Query 032785
Match_columns 133
No_of_seqs 145 out of 1124
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:16:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 5.9E-45 2E-49 254.0 16.4 127 4-132 2-151 (151)
2 3rcz_B SUMO-conjugating enzyme 100.0 7.6E-45 2.6E-49 256.3 16.8 130 2-131 6-163 (163)
3 2aak_A UBC1, ubiquitin conjuga 100.0 1.5E-44 5.1E-49 252.2 16.7 127 1-131 1-150 (152)
4 1ayz_A UBC2, ubiquitin-conjuga 100.0 9.4E-45 3.2E-49 257.1 15.7 127 1-131 1-150 (169)
5 2c2v_B Ubiquitin-conjugating e 100.0 2.2E-45 7.4E-50 257.0 12.2 129 3-133 2-154 (154)
6 1z2u_A Ubiquitin-conjugating e 100.0 1.9E-44 6.6E-49 251.2 16.4 127 3-131 1-150 (150)
7 2gjd_A Ubiquitin-conjugating e 100.0 2.1E-44 7.1E-49 252.7 16.2 129 1-131 1-157 (157)
8 2ucz_A UBC7, ubiquitin conjuga 100.0 2E-44 6.8E-49 254.7 15.1 129 1-131 1-164 (165)
9 1zdn_A Ubiquitin-conjugating e 100.0 1.5E-44 5.1E-49 253.7 13.9 124 5-130 12-158 (158)
10 1yh2_A HSPC150 protein similar 100.0 4.6E-44 1.6E-48 253.7 16.4 129 3-131 1-154 (169)
11 2grr_A Ubiquitin-conjugating e 100.0 6.6E-44 2.3E-48 251.1 16.7 129 1-131 4-160 (161)
12 2ayv_A Ubiquitin-conjugating e 100.0 7E-44 2.4E-48 252.0 16.1 124 5-130 20-166 (166)
13 2c4o_A Ubiquitin-conjugating e 100.0 1.4E-43 4.8E-48 250.3 16.3 126 4-131 17-165 (165)
14 2r0j_A Ubiquitin carrier prote 100.0 7.2E-44 2.5E-48 248.1 14.2 124 7-132 2-148 (149)
15 3h8k_A Ubiquitin-conjugating e 100.0 1.2E-43 4.3E-48 250.3 15.5 127 5-131 2-163 (164)
16 2bep_A Ubiquitin-conjugating e 100.0 2E-43 6.9E-48 248.2 16.3 127 1-131 5-158 (159)
17 2e2c_A Ubiquitin conjugating e 100.0 1.3E-43 4.3E-48 248.5 13.9 124 5-131 8-154 (156)
18 1wzv_A Ubiquitin-conjugating e 100.0 1.9E-43 6.6E-48 247.3 14.2 125 5-131 3-151 (155)
19 1jat_A Ubiquitin-conjugating e 100.0 1.2E-43 4.2E-48 248.3 12.8 125 5-131 4-151 (155)
20 3fn1_B NEDD8-conjugating enzym 100.0 4.4E-43 1.5E-47 248.2 15.3 127 5-131 13-167 (167)
21 3k9o_A Ubiquitin-conjugating e 100.0 5.1E-43 1.7E-47 254.4 15.2 127 1-131 2-155 (201)
22 2f4z_A Tgtwinscan_2721 - E2 do 100.0 6.2E-43 2.1E-47 252.2 15.6 125 5-131 31-192 (193)
23 1fxt_A Ubiquitin-conjugating e 100.0 1.3E-43 4.3E-48 246.8 11.5 123 7-131 2-149 (149)
24 1i7k_A Ubiquitin-conjugating e 100.0 1.3E-42 4.3E-47 248.1 14.5 124 5-131 29-175 (179)
25 3bzh_A Ubiquitin-conjugating e 100.0 3.3E-42 1.1E-46 248.6 16.2 125 5-131 47-194 (194)
26 2pwq_A Ubiquitin conjugating e 100.0 1E-42 3.5E-47 254.8 13.6 125 5-131 22-170 (216)
27 2z5d_A Ubiquitin-conjugating e 100.0 6.8E-43 2.3E-47 249.3 11.5 129 1-131 20-169 (179)
28 1tte_A Ubiquitin-conjugating e 100.0 1.9E-42 6.5E-47 253.2 13.7 124 6-131 2-150 (215)
29 1c4z_D UBCH7, ubiquitin conjug 100.0 2.9E-43 1E-47 246.2 8.6 125 7-132 3-150 (154)
30 3rz3_A Ubiquitin-conjugating e 100.0 7.3E-42 2.5E-46 245.1 14.6 130 1-131 3-173 (183)
31 3e46_A Ubiquitin-conjugating e 100.0 1.1E-41 3.8E-46 254.3 15.6 127 1-131 54-207 (253)
32 1yrv_A Ubiquitin-conjugating l 100.0 4.6E-42 1.6E-46 243.2 11.8 125 1-128 20-168 (169)
33 2y9m_A Ubiquitin-conjugating e 100.0 2.4E-41 8.2E-46 240.3 14.1 128 1-131 3-168 (172)
34 2onu_A Ubiquitin-conjugating e 100.0 3.5E-42 1.2E-46 240.2 9.2 124 6-131 2-147 (152)
35 2awf_A Ubiquitin-conjugating e 100.0 1.4E-41 4.8E-46 241.5 11.5 122 4-125 15-172 (172)
36 1yf9_A Ubiquitin carrier prote 100.0 1.2E-41 4.2E-46 241.5 10.6 124 6-131 12-156 (171)
37 1y8x_A Ubiquitin-conjugating e 100.0 2.7E-40 9.2E-45 232.4 13.7 121 5-128 5-147 (160)
38 2nvu_C NEDD8-conjugating enzym 100.0 7.1E-40 2.4E-44 234.1 13.0 122 4-128 24-167 (180)
39 4ddg_A Ubiquitin-conjugating e 100.0 1.8E-39 6.2E-44 256.3 16.1 125 5-131 2-149 (399)
40 3o2u_A NEDD8-conjugating enzym 100.0 1.2E-39 4.2E-44 234.6 13.2 124 4-129 27-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 3.1E-38 1.1E-42 223.3 9.4 120 1-124 5-164 (167)
42 3ceg_A Baculoviral IAP repeat- 100.0 8.4E-37 2.9E-41 234.0 11.5 127 5-131 75-243 (323)
43 2q0v_A Ubiquitin-conjugating e 100.0 6.8E-36 2.3E-40 209.1 6.4 107 5-114 20-156 (156)
44 2a4d_A Ubiquitin-conjugating e 100.0 2.4E-34 8.2E-39 201.8 9.7 104 5-108 24-156 (160)
45 1jat_B Ubiquitin-conjugating e 100.0 1.7E-35 6E-40 203.4 3.4 107 1-111 2-138 (138)
46 2fo3_A Ubiquitin-conjugating e 100.0 5.5E-34 1.9E-38 192.9 10.1 95 5-101 5-123 (125)
47 2h2y_A Ubiquitin-conjugating e 100.0 2.4E-33 8.2E-38 192.3 11.8 93 5-99 19-135 (136)
48 2hlw_A Ubiquitin-conjugating e 100.0 1E-33 3.5E-38 200.5 6.8 104 5-108 34-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 2.8E-32 9.4E-37 186.9 10.5 86 8-95 24-136 (136)
50 1zuo_A Hypothetical protein LO 100.0 1.5E-32 5.1E-37 197.0 0.7 116 5-129 26-180 (186)
51 2f4w_A Ubiquitin-conjugating e 100.0 4.5E-30 1.5E-34 184.3 13.2 95 5-101 13-131 (187)
52 2z6o_A UFM1-conjugating enzyme 99.9 1.3E-23 4.3E-28 146.4 1.5 81 8-88 34-144 (172)
53 3r3q_A Suppressor protein STP2 99.8 8.2E-19 2.8E-23 122.7 9.5 90 9-101 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.6 2.8E-16 9.5E-21 107.4 1.0 70 7-81 35-132 (168)
55 3obq_A Tumor susceptibility ge 99.5 4.2E-14 1.4E-18 97.3 7.2 67 25-95 62-137 (146)
56 2ebm_A RWD domain-containing p 95.0 0.038 1.3E-06 36.1 4.8 46 7-52 11-77 (128)
57 2day_A Ring finger protein 25; 93.9 0.084 2.9E-06 34.4 4.6 23 31-53 60-82 (128)
58 2daw_A RWD domain containing p 93.8 0.33 1.1E-05 32.8 7.4 23 31-53 76-98 (154)
59 3zqs_A E3 ubiquitin-protein li 93.2 0.31 1E-05 34.3 6.6 69 10-94 5-86 (186)
60 2yz0_A Serine/threonine-protei 92.7 0.098 3.4E-06 34.5 3.4 23 31-53 63-85 (138)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 91.4 0.11 3.7E-06 34.2 2.4 22 31-52 64-85 (137)
62 2ebk_A RWD domain-containing p 91.2 0.13 4.6E-06 33.5 2.6 22 31-52 57-78 (128)
63 2dax_A Protein C21ORF6; RWD do 90.2 0.22 7.6E-06 33.5 3.1 23 31-53 74-96 (152)
64 2cwb_A Chimera of immunoglobul 85.1 0.17 5.9E-06 32.5 0.0 35 97-131 21-55 (108)
65 3u3c_B Paxillin LD2 peptide; 4 47.4 17 0.00059 16.5 2.2 19 6-24 5-23 (26)
66 2bum_A Protocatechuate 3,4-dio 46.5 17 0.00058 25.7 3.2 26 27-52 108-138 (209)
67 3fdr_A Tudor and KH domain-con 34.0 43 0.0015 20.0 3.3 34 4-37 3-50 (94)
68 3g9r_A Fusion complex of HIV-1 30.9 37 0.0013 17.4 2.1 15 6-20 28-42 (42)
69 2bum_B Protocatechuate 3,4-dio 29.6 27 0.00093 25.3 2.0 25 28-52 134-165 (241)
70 2xsu_A Catechol 1,2 dioxygenas 29.5 26 0.0009 26.4 2.0 25 28-52 187-229 (312)
71 2azq_A Catechol 1,2-dioxygenas 28.0 29 0.001 26.1 2.1 25 28-52 183-225 (311)
72 3t63_M 3,4-PCD, protocatechuat 27.9 31 0.001 25.0 2.0 25 28-52 133-164 (238)
73 1tmx_A Hydroxyquinol 1,2-dioxy 27.4 30 0.001 25.8 2.0 26 27-52 182-225 (293)
74 2rf4_B DNA-directed RNA polyme 27.0 28 0.00095 21.2 1.4 13 6-18 62-74 (87)
75 3t63_A 3,4-PCD, protocatechuat 26.0 38 0.0013 23.7 2.2 23 30-52 102-129 (200)
76 2boy_A 3-chlorocatechol 1,2-di 25.5 35 0.0012 24.9 2.0 25 28-52 153-195 (254)
77 1dmh_A 1,2-CTD, catechol 1,2-d 25.2 35 0.0012 25.7 2.0 25 28-52 186-228 (311)
78 3n9t_A PNPC; phospholipid bind 25.2 36 0.0012 25.3 2.1 25 28-52 180-222 (290)
79 2jrw_A Cyclic extended PEP.1; 24.0 28 0.00094 15.8 0.8 16 44-59 5-20 (26)
80 3hhy_A 1,2-CTD, catechol 1,2-d 23.3 38 0.0013 25.1 1.9 25 28-52 182-224 (280)
81 3th1_A Chlorocatechol 1,2-diox 22.8 64 0.0022 23.6 3.0 25 28-52 150-192 (260)
82 1h3o_B Transcription initiatio 22.0 90 0.0031 18.3 3.0 42 90-131 11-52 (76)
83 2f4m_B UV excision repair prot 20.3 1.1E+02 0.0037 17.1 3.0 20 103-122 37-56 (61)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=5.9e-45 Score=254.04 Aligned_cols=127 Identities=30% Similarity=0.681 Sum_probs=122.6
Q ss_pred cchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccc
Q 032785 4 GGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60 (133)
Q Consensus 4 ~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv 60 (133)
...|.+||++|+++++++++. |||+||+|++.|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 368999999999999998765 999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 032785 61 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 132 (133)
Q Consensus 61 ~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 132 (133)
+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|+++||.|
T Consensus 82 ~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 82 NKNGVICLDILKD--QWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp CTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEcccccC--CCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9999999999986 899999999999999999999999999999999999999999999999999999975
No 2
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=7.6e-45 Score=256.25 Aligned_cols=130 Identities=61% Similarity=1.188 Sum_probs=122.9
Q ss_pred CCcchHHHHHHHHHHHHHhCCCC----------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 032785 2 SGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 53 (133)
Q Consensus 2 s~~~~a~~Rl~~E~~~l~~~~~~----------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 53 (133)
+|+..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 46789999999999999998765 89999999999999999999999999999
Q ss_pred CcccccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 54 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 54 ~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
++|||||+.+|.||+++|...++|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||+
T Consensus 86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999885579999999999999999999999999999999999999999999999999999985
No 3
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=1.5e-44 Score=252.24 Aligned_cols=127 Identities=44% Similarity=0.835 Sum_probs=123.1
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 57 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 57 (133)
|| +.|.+||++|+++++++++. |||+||+|+++|.||++||++||+|+|.|++||
T Consensus 1 Ms--~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 78 (152)
T 2aak_A 1 MS--TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFH 78 (152)
T ss_dssp CC--CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence 88 78999999999999998765 999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 58 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 58 pnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 79 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 150 (152)
T 2aak_A 79 PNIYADGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150 (152)
T ss_dssp TTBCTTSBBCCGGGTT--SCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCEEechhhcC--CCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 9999999999999987 89999999999999999999999999999999999999999999999999999986
No 4
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=9.4e-45 Score=257.11 Aligned_cols=127 Identities=42% Similarity=0.776 Sum_probs=122.1
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 57 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 57 (133)
|| ..|.+||++|+++|+++++. |||+||+|+|.|.||++||++||+|+|.|++||
T Consensus 1 Ms--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 78 (169)
T 1ayz_A 1 MS--TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH 78 (169)
T ss_dssp -C--CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCcc
Confidence 78 78999999999999988765 999999999999999999999999999999999
Q ss_pred ccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 58 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 58 pnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|||+.+|.||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 79 PNI~~~G~ICl~iL~~--~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~ 150 (169)
T 1ayz_A 79 PNVYANGEICLDILQN--RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE 150 (169)
T ss_dssp TTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEeehhhcc--CCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 9999999999999987 89999999999999999999999999999999999999999999999999999974
No 5
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.2e-45 Score=257.00 Aligned_cols=129 Identities=33% Similarity=0.625 Sum_probs=121.3
Q ss_pred CcchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccc
Q 032785 3 GGGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 59 (133)
Q Consensus 3 ~~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 59 (133)
|+..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 81 (154)
T 2c2v_B 2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPN 81 (154)
T ss_dssp CSCSCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCc
Confidence 4488999999999999998765 99999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC-CC
Q 032785 60 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP-VI 133 (133)
Q Consensus 60 v~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~-~i 133 (133)
|+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||. +|
T Consensus 82 v~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~~~ 154 (154)
T 2c2v_B 82 VDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 154 (154)
T ss_dssp BCTTCBBCCHHHHT--SCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CccCCeEEchhccC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999986 89999999999999999999999999999999999999999999999999999997 44
No 6
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=1.9e-44 Score=251.18 Aligned_cols=127 Identities=35% Similarity=0.728 Sum_probs=122.4
Q ss_pred CcchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccc
Q 032785 3 GGGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 59 (133)
Q Consensus 3 ~~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 59 (133)
|+..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 1 ~s~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn 80 (150)
T 1z2u_A 1 GSHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence 5688999999999999988765 99999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 60 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 60 v~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 81 v~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 81 INSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp BCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCeEeeccccC--CCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999986 89999999999999999999999999999999999999999999999999999984
No 7
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=2.1e-44 Score=252.73 Aligned_cols=129 Identities=61% Similarity=1.167 Sum_probs=121.8
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC----------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEec
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFP 52 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~----------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~ 52 (133)
|| +.|.+||++|+++|+++++. |||+||+|++.|.||++||++||+|+|.
T Consensus 1 Ms--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 78 (157)
T 2gjd_A 1 MS--SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP 78 (157)
T ss_dssp ----CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence 78 78999999999999987653 9999999999999999999999999999
Q ss_pred cCcccccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 53 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 53 t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|++|||||+.+|.||+++|...++|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 79 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 79 AGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp TTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred CCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999885579999999999999999999999999999999999999999999999999999984
No 8
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=2e-44 Score=254.66 Aligned_cols=129 Identities=35% Similarity=0.667 Sum_probs=121.6
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 56 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 56 (133)
|| +.|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++|
T Consensus 1 M~--~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 78 (165)
T 2ucz_A 1 MS--KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSIL 78 (165)
T ss_dssp -C--HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCS
T ss_pred CC--hHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCc
Confidence 88 79999999999999988654 99999999999999999999999999999999
Q ss_pred cccccCCCceeccCCCC-----------CCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHH
Q 032785 57 HPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQ 125 (133)
Q Consensus 57 Hpnv~~~G~ic~~~l~~-----------~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~ 125 (133)
||||+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|
T Consensus 79 HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~ 158 (165)
T 2ucz_A 79 HPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLS 158 (165)
T ss_dssp CTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHH
T ss_pred cCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999999999942 2489999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC
Q 032785 126 AKQYPP 131 (133)
Q Consensus 126 ~~~~a~ 131 (133)
+++++.
T Consensus 159 ~~~~~~ 164 (165)
T 2ucz_A 159 ILKSLG 164 (165)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 999875
No 9
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-44 Score=253.70 Aligned_cols=124 Identities=27% Similarity=0.571 Sum_probs=120.4
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 91 (158)
T 1zdn_A 12 PHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCC
Confidence 78899999999999988765 9999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 130 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 130 (133)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|+++||
T Consensus 92 ~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 92 ANGEICVNVLKR--DWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp TTSBBCHHHHTT--TCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCEEehhhcCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999987 8999999999999999999999999999999999999999999999999999997
No 10
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.6e-44 Score=253.67 Aligned_cols=129 Identities=30% Similarity=0.603 Sum_probs=122.7
Q ss_pred CcchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccc
Q 032785 3 GGGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 59 (133)
Q Consensus 3 ~~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 59 (133)
|+..|.+||++|+++|+++++. |||+||+|+|+|.||++||++||+|+|.|++||||
T Consensus 1 gs~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 80 (169)
T 1yh2_A 1 GSMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN 80 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred CchHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcccc
Confidence 5688999999999999998765 99999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCC--CCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 60 VYPSGTVCLSILNE--DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 60 v~~~G~ic~~~l~~--~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|+.+|.||+++|.. .++|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 81 v~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 154 (169)
T 1yh2_A 81 IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHAR 154 (169)
T ss_dssp BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHcc
Confidence 99999999999982 1389999999999999999999999999999999999999999999999999999996
No 11
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=6.6e-44 Score=251.08 Aligned_cols=129 Identities=64% Similarity=1.210 Sum_probs=123.0
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC----------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEec
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH----------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFP 52 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~----------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~ 52 (133)
|| ..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.
T Consensus 4 M~--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~ 81 (161)
T 2grr_A 4 MS--GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE 81 (161)
T ss_dssp CC--HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred cc--HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence 66 78999999999999987653 8999999999999999999999999999
Q ss_pred cCcccccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 53 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 53 t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|++|||||+.+|.||+++|...++|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 82 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 160 (161)
T 2grr_A 82 PPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160 (161)
T ss_dssp SCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred cCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999875579999999999999999999999999999999999999999999999999999985
No 12
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=7e-44 Score=252.00 Aligned_cols=124 Identities=35% Similarity=0.741 Sum_probs=120.2
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 57899999999999988665 9999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP 130 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a 130 (133)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||
T Consensus 100 ~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 100 SQGAICLDILKD--QWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEcccccc--cCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999999999986 8999999999999999999999999999999999999999999999999999997
No 13
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=1.4e-43 Score=250.26 Aligned_cols=126 Identities=36% Similarity=0.746 Sum_probs=121.1
Q ss_pred cchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccc
Q 032785 4 GGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60 (133)
Q Consensus 4 ~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv 60 (133)
...|.+||++|+++++++++. |||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus 17 ~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV 96 (165)
T 2c4o_A 17 GSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 96 (165)
T ss_dssp CHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTB
T ss_pred CcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcC
Confidence 367899999999999988664 999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 61 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 61 ~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 97 ~~~G~ICl~iL~~--~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 97 NSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp CTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEeehhhcC--CCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999986 89999999999999999999999999999999999999999999999999999984
No 14
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=7.2e-44 Score=248.06 Aligned_cols=124 Identities=35% Similarity=0.711 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCC
Q 032785 7 ARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 63 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 63 (133)
+.+||++|+++++++++. |||+||+|++.|.||++||++||+|+|.|++|||||+.+
T Consensus 2 ~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 81 (149)
T 2r0j_A 2 IPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 81 (149)
T ss_dssp CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence 468999999999988765 999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 032785 64 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 132 (133)
Q Consensus 64 G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 132 (133)
|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.+
T Consensus 82 G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 82 GRICLDILKD--KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp CBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CEEechhcCC--CCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 9999999986 899999999999999999999999999999999999999999999999999999963
No 15
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=1.2e-43 Score=250.33 Aligned_cols=127 Identities=36% Similarity=0.668 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV 60 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv 60 (133)
+.|.+||++|+++++++++. |||+||+|++.|.||++||++||+|+|.|++|||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 57999999999999998765 999999999999999999999999999999999999
Q ss_pred cCCCceeccCCCC-----------CCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 032785 61 YPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129 (133)
Q Consensus 61 ~~~G~ic~~~l~~-----------~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~ 129 (133)
+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|++++
T Consensus 82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s 161 (164)
T 3h8k_A 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161 (164)
T ss_dssp CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 9999999999972 14899999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 032785 130 PP 131 (133)
Q Consensus 130 a~ 131 (133)
++
T Consensus 162 ~~ 163 (164)
T 3h8k_A 162 LG 163 (164)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 16
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=2e-43 Score=248.18 Aligned_cols=127 Identities=34% Similarity=0.652 Sum_probs=120.3
Q ss_pred CCCcchHHHHHHHHHHHHHhC----CCC----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccC
Q 032785 1 MSGGGIARGRLTEERKAWRKN----HPH----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG 54 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~----~~~----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 54 (133)
|| +.|.+||++|+++|+++ +.. |||+||+|+++|.||++||++||+|+|.|+
T Consensus 5 Ms--~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 82 (159)
T 2bep_A 5 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 82 (159)
T ss_dssp CC--HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ch--HHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence 56 78999999999999984 222 999999999999999999999999999999
Q ss_pred cccccccC-CCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 55 FFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 55 i~Hpnv~~-~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
+|||||+. +|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 83 i~HPni~~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 83 IWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp CCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCccCCCCCCCEEeChhhhc--cCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 99999995 99999999987 89999999999999999999999999999999999999999999999999999985
No 17
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-43 Score=248.50 Aligned_cols=124 Identities=35% Similarity=0.613 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..|.+||++|+++|+++++. |||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus 8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 87 (156)
T 2e2c_A 8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD 87 (156)
T ss_dssp CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCc
Confidence 57999999999999987654 9999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+| +|+++|.++||+|+++|++
T Consensus 88 ~~G~iCl~iL~~--~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~ 154 (156)
T 2e2c_A 88 QSGNICLDILKE--NWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS 154 (156)
T ss_dssp TTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred cCceEECccccc--cCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence 999999999987 899999999999999999999999999999999999 8999999999999999975
No 18
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.9e-43 Score=247.32 Aligned_cols=125 Identities=29% Similarity=0.589 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..|.+||++|+++|+++++. |||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus 3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 3 HMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp --CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEECCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred chHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 45899999999999988664 9999999999999999999999999999999999999
Q ss_pred CCCceeccCC-CCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 PSGTVCLSIL-NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~~G~ic~~~l-~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+|.||+++| .. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 83 ~~G~iCl~iL~~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~ 151 (155)
T 1wzv_A 83 ENGQICLPIISSE--NWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 151 (155)
T ss_dssp TTCBCCCGGGCTT--TCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred CCCeEeecCCCcc--CCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 44 89999999999999999999999999999999999999999999999999999986
No 19
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=1.2e-43 Score=248.34 Aligned_cols=125 Identities=32% Similarity=0.658 Sum_probs=120.5
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 83 (155)
T 1jat_A 4 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNID 83 (155)
T ss_dssp CSCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCC
Confidence 56789999999999988765 8999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 84 ~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~ 151 (155)
T 1jat_A 84 RLGRICLDVLKT--NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK 151 (155)
T ss_dssp TTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred CCCEEEchhhcc--CCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 999999999986 89999999999999999999999999999999999999999999999999999995
No 20
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=4.4e-43 Score=248.18 Aligned_cols=127 Identities=28% Similarity=0.569 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..+.+||++|+++|+++++. |||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus 13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 92 (167)
T 3fn1_B 13 SVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNIT 92 (167)
T ss_dssp CHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEECCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEECCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCC
Confidence 56899999999999998765 9999999999999999999999999999999999999
Q ss_pred CCCceeccCCCC----CCCCCccccHHHHHHHHHHhhcC-CCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 PSGTVCLSILNE----DNGWRPAITVKQILVGIQDLLDQ-PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~~G~ic~~~l~~----~~~W~p~~~i~~il~~i~~~l~~-p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+|.||+++|.. .++|+|+++|.+||.+|+++|.+ |+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 93 ~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~ 167 (167)
T 3fn1_B 93 ETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR 167 (167)
T ss_dssp TTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 999999999975 24799999999999999999999 79999999999999999999999999999999984
No 21
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=5.1e-43 Score=254.38 Aligned_cols=127 Identities=34% Similarity=0.652 Sum_probs=119.5
Q ss_pred CCCcchHHHHHHHHHHHHHhCC----CC----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccC
Q 032785 1 MSGGGIARGRLTEERKAWRKNH----PH----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG 54 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~----~~----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 54 (133)
|| +.|.+||++|+++|++++ .. |||+||+|++.|.||++||++||+|+|.|+
T Consensus 2 Ms--~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~ 79 (201)
T 3k9o_A 2 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 79 (201)
T ss_dssp ----CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred Cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccC
Confidence 78 789999999999998862 21 999999999999999999999999999999
Q ss_pred cccccccC-CCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 55 FFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 55 i~Hpnv~~-~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
||||||+. +|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 80 i~HPnv~~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 155 (201)
T 3k9o_A 80 IWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 155 (201)
T ss_dssp CCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred cccCCCcCCCCeeeCccccc--CCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 99999995 99999999987 89999999999999999999999999999999999999999999999999999986
No 22
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.2e-43 Score=252.20 Aligned_cols=125 Identities=31% Similarity=0.661 Sum_probs=118.0
Q ss_pred chHHHHHHHHHHHHHhCCC-------------C-----------------------CCCCCCEEEEEEEeCCCCCCCCCe
Q 032785 5 GIARGRLTEERKAWRKNHP-------------H-----------------------TDWEGGYFPLTLYFSEDYPSKPPK 48 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~-------------~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~ 48 (133)
..|.+||++|+++|+++++ . |||+||+|+|+|.||++||++||+
T Consensus 31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~ 110 (193)
T 2f4z_A 31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPK 110 (193)
T ss_dssp -CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCE
T ss_pred CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCe
Confidence 5689999999999999875 2 999999999999999999999999
Q ss_pred eEeccCccccccc-CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHH
Q 032785 49 CKFPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 127 (133)
Q Consensus 49 v~f~t~i~Hpnv~-~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~ 127 (133)
|+|.|+||||||+ .+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|++
T Consensus 111 V~F~T~i~HPNI~~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~t~ 188 (193)
T 2f4z_A 111 MKFVTKIWHPNISSQTGAICLDILKH--EWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTE 188 (193)
T ss_dssp EEESSCCCBTTBCTTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCcCCCCEEECccccc--cCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence 9999999999999 599999999987 8999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 032785 128 QYPP 131 (133)
Q Consensus 128 ~~a~ 131 (133)
+||.
T Consensus 189 ~ya~ 192 (193)
T 2f4z_A 189 TFAK 192 (193)
T ss_dssp HHCC
T ss_pred HHcc
Confidence 9996
No 23
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=1.3e-43 Score=246.84 Aligned_cols=123 Identities=32% Similarity=0.684 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccC
Q 032785 7 ARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP 62 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~ 62 (133)
|.+||++|+++++++++. |||+||+|+++|.||++||++||+|+|.|++|||||+.
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 579999999999987654 99999999999999999999999999999999999998
Q ss_pred -CCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 63 -SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 63 -~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus 82 ~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 VTGAICLDILKN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSCCBCCHHHHT--SCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCeEeCCcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99999999987 89999999999999999999999999999999999999999999999999999984
No 24
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-42 Score=248.06 Aligned_cols=124 Identities=31% Similarity=0.540 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..+.+||++|+++|+++++. |||+||+|+|+|.||++||++||+|+|.|++|||||+
T Consensus 29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 108 (179)
T 1i7k_A 29 GPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD 108 (179)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccc
Confidence 67899999999999987654 9999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+|.||+++|.. .|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+| +|+++|.++|++++++++.
T Consensus 109 ~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~ 175 (179)
T 1i7k_A 109 TQGNISLDILKE--KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT 175 (179)
T ss_dssp TTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred cCCeEEcccCcC--cCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhc
Confidence 999999999987 899999999999999999999999999999999999 9999999999999999986
No 25
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=3.3e-42 Score=248.64 Aligned_cols=125 Identities=34% Similarity=0.645 Sum_probs=120.1
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..|.+||++|+++|+++++. |||+||+|+|.|.||++||++||+|+|.|++|||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 45889999999999987654 8999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 127 ~~G~ICL~iL~~--~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 127 SQGVICLDILKD--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCceechhhhc--cCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 999999999987 89999999999999999999999999999999999999999999999999999984
No 26
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=1e-42 Score=254.80 Aligned_cols=125 Identities=32% Similarity=0.661 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
+.|.+||++|+++|+++++. |||+||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 22 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 101 (216)
T 2pwq_A 22 SKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNIS 101 (216)
T ss_dssp CHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCc
Confidence 67999999999999998765 9999999999999999999999999999999999999
Q ss_pred -CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 -PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 -~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 102 ~~~G~ICL~iL~~--~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~ 170 (216)
T 2pwq_A 102 SQTGAICLDVLKN--EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFAT 170 (216)
T ss_dssp TTTCBBCCHHHHH--HCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEchhhcc--cCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 589999999987 89999999999999999999999999999999999999999999999999999996
No 27
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.8e-43 Score=249.28 Aligned_cols=129 Identities=29% Similarity=0.640 Sum_probs=119.4
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC-------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH-------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~-------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
||+...|.+||++|+++|+..... |||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 20 ms~~~~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~ 99 (179)
T 2z5d_A 20 MSSPSPGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID 99 (179)
T ss_dssp ---CCHHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred CCCchHHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence 665557999999999999864322 9999999999999999999999999999999999999
Q ss_pred C-CCceeccCCCCCCCCCccccHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 P-SGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~-~G~ic~~~l~~~~~W~p~~~i~~il~~-i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
. +|.||+++|.. +|+|+++|.+||.+ |+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 100 ~~~G~ICL~iL~~--~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 100 EASGTVCLDVINQ--TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp TTTCBBCHHHHHH--HCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred CCCCeEecccccc--CCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 8 99999999986 89999999999999 999999999999999999999999999999999999999996
No 28
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=1.9e-42 Score=253.22 Aligned_cols=124 Identities=31% Similarity=0.672 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 6 IARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
.|.+||++|+++++++++. |||+||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~ 81 (215)
T 1tte_A 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81 (215)
T ss_dssp TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence 4789999999999988765 9999999999999999999999999999999999999
Q ss_pred C-CCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 P-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~-~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
. +|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|++|++.|.++||+|+++||.
