consen 83 GQVCLPIISA-ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE 149 (153)
T ss_pred Cceeeeeeec-ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence 9999999998 599999999999999999999999999999999999999999999999999999986
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-38 Score=210.66 Aligned_cols=127 Identities=38% Similarity=0.744 Sum_probs=121.8
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 56 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 56 (133)
|+ ..|+|||++||++|-.+++. |+|+||.|..+|.||.|||.+||+++|...+|
T Consensus 1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f 78 (165)
T KOG0426|consen 1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF 78 (165)
T ss_pred Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence 67 78999999999999998876 99999999999999999999999999999999
Q ss_pred cccccCCCceeccCCCC-----------CCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHH
Q 032785 57 HPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQ 125 (133)
Q Consensus 57 Hpnv~~~G~ic~~~l~~-----------~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~ 125 (133)
||||+++|+||+++|.. .|.|+|.++++.||+++.+||.+||.++.+|.+|+.++++|+++|++.|+..
T Consensus 79 HPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~l 158 (165)
T KOG0426|consen 79 HPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRL 158 (165)
T ss_pred cCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999976 3689999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 032785 126 AKQY 129 (133)
Q Consensus 126 ~~~~ 129 (133)
++|.
T Consensus 159 vrKt 162 (165)
T KOG0426|consen 159 VRKT 162 (165)
T ss_pred HHHh
Confidence 9874
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.3e-37 Score=215.14 Aligned_cols=116 Identities=42% Similarity=0.851 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCCCc
Q 032785 10 RLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGT 65 (133)
Q Consensus 10 Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~ 65 (133)
||++|++++++.++. |||+||+|+|.|.||++||++||+|+|.|++|||||+.+|.
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999888766 99999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHH
Q 032785 66 VCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA 126 (133)
Q Consensus 66 ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~ 126 (133)
||+++|..+ .|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|.
T Consensus 81 icl~~l~~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPE-SWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTT-TC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcc-cCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999862 599999999999999999999999999999999999999999999999984
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5e-37 Score=212.55 Aligned_cols=117 Identities=43% Similarity=0.877 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCCCc
Q 032785 9 GRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGT 65 (133)
Q Consensus 9 ~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~ 65 (133)
+||++|++++++.++. |||+||+|++.|.||++||++||.|+|.++++||||+.+|.
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 6999999999998764 99999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHH
Q 032785 66 VCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA 126 (133)
Q Consensus 66 ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~ 126 (133)
||++++... .|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++|++|+
T Consensus 82 icl~~l~~~-~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTH-GWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCC-CcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999882 499999999999999999999999999999999999999999999999874
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=1.9e-36 Score=210.48 Aligned_cols=121 Identities=44% Similarity=0.825 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCCC
Q 032785 9 GRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSG 64 (133)
Q Consensus 9 ~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G 64 (133)
+||++|++++++.++. |||+||+|++.|.||++||.+||.|+|.+++|||||+++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999988664 9999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 032785 65 TVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 130 (133)
Q Consensus 65 ~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 130 (133)
.||++.+.. ++|+|++++.+||.+|+++|.+|+.++++|.+|+.+|.+|++.|.++|++++.+|+
T Consensus 81 ~icl~~l~~-~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQ-EKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCC-CCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999983 28999999999999999999999999999999999999999999999999999985
No 14
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=201.13 Aligned_cols=125 Identities=30% Similarity=0.647 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHHhCCCC--------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccC-CC
Q 032785 6 IARGRLTEERKAWRKNHPH--------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SG 64 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~--------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G 64 (133)
.+.|||..|+..|....-. |||+||+|++++.+|++||++.|.|.|+++||||||+. +|
T Consensus 3 ~~~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SG 82 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASG 82 (189)
T ss_pred CcccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccC
Confidence 3678999998888665332 99999999999999999999999999999999999997 99
Q ss_pred ceeccCCCCCCCCCccccHHHHHH-HHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 032785 65 TVCLSILNEDNGWRPAITVKQILV-GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 132 (133)
Q Consensus 65 ~ic~~~l~~~~~W~p~~~i~~il~-~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 132 (133)
.||++.++. .|+|.+.+..|+. -|-.+|..||..+|+|.+||.+|.++++.|.++||+++++||.+
T Consensus 83 sVCLDViNQ--tWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 83 SVCLDVINQ--TWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred ccHHHHHhh--hhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 999999999 9999999999997 67788999999999999999999999999999999999999974
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-34 Score=193.83 Aligned_cols=122 Identities=36% Similarity=0.621 Sum_probs=114.9
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
....+||++|+..|+..... |+|+|-.|++.+.||.+||+.||.|.|+|+.||||||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD 107 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD 107 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc
Confidence 56789999999999877544 9999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~ 129 (133)
..|.||+++|.. .|+..+.+++||++||++|.+||.++|+|..||+++. |.++|.+.+.+.-++.
T Consensus 108 ~~GnIcLDILkd--KWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~~ 172 (175)
T KOG0421|consen 108 LSGNICLDILKD--KWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKEI 172 (175)
T ss_pred ccccchHHHHHH--HHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhcc
Confidence 999999999988 8999999999999999999999999999999999998 8999999998877654
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-34 Score=197.28 Aligned_cols=124 Identities=29% Similarity=0.553 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv 60 (133)
+.|.-||++|+.++...+.. +.|.||.|.|.+.+|+.||+.||+|.++|++|||||
T Consensus 27 s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNI 106 (184)
T KOG0420|consen 27 SAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTITPDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNI 106 (184)
T ss_pred cHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEccCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCc
Confidence 56788999998888654332 889999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 032785 61 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 130 (133)
Q Consensus 61 ~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 130 (133)
|.+|.||+++|.. +|+|+.++.+|+.+|+.+|.+|+.++|+|.+||..+++|++.|+..||.....++
T Consensus 107 d~~GnVCLnILRe--dW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 107 DLDGNVCLNILRE--DWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred CCcchHHHHHHHh--cCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 9999999999998 8999999999999999999999999999999999999999999999999876654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-31 Score=184.07 Aligned_cols=124 Identities=30% Similarity=0.625 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCC
Q 032785 7 ARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 63 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 63 (133)
.++.+.+|++.|...|+. |||++|+|+.++.+..|||.+||+-.|+|+||||||..+
T Consensus 11 vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaN 90 (223)
T KOG0423|consen 11 VIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAAN 90 (223)
T ss_pred HHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccC
Confidence 578899999999999987 999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 032785 64 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 132 (133)
Q Consensus 64 G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 132 (133)
|.||.+.|.. +|+|+..|..||..|+.+|..|++++.+|++|..+..+|.++|.+.||-++.-+|++
T Consensus 91 GEICVNtLKk--DW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 91 GEICVNTLKK--DWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred ceehhhhhhc--ccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9999999999 899999999999999999999999999999999999999999999999999988874
No 18
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-25 Score=148.66 Aligned_cols=98 Identities=32% Similarity=0.702 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHhCCCC----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCc-cccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv~ 61 (133)
..|.+||+||+.+|+.++|. |.|+|..|.+.+.||+.||++.|.|.|..++ .||+|+
T Consensus 14 ~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiY 93 (161)
T KOG0427|consen 14 KIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIY 93 (161)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCcee
Confidence 67999999999999999987 9999999999999999999999999999875 799999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcC-CCCCCCCC
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ-PNPADPAQ 104 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~-p~~~~p~n 104 (133)
.+|.||+++|.. +|+|++++.+|.++|.+||.. .....|.+
T Consensus 94 SNGHICL~iL~d--~WsPAmsv~SvClSIlSMLSSs~eKqrP~D 135 (161)
T KOG0427|consen 94 SNGHICLDILYD--SWSPAMSVQSVCLSILSMLSSSKEKQRPTD 135 (161)
T ss_pred cCCeEEEEeecc--cCCcchhhHHHHHHHHHHHccCccccCCCc
Confidence 999999999999 899999999999999999954 33344443
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.5e-24 Score=153.47 Aligned_cols=99 Identities=31% Similarity=0.560 Sum_probs=86.6
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccC--c
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--F 55 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~--i 55 (133)
|++ ..|.+||+|||+.|+++|.. |||+||.|+.+|.||.+||++||.|+++|+ .
