Query 032786
Match_columns 133
No_of_seqs 103 out of 112
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:17:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rz4_A Eukaryotic translation 98.3 3.8E-07 1.3E-11 72.2 3.4 70 50-126 77-146 (226)
2 4b0z_A RPN12, 26S proteasome r 98.2 5.4E-05 1.8E-09 59.3 13.8 125 1-126 9-184 (229)
3 4b4t_T 26S proteasome regulato 96.2 0.026 8.9E-07 45.2 9.1 85 40-124 104-191 (274)
4 3t5v_A Nuclear mRNA export pro 92.4 0.64 2.2E-05 38.0 8.6 90 33-126 109-214 (316)
5 3dai_A ATPase family AAA domai 61.9 16 0.00055 25.4 5.3 29 1-29 51-79 (130)
6 4g26_A Pentatricopeptide repea 58.6 34 0.0011 28.6 7.6 87 6-99 112-199 (501)
7 3d7c_A General control of amin 48.3 7.2 0.00025 26.5 1.5 29 1-29 48-76 (112)
8 2i7k_A Bromodomain-containing 47.7 7.1 0.00024 27.0 1.4 29 1-29 49-77 (117)
9 3mb4_A Protein polybromo-1; PB 46.5 7.8 0.00027 26.8 1.5 29 1-29 62-90 (124)
10 3p1f_A CREB-binding protein; s 46.1 8.3 0.00029 26.4 1.5 29 1-29 55-83 (119)
11 2dat_A Possible global transcr 45.1 8.4 0.00029 26.7 1.4 29 1-29 60-88 (123)
12 2d9e_A Peregrin; four-helix bu 45.1 8.5 0.00029 26.7 1.5 29 1-29 48-76 (121)
13 3nxb_A CAT eye syndrome critic 44.4 9.2 0.00031 26.0 1.5 29 1-29 57-85 (116)
14 1e6i_A Transcriptional activat 44.3 9.2 0.00032 26.4 1.5 29 1-29 54-82 (121)
15 2ouo_A HUNK1 protein, bromodom 44.0 9.3 0.00032 26.8 1.5 29 1-29 68-96 (130)
16 2oss_A HUNK1 protein, bromodom 43.8 9.4 0.00032 26.6 1.5 29 1-29 64-92 (127)
17 3g0l_A Hwalp4, bromodomain adj 43.3 9.5 0.00032 26.0 1.5 29 1-29 54-82 (117)
18 3jvl_A Bromodomain-containing 42.0 10 0.00035 26.0 1.5 29 1-29 55-83 (120)
19 3iu5_A Protein polybromo-1; PB 41.5 11 0.00036 25.8 1.5 29 1-29 52-80 (116)
20 3k2j_A Protein polybromo-1; PB 41.1 11 0.00037 26.5 1.5 29 1-29 64-92 (130)
21 4g26_A Pentatricopeptide repea 40.8 75 0.0026 26.5 6.9 66 5-75 146-211 (501)
22 3mb3_A PH-interacting protein; 40.4 11 0.00039 26.3 1.5 29 1-29 62-90 (135)
23 3rcw_A Bromodomain-containing 39.2 12 0.00042 26.1 1.5 29 1-29 54-82 (135)
24 3tlp_A Protein polybromo-1; PB 39.1 12 0.00042 26.6 1.5 29 1-29 72-100 (150)
25 3q2e_A Bromodomain and WD repe 38.9 13 0.00043 25.7 1.5 29 1-29 51-79 (123)
26 2grc_A Probable global transcr 38.8 12 0.00042 26.1 1.5 29 1-29 59-87 (129)
27 3hme_A Bromodomain-containing 38.1 13 0.00043 25.8 1.5 29 1-29 54-82 (123)
28 3ljw_A Protein polybromo-1; al 37.8 11 0.00039 25.8 1.1 29 1-29 55-83 (120)
29 3mqm_A Probable histone-lysine 37.6 11 0.00039 26.0 1.1 29 1-29 56-84 (126)
30 2ri7_A Nucleosome-remodeling f 37.3 12 0.00042 26.9 1.3 29 1-29 113-141 (174)