T Consensus 82 ~~~G~ICL~iL~~--~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~ 150 (215)
T 1tte_A 82 SVTGAICLDILRN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 150 (215)
T ss_dssp SSSSCCCSSTTTC--CSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEECccCCC--CCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 9 99999999987 89999999999999999999999999999999999999999999999999999996
No 29
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=2.9e-43 Score=246.17 Aligned_cols=125 Identities=28% Similarity=0.612 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCC
Q 032785 7 ARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPS 63 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~ 63 (133)
|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++|||||+.+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~ 82 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEK 82 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEECCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEeCCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCC
Confidence 789999999999887654 999999999999999999999999999999999999999
Q ss_pred CceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 032785 64 GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV 132 (133)
Q Consensus 64 G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~~ 132 (133)
|.||+++|.. ++|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||..
T Consensus 83 G~iCl~iL~~-~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 83 GQVCLPVISA-ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp CBBCCTTTSS-SSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CEEECCCCCC-CCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 9999999973 2899999999999999999999999999999999999999999999999999999973
No 30
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=7.3e-42 Score=245.07 Aligned_cols=130 Identities=34% Similarity=0.641 Sum_probs=118.8
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 56 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 56 (133)
|+ +..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++|
T Consensus 3 m~-~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 81 (183)
T 3rz3_A 3 MG-SPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMW 81 (183)
T ss_dssp ---CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred Cc-chHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCc
Confidence 44 367999999999999998765 99999999999999999999999999999999
Q ss_pred cccccCCCceeccCCCC-----------CCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhh------CHHHHH
Q 032785 57 HPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ------DPAEYK 119 (133)
Q Consensus 57 Hpnv~~~G~ic~~~l~~-----------~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~------~~~~f~ 119 (133)
||||+++|.||+++|.. .++|+|+++|++||.+|+++|.+|+.++|+|.+|+.+|++ |+++|.
T Consensus 82 HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~ 161 (183)
T 3rz3_A 82 HPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYT 161 (183)
T ss_dssp CTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHH
T ss_pred cCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHH
Confidence 99999999999999973 2489999999999999999999999999999999999998 788999
Q ss_pred HHHHHHHHhcCC
Q 032785 120 RRVRQQAKQYPP 131 (133)
Q Consensus 120 ~~~~~~~~~~a~ 131 (133)
++||++|+++..
T Consensus 162 ~~v~~~v~~s~~ 173 (183)
T 3rz3_A 162 DIIRKQVLGTKV 173 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
No 31
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.1e-41 Score=254.26 Aligned_cols=127 Identities=34% Similarity=0.652 Sum_probs=120.4
Q ss_pred CCCcchHHHHHHHHHHHHHhCC----CC----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccC
Q 032785 1 MSGGGIARGRLTEERKAWRKNH----PH----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG 54 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~----~~----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~ 54 (133)
|| +.|.+||++||++|++++ .. |||+||+|+|.|.||++||++||+|+|.|+
T Consensus 54 Ms--~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~ 131 (253)
T 3e46_A 54 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK 131 (253)
T ss_dssp CC--HHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence 55 789999999999998762 11 999999999999999999999999999999
Q ss_pred cccccccC-CCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 55 FFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 55 i~Hpnv~~-~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
||||||+. +|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 132 i~HPNV~~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~ 207 (253)
T 3e46_A 132 IWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 207 (253)
T ss_dssp CCBTTBCTTTCBBCCGGGTT--CCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_pred CccCCccCCCCeeecccccC--CCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 99999995 99999999987 89999999999999999999999999999999999999999999999999999987
No 32
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=4.6e-42 Score=243.24 Aligned_cols=125 Identities=27% Similarity=0.508 Sum_probs=116.6
Q ss_pred CCCcchHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 032785 1 MSGGGIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 57 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 57 (133)
|+ ..|.+||++|+++|+++++. |||+||+|+|+|.||++||++||+|+|.|++||
T Consensus 20 M~--~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H 97 (169)
T 1yrv_A 20 MH--GRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH 97 (169)
T ss_dssp GG--CHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred cC--hHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence 56 67999999999999988764 999999999999999999999999999999999
Q ss_pred ccc-cCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHh
Q 032785 58 PNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128 (133)
Q Consensus 58 pnv-~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~ 128 (133)
||| +.+|.||+++|...++|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++ +++|++
T Consensus 98 PNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 98 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred CcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 999 7899999999983238999999999999999999999999999999999999999999999 888864
No 33
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=2.4e-41 Score=240.29 Aligned_cols=128 Identities=26% Similarity=0.408 Sum_probs=118.6
Q ss_pred CCCcchHHHHHHHHHHHHHh-C--------CC----------C----------------CCCCCCEEEEEEEeCCCCCCC
Q 032785 1 MSGGGIARGRLTEERKAWRK-N--------HP----------H----------------TDWEGGYFPLTLYFSEDYPSK 45 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~-~--------~~----------~----------------tpy~gg~f~~~i~fp~~yP~~ 45 (133)
|| ..|.+||++|+++|++ . +. . |||+||+|+|+|.||++||++
T Consensus 3 Ms--~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~ 80 (172)
T 2y9m_A 3 MA--DTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMN 80 (172)
T ss_dssp -C--HHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTS
T ss_pred Cc--HHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCC
Confidence 66 7899999999999987 3 22 1 999999999999999999999
Q ss_pred CCeeEecc-Cccccccc-CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhh-CHHHHHHHH
Q 032785 46 PPKCKFPQ-GFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ-DPAEYKRRV 122 (133)
Q Consensus 46 pP~v~f~t-~i~Hpnv~-~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~-~~~~f~~~~ 122 (133)
||+|+|.| ++|||||+ .+|.||+++|.. ++|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++ |+++|.++|
T Consensus 81 PP~v~f~t~~i~HPni~~~~G~iCl~iL~~-~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~ 159 (172)
T 2y9m_A 81 PPKISFMQNNILHCNVKSATGEICLNILKP-EEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIV 159 (172)
T ss_dssp CCEEEECTTSCCCTTEETTTTEECCGGGST-TTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHH
T ss_pred CCEEEEeeCCeecCCCcCCCCEEeccccCC-CCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHH
Confidence 99999999 99999996 799999999983 289999999999999999999999999999999999999 999999999
Q ss_pred HHHHHhcCC
Q 032785 123 RQQAKQYPP 131 (133)
Q Consensus 123 ~~~~~~~a~ 131 (133)
|+|+++++.
T Consensus 160 ~~~~~~~~~ 168 (172)
T 2y9m_A 160 KYFLAERER 168 (172)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998863
No 34
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=3.5e-42 Score=240.24 Aligned_cols=124 Identities=29% Similarity=0.579 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHhCCCC--------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccC-CC
Q 032785 6 IARGRLTEERKAWRKNHPH--------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SG 64 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~--------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G 64 (133)
.|.+||++|++++++.... |||+||+|++.|.||++||++||+|+|.|++|||||+. +|
T Consensus 2 sa~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G 81 (152)
T 2onu_A 2 TSLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG 81 (152)
T ss_dssp -CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTC
T ss_pred hHHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCC
Confidence 3779999999999876433 99999999999999999999999999999999999995 99
Q ss_pred ceeccCCCCCCCCCccccHHHHHHH-HHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 65 TVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 65 ~ic~~~l~~~~~W~p~~~i~~il~~-i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.||+++|.. +|+|+++|.+||.+ |++||.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 82 ~iCl~il~~--~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~ 147 (152)
T 2onu_A 82 SVCLDVINQ--TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYAS 147 (152)
T ss_dssp BBCHHHHHH--HCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred eEecccccc--cCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence 999999986 89999999999998 689999999999999999999999999999999999999996
No 35
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=1.4e-41 Score=241.46 Aligned_cols=122 Identities=37% Similarity=0.630 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHHHHhCCCC------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccc
Q 032785 4 GGIARGRLTEERKAWRKNHPH------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN 59 (133)
Q Consensus 4 ~~~a~~Rl~~E~~~l~~~~~~------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpn 59 (133)
+..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|++||||
T Consensus 15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPN 94 (172)
T 2awf_A 15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPN 94 (172)
T ss_dssp CCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCC
Confidence 478999999999999988765 99999999999999999999999999999999999
Q ss_pred ccCCCceeccCCCC-----------CCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHH-HHHHHHHHH
Q 032785 60 VYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPA-EYKRRVRQQ 125 (133)
Q Consensus 60 v~~~G~ic~~~l~~-----------~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~-~f~~~~~~~ 125 (133)
|+.+|.||+++|.. .++|+|+++|.+||.+|+++|.+|+.++|+|.+|+++|++|++ +|.++||+|
T Consensus 95 V~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~~ 172 (172)
T 2awf_A 95 VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARC 172 (172)
T ss_dssp BCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC-----------------------------
T ss_pred CCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHhC
Confidence 99999999999973 2489999999999999999999999999999999999999999 999999975
No 36
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=1.2e-41 Score=241.47 Aligned_cols=124 Identities=27% Similarity=0.509 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHhCCCC-------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccC-CCc
Q 032785 6 IARGRLTEERKAWRKNHPH-------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGT 65 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~-------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~-~G~ 65 (133)
.|.+||++|++++++++.. |||+||+|++.|.||++||++||+|+|.|++|||||+. +|.
T Consensus 12 ~~~~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp -CCHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 5789999999999987643 99999999999999999999999999999999999995 999
Q ss_pred eeccCCCCCCCCCccccHHHHHHHH-HHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 66 VCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 66 ic~~~l~~~~~W~p~~~i~~il~~i-~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
||+++|.. +|+|+++|.+||.+| +++|.+|+.++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 92 iCl~iL~~--~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 92 VCLDVINQ--TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp BCHHHHHH--HCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred Eecccccc--CCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 99999986 899999999999997 79999999999999999999999999999999999999986
No 37
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.7e-40 Score=232.43 Aligned_cols=121 Identities=27% Similarity=0.592 Sum_probs=114.1
Q ss_pred chHHHHHHHHHHHHHhCCCC----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccC
Q 032785 5 GIARGRLTEERKAWRKNHPH----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP 62 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~ 62 (133)
+.|.+||++|++++.. ++. |||+||+|++.|.||++||++||+|+|.|++|||||+.
T Consensus 5 ~~~~~RL~kEl~~l~~-~~~~~~~~~~~~~l~~w~~~igp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 83 (160)
T 1y8x_A 5 SAAQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 83 (160)
T ss_dssp CHHHHHHHHHHHTCCC-CTTEEEECSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred cHHHHHHHHHHHhcCC-CCCeEEEeccCCccceEEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCC
Confidence 5689999999999932 221 99999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHh
Q 032785 63 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128 (133)
Q Consensus 63 ~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~ 128 (133)
+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||++++.
T Consensus 84 ~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 84 EGNVCLNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp TCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred CCeEEcccchh--hccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 99999999986 89999999999999999999999999999999999999999999999999874
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.1e-40 Score=234.11 Aligned_cols=122 Identities=26% Similarity=0.556 Sum_probs=114.7
Q ss_pred cchHHHHHHHHHHHHHhCCCC----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 4 GGIARGRLTEERKAWRKNHPH----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 4 ~~~a~~Rl~~E~~~l~~~~~~----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
...|.+||++|+++|. .++. |||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus 24 ~~~~~~RL~kEl~~l~-~~~~i~~~~p~~~nl~~W~~~igP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~ 102 (180)
T 2nvu_C 24 ASAAQLRIQKDINELN-LPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 102 (180)
T ss_dssp CCHHHHHHHHHHHTCC-CCTTEEEECSSTTCTTEEEEEECCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcC-CCCCeEEEecccccccceEEEECCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCC
Confidence 3679999999999993 2221 9999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHh
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 128 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~ 128 (133)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||++++.
T Consensus 103 ~~G~iCl~iL~~--~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~ 167 (180)
T 2nvu_C 103 LEGNVALNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167 (180)
T ss_dssp TTSBBCCGGGTT--SCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred CCCcEEcccccc--cCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 999999999986 89999999999999999999999999999999999999999999999999985
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.8e-39 Score=256.29 Aligned_cols=125 Identities=34% Similarity=0.705 Sum_probs=121.6
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
+.|.+||++|+++|+++++. |||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 57999999999999998776 9999999999999999999999999999999999999
Q ss_pred CCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 62 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 62 ~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.+|.||+++|.. +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus 82 ~~G~iCl~il~~--~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~ 149 (399)
T 4ddg_A 82 SNGSISLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149 (399)
T ss_dssp TTCBBCCGGGTT--SCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTS
T ss_pred CCCeEeCccccc--CCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 999999999987 89999999999999999999999999999999999999999999999999999996
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=1.2e-39 Score=234.65 Aligned_cols=124 Identities=32% Similarity=0.547 Sum_probs=115.3
Q ss_pred cchHHHHHHHHHHHHHhCC---------------------------CCCCCCCCEEEEEEEeCCCCCCCCCeeEeccCcc
Q 032785 4 GGIARGRLTEERKAWRKNH---------------------------PHTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF 56 (133)
Q Consensus 4 ~~~a~~Rl~~E~~~l~~~~---------------------------~~tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~ 56 (133)
.+.|.+||++||++++..+ +.|||+||+|++.|.||++||++||+|+|.|++|
T Consensus 27 ~s~a~~RL~kEl~~l~~~~~i~~~~~~~p~~~nl~~~~~w~~~I~p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 106 (190)
T 3o2u_A 27 LSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIF 106 (190)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEEEEECTTCCCTTSCCEEEEEECCSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEecCCCCCccCCcCCeEEEEEcCCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcc
Confidence 3678999999999986210 1189999999999999999999999999999999
Q ss_pred cccccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 032785 57 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 129 (133)
Q Consensus 57 Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~ 129 (133)
||||+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|++.+
T Consensus 107 HPnV~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 107 HPNIDLKGNVCLNILRE--DWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp CTTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred cCCCCCCCeEechhccC--CCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 99999999999999986 899999999999999999999999999999999999999999999999999764
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=3.1e-38 Score=223.30 Aligned_cols=120 Identities=23% Similarity=0.512 Sum_probs=110.2
Q ss_pred CCCcchHHHHHHHHHHHHHhCC------------CC-----------------------CCCC--CCEEEEEEEeCCCCC
Q 032785 1 MSGGGIARGRLTEERKAWRKNH------------PH-----------------------TDWE--GGYFPLTLYFSEDYP 43 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~~------------~~-----------------------tpy~--gg~f~~~i~fp~~yP 43 (133)
|| ..|.+||++|+++|++++ +. |||+ ||.|++.|.||++||
T Consensus 5 Ms--~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP 82 (167)
T 4ds2_A 5 MK--NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYP 82 (167)
T ss_dssp CC--CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTT
T ss_pred cc--HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCC
Confidence 77 789999999999999876 22 8999 999999999999999
Q ss_pred CCCCeeEeccCcccccccCCCceeccCCCCCCCCCccccHHHHHH-HHHHhhcC--CCCCCCCCHHHHHHHhhCHHHHHH
Q 032785 44 SKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILV-GIQDLLDQ--PNPADPAQTDGYQLFIQDPAEYKR 120 (133)
Q Consensus 44 ~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~W~p~~~i~~il~-~i~~~l~~--p~~~~p~n~~a~~~~~~~~~~f~~ 120 (133)
++||+|+|.|++|||||+.+|.||+++|.. +|+|++++.++|. .|++++.+ |+.++|+|.+|+.+|++|+++|.+
T Consensus 83 ~~pP~v~f~t~i~HPnv~~~G~iCl~il~~--~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~ 160 (167)
T 4ds2_A 83 HEPPTVRFVTPVYSPLVTGEGGICDRMVND--FWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAA 160 (167)
T ss_dssp TSCCEEEESSCCCCSSCCTTSCCCTHHHHT--TCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHH
T ss_pred CCCCEEEEeCCcccccCCCCCEEEcccCcC--CCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHH
Confidence 999999999999999999999999999986 8999999999755 67777764 899999999999999999999999
Q ss_pred HHHH
Q 032785 121 RVRQ 124 (133)
Q Consensus 121 ~~~~ 124 (133)
+||+
T Consensus 161 ~vrr 164 (167)
T 4ds2_A 161 RVRR 164 (167)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 9983
No 42
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=8.4e-37 Score=233.97 Aligned_cols=127 Identities=32% Similarity=0.608 Sum_probs=116.9
Q ss_pred chHHHHHHHHHHHHHhCCCC---------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccC---
Q 032785 5 GIARGRLTEERKAWRKNHPH---------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--- 54 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~---------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~--- 54 (133)
..+.+||++|+++|+++++. |||+||+|+|.|.||++||++||+|+|.|+
T Consensus 75 ~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~ 154 (323)
T 3ceg_A 75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 154 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTT
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCC
Confidence 68999999999999887542 999999999999999999999999999998
Q ss_pred --cccccccCCCceeccCCCC-----CCCCCccc-cHHHHHHHHHHhhc--CCCCCCCCCHHH--HHHHhhCHHHHHHHH
Q 032785 55 --FFHPNVYPSGTVCLSILNE-----DNGWRPAI-TVKQILVGIQDLLD--QPNPADPAQTDG--YQLFIQDPAEYKRRV 122 (133)
Q Consensus 55 --i~Hpnv~~~G~ic~~~l~~-----~~~W~p~~-~i~~il~~i~~~l~--~p~~~~p~n~~a--~~~~~~~~~~f~~~~ 122 (133)
+|||||+.+|.||+++|.. .++|+|++ +|.+||.+|+++|. +|+.++|+|.++ +.+|.+|+..|.++|
T Consensus 155 ~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y~~~v 234 (323)
T 3ceg_A 155 SVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNI 234 (323)
T ss_dssp TCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHHHHHH
T ss_pred cccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHHHHHH
Confidence 9999999999999999973 24899999 89999999999995 788899999987 578999999999999
Q ss_pred HHHHHhcCC
Q 032785 123 RQQAKQYPP 131 (133)
Q Consensus 123 ~~~~~~~a~ 131 (133)
|+|+++||-
T Consensus 235 r~~t~k~A~ 243 (323)
T 3ceg_A 235 RQATVKWAM 243 (323)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999999984
No 43
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=6.8e-36 Score=209.10 Aligned_cols=107 Identities=23% Similarity=0.387 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHHHHhC-CCC--------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 032785 5 GIARGRLTEERKAWRKN-HPH--------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 57 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~-~~~--------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 57 (133)
..|.+||++|+++++++ ++. |||+||+|+++|.||++||++||+|+|.|++||
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~H 99 (156)
T 2q0v_A 20 VPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEM 99 (156)
T ss_dssp CCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEccccc
Confidence 56899999999999987 332 999999999999999999999999999999999
Q ss_pred ccccCCCce---eccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhC
Q 032785 58 PNVYPSGTV---CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD 114 (133)
Q Consensus 58 pnv~~~G~i---c~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~ 114 (133)
|||+.+|+| |+++|. +|+|+++|.+||.+|+++|.+|+.++|+|++|+.+|.+|
T Consensus 100 PNV~~~G~icisCL~iL~---~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 100 SCVDNCGRVIKNNLHILK---NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp TTBCTTSBBCGGGSHHHH---TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred CCCccCCeEehhhccccc---CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 999999999 888885 499999999999999999999999999999999998765
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=2.4e-34 Score=201.82 Aligned_cols=104 Identities=22% Similarity=0.316 Sum_probs=95.2
Q ss_pred chHHHHHHHHHHHHHhCCCC---------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 032785 5 GIARGRLTEERKAWRKNHPH---------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 57 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~---------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 57 (133)
..|.+||++|+++++++++. |||+||+|+++|.||++||++||+|+|.|++||
T Consensus 24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 103 (160)
T 2a4d_A 24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 103 (160)
T ss_dssp HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred chHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCcee
Confidence 56899999999999886432 999999999999999999999999999999999
Q ss_pred cccc-CCCceeccCCCCCCCCCccccHHHHHHHHHHhh-cCCCCCCCCCHHHH
Q 032785 58 PNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLL-DQPNPADPAQTDGY 108 (133)
Q Consensus 58 pnv~-~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l-~~p~~~~p~n~~a~ 108 (133)
|||+ .+|+||+++|...++|+|+++|++||.+|+++| .+|+.++|+|.||+
T Consensus 104 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 104 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred CCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 9999 699999999982228999999999999999999 57999999999987
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=1.7e-35 Score=203.37 Aligned_cols=107 Identities=27% Similarity=0.438 Sum_probs=95.1
Q ss_pred CCCcchHHHHHHHHHHHHHhC-CCC--------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEecc
Q 032785 1 MSGGGIARGRLTEERKAWRKN-HPH--------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ 53 (133)
Q Consensus 1 ms~~~~a~~Rl~~E~~~l~~~-~~~--------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t 53 (133)
||. ..+.+||++|+++++++ ++. |||+||+|+++|.||++||++||+|+|.|
T Consensus 2 m~~-~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t 80 (138)
T 1jat_B 2 MSK-VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS 80 (138)
T ss_dssp -CC-CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred cch-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEc
Confidence 663 57889999999999887 332 99999999999999999999999999999
Q ss_pred CcccccccCC-Cce--eccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHH
Q 032785 54 GFFHPNVYPS-GTV--CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 111 (133)
Q Consensus 54 ~i~Hpnv~~~-G~i--c~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~ 111 (133)
++|||||+.+ |.| |++++. +|+|+++|.+||.+|+++|.+|+.++|+|.+|+.+|
T Consensus 81 ~i~HPnv~~~~G~i~~cL~~l~---~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 81 KINLPCVNPTTGEVQTDFHTLR---DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp CCCCTTBCTTTCBBCTTSHHHH---TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred ccccCCEeCCCCEEeeecccCC---CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 9999999985 999 898875 599999999999999999999999999999987654
No 46
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-34 Score=192.93 Aligned_cols=95 Identities=29% Similarity=0.601 Sum_probs=82.0
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCc-ccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNV 60 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv 60 (133)
+.|.+||++|+++++++++. |||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 84 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV 84 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence 35889999999999988764 9999999999999999999999999999996 99999
Q ss_pred cCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCC
Q 032785 61 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 101 (133)
Q Consensus 61 ~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~ 101 (133)
+.+|+||+++|.. +|+|+++|.+||.+|+++|.+|+.+.
T Consensus 85 ~~~G~iCl~iL~~--~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 85 YSNGDICLSLLGD--DYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp CTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHC------
T ss_pred CCCCEEEchhcCC--CCCCCCcHHHHHHHHHHHHhCccccc
Confidence 9999999999986 89999999999999999999988754
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.4e-33 Score=192.26 Aligned_cols=93 Identities=29% Similarity=0.614 Sum_probs=88.0
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCc-ccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNV 60 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i-~Hpnv 60 (133)
+.|.+||++|+++++++++. |||+||+|+++|.||++||++||+|+|.|++ |||||
T Consensus 19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 98 (136)
T 2h2y_A 19 GNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHV 98 (136)
T ss_dssp TSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcC
Confidence 46899999999999988764 9999999999999999999999999999996 99999
Q ss_pred cCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCC
Q 032785 61 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 99 (133)
Q Consensus 61 ~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~ 99 (133)
+.+|.||+++|.. +|+|+++|.+||.+|+++|.+|+.
T Consensus 99 ~~~G~ICl~iL~~--~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 99 YSNGDICLSVLGD--DYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp CTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred CCCCEEECccccC--CCCCCCcHHHHHHHHHHHHhCcCc
Confidence 9999999999986 899999999999999999999875
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=200.50 Aligned_cols=104 Identities=22% Similarity=0.305 Sum_probs=94.7
Q ss_pred chHHHHHHHHHHHHHhCCCC---------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccc
Q 032785 5 GIARGRLTEERKAWRKNHPH---------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH 57 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~---------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~H 57 (133)
..+.+||++|+++++++++. |||+||+|+++|.||++||++||+|+|.|++||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 45899999999999885432 999999999999999999999999999999999
Q ss_pred cccc-CCCceeccCCCCCCCCCccccHHHHHHHHHHhhc-CCCCCCCCCHHHH
Q 032785 58 PNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD-QPNPADPAQTDGY 108 (133)
Q Consensus 58 pnv~-~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~-~p~~~~p~n~~a~ 108 (133)
|||+ .+|.||+++|...++|+|+++|.+||.+|+++|. +|+.++|+|.||+
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 9999 6999999999721289999999999999999996 5999999999986
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.98 E-value=2.8e-32 Score=186.89 Aligned_cols=86 Identities=38% Similarity=0.728 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhCCCC-------------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcc--cccc
Q 032785 8 RGRLTEERKAWRKNHPH-------------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF--HPNV 60 (133)
Q Consensus 8 ~~Rl~~E~~~l~~~~~~-------------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~--Hpnv 60 (133)
.+||++|+++++++++. |||+||+|+++|.||++||++||+|+|.|++| ||||
T Consensus 24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV 103 (136)
T 2a7l_A 24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV 103 (136)
T ss_dssp CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence 39999999999987543 89999999999999999999999999999999 9999
Q ss_pred cCCCceeccCCCCCCCCCccccHHHHHHHHHHhhc
Q 032785 61 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 95 (133)
Q Consensus 61 ~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~ 95 (133)
+.+|+||+++|.. +|+|+++|++||.+|+++|.
T Consensus 104 ~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 104 YSNGHICLSILTE--DWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp CTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHTC
T ss_pred CCCCeEEchhcCC--CCCCCCcHHHHHHHHHHHhC
Confidence 9999999999986 89999999999999999973
No 50
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.97 E-value=1.5e-32 Score=197.03 Aligned_cols=116 Identities=20% Similarity=0.387 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHHHhCC---CC------------------------CCCCC-----------CEEEEEEEeCCCCCCCC
Q 032785 5 GIARGRLTEERKAWRKNH---PH------------------------TDWEG-----------GYFPLTLYFSEDYPSKP 46 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~---~~------------------------tpy~g-----------g~f~~~i~fp~~yP~~p 46 (133)
..|.+||++||++|++++ +. |||+| |.|++.|.||++||++|
T Consensus 26 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~P 105 (186)
T 1zuo_A 26 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDP 105 (186)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCCCCCC
Confidence 789999999999999876 22 67988 89999999999999999
Q ss_pred CeeEeccCcccc-cccCCCceeccCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHH
Q 032785 47 PKCKFPQGFFHP-NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQ 125 (133)
Q Consensus 47 P~v~f~t~i~Hp-nv~~~G~ic~~~l~~~~~W~p~~~i~~il~~i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~ 125 (133)
|+|+|.|++||| ||+.+|.||+++|.. ++|+|+++|.+||.+|+++|.+|+... .|.+++.+|.+.++++
T Consensus 106 P~V~f~tpi~hPnnV~~~G~ICL~iL~~-~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~~~~~~ 176 (186)
T 1zuo_A 106 PFVRVVLPVLSGGYVLGGGALCMELLTK-QGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNLARAQQ 176 (186)
T ss_dssp CEEEEEESCEESTTBCGGGBBCCGGGST-TTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCHHHHHH
T ss_pred CeEEEeCCccCCCccCCCCcEEeccCCC-CCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhHHHHHH
Confidence 999999999999 699999999999974 289999999999999999998875432 3445566777777777
Q ss_pred HHhc
Q 032785 126 AKQY 129 (133)
Q Consensus 126 ~~~~ 129 (133)
+.+.
T Consensus 177 ~~~~ 180 (186)
T 1zuo_A 177 SYNS 180 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 51
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=4.5e-30 Score=184.32 Aligned_cols=95 Identities=28% Similarity=0.506 Sum_probs=80.5
Q ss_pred chHHHHHHHHHHHHHhCCCC-----------------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCccccccc
Q 032785 5 GIARGRLTEERKAWRKNHPH-----------------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY 61 (133)
Q Consensus 5 ~~a~~Rl~~E~~~l~~~~~~-----------------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~ 61 (133)
..|.+||++|+++|+++++. |||+||+|+++|.||++||++||+|+|.|+ ||+|+
T Consensus 13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~ 90 (187)
T 2f4w_A 13 TTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFK 90 (187)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cceec
Confidence 46889999999999988765 999999999999999999999999999999 99999
Q ss_pred CCCceeccCCCC-CCCCCccccHHHHHHHHHHhhcCCCCCC
Q 032785 62 PSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPNPAD 101 (133)
Q Consensus 62 ~~G~ic~~~l~~-~~~W~p~~~i~~il~~i~~~l~~p~~~~ 101 (133)
.+|.||+++|.. .++|+|+++|.+||.+|+++|.+|+++.
T Consensus 91 ~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~ 131 (187)
T 2f4w_A 91 CNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL 131 (187)
T ss_dssp TTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred cCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 999999999952 1389999999999999999998888754
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.87 E-value=1.3e-23 Score=146.43 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhCC-----------------CCCCCCCC----------EEEEEEEeCCCCCCCCCeeEeccC-ccccc
Q 032785 8 RGRLTEERKAWRKNH-----------------PHTDWEGG----------YFPLTLYFSEDYPSKPPKCKFPQG-FFHPN 59 (133)
Q Consensus 8 ~~Rl~~E~~~l~~~~-----------------~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f~t~-i~Hpn 59 (133)
.+||++|++.|++.. ..|+|+|| .|.++|.||++||.+||+|+|.+. +||||
T Consensus 34 ~~RL~eE~k~L~k~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpn 113 (172)
T 2z6o_A 34 VQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAK 113 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSS
T ss_pred HHHHHHHHHHHHHHhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCC
Confidence 999999999887752 22999999 999999999999999999999997 99999
Q ss_pred ccCCCceeccCCCCC--CCCCccccHHHHHH
Q 032785 60 VYPSGTVCLSILNED--NGWRPAITVKQILV 88 (133)
Q Consensus 60 v~~~G~ic~~~l~~~--~~W~p~~~i~~il~ 88 (133)
|+.+|+||++++... ..|+|.++|.++|.
T Consensus 114 mY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~ 144 (172)
T 2z6o_A 114 MYRGGKICLTDHFKPLWARNVPKFGLAHLMA 144 (172)
T ss_dssp BCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred CCCCCcEechhhccccccccCCccCHHHHHh
Confidence 999999999999542 24559999999985
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.78 E-value=8.2e-19 Score=122.75 Aligned_cols=90 Identities=22% Similarity=0.405 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhCCCC--------------------------CCCCCCE---EEEEEEeCCCCCCCCCeeEecc------
Q 032785 9 GRLTEERKAWRKNHPH--------------------------TDWEGGY---FPLTLYFSEDYPSKPPKCKFPQ------ 53 (133)
Q Consensus 9 ~Rl~~E~~~l~~~~~~--------------------------tpy~gg~---f~~~i~fp~~yP~~pP~v~f~t------ 53 (133)
+|..+|+.++...-+. ++|+||. |.+.|.||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 5677787777666554 9999999 8899999999999999998865
Q ss_pred -C---cc-cccccCCCceeccCCCCCCCCCc-cccHHHHHHHHHHhhcCCCCCC
Q 032785 54 -G---FF-HPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLDQPNPAD 101 (133)
Q Consensus 54 -~---i~-Hpnv~~~G~ic~~~l~~~~~W~p-~~~i~~il~~i~~~l~~p~~~~ 101 (133)
. |+ |||||.+|+||++.|. +|+| +.++.++|.+|+++|.+|+.+.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~---~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILH---AWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGG---SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCcccc---cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 1 77 9999999999999994 5999 5799999999999999999875
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.57 E-value=2.8e-16 Score=107.41 Aligned_cols=70 Identities=24% Similarity=0.447 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhC-----------------CCCCCCCCC----------EEEEEEEeCCCCCCCCCeeEeccC-cccc
Q 032785 7 ARGRLTEERKAWRKN-----------------HPHTDWEGG----------YFPLTLYFSEDYPSKPPKCKFPQG-FFHP 58 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~-----------------~~~tpy~gg----------~f~~~i~fp~~yP~~pP~v~f~t~-i~Hp 58 (133)
=..||..||..|-+. +..|+|.|+ .|.+++.||.+||..||.|+|.+. .+||
T Consensus 35 w~~RlkeEy~alI~yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~ 114 (168)
T 3kpa_A 35 WTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTV 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCS
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCc
Confidence 368999999988542 333999999 899999999999999999999995 8999
Q ss_pred cccCCCceeccCCCCCCCCCccc
Q 032785 59 NVYPSGTVCLSILNEDNGWRPAI 81 (133)
Q Consensus 59 nv~~~G~ic~~~l~~~~~W~p~~ 81 (133)
+++.+|+||+++. |+|.+
T Consensus 115 kmYr~GkICLdIh-----wkPlW 132 (168)
T 3kpa_A 115 KMYRGGKICMTTH-----FFPLW 132 (168)
T ss_dssp SEETTTEECCCTT-----HHHHH
T ss_pred cccCCCcEEeccc-----cchhh
Confidence 9999999999874 77764
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.50 E-value=4.2e-14 Score=97.29 Aligned_cols=67 Identities=19% Similarity=0.488 Sum_probs=60.2
Q ss_pred CCCCCCEEEE--EEEeCCCCCCCCCeeEeccC------cccccccCCCceeccCCCCCCCCCc-cccHHHHHHHHHHhhc
Q 032785 25 TDWEGGYFPL--TLYFSEDYPSKPPKCKFPQG------FFHPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLD 95 (133)
Q Consensus 25 tpy~gg~f~~--~i~fp~~yP~~pP~v~f~t~------i~Hpnv~~~G~ic~~~l~~~~~W~p-~~~i~~il~~i~~~l~ 95 (133)
.+|+|+.|.+ .|.||.+||++||.| |.++ ..|||||.+|+||++.|. +|++ ..++.+++..+++.|.
T Consensus 62 v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~---~W~~~~snL~~ll~~l~~~F~ 137 (146)
T 3obq_A 62 VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH---EWKHPQSDLLGLIQVMIVVFG 137 (146)
T ss_dssp EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH---TCCTTTCCHHHHHHHHHHHHH
T ss_pred eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc---ccCCCCCCHHHHHHHHHHHHh
Confidence 7899999994 999999999999999 6655 589999999999999995 4988 7899999999999994
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.04 E-value=0.038 Score=36.11 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCC----------------CCC-----CCCEEEEEEEeCCCCCCCCCeeEec
Q 032785 7 ARGRLTEERKAWRKNHPH----------------TDW-----EGGYFPLTLYFSEDYPSKPPKCKFP 52 (133)
Q Consensus 7 a~~Rl~~E~~~l~~~~~~----------------tpy-----~gg~f~~~i~fp~~yP~~pP~v~f~ 52 (133)
.......|+..|..--+. .+- +.-.+.+.+.||++||..||.+...
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~ 77 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIF 77 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEE
T ss_pred hHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEE
Confidence 456677888888766433 111 1236779999999999999998764
No 57
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=93.94 E-value=0.084 Score=34.39 Aligned_cols=23 Identities=26% Similarity=0.574 Sum_probs=20.0
Q ss_pred EEEEEEEeCCCCCCCCCeeEecc
Q 032785 31 YFPLTLYFSEDYPSKPPKCKFPQ 53 (133)
Q Consensus 31 ~f~~~i~fp~~yP~~pP~v~f~t 53 (133)
.+.+.|.+|++||..+|.|...+
T Consensus 60 ~~~L~~~~p~~YP~~~P~i~~~~ 82 (128)
T 2day_A 60 CFTLVLQVPAEYPHEVPQISIRN 82 (128)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEE
T ss_pred eEEEEEEcCCCCCCCCCCeEEEc
Confidence 56788999999999999998765
No 58
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=93.76 E-value=0.33 Score=32.82 Aligned_cols=23 Identities=13% Similarity=0.077 Sum_probs=19.9
Q ss_pred EEEEEEEeCCCCCCCCCeeEecc
Q 032785 31 YFPLTLYFSEDYPSKPPKCKFPQ 53 (133)
Q Consensus 31 ~f~~~i~fp~~yP~~pP~v~f~t 53 (133)
.+.+.|.+|.+||..+|.|...+
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~ 98 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRS 98 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEEC
T ss_pred eEEEEEEcCCCCCCCCCcEEEEe
Confidence 67889999999999999997654
No 59
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=93.18 E-value=0.31 Score=34.32 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhCCCC-------------CCCCCCEEEEEEEeCCCCCCCCCeeEeccCcccccccCCCceeccCCCCCCC
Q 032785 10 RLTEERKAWRKNHPH-------------TDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG 76 (133)
Q Consensus 10 Rl~~E~~~l~~~~~~-------------tpy~gg~f~~~i~fp~~yP~~pP~v~f~t~i~Hpnv~~~G~ic~~~l~~~~~ 76 (133)
+|.+|+.++-=+... .-=.|....++|.++.+||.++|.+...-|. |. .- .
T Consensus 5 ~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~------------~~--~ 68 (186)
T 3zqs_A 5 SLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPAESPDYFVDFPV--PF------------CA--S 68 (186)
T ss_dssp SHHHHHHHHCGGGEEEECTTSSEEEEEEECTTSCEEEEEEECCTTTTTSCCEEECCCSS--CC------------CC--C
T ss_pred HHHHHHHHhCCceeeeecCCccEEEEEEEeCCCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc------------cc--c
Confidence 577777777222111 2235778889999999999999988654332 11 12 6
Q ss_pred CCccccHHHHHHHHHHhh
Q 032785 77 WRPAITVKQILVGIQDLL 94 (133)
Q Consensus 77 W~p~~~i~~il~~i~~~l 94 (133)
|.+..++.+++...+..+
T Consensus 69 w~~~ssL~~v~~qF~~~L 86 (186)
T 3zqs_A 69 WTPQSSLISIYSQFLAAI 86 (186)
T ss_dssp CCTTCCHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHH
Confidence 999999999988777766
No 60
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.098 Score=34.54 Aligned_cols=23 Identities=22% Similarity=0.467 Sum_probs=19.4
Q ss_pred EEEEEEEeCCCCCCCCCeeEecc
Q 032785 31 YFPLTLYFSEDYPSKPPKCKFPQ 53 (133)
Q Consensus 31 ~f~~~i~fp~~yP~~pP~v~f~t 53 (133)
.+.+.+.+|++||..+|.|...+
T Consensus 63 ~~~L~~~~p~~YP~~~P~i~l~~ 85 (138)
T 2yz0_A 63 SITLHFAMTPMYPYTAPEIEFKN 85 (138)
T ss_dssp EEEEEEECCSSTTSSCCEEEEEC
T ss_pred EEEEEEECCCCCCCCCCeEEEec
Confidence 55688889999999999998754
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=91.44 E-value=0.11 Score=34.18 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.3
Q ss_pred EEEEEEEeCCCCCCCCCeeEec
Q 032785 31 YFPLTLYFSEDYPSKPPKCKFP 52 (133)
Q Consensus 31 ~f~~~i~fp~~yP~~pP~v~f~ 52 (133)
.+.+.|.||++||..+|.|...
T Consensus 64 ~~~L~v~~p~~YP~~~P~i~l~ 85 (137)
T 1ukx_A 64 QVELRVKCPPTYPDVVPEIDLK 85 (137)
T ss_dssp EEEEEECCCTTTTSSCCCCEEE
T ss_pred EEEEEEECCCCCCCCCCcEEEe
Confidence 5778899999999999999774
No 62
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.19 E-value=0.13 Score=33.47 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.5
Q ss_pred EEEEEEEeCCCCCCCCCeeEec
Q 032785 31 YFPLTLYFSEDYPSKPPKCKFP 52 (133)
Q Consensus 31 ~f~~~i~fp~~yP~~pP~v~f~ 52 (133)
.+.+.+.+|.+||..+|.|...
T Consensus 57 ~~~L~~~~p~~YP~~~P~i~l~ 78 (128)
T 2ebk_A 57 PLELVFHLPVNYPSCLPGISIN 78 (128)
T ss_dssp EEEEEEEECSSTTSSCCCCCCC
T ss_pred EEEEEEECCCCCCCCCCeEEEE
Confidence 5778888999999999998654
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=90.20 E-value=0.22 Score=33.47 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.5
Q ss_pred EEEEEEEeCCCCCCCCCeeEecc
Q 032785 31 YFPLTLYFSEDYPSKPPKCKFPQ 53 (133)
Q Consensus 31 ~f~~~i~fp~~yP~~pP~v~f~t 53 (133)
.+.+.|.+|.+||..||.|....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~ 96 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRS 96 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEEC
T ss_pred eEEEEEECCCCCCCCCCeEEEEc
Confidence 56788899999999999997654
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=85.07 E-value=0.17 Score=32.53 Aligned_cols=35 Identities=3% Similarity=-0.072 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 97 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 97 p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
.....|.+...+++|.+|++.|.+.+|.|+.-+|.
T Consensus 21 ~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~ 55 (108)
T 2cwb_A 21 ETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT 55 (108)
T ss_dssp -----------------------------------
T ss_pred cccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence 34567999999999999999999999999966553
No 65
>3u3c_B Paxillin LD2 peptide; 4-helix bundle, focal adhesion, tyrosine kinase, transferase-signaling protein complex; 3.70A {Homo sapiens}
Probab=47.40 E-value=17 Score=16.45 Aligned_cols=19 Identities=32% Similarity=0.263 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHhCCCC
Q 032785 6 IARGRLTEERKAWRKNHPH 24 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~~~~~ 24 (133)
..+.||.-|+...+.+|+.
T Consensus 5 seldrlllelnavqhnpps 23 (26)
T 3u3c_B 5 SELDRLLLELNAVQHNPPS 23 (26)
T ss_pred HHHHHHHHHHhhhccCCCC
Confidence 3578999999999999884
No 66
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A*
Probab=46.46 E-value=17 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.376 Sum_probs=22.5
Q ss_pred CCCCEEEEEEEeCCCCCC-----CCCeeEec
Q 032785 27 WEGGYFPLTLYFSEDYPS-----KPPKCKFP 52 (133)
Q Consensus 27 y~gg~f~~~i~fp~~yP~-----~pP~v~f~ 52 (133)
=+.|.|.|+-.+|--||. .||.|.|.
T Consensus 108 d~~G~y~F~TI~Pg~yp~~~G~~R~~HIH~~ 138 (209)
T 2bum_A 108 FGTGFWSFNTIKPGAVPGRKGSTQAPHISLI 138 (209)
T ss_dssp TTTCCEEEEEECCCCCBCSTTCBCCCCEEEE
T ss_pred CCCcEEEEEEEccCcccCCCCCccCcEEEEE
Confidence 357999999999999998 79998874
No 67
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=34.01 E-value=43 Score=19.97 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=22.9
Q ss_pred cchHHHHHHHHHHHHHhCCCC------------CCC--CCCEEEEEEE
Q 032785 4 GGIARGRLTEERKAWRKNHPH------------TDW--EGGYFPLTLY 37 (133)
Q Consensus 4 ~~~a~~Rl~~E~~~l~~~~~~------------tpy--~gg~f~~~i~ 37 (133)
++..+.+|+.|+.+.-+.... -.| +|.+|+..|.