T Consensus 1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR 79 (244)
T KOG0894|consen 1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR 79 (244)
T ss_pred Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence 553 78999999999999999887 999999999999999999999999999985 5
Q ss_pred ccccccCCCceeccCCCC-CCCCCccccHHHHHHHHHHhhcC--CCCCCCCC
Q 032785 56 FHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQ--PNPADPAQ 104 (133)
Q Consensus 56 ~Hpnv~~~G~ic~~~l~~-~~~W~p~~~i~~il~~i~~~l~~--p~~~~p~n 104 (133)
|-+| .++|+++.+. .+.|+|+|++.+||.+|.++|.+ |...+...
T Consensus 80 Fktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGSI~t 127 (244)
T KOG0894|consen 80 FKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGSIET 127 (244)
T ss_pred eecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCcccc
Confidence 6666 8999999887 56899999999999999999954 55555443
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.4e-21 Score=139.89 Aligned_cols=105 Identities=25% Similarity=0.480 Sum_probs=97.1
Q ss_pred CCCCCCEEEEEEEeCCCCCC--CCCeeEeccCcccccccC-CCceeccCCCCCCCCCcc-ccHHHHHHHHHHhhcCCCCC
Q 032785 25 TDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLDQPNPA 100 (133)
Q Consensus 25 tpy~gg~f~~~i~fp~~yP~--~pP~v~f~t~i~Hpnv~~-~G~ic~~~l~~~~~W~p~-~~i~~il~~i~~~l~~p~~~ 100 (133)
+.|.||+|+|+|.+|++||. +-|+|.|.+.+|||+|.+ ++.+|++-... .|+-. .+|.++|..||.+|.+|+.+
T Consensus 60 GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~--eWRk~ehhiwqvL~ylqriF~dpd~s 137 (258)
T KOG0429|consen 60 GIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFP--EWRKEEHHIWQVLVYLQRIFYDPDVS 137 (258)
T ss_pred ccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhh--hhhccccHHHHHHHHHHHHhcCcccc
Confidence 99999999999999999995 479999999999999997 89999999888 79877 69999999999999999988
Q ss_pred CC--CCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 101 DP--AQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 101 ~p--~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+ .|++|+.+|.+++++|.++|+++++....
T Consensus 138 i~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 138 IDKLINPEAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred hhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 76 49999999999999999999999986543
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.5e-17 Score=120.91 Aligned_cols=93 Identities=26% Similarity=0.473 Sum_probs=77.2
Q ss_pred cchHHHHHHHHHHHHHhCCCC----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 4 GGIARGRLTEERKAWRKNHPH----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 4 ~~~a~~Rl~~E~~~l~~~~~~----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
.+.|+|||++|.++|+..... |-|+||+|+.+|.||.+||++||.+-.+|+--.. .
T Consensus 9 KnpaVkRlmkEa~El~~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRF--E 86 (314)
T KOG0428|consen 9 KNPAVKRLMKEAAELKDPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRF--E 86 (314)
T ss_pred cCHHHHHHHHHHHHhcCchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCce--e
Confidence 478999999999999833221 8899999999999999999999999998863221 1
Q ss_pred CCCceeccCCCC-CCCCCccccHHHHHHHHHHhh-cCCC
Q 032785 62 PSGTVCLSILNE-DNGWRPAITVKQILVGIQDLL-DQPN 98 (133)
Q Consensus 62 ~~G~ic~~~l~~-~~~W~p~~~i~~il~~i~~~l-~~p~ 98 (133)
-+.+||+++.+. .|.|.|+|+|.+.|..|..+| ..|+
T Consensus 87 ~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~ 125 (314)
T KOG0428|consen 87 VNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE 125 (314)
T ss_pred eCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence 237899999987 679999999999999999999 3343
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.7e-15 Score=125.77 Aligned_cols=79 Identities=38% Similarity=0.822 Sum_probs=71.3
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCCeeEeccC--cccccccCCCceeccCCCC-----CCCCCccccHHHHHHHHHHhh--c
Q 032785 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--FFHPNVYPSGTVCLSILNE-----DNGWRPAITVKQILVGIQDLL--D 95 (133)
Q Consensus 25 tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~--i~Hpnv~~~G~ic~~~l~~-----~~~W~p~~~i~~il~~i~~~l--~ 95 (133)
|||.+|.|.|.+.||.+||.+||.|...+. .++||.|++|+||+++|+. .|-|+|+.++.++|.+||.++ .
T Consensus 893 tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~ 972 (1101)
T KOG0895|consen 893 TPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNE 972 (1101)
T ss_pred CccccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccc
Confidence 999999999999999999999999999884 6899999999999999998 368999999999999999998 4
Q ss_pred CCCCCCCC
Q 032785 96 QPNPADPA 103 (133)
Q Consensus 96 ~p~~~~p~ 103 (133)
.|.++++.
T Consensus 973 ~py~ne~g 980 (1101)
T KOG0895|consen 973 EPYFNEAG 980 (1101)
T ss_pred ccccCccc
Confidence 46665543
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=9.7e-12 Score=106.42 Aligned_cols=91 Identities=33% Similarity=0.644 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccC---ccccc
Q 032785 6 IARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG---FFHPN 59 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~---i~Hpn 59 (133)
.-.+|+++|++-+.+..+. |||++|+|.|.|.||..||..||.+.+++. .+.||
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPN 361 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPN 361 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCC
Confidence 3568999999999998776 999999999999999999999999999986 78999
Q ss_pred ccCCCceeccCCCCC-----CCCCcc-ccHHHHHHHHHHhhcC
Q 032785 60 VYPSGTVCLSILNED-----NGWRPA-ITVKQILVGIQDLLDQ 96 (133)
Q Consensus 60 v~~~G~ic~~~l~~~-----~~W~p~-~~i~~il~~i~~~l~~ 96 (133)
.+.+|+||+++|..+ +.|+|. .++.++|..||.++.+
T Consensus 362 lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 362 LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 999999999999882 579998 8999999999999954
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.1e-11 Score=82.26 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=62.9
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccC-CCceeccCCCCCCCCCccccHHHHHHHHHHhhc
Q 032785 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95 (133)
Q Consensus 25 tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~ 95 (133)
|+||+.+|.++|.+.++||..||.|+|.+++.-+.|+. +|.|.-..+.--+.|.-.++++.+|..++.++.
T Consensus 51 T~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~ 122 (138)
T KOG0896|consen 51 TMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM 122 (138)
T ss_pred cccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence 99999999999999999999999999999999999976 777776555544589999999999999997663
No 25
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.80 E-value=3.3e-08 Score=67.76 Aligned_cols=66 Identities=32% Similarity=0.669 Sum_probs=58.6
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEeccCc---ccccccCCCceec---cCCCCCCCCCccccHHHHHHHHHHhhc
Q 032785 28 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNGWRPAITVKQILVGIQDLLD 95 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP~~pP~v~f~t~i---~Hpnv~~~G~ic~---~~l~~~~~W~p~~~i~~il~~i~~~l~ 95 (133)
.|+.+.+.|.+|++||..||.|....+. +-|||+.+|.+|+ +..-. .|.|...+..+|.....+|.
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D--~~~P~~~~~~~l~~a~~lL~ 105 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD--PWDPEGIIADCLERAIRLLE 105 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC--ccCHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999888654 6899999999999 55544 89999999999999999996
No 26
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7e-08 Score=63.61 Aligned_cols=87 Identities=23% Similarity=0.475 Sum_probs=63.8
Q ss_pred EEEEeCCCCCCCCCeeEeccCccccccc-----CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCCCCHH
Q 032785 34 LTLYFSEDYPSKPPKCKFPQGFFHPNVY-----PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN--PADPAQTD 106 (133)
Q Consensus 34 ~~i~fp~~yP~~pP~v~f~t~i~Hpnv~-----~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~--~~~p~n~~ 106 (133)
+.+.|+++||+.||.++.. +|.++ .+|.||+.++... +|+.+++++.++.+|..++..-. ...+++.+
T Consensus 15 l~~~f~~~fp~~ppf~rvv----~p~~~~Gyvl~ggAIcmellt~q-gwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~ 89 (122)
T KOG0897|consen 15 LLDIFDDNFPFMPPFPRVV----KPLEDEGYVLEGGAICMELLTKQ-GWSSAYEVERVIMQIAATLVKGGARIEFPAEKS 89 (122)
T ss_pred eeeecccCCCCCCCcceee----eecccCCEEecchhhHHHHHccc-cccchhhHHHHHHHHHHHhhccceeEecCcchh
Confidence 5677999999999999876 55555 4799999999984 89999999999999999995533 34455444
Q ss_pred HHHHHhh--CHHHHHHHHHHHH
Q 032785 107 GYQLFIQ--DPAEYKRRVRQQA 126 (133)
Q Consensus 107 a~~~~~~--~~~~f~~~~~~~~ 126 (133)
.. +|.. --+.|...++-..
T Consensus 90 sk-~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 90 SK-LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred hh-HhhHHHHHHHHHHHHHHHH
Confidence 33 4432 3445666665543
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.43 E-value=4.1e-07 Score=61.45 Aligned_cols=68 Identities=21% Similarity=0.503 Sum_probs=49.4
Q ss_pred CCCCCCEEE--EEEEeCCCCCCCCCeeEeccCcc-----cccccCCCceeccCCCCCCCCCc-cccHHHHHHHHHHhhc
Q 032785 25 TDWEGGYFP--LTLYFSEDYPSKPPKCKFPQGFF-----HPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLD 95 (133)
Q Consensus 25 tpy~gg~f~--~~i~fp~~yP~~pP~v~f~t~i~-----Hpnv~~~G~ic~~~l~~~~~W~p-~~~i~~il~~i~~~l~ 95 (133)
-.|.|..|. +.|.+|.+||..||.+....... +.+||.+|+|.+..|.. |++ ..++.+++..+...|.
T Consensus 41 i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~---W~~~~s~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 41 ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN---WNPPSSNLVDLVQELQAVFS 116 (121)
T ss_dssp ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT-----TTTS-HHHHHHHHHHCCC
T ss_pred cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc---CCCCCCCHHHHHHHHHHHHh
Confidence 458888885 67789999999999997755322 34999999999999976 988 6789999998888874
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=5.7e-05 Score=58.63 Aligned_cols=69 Identities=22% Similarity=0.538 Sum_probs=57.7
Q ss_pred CCCCCCEEE--EEEEeCCCCCCCCCeeEeccC-----cccccccCCCceeccCCCCCCCCCcc-ccHHHHHHHHHHhhcC
Q 032785 25 TDWEGGYFP--LTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLDQ 96 (133)
Q Consensus 25 tpy~gg~f~--~~i~fp~~yP~~pP~v~f~t~-----i~Hpnv~~~G~ic~~~l~~~~~W~p~-~~i~~il~~i~~~l~~ 96 (133)
.+|.|.+|. +.|.+.+.||..||.+..... --|-+||.+|.|.+..|.. |.+. ..+..++..|.+.|.+
T Consensus 61 ~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~---W~~pssdLv~Liq~l~a~f~~ 137 (365)
T KOG2391|consen 61 VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN---WDPPSSDLVGLIQELIAAFSE 137 (365)
T ss_pred ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---CCCccchHHHHHHHHHHHhcC
Confidence 889999996 677789999999999966442 1389999999999999986 9776 6888888888888855
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.07 E-value=0.00051 Score=47.30 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHhCCC-----------------CCCCCCCE--------E--EEEEEeCCCCCCCCCeeEeccCc-cc
Q 032785 6 IARGRLTEERKAWRKNHP-----------------HTDWEGGY--------F--PLTLYFSEDYPSKPPKCKFPQGF-FH 57 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~-----------------~tpy~gg~--------f--~~~i~fp~~yP~~pP~v~f~t~i-~H 57 (133)
.=..||..||..|-+... .|-|.|.+ | .+.+.+|..||..||.|....-- --
T Consensus 24 ~W~~RLKEEy~aLI~Yv~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~lPeLdGKT 103 (161)
T PF08694_consen 24 LWVQRLKEEYQALIKYVENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIALPELDGKT 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-GGGTTT-
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceeccccCCch
Confidence 346899999998744321 14444443 3 35566699999999999864311 12
Q ss_pred ccccCCCceeccCCCCCCCC---CccccHHHHH
Q 032785 58 PNVYPSGTVCLSILNEDNGW---RPAITVKQIL 87 (133)
Q Consensus 58 pnv~~~G~ic~~~l~~~~~W---~p~~~i~~il 87 (133)
.-.+..|+||++.=... -| .|.+.|...|
T Consensus 104 aKMYRGGkIClt~HFkP-LWakN~PkfGIaHal 135 (161)
T PF08694_consen 104 AKMYRGGKICLTDHFKP-LWAKNVPKFGIAHAL 135 (161)
T ss_dssp SSBCCCCBB---TTHHH-HHHCTTTT--HHHHH
T ss_pred hhhhcCceEeeecccch-hhhhcCCchhHHHHH
Confidence 23345799999764431 34 3446666554
No 30
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.28 E-value=0.007 Score=42.86 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=49.4
Q ss_pred EEEEeCCCCCCCCCeeEeccCcc---cccccCC-----CceeccCCCCCCCCCccccHHHHHHHHHHhhc
Q 032785 34 LTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95 (133)
Q Consensus 34 ~~i~fp~~yP~~pP~v~f~t~i~---Hpnv~~~-----G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~ 95 (133)
+.|.|+.+||..+|.|.+.-..| +||+... ..+|+.--.- ..|.+..++..+|..|...|.
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~-~e~~~~~g~~~~l~rl~~Wl~ 125 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW-SEWRPSWGPEGFLDRLFDWLR 125 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH-HHhhhccCHHHHHHHHHHHHH
Confidence 67899999999999877766443 5777654 6799976655 379999999999999999994
No 31
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.018 Score=39.17 Aligned_cols=79 Identities=22% Similarity=0.383 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------CCCCCCE----------EEEEEEeCCCCCCCCCeeEeccCc-ccc
Q 032785 7 ARGRLTEERKAWRKNHPH-----------------TDWEGGY----------FPLTLYFSEDYPSKPPKCKFPQGF-FHP 58 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~-----------------tpy~gg~----------f~~~i~fp~~yP~~pP~v~f~t~i-~Hp 58 (133)
=++||..||+.|-..... |-|-|.+ |.+.+.+|-.||-.+|.+....-- -..
T Consensus 28 wvqrlkeey~sli~yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialpeldgkta 107 (167)
T KOG3357|consen 28 WVQRLKEEYQSLIAYVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALPELDGKTA 107 (167)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCccccccccCchhh
Confidence 368999999887433211 4444443 445566799999999998753210 011
Q ss_pred cccCCCceeccCCCCCCCCCc---cccHHHH
Q 032785 59 NVYPSGTVCLSILNEDNGWRP---AITVKQI 86 (133)
Q Consensus 59 nv~~~G~ic~~~l~~~~~W~p---~~~i~~i 86 (133)
-.+..|+||+..-... -|.- .+.|...
T Consensus 108 kmyrggkiclt~hfkp-lwarn~pkfgiaha 137 (167)
T KOG3357|consen 108 KMYRGGKICLTDHFKP-LWARNVPKFGIAHA 137 (167)
T ss_pred hhhcCceEeeccccch-hhhhcCcchhHHHH
Confidence 2235699999754442 4643 3444443
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.47 E-value=0.12 Score=33.08 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=19.9
Q ss_pred EEEEEEEeCCCCCCCCCeeEecc
Q 032785 31 YFPLTLYFSEDYPSKPPKCKFPQ 53 (133)
Q Consensus 31 ~f~~~i~fp~~yP~~pP~v~f~t 53 (133)
.+.+.+.||++||..+|.|.+.+
T Consensus 42 ~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 42 SLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred EEEEEEECCCCCCCCCCCeEEEC
Confidence 47889999999999999998764
No 33
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.29 E-value=0.049 Score=35.22 Aligned_cols=28 Identities=21% Similarity=0.327 Sum_probs=19.7
Q ss_pred CCCCEEEEEEEeCCCCCCCCCeeEeccC
Q 032785 27 WEGGYFPLTLYFSEDYPSKPPKCKFPQG 54 (133)
Q Consensus 27 y~gg~f~~~i~fp~~yP~~pP~v~f~t~ 54 (133)
-....+.+.+.||++||..+|.|...+.
T Consensus 46 ~~~~~~~l~~~~p~~YP~~~P~i~l~~~ 73 (113)
T PF05773_consen 46 SSFPSVTLHFTLPPGYPESPPKISLESP 73 (113)
T ss_dssp TTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred ccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence 3455678999999999999999987543
No 34
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=93.98 E-value=0.33 Score=32.80 Aligned_cols=71 Identities=17% Similarity=0.341 Sum_probs=45.9
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc-------ccccC-----CCceeccCCCCCCCCCccc-cHHHHHHHHH
Q 032785 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH-------PNVYP-----SGTVCLSILNEDNGWRPAI-TVKQILVGIQ 91 (133)
Q Consensus 25 tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H-------pnv~~-----~G~ic~~~l~~~~~W~p~~-~i~~il~~i~ 91 (133)
+.|.+..-.+.|.+|..||..+|.+.+..+-.. |+-.. .|+.---...-...|+|.. +|.+.|..|.
T Consensus 37 G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~ 116 (122)
T PF14462_consen 37 GKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHLARVE 116 (122)
T ss_pred CccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHHHHHH
Confidence 668889999999999999999998777654321 21100 1331111111123699985 7888888888
Q ss_pred Hhhc
Q 032785 92 DLLD 95 (133)
Q Consensus 92 ~~l~ 95 (133)
..|.
T Consensus 117 ~~L~ 120 (122)
T PF14462_consen 117 HALA 120 (122)
T ss_pred HHHh
Confidence 7763
No 35
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=86.38 E-value=2.6 Score=33.23 Aligned_cols=60 Identities=23% Similarity=0.538 Sum_probs=41.8
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCCeeEec-cCcccccccCCCceeccCCCCCCCCCcc--ccHHHHHHHHHH
Q 032785 25 TDWEGGYFPLTLYFSEDYPSKPPKCKFP-QGFFHPNVYPSGTVCLSILNEDNGWRPA--ITVKQILVGIQD 92 (133)
Q Consensus 25 tpy~gg~f~~~i~fp~~yP~~pP~v~f~-t~i~Hpnv~~~G~ic~~~l~~~~~W~p~--~~i~~il~~i~~ 92 (133)
=||.|-..+-.|.|...+|..||.+.|- ..-|+|... . +..|. +|++. .++..++..|..
T Consensus 60 IPy~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s---~--l~~L~---~Wd~~dp~~Ll~li~EL~~ 122 (333)
T PF06113_consen 60 IPYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS---K--LPSLV---NWDPSDPNCLLNLISELRQ 122 (333)
T ss_pred eeccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh---h--cchhh---cCCCCCchHHHHHHHHHHH
Confidence 6788888888999999999999999996 345888432 1 23333 59877 355555554443
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=86.16 E-value=1.3 Score=31.59 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=23.0
Q ss_pred Cccc---ccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhh
Q 032785 54 GFFH---PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 94 (133)
Q Consensus 54 ~i~H---pnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l 94 (133)
++|| +||+.+|+||...... |.......+..+...|
T Consensus 91 ~Ly~aPf~NV~~~g~vC~G~~~~-----P~~~~~~~i~~we~~F 129 (175)
T PF14460_consen 91 PLYHAPFFNVYSNGSVCWGNNSL-----PKISTLASIEAWEDAF 129 (175)
T ss_pred eeEeCCccccCCCCcEeeCCCcC-----CCccCHHHHHHHHHHH
Confidence 4566 5999999999987443 3443344455555554
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=79.12 E-value=2 Score=33.25 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCCC-------------CCCC-CCEEEEEEEeCCCCCCCCCeeEeccCcccccccCCCceeccCCCC
Q 032785 8 RGRLTEERKAWRKNHPH-------------TDWE-GGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE 73 (133)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~-------------tpy~-gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~ 73 (133)
..+|.+|+.++..+... +..+ +....++|.++.+||.++|.+...-++ .. ..
T Consensus 101 ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D~~R~H~l~l~l~~~yp~~~p~~~~~~P~-~~-------------~~ 166 (291)
T PF09765_consen 101 YSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFDSSRQHYLELKLPSNYPFEPPSCSLDLPI-PF-------------SL 166 (291)
T ss_dssp C-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEETTCEEEEEEEETTTTTTTSEEEECS-TTS--H-------------HH
T ss_pred HHHHHHHHHHhccccceEEecCCCccEEEEEEEcCCceEEEEEEECCCCCCCCceeeCCCCc-ch-------------hh
Confidence 35788888888766543 2111 245568999999999999976433221 00 11
Q ss_pred CCCCCc-cccHHHHHHHHHHhh
Q 032785 74 DNGWRP-AITVKQILVGIQDLL 94 (133)
Q Consensus 74 ~~~W~p-~~~i~~il~~i~~~l 94 (133)
.|.+ ..++.+++...+..+
T Consensus 167 --~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 167 --SWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp --HHHCHT-SHHHHHHHHHHHH
T ss_pred --hhcccccCHHHHHHHHHHHH
Confidence 5888 678888876666655
No 38
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.54 E-value=6.7 Score=29.01 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=18.6
Q ss_pred EEEEEEEeCCCCCCCCCeeEe
Q 032785 31 YFPLTLYFSEDYPSKPPKCKF 51 (133)
Q Consensus 31 ~f~~~i~fp~~yP~~pP~v~f 51 (133)
.+.+.+.++.+||..+|.+.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 788999999999999999943
No 39
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.90 E-value=10 Score=33.38 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=23.3
Q ss_pred CCCCCCEE-EEEEEeCCCCCCC-CCeeEeccC
Q 032785 25 TDWEGGYF-PLTLYFSEDYPSK-PPKCKFPQG 54 (133)
Q Consensus 25 tpy~gg~f-~~~i~fp~~yP~~-pP~v~f~t~ 54 (133)
.+-+|.+| ++.|.||.+||.+ +|.++|..+
T Consensus 460 ~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 460 HRVDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred CccccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34456666 7899999999986 789998653
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=70.39 E-value=6.5 Score=27.07 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=22.6
Q ss_pred CCCEEEEEEEeCCCCC-CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP-SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP-~~pP~v~f~ 52 (133)
+.|.|.|.-.+|-.|| .+||.|.|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4689999999999999 999999885
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=69.08 E-value=6.5 Score=21.51 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 032785 7 ARGRLTEERKAWRKNHPH 24 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~ 24 (133)
-.+||++|+.+|......
T Consensus 20 eNrRL~ke~~eLralk~~ 37 (44)
T smart00340 20 ENRRLQKEVQELRALKLS 37 (44)
T ss_pred HHHHHHHHHHHHHhcccC
Confidence 468999999999876654
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=66.12 E-value=8.6 Score=27.83 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.7
Q ss_pred CCCEEEEEEEeCCCCCCCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYPSKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP~~pP~v~f~ 52 (133)
+.|.|.|+=.+|--||.++|.|+|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4688999999999999999999885
No 43
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.54 E-value=6.8 Score=28.49 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCc------ccccccCCCceeccCCCCCCCCCcc
Q 032785 7 ARGRLTEERKAWRKNHPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF------FHPNVYPSGTVCLSILNEDNGWRPA 80 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i------~Hpnv~~~G~ic~~~l~~~~~W~p~ 80 (133)
|..=+++++.+-.++. +|| .+.+.+.--=|.+-|...+..-. -+-.-.-.+..|+++++. .|+|.
T Consensus 80 aahFtR~~La~~LRsr--~~y-----qV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr--~Y~pd 150 (200)
T KOG0177|consen 80 AAHFTRRELAESLRSR--TPY-----QVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDR--YYKPD 150 (200)
T ss_pred HHHHHHHHHHHHHhcC--CCc-----eEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHh--hhCCC
Confidence 3344555655554432 234 55555543336667888776532 111111246799999998 89999
Q ss_pred ccHHHHHHHHHHhhc
Q 032785 81 ITVKQILVGIQDLLD 95 (133)
Q Consensus 81 ~~i~~il~~i~~~l~ 95 (133)
+|++..+.-++.++.
T Consensus 151 mt~eea~~lmkKCv~ 165 (200)
T KOG0177|consen 151 MTIEEALDLMKKCVL 165 (200)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999988877776663
No 44
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=63.13 E-value=14 Score=27.65 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=26.8
Q ss_pred Cccc---ccccCCCceeccCCCCCCCCCcc-ccHHHHHHHHHHhhcCCCC
Q 032785 54 GFFH---PNVYPSGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLDQPNP 99 (133)
Q Consensus 54 ~i~H---pnv~~~G~ic~~~l~~~~~W~p~-~~i~~il~~i~~~l~~p~~ 99 (133)
++|| +||+.+|+||..... .|. .++.+ +....+.|.+-.+
T Consensus 132 ~L~~aPffNV~~~G~VC~G~~~-----~P~~~~~~~-i~~we~~FF~S~F 175 (228)
T TIGR03737 132 KLYQAPLFNVWSNGEICAGNAR-----LPDRPTVAN-ISAWEDAFFSSRF 175 (228)
T ss_pred eeccCCcCccCCCCeEeeCCCc-----CCCCcCHHH-HHHHHHHHhCCcc
Confidence 4565 589899999997653 344 46666 7777777754333
No 45
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=61.25 E-value=12 Score=26.22 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=22.4
Q ss_pred CCCEEEEEEEeCCCCC-----CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP-----SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP-----~~pP~v~f~ 52 (133)
+.|.|.|.-.+|--|| ..||.|.|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 4689999999999999 899999885
No 46
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=48.15 E-value=25 Score=25.56 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.4
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYPS-----KPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP~-----~pP~v~f~ 52 (133)
+.|.|.|+-..|-.||. .||.|.|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 46889999999999998 88888774
No 47
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.64 E-value=27 Score=22.63 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHhCCCC--CCCCCCEEEEEEEeCCCCCCCCCeeEec
Q 032785 6 IARGRLTEERKAWRKNHPH--TDWEGGYFPLTLYFSEDYPSKPPKCKFP 52 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~--tpy~gg~f~~~i~fp~~yP~~pP~v~f~ 52 (133)
.|-.+|..-+..++.+.+. .|--.|+|+++|...+.|- |.|.
T Consensus 23 ~Aka~I~~Rl~rl~~GN~GD~kpvgeGV~ELRId~GpGyR-----vY~~ 66 (100)
T COG3657 23 RAKAKIAARLDRLALGNFGDVKPVGEGVSELRIDHGPGYR-----VYFQ 66 (100)
T ss_pred HHHHHHHHHHHHHhcCCCcCccccccchhhheeccCCceE-----EEEE
Confidence 4566788888888887776 8899999999999999983 6665
No 48
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=46.43 E-value=28 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.6
Q ss_pred CCCEEEEEEEeCCCCCC-----CCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYPS-----KPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP~-----~pP~v~f~ 52 (133)
+.|.|.|.-.+|--||. .||.|+|.
T Consensus 91 ~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 91 ADGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 35889999999999995 88888764
No 49
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=45.34 E-value=48 Score=19.91 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=32.5
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 89 GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 89 ~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.|+.++..-+....+.++|...+.+--+.|...+-+.+.++|.
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555664445567789999999988888898888888777664
No 50
>TIGR02683 upstrm_HI1419 probable addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.
Probab=44.30 E-value=66 Score=20.19 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhCCCC--CCCCCCEEEEEEEeCCCC
Q 032785 6 IARGRLTEERKAWRKNHPH--TDWEGGYFPLTLYFSEDY 42 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~--tpy~gg~f~~~i~fp~~y 42 (133)
.+..||...++.++.+++. -+..||.+.+++.+..+|
T Consensus 20 ~~~~kI~~~i~~l~~g~~~~~K~l~~~~~ElR~r~g~~y 58 (95)
T TIGR02683 20 RAKARILARIDRLALGNFGDVKPVGEGVSELRIDFGPGY 58 (95)
T ss_pred HHHHHHHHHHHHHhccCCCCccCCCCCcEEEEecCCCCE
Confidence 4566788888888765444 667889999999886444
No 51
>PF07598 DUF1561: Protein of unknown function (DUF1561); InterPro: IPR011455 This is a family of paralogous proteins in Leptospira interrogans.
Probab=43.88 E-value=46 Score=28.41 Aligned_cols=80 Identities=21% Similarity=0.383 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCCCCCCCCEEEEEEEeCCCCCCCCCeeEeccC-----------------ccccccc--C-CCce----ec
Q 032785 13 EERKAWRKNHPHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-----------------FFHPNVY--P-SGTV----CL 68 (133)
Q Consensus 13 ~E~~~l~~~~~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~-----------------i~Hpnv~--~-~G~i----c~ 68 (133)
+=+.||++....+|.++|=|.| +.=|..=|.+.|.+. .+|+.-+ . +-++ -+
T Consensus 402 QMlAELqe~h~~~PlqsGGYFF-----dTa~~~dPFiSFrqRyP~L~~~L~~~~~~~~~P~~~~e~~~~r~~r~~~~~a~ 476 (632)
T PF07598_consen 402 QMLAELQEYHSRGPLQSGGYFF-----DTAPNTDPFISFRQRYPELAARLENTPSYYTVPLHVGEDMFTRTRRLARASAL 476 (632)
T ss_pred HHHHHHHhhcCCCCCCCCceee-----cCCCCCCceeehhhhChhHHHHHhhhHHhccCCCCCccccchHHHHHHHHHHH
Confidence 3466777766778888887776 345666677777553 2333221 1 1122 23
Q ss_pred cCCCCCCCCCcc---ccHHHHHHHHHHhhcCCC
Q 032785 69 SILNEDNGWRPA---ITVKQILVGIQDLLDQPN 98 (133)
Q Consensus 69 ~~l~~~~~W~p~---~~i~~il~~i~~~l~~p~ 98 (133)
.+|.. -.|.++ .+-.+++..|++||..|-
T Consensus 477 ~mLP~-Y~W~~S~~~~t~~ei~s~i~~Li~~P~ 508 (632)
T PF07598_consen 477 TMLPQ-YEWRPSSEATTRSEIRSHIRSLINSPP 508 (632)
T ss_pred HhcCC-cceeecccccCHHHHHHHHHHHhcCCC
Confidence 34433 479886 588899999999997765
No 52
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=43.48 E-value=32 Score=29.24 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.0
Q ss_pred CCCCCCEEEEEEEeCCCCCCC---CCeeEeccC
Q 032785 25 TDWEGGYFPLTLYFSEDYPSK---PPKCKFPQG 54 (133)
Q Consensus 25 tpy~gg~f~~~i~fp~~yP~~---pP~v~f~t~ 54 (133)
+||.=|.|.+. .+|+.||+. -|-++|+|+
T Consensus 248 GpY~WgryDll-vlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDLL-VLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceEE-EecCCCCcccccCcceeeecc
Confidence 99999999984 468899985 699999986
No 53
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=41.91 E-value=67 Score=19.86 Aligned_cols=32 Identities=16% Similarity=0.389 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 100 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 100 ~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
..|-|.+|...|.+-..+..+..+++.++|++
T Consensus 24 THP~d~~Al~~y~~~~~~~~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 24 THPDDQEALEYYNEYSKQRKQLKKEYEKRYGP 55 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 67889999999998888888888888888875
No 54
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=38.53 E-value=38 Score=25.09 Aligned_cols=58 Identities=21% Similarity=0.346 Sum_probs=42.7
Q ss_pred CCCCeeEeccCcccccccC--CCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCC
Q 032785 44 SKPPKCKFPQGFFHPNVYP--SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 101 (133)
Q Consensus 44 ~~pP~v~f~t~i~Hpnv~~--~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~ 101 (133)
..||.|.|-.+.|...||- .|-|--.+.+.+..--|+..+.+-|..|..++..|+.+.
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvddqlkrif~~lg~p~ed~ 226 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEDQ 226 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHHHHHHHHHHHhCCCcccc
Confidence 4799999999999999883 555555555552223677888899999988887777554
No 55
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=38.36 E-value=33 Score=20.01 Aligned_cols=19 Identities=16% Similarity=0.618 Sum_probs=12.2
Q ss_pred CCCccccHHHHHHHHHHhh
Q 032785 76 GWRPAITVKQILVGIQDLL 94 (133)
Q Consensus 76 ~W~p~~~i~~il~~i~~~l 94 (133)
+|.|.++|.+++...-...
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 7999999999998766554
No 56
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=36.21 E-value=46 Score=26.38 Aligned_cols=22 Identities=14% Similarity=0.442 Sum_probs=18.2
Q ss_pred EEEEEEeCCCCCCCCCeeEecc
Q 032785 32 FPLTLYFSEDYPSKPPKCKFPQ 53 (133)
Q Consensus 32 f~~~i~fp~~yP~~pP~v~f~t 53 (133)
|-+.|.+|..||...|.++|.+
T Consensus 308 flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 308 FLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred EEEEEeccCCCCCcCCeEEEEe
Confidence 4466667999999999999864
No 57
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=35.35 E-value=50 Score=25.61 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=21.2
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|.=..|.-|| .+||.|.|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 5789999999999997 678888875
No 58
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=35.30 E-value=34 Score=26.19 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=26.8
Q ss_pred CCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 102 PAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 102 p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
-.+.+|+..|..|++.|...+.+.+++.+.
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 468999999999999999999999998764
No 59
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=33.18 E-value=56 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=21.3
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|.=..|.-|| .+||.|.|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 5789999999999998 578888874
No 60
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.16 E-value=1.2e+02 Score=24.96 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhCCCC
Q 032785 10 RLTEERKAWRKNHPH 24 (133)
Q Consensus 10 Rl~~E~~~l~~~~~~ 24 (133)
--..||..|..-.+.