31 4alg_A Bromodomain-containing 34.9 15 0.00053 26.4 1.5 29 1-29 75-103 (154)
32 2dkw_A Hypothetical protein KI 34.2 12 0.0004 26.5 0.8 29 1-29 48-76 (131)
33 3uv4_A Second bromodomain of h 32.9 17 0.00059 26.4 1.5 29 1-29 71-99 (158)
34 2wpv_A GET4, UPF0363 protein Y 30.5 65 0.0022 25.9 4.7 74 33-108 182-275 (312)
35 4b4t_R RPN7, 26S proteasome re 29.7 35 0.0012 27.9 3.1 61 69-129 279-344 (429)
36 4b4t_P 26S proteasome regulato 28.8 2.3E+02 0.0079 23.2 7.9 87 10-98 148-241 (445)
37 3lqh_A Histone-lysine N-methyl 28.8 21 0.00072 26.8 1.4 29 1-29 105-133 (183)
38 3qwp_A SET and MYND domain-con 27.7 2.5E+02 0.0084 22.8 9.3 113 4-116 292-421 (429)
39 2kjg_A Archaeal protein SSO690 27.1 29 0.00098 23.9 1.7 27 3-29 9-35 (99)
40 2yyn_A Transcription intermedi 26.2 27 0.00094 24.4 1.6 29 1-29 60-90 (135)
41 2xev_A YBGF; tetratricopeptide 26.1 1.1E+02 0.0039 18.5 6.7 87 7-96 10-97 (129)
42 3fkm_X Signaling protein; brom 26.1 23 0.00078 25.8 1.1 29 1-29 64-92 (166)
43 3cqc_A Nuclear pore complex pr 25.8 32 0.0011 27.1 2.0 30 41-70 35-65 (270)
44 2npu_A FKBP12-rapamycin comple 25.5 1.8E+02 0.0062 20.5 7.3 76 5-89 42-122 (126)
45 3mkq_B Coatomer subunit alpha; 25.1 1.5E+02 0.005 22.0 5.5 21 42-62 92-112 (177)
46 3o36_A Transcription intermedi 24.5 29 0.00098 25.3 1.4 29 1-29 121-151 (184)
47 2ro1_A Transcription intermedi 24.4 29 0.001 25.7 1.5 29 1-29 115-146 (189)
48 3txn_A 26S proteasome regulato 24.0 1.7E+02 0.0057 24.2 6.2 59 72-130 252-314 (394)
49 3qml_C Protein SLS1, nucleotid 23.9 3E+02 0.01 22.5 8.8 98 2-117 23-126 (315)
50 2ion_A PDCD4, programmed cell 22.9 1.3E+02 0.0045 21.4 4.8 45 15-67 86-130 (152)
51 2ff4_A Probable regulatory pro 22.7 2.5E+02 0.0084 22.4 6.9 70 6-81 178-252 (388)
52 3uv5_A Transcription initiatio 20.2 40 0.0014 26.1 1.5 29 1-29 55-83 (265)
53 3uv5_A Transcription initiatio 20.1 40 0.0014 26.1 1.5 29 1-29 178-206 (265)
No 1
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=98.28 E-value=3.8e-07 Score=72.15 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=62.7
Q ss_pred HHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHhchhhhhhhhh
Q 032786 50 YYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126 (133)
Q Consensus 50 Ll~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~r~rt~~L~ 126 (133)
+...|.+.+++| ||++++ .+++++.+|.|++.||+++|+++|+++++ +..+.+.|..|.+.+|++.+.++
T Consensus 77 ~p~~DF~~~l~L---Ip~~~~-~~~~I~~i~~L~~~L~~~~y~~fW~~l~~---~~~l~~~i~gf~dsIR~~I~~~i 146 (226)
T 1rz4_A 77 LPHTDFTLCKCM---IDQAHQ-EERPIRQILYLGDLLETCHFQAFWQALDE---NMDLLEGITGFEDSVRKFICHVV 146 (226)
T ss_dssp TTSTHHHHHHHT---SCHHHH-TSTTHHHHHHHHHHHHTTCHHHHHