BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032786
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43255|CSN8_ARATH COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8
PE=1 SV=1
Length = 197
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 83/121 (68%), Positives = 102/121 (84%)
Query: 1 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
MD SP+ +ALA+KS++KIADICD LML+VA+EGI + D+WPY IHLLGY+YV+D +SARF
Sbjct: 1 MDLSPVKEALAAKSFDKIADICDTLMLQVASEGIEYHDDWPYAIHLLGYFYVDDCDSARF 60
Query: 61 LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTP 120
LWK IP+ IK+ + EVVAAW IGQ LWT DYAGVY+AIRG+DWSQEA+ +VAAFS T
Sbjct: 61 LWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGYDWSQEAKDMVAAFSDLYTK 120
Query: 121 R 121
R
Sbjct: 121 R 121
>sp|Q5RF54|CSN8_PONAB COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2
SV=1
Length = 209
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
S++K+ D C++ L+ A GI P LL Y + ND+N+AR+LWK IP IK +
Sbjct: 12 SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67
Query: 73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126
+E+ W +GQ +W RD+ G+Y I WS+ Q ++ A ++T R F+
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFAL 120
>sp|Q99627|CSN8_HUMAN COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1
SV=1
Length = 209
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
S++K+ D C++ L+ A GI P LL Y + ND+N+AR+LWK IP IK +
Sbjct: 12 SFKKLLDQCENQELE-APGGIATP---PVYGQLLALYLLHNDMNNARYLWKRIPPAIKSA 67
Query: 73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126
+E+ W +GQ +W RD+ G+Y I WS+ Q ++ A ++T R F+
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFAL 120
>sp|Q6P4Z9|CSN8_RAT COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8
PE=2 SV=1
Length = 209
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
S+ K+ D C++ L+ A GI P LL Y + ND+N+AR+LWK IP IK +
Sbjct: 12 SFRKLLDQCENQELE-APGGIATP---PVYGQLLALYLLQNDMNNARYLWKRIPPAIKSA 67
Query: 73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126
+E+ W +GQ +W RD+ G+Y I WS+ Q ++ A ++T R F+
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFAL 120
>sp|Q8VBV7|CSN8_MOUSE COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1
SV=1
Length = 209
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 14 SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYV-NDINSARFLWKSIPSTIKDS 72
S+ K+ D C++ L+ A GI P LL Y + ND+N+AR+LWK IP IK +
Sbjct: 12 SFRKLLDQCENQELE-APGGIATP---PVYGQLLALYLLQNDMNNARYLWKRIPPAIKSA 67
Query: 73 RAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126
+E+ W +GQ +W RD+ G+Y I WS+ Q ++ A ++T R F+
Sbjct: 68 NSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALR-DATRRRAFAL 120
>sp|Q6GQA6|CSN8_XENLA COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2
SV=2
Length = 195
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 45 HLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDW 103
LL Y + ND+N+AR+LWK IPS IK S +E+ W++GQ +W RD+ G+Y +I + W
Sbjct: 41 QLLALYLLHNDLNNARYLWKRIPSAIKSSHSELGGIWEVGQKIWQRDFPGIYTSISAYQW 100
Query: 104 SQEAQALVAAFSGNSTPR 121
S+ Q ++ A + R
Sbjct: 101 SENIQQIMEAVRDATQQR 118
>sp|Q7ZUZ0|CSN8_DANRE COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2
SV=1
Length = 191
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 46 LLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQ 105
L+ Y ND+N+AR+LWK IP IK + E+ A W +GQ +W RD+ G+Y AI + WS+
Sbjct: 39 LVLYLLHNDMNNARYLWKRIPQAIKTANPEMAAIWAVGQRIWQRDFPGIYSAIAAYQWSE 98
Query: 106 EAQALVAAFSGNSTPRG 122
++ A ++ R
Sbjct: 99 SILPVMEALRESTRRRA 115
>sp|Q6P637|CSN8_XENTR COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8
PE=2 SV=1
Length = 193
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 45 HLLGYYYV-NDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDW 103
LL Y + ND+N+AR+LWK IP IK + +E+ W++GQ +W RD+ G+Y +I W
Sbjct: 39 QLLALYLLHNDMNNARYLWKRIPPAIKSAHSELGGIWEVGQKIWQRDFPGIYTSISACQW 98
Query: 104 SQEAQALVAAFSGNSTPRGCF 124
S+ Q ++ A ++T R F
Sbjct: 99 SEAIQPVMEAVR-DATRRRAF 118
>sp|P68396|CSN8_BRAOL COP9 signalosome complex subunit 8 (Fragment) OS=Brassica oleracea
GN=CSN8 PE=1 SV=1
Length = 23
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 23/23 (100%)
Query: 86 LWTRDYAGVYDAIRGFDWSQEAQ 108
LWTRDYAGVY+AIRGFDWSQ+A+
Sbjct: 1 LWTRDYAGVYEAIRGFDWSQDAK 23
>sp|Q75K24|CSN8_DICDI COP9 signalosome complex subunit 8 OS=Dictyostelium discoideum
GN=csn8 PE=1 SV=1
Length = 196
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 1 MDFSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARF 60
M F+ + + ++SK+++ I D C ++ ++ I + Y ++LL Y ND+ +A+
Sbjct: 1 MAFTEIANLISSKNFKAILDYCQ--RQEIESKNIDLIKSY-YGVYLLSYLINNDLINAKH 57
Query: 61 LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAI 98
LWK IP+ K S ++ + I + + + Y ++
Sbjct: 58 LWKRIPNDFKQSNQQLKNIYTIIKSISQTNPTITYTSL 95
>sp|Q7KTH8|CSN8_DROME COP9 signalosome complex subunit 8 OS=Drosophila melanogaster
GN=CSN8 PE=1 SV=1
Length = 182
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 49 YYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQ 108
Y Y N + A+ LW +P+ ++D + E++ + L +YA + I+ ++WS+ +
Sbjct: 35 YLYQNKLADAKLLWMRVPANLRDDK-ELIQLNLLNIALQNNNYADFFKHIK-YEWSERVK 92
Query: 109 ALV 111
+ V
Sbjct: 93 SPV 95
>sp|Q7Z408|CSMD2_HUMAN CUB and sushi domain-containing protein 2 OS=Homo sapiens GN=CSMD2
PE=1 SV=2
Length = 3487
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 75 EVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSCFCPLIRQ 133
E A IG H D V+D +R +D E+ L+ SG + P+ S F ++ Q
Sbjct: 1303 EAEAGCTIGLHFLVFDTEEVHDVLRIWDGPVESGVLLKELSGPALPKDLHSTFNSVVLQ 1361
>sp|F4I096|MED13_ARATH Mediator of RNA polymerase II transcription subunit 13 OS=Arabidopsis
thaliana GN=MED13 PE=1 SV=1
Length = 1921
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 39 EWPYVIHLL-GYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYD 96
E P + HLL Y +++ + K++PS KDSR V W + DY G YD
Sbjct: 1776 ESPPLAHLLHSKGYAIPLSTGFVVSKAVPSMRKDSRINVKEEWPSVLSVSLIDYYGGYD 1834
>sp|P15303|SEC23_YEAST Protein transport protein SEC23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SEC23 PE=1 SV=1
Length = 768
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 54 DINSARFLWKSIPSTIKDSRAEVV 77
DIN RF W PST D+ + VV
Sbjct: 8 DINGVRFTWNVFPSTRSDANSNVV 31
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,777,493
Number of Sequences: 539616
Number of extensions: 1845615
Number of successful extensions: 5170
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5158
Number of HSP's gapped (non-prelim): 16
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)