T Consensus 8 ~qedEL~AL~siy~e 22 (445)
T KOG1814|consen 8 LQEDELEALESIYPE 22 (445)
T ss_pred HHHHHHHHHHHhccc
Confidence 334466666655443
No 61
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=31.46 E-value=43 Score=25.62 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCC-------------CCCCCCEEEEEEEeCCCCCCCCCeeE
Q 032785 10 RLTEERKAWRKNHPH-------------TDWEGGYFPLTLYFSEDYPSKPPKCK 50 (133)
Q Consensus 10 Rl~~E~~~l~~~~~~-------------tpy~gg~f~~~i~fp~~yP~~pP~v~ 50 (133)
|+..|+-++.+.... |||.+|.||+.=.+.+--=-..|.|-
T Consensus 155 rvsedLl~im~~~TG~~~~~~PlT~qDITPygNgvyHiNSIlQP~~aT~aPVVG 208 (276)
T PF06675_consen 155 RVSEDLLDIMERVTGKLPVTFPLTTQDITPYGNGVYHINSILQPAVATDAPVVG 208 (276)
T ss_pred EcCHHHHHHHHhhcCCCceEEeccccccccCCCCceeeeccccchhhcCCCeeE
Confidence 455566666554332 99999999998777655445566653
No 62
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=31.41 E-value=64 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=20.6
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|.=.+|..|| ..||.|.|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 4788999999998887 578888774
No 63
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=31.23 E-value=68 Score=25.30 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.4
Q ss_pred CEEEEEEEeCCCCCCCCCeeEeccC
Q 032785 30 GYFPLTLYFSEDYPSKPPKCKFPQG 54 (133)
Q Consensus 30 g~f~~~i~fp~~yP~~pP~v~f~t~ 54 (133)
-.+.+.+..+..||...|.|....+
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3567888899999999999998775
No 64
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=31.12 E-value=66 Score=23.93 Aligned_cols=25 Identities=24% Similarity=0.632 Sum_probs=21.2
Q ss_pred CCCEEEEEEEeCCCCCC-------CCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYPS-------KPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP~-------~pP~v~f~ 52 (133)
+.|.|.|.=..|--||. .||.|.|.
T Consensus 121 ~~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 121 DDGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 47999999999999964 79999884
No 65
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=31.04 E-value=76 Score=24.35 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=26.8
Q ss_pred CCCCCCEEEEEEEeCCCCCCCC--CeeEecc
Q 032785 25 TDWEGGYFPLTLYFSEDYPSKP--PKCKFPQ 53 (133)
Q Consensus 25 tpy~gg~f~~~i~fp~~yP~~p--P~v~f~t 53 (133)
+.+.|..|++.|..|.+||-.. |.|.|+.
T Consensus 16 s~~~~~~yri~i~~P~~~~~~~~YpVlY~lD 46 (264)
T COG2819 16 SANTGRKYRIFIATPKNYPKPGGYPVLYMLD 46 (264)
T ss_pred ecCCCcEEEEEecCCCCCCCCCCCcEEEEec
Confidence 7899999999999999999888 9999976
No 66
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=30.70 E-value=66 Score=24.90 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=20.9
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|+=..|.-|| ..||.|.|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 5789999999999996 578888774
No 67
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=29.23 E-value=74 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=21.3
Q ss_pred CCCEEEEEEEeCCCCCC-------CCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYPS-------KPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP~-------~pP~v~f~ 52 (133)
+.|.|.|.=.+|--||. .||.|.|.
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 47899999999999975 89999883
No 68
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=28.87 E-value=40 Score=19.81 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhC
Q 032785 8 RGRLTEERKAWRKN 21 (133)
Q Consensus 8 ~~Rl~~E~~~l~~~ 21 (133)
.+||++||.++.-+
T Consensus 36 r~rL~kEL~d~D~~ 49 (59)
T PF12065_consen 36 RQRLRKELQDMDMC 49 (59)
T ss_pred HHHHHHHHHHcccc
Confidence 36888888887544
No 69
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=28.08 E-value=1.4e+02 Score=17.83 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=28.9
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 032785 89 GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 130 (133)
Q Consensus 89 ~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 130 (133)
.|+.++..-++...+++++..+..+=.+.|...+-..+.+.|
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lA 45 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLA 45 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777666778889999999888888889888877776654
No 70
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=27.63 E-value=84 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=20.4
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|.=..|.-|| ..||.|.|.
T Consensus 149 ~~G~y~F~Ti~P~~YpiP~dgp~g~lL~~~grh~~RpaHIH~~ 191 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQIPDAGPTGALLETMGRHSWRPAHVHYK 191 (246)
T ss_pred CCCCEEEEEECCCCCCCCCCCchHHHHHhcccCCCCCCeEEEE
Confidence 4789999999999997 468888774
No 71
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=27.19 E-value=1.5e+02 Score=18.45 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=19.7
Q ss_pred CHHHHHHHhhCHHHHHHHHHHHHHh
Q 032785 104 QTDGYQLFIQDPAEYKRRVRQQAKQ 128 (133)
Q Consensus 104 n~~a~~~~~~~~~~f~~~~~~~~~~ 128 (133)
..+...++++|+++|.+.-++.+++
T Consensus 6 FD~L~~LA~~dPe~fe~lr~~~~ee 30 (83)
T PF11333_consen 6 FDELKELAQNDPEAFEQLRQELIEE 30 (83)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3456678899999999988887764
No 72
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=26.96 E-value=1.5e+02 Score=18.88 Aligned_cols=27 Identities=15% Similarity=0.028 Sum_probs=21.7
Q ss_pred CCCCCEEEEEEEeCCCCCCCCCeeEeccC
Q 032785 26 DWEGGYFPLTLYFSEDYPSKPPKCKFPQG 54 (133)
Q Consensus 26 py~gg~f~~~i~fp~~yP~~pP~v~f~t~ 54 (133)
.-+|..+.|.-.-|..|| .|.|.+.+.
T Consensus 15 V~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 15 VEEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred EecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 456888888888899999 599988864
No 73
>KOG3696 consensus Aspartyl beta-hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=26.09 E-value=39 Score=26.61 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=18.5
Q ss_pred CCCCCCCeeEeccCcccccccCC
Q 032785 41 DYPSKPPKCKFPQGFFHPNVYPS 63 (133)
Q Consensus 41 ~yP~~pP~v~f~t~i~Hpnv~~~ 63 (133)
+=+...|.|.|.-.+|||||-+.
T Consensus 304 gs~eds~rvV~~V~lwhpevq~~ 326 (334)
T KOG3696|consen 304 GSSEDSPRVVFTVDLWHPEVQPA 326 (334)
T ss_pred CCcccCceEEEEEeccCcccccc
Confidence 33456799999999999999754
No 74
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=24.26 E-value=1.1e+02 Score=16.57 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=16.1
Q ss_pred hCHHHHHHHHHHHHHhcCC
Q 032785 113 QDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 113 ~~~~~f~~~~~~~~~~~a~ 131 (133)
.|.-.|.++++..+.+|+-
T Consensus 13 ~Dp~~yi~~i~~~~~~yGi 31 (42)
T smart00545 13 KDPLAYISKIRPQAEKYGI 31 (42)
T ss_pred HCHHHHHHHHHHHHhhCCE
Confidence 4889999999999988863
No 75
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=22.89 E-value=1.1e+02 Score=18.58 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=24.1
Q ss_pred cccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcC
Q 032785 59 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 96 (133)
Q Consensus 59 nv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~ 96 (133)
-|+++|.|-++.++. -=-.+.|+.++=..|...+..
