BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032786
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active
Fragment Of Sec31
Length = 772
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 54 DINSARFLWKSIPSTIKDSRAEVV 77
DIN RF W PST D+ + VV
Sbjct: 12 DINGVRFTWNVFPSTRSDANSNVV 35
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 54 DINSARFLWKSIPSTIKDSRAEVV 77
DIN RF W PST D+ + VV
Sbjct: 8 DINGVRFTWNVFPSTRSDANSNVV 31
>pdb|3V9G|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
pdb|3V9G|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase
Length = 566
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 TDALASKSYEKI---ADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWK 63
T LAS + +I A + +++ V A+G +F D HL G + + + + LWK
Sbjct: 240 TAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWK 299
Query: 64 SIPSTI 69
+ +
Sbjct: 300 QVAQNL 305
>pdb|3V9H|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
pdb|3V9H|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352a
Length = 566
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 TDALASKSYEKI---ADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWK 63
T LAS + +I A + +++ V A+G +F D HL G + + + + LWK
Sbjct: 240 TAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWK 299
Query: 64 SIPSTI 69
+ +
Sbjct: 300 QVAQNL 305
>pdb|3V9I|A Chain A, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|B Chain B, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|C Chain C, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
pdb|3V9I|D Chain D, Crystal Structure Of Human 1-Pyrroline-5-Carboxylate
Dehydrogenase Mutant S352l
Length = 566
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 TDALASKSYEKI---ADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWK 63
T LAS + +I A + +++ V A+G +F D HL G + + + + LWK
Sbjct: 240 TAMLASYAVYRILREAGLPPNIIQFVPADGPLFGDTVTSSEHLCGINFTGSVPTFKHLWK 299
Query: 64 SIPSTI 69
+ +
Sbjct: 300 QVAQNL 305
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 33 GIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKD 71
GI+F+D+ YV + + V+ + +W+ I + IKD
Sbjct: 215 GILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKD 253
>pdb|2GK4|A Chain A, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
pdb|2GK4|B Chain B, The Crystal Structure Of The Dna/pantothenate Metabolism
Flavoprotein From Streptococcus Pneumoniae
Length = 232
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 4 SPLTDALASKSYE-KIA--DICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
S L + L+ ++++ KI+ D L LK + I EW IHL+G+ + D+
Sbjct: 112 SNLKEFLSKQNHQAKISSTDEVQVLFLKKTPKIISLVKEWNPTIHLIGFKLLVDVTEDHL 171
Query: 61 LWKSIPSTIKDSRAEVVAAWKIGQ 84
+ + S IK+ +A+++ A + Q
Sbjct: 172 VDIARKSLIKN-QADLIIANDLTQ 194
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 1 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
MDF+ + + L + +YE ++C D+ L +F + Y Y + + F
Sbjct: 62 MDFATVRETLEAGNYESPMELCKDVRL-------IFSNSKAYTPSKRSRIYSMSLRLSAF 114
Query: 61 LWKSIPSTIKDSRA 74
+ I S + D ++
Sbjct: 115 FEEHISSVLSDYKS 128
>pdb|3S4T|A Chain A, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|B Chain B, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|C Chain C, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|D Chain D, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|E Chain E, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|F Chain F, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|G Chain G, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
pdb|3S4T|H Chain H, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
500288)from Polaromonas Sp. Js666
Length = 348
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 24 DLMLKVAAEGIVFQDEWPY--VIHLLGYYYVNDINSA---RFLWKSIPSTIKDSRAE 75
D +L++ A+ I+F +WP+ + H ++ I+ A + W + + K +RAE
Sbjct: 272 DAILEIGADRILFSTDWPFENIDHAADWFENTSISEADRKKIGWGNAQNLFKLNRAE 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,155,510
Number of Sequences: 62578
Number of extensions: 155508
Number of successful extensions: 536
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 12
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)