T Consensus 3 ~s~~Le~Lm~~m~~~y~~~~~~~~~~~~G~~c~a~~~~d~~wyRA~I~ 50 (94)
T 3fdr_A 3 RSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVL 50 (94)
T ss_dssp --CHHHHHHHHHHHHHTTCCCCCCCCCTTCEEEEEETTTTEEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEE
Confidence 566889999999999776533 333 5666776665
No 68
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=30.91 E-value=37 Score=17.44 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHh
Q 032785 6 IARGRLTEERKAWRK 20 (133)
Q Consensus 6 ~a~~Rl~~E~~~l~~ 20 (133)
..++||.+|++.+.+
T Consensus 28 ~~~~~~~~~~~~~~~ 42 (42)
T 3g9r_A 28 SKIKRIENEIKRIKK 42 (42)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 468999999998753
No 69
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B*
Probab=29.58 E-value=27 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.619 Sum_probs=21.8
Q ss_pred CCCEEEEEEEeCCCCC-------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP-------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP-------~~pP~v~f~ 52 (133)
+.|.|.|+-.+|--|| ..||.|.|.
T Consensus 134 ~~G~y~F~TI~Pg~Yp~~~~~~~~RpaHIH~~ 165 (241)
T 2bum_B 134 DNGYYVFRTIKPGPYPWRNRINEWRPAHIHFS 165 (241)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEecCCccccCCCCCCCcCceEEEE
Confidence 5799999999999998 479999885
No 70
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A*
Probab=29.49 E-value=26 Score=26.36 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|+-.+|--|| ..||.|.|.
T Consensus 187 ~~G~y~F~TI~Pg~Y~ip~dGp~G~lL~~~grh~~RpaHIH~~ 229 (312)
T 2xsu_A 187 VNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYF 229 (312)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECcCcccCCCCCcHHHHHHHhhccCCCCceEEEE
Confidence 6899999999999998 568888874
No 71
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida}
Probab=27.98 E-value=29 Score=26.08 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|+=.+|--|| ..||.|.|.
T Consensus 183 ~~G~y~F~TI~Pg~Y~~p~dGp~g~lL~~~grh~~RpaHIHf~ 225 (311)
T 2azq_A 183 AEGRYRARSIVPSGYGCDPQGPTQECLDLLGRHGQRPAHVHFF 225 (311)
T ss_dssp TTCEEEEEEECCCCEECCTTSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEEcCCCcCCCCCCcHHHHHHhhhccCCCCceEEEE
Confidence 5799999999999998 568999884
No 72
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ...
Probab=27.85 E-value=31 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCCEEEEEEEeCCCCCC-------CCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYPS-------KPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP~-------~pP~v~f~ 52 (133)
+.|.|.|+=.+|--||. .||.|.|.
T Consensus 133 ~~G~y~F~TI~Pg~Yp~p~~~~~~Rp~HIHf~ 164 (238)
T 3t63_M 133 SDGYYSFRTIKPGPAPWRNGPNDWRPAHIYFG 164 (238)
T ss_dssp TTSEEEEEEECCCCEEESSSTTEEECSEEEEE
T ss_pred CCceEEEEEECCcCccCCCCCCCCcCCeEEEE
Confidence 57999999999999986 78999885
No 73
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex}
Probab=27.38 E-value=30 Score=25.78 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=21.7
Q ss_pred CCCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 27 WEGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 27 y~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
=+.|.|.|+=.+|--|| .+||.|.|.
T Consensus 182 D~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 225 (293)
T 1tmx_A 182 GPDGGYAFWAITPTPYPIPHDGPVGRMLAATGRSPMRASHLHFM 225 (293)
T ss_dssp CTTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCCceEEEEEECCCcccCCCCCchHHHHHhcccCCCCCceEEEE
Confidence 35799999999999998 458998874
No 74
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=26.96 E-value=28 Score=21.18 Aligned_cols=13 Identities=15% Similarity=0.133 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHH
Q 032785 6 IARGRLTEERKAW 18 (133)
Q Consensus 6 ~a~~Rl~~E~~~l 18 (133)
..+|||++||+-|
T Consensus 62 sQLKRvQRdlrGL 74 (87)
T 2rf4_B 62 SQLKRIQRDFKGL 74 (87)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCC
Confidence 4689999998865
No 75
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ...
Probab=26.01 E-value=38 Score=23.73 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.5
Q ss_pred CEEEEEEEeCCCCCCC-----CCeeEec
Q 032785 30 GYFPLTLYFSEDYPSK-----PPKCKFP 52 (133)
Q Consensus 30 g~f~~~i~fp~~yP~~-----pP~v~f~ 52 (133)
|.|.|+=.+|--||.. ||.|.|.
T Consensus 102 G~~~F~TI~Pg~Y~~~~g~~rp~HIH~~ 129 (200)
T 3t63_A 102 GEWTLHTVKPGVVNNAAGVPMAPHINIS 129 (200)
T ss_dssp CSEEEEEECCCCEECTTSCEECSCEEEE
T ss_pred CEEEEEEECCcCcCCCCCCccCCEEEEE
Confidence 9999999999999987 8888774
No 76
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus}
Probab=25.46 E-value=35 Score=24.87 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=20.9
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|+=.+|--|| .+||.|.|.
T Consensus 153 ~~G~y~F~TI~Pg~Y~~p~dGp~G~ll~~~grh~~RpaHIH~~ 195 (254)
T 2boy_A 153 ENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWI 195 (254)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECCEEEEE
T ss_pred CCceEEEEEECCccccCCCCCcHHHHHHhcccccCCCceEEEE
Confidence 5799999999998887 468998874
No 77
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A*
Probab=25.23 E-value=35 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=21.4
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|+=.+|--|| .+||.|.|.
T Consensus 186 ~~G~y~F~TI~Pg~Yp~p~dgp~g~lL~~~grh~~RpaHIHf~ 228 (311)
T 1dmh_A 186 ENGQYRVRTILPAGYGCPPEGPTQQLLNQLGRHGNRPAHIHYF 228 (311)
T ss_dssp TTSEEEEEEECCCCEECCTTSHHHHHHHHTTCCCEECSEEEEE
T ss_pred CCceEEEEEEcCCcccCCCCCcHHHHHHhcccCCCCCceEEEE
Confidence 5799999999999997 468999885
No 78
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida}
Probab=25.22 E-value=36 Score=25.34 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.5
Q ss_pred CCCEEEEEEEeCCCCCC------------------CCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYPS------------------KPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP~------------------~pP~v~f~ 52 (133)
+.|.|.|+=.+|--||. .||.|.|.
T Consensus 180 ~~G~y~F~TI~Pg~Yp~p~dGp~G~ll~~~grh~~RpaHIHf~ 222 (290)
T 3n9t_A 180 NDGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFM 222 (290)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHHTCCCEECCEEEEE
T ss_pred CCceEEEEEeCCCCcCCCCCCcHHHHHHhccCCCCcCceEEEE
Confidence 57999999999999983 68999884
No 79
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=24.05 E-value=28 Score=15.76 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=8.7
Q ss_pred CCCCeeEeccCccccc
Q 032785 44 SKPPKCKFPQGFFHPN 59 (133)
Q Consensus 44 ~~pP~v~f~t~i~Hpn 59 (133)
...|.-.|....|||-
T Consensus 5 mtlpenyfserpyhpp 20 (26)
T 2jrw_A 5 MTLPENYFSERPYHPP 20 (26)
T ss_dssp CCCSSSSCCSSSCCSC
T ss_pred cccchhhcccCCCCCC
Confidence 3334444666667763
No 80
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A*
Probab=23.32 E-value=38 Score=25.08 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=20.7
Q ss_pred CCCEEEEEEEeCCCCC------------------CCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDYP------------------SKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~yP------------------~~pP~v~f~ 52 (133)
+.|.|.|+=.+|--|| ..||.|.|.
T Consensus 182 ~dG~y~F~TI~Pg~Yp~p~dGp~G~lL~~~grh~~RpaHIH~~ 224 (280)
T 3hhy_A 182 EEGRYEITTIQPAPYQIPTDGPTGQFIEAQNGHPWRPAHLHLI 224 (280)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCCEECSCEEEE
T ss_pred CCceEEEEEECCcCcCCCCCCcHHHHHHhcCCCCCCCcEEEEE
Confidence 4699999999998887 468888874
No 81
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida}
Probab=22.82 E-value=64 Score=23.60 Aligned_cols=25 Identities=16% Similarity=0.390 Sum_probs=20.1
Q ss_pred CCCEEEEEEEeCCCC------------------CCCCCeeEec
Q 032785 28 EGGYFPLTLYFSEDY------------------PSKPPKCKFP 52 (133)
Q Consensus 28 ~gg~f~~~i~fp~~y------------------P~~pP~v~f~ 52 (133)
+.|.|.|+=.+|.-| |.+||.|.|.
T Consensus 150 ~~G~y~F~TI~P~~Ypip~dGp~g~ll~~~gr~~~RpaHIHf~ 192 (260)
T 3th1_A 150 SQGNYRVRTTMPVPYQIPYEGPTGRLLGHLGSHTWRPAHVHFK 192 (260)
T ss_dssp TTSEEEEEEECCCCEECCCSSHHHHHHHHTTCCSEECCEEEEE
T ss_pred CCCEEEEEEECCCCCCCCCCCcHHHHHHhcCCCCCCCCeEEEE
Confidence 578999999999666 5578888885
No 82
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=21.97 E-value=90 Score=18.32 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=30.3
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 032785 90 IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 131 (133)
Q Consensus 90 i~~~l~~p~~~~p~n~~a~~~~~~~~~~f~~~~~~~~~~~a~ 131 (133)
|+.++..-++...+++++..+..+=.+.|...+-..+.+.|.
T Consensus 11 L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAK 52 (76)
T 1h3o_B 11 LQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLAR 52 (76)
T ss_dssp HHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443335567789999998888888999888887776553
No 83
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=20.30 E-value=1.1e+02 Score=17.13 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=17.4
Q ss_pred CCHHHHHHHhhCHHHHHHHH
Q 032785 103 AQTDGYQLFIQDPAEYKRRV 122 (133)
Q Consensus 103 ~n~~a~~~~~~~~~~f~~~~ 122 (133)
.|++...+..+|.++|.+..
T Consensus 37 ~nP~l~~~I~~n~e~Fl~ll 56 (61)
T 2f4m_B 37 ENPQLLQQISQHQEHFIQML 56 (61)
T ss_dssp HCHHHHHHHHHSHHHHHHHH
T ss_pred HCHHHHHHHHHCHHHHHHHH
Confidence 48999999999999998765
Done!