T Consensus 34 ~V~~dG~I~lP~iG~--v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 34 TVDPDGTISLPLIGP--VKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp E--TTSEEEETTTEE--EE-TT--HHHHHHHHHHHHTT
T ss_pred EECCCCcEeecccce--EEECCCCHHHHHHHHHHHHHH
Confidence 467899999999987 444557888888888777754
No 76
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=22.84 E-value=93 Score=24.63 Aligned_cols=30 Identities=7% Similarity=0.113 Sum_probs=22.5
Q ss_pred CCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 032785 103 AQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 132 (133)
Q Consensus 103 ~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 132 (133)
-+.+++..|.+.-+.=+++||+.+.|.++|
T Consensus 309 rdk~s~~~f~k~LD~EEekaRkls~k~~~p 338 (358)
T PF08405_consen 309 RDKNSGAAFMKTLDMEEEKARKLSTKSASP 338 (358)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHhhccCCC
Confidence 356666677766666778999999998874
No 77
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=22.23 E-value=2.1e+02 Score=22.87 Aligned_cols=46 Identities=30% Similarity=0.698 Sum_probs=26.5
Q ss_pred CCCCCCEEEEEEE----eCCCCCCCCCeeE--e--ccCcccccccCCCceeccCCCCCCCCCccccH
Q 032785 25 TDWEGGYFPLTLY----FSEDYPSKPPKCK--F--PQGFFHPNVYPSGTVCLSILNEDNGWRPAITV 83 (133)
Q Consensus 25 tpy~gg~f~~~i~----fp~~yP~~pP~v~--f--~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i 83 (133)
.||+|.+|.+.=. -...|| +.-. . ...++||| |--.+.+ |-|+.+.
T Consensus 240 ap~QGkV~s~~~~~~~~~~~~y~---~~~~~gyg~~~Gl~g~N-------CrH~~~p---~~~Gi~~ 293 (361)
T PF06152_consen 240 APWQGKVYSLSGGGRPGKDGKYP---SLSDTGYGTPAGLFGPN-------CRHSLYP---FIPGIST 293 (361)
T ss_pred cCcCCEEEEeccCCCCCCCCCCC---chhhccccccCCCcccC-------CCCcccC---CCCCCCC
Confidence 8999999944321 122343 2111 1 22578888 7666655 7777654
No 78
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=21.93 E-value=34 Score=17.45 Aligned_cols=11 Identities=27% Similarity=0.794 Sum_probs=7.0
Q ss_pred cccccccCCCc
Q 032785 55 FFHPNVYPSGT 65 (133)
Q Consensus 55 i~Hpnv~~~G~ 65 (133)
.|||.+..+|+
T Consensus 2 ~yHPg~~~~g~ 12 (32)
T PF00779_consen 2 KYHPGAWRGGK 12 (32)
T ss_dssp EE-SS-EETTC
T ss_pred CcCCCcccCCc
Confidence 48999988776
No 79
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=21.78 E-value=1.2e+02 Score=27.62 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCCEEEEEEE
Q 032785 6 IARGRLTEERKAWRKNHPHTDWEGGYFPLTLY 37 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~tpy~gg~f~~~i~ 37 (133)
+.++||++||+..++..+...-+...|+++|.
T Consensus 142 ve~kkLK~eLkrykq~g~~~L~~dKLFEik~h 173 (989)
T PF09421_consen 142 VENKKLKEELKRYKQRGPAMLRKDKLFEIKIH 173 (989)
T ss_pred HHHHHHHHHHHHhccCCchhccccceeEEEec
Confidence 56899999999999998888888899998876
No 80
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.71 E-value=1.3e+02 Score=23.00 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.4
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|.=..|.-|| .+||.|.|.
T Consensus 155 ~~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 155 EDGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 5689999999998886 578888774
No 81
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=21.45 E-value=1.2e+02 Score=21.28 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=25.9
Q ss_pred ccccCCCceeccCCCCCCCCCccccHHHHHHHHHHh
Q 032785 58 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 93 (133)
Q Consensus 58 pnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~ 93 (133)
--|+++|+|..-. . .+++.-+...++..|..+
T Consensus 124 fvId~dG~I~~~~--~--~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 124 FVIDPDGKIRYVW--R--KVKVKGHADEVLAALKKL 155 (157)
T ss_pred EEECCCCeEEEEe--c--CCCCcccHHHHHHHHHHh
Confidence 3578889999876 3 688888999999888775
No 82
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=21.22 E-value=66 Score=25.50 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCCEEEEEEEeCCCCCCC
Q 032785 7 ARGRLTEERKAWRKNHPHTDWEGGYFPLTLYFSEDYPSK 45 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~tpy~gg~f~~~i~fp~~yP~~ 45 (133)
+.+|--+|+..++ ...|...|.||+.||.+
T Consensus 295 ~~~~~dkEl~nf~---------~kl~E~~i~FpPsypys 324 (391)
T KOG1976|consen 295 MVKRYDKELANFA---------FKLKEETIFFPPSYPYS 324 (391)
T ss_pred hhhhcchHHHHHH---------HHHhheeecCCCCCCCC
Confidence 5666666766653 44778899999999976
No 83
>PF06097 DUF945: Bacterial protein of unknown function (DUF945); InterPro: IPR010352 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.76 E-value=1.9e+02 Score=23.15 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHhCCCC----CCCCCCEEE----EEEEeCCCCCC-----CCCeeEeccCcccc
Q 032785 5 GIARGRLTEERKAWRKNHPH----TDWEGGYFP----LTLYFSEDYPS-----KPPKCKFPQGFFHP 58 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~----tpy~gg~f~----~~i~fp~~yP~-----~pP~v~f~t~i~Hp 58 (133)
..+.+++.+-+.++.+.+.. .-|+.|+|. ++|.+...-.. .+..+.|...|.|-
T Consensus 27 ~~~e~~~~~~~~~~n~~~~~~~~~~~yerG~fsS~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~HG 93 (460)
T PF06097_consen 27 KQAEQQYQQQVAQLNQQPGVKVSNVSYERGWFSSTATYRLTLDDPEDDPAQSAEPVTIEFNSDIRHG 93 (460)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEEEcccccEEEEEEEEEEEcCccccccccCCCeEEEEEEEEEEC
Confidence 44556666667777654433 779999886 45555443322 56789999999993
No 84
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=20.37 E-value=1.1e+02 Score=18.05 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=24.2
Q ss_pred CCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 102 PAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 102 p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.++.+++..+.++-+.+.+.+-+.+.+|+.
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~ 48 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMR 48 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999988888888888888777653
No 85
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=20.29 E-value=1.4e+02 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=20.1
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|+=..|.-|| ..||.|.|.
T Consensus 150 ~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 192 (247)
T cd03462 150 EDGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFK 192 (247)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 5688999999998885 477888774
No 86
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=20.06 E-value=1.2e+02 Score=17.08 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=14.4
Q ss_pred chHHHHHHHHHHHHHhCCC
Q 032785 5 GIARGRLTEERKAWRKNHP 23 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~ 23 (133)
..+..||..|+..+...+.
T Consensus 21 ~is~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 21 KISKERIREELEKILSSPN 39 (64)
T ss_dssp GS-HHHHHHHHHHHHTSTT
T ss_pred cCCHHHHHHHHHHHHcCCC
Confidence 5677899999999877654
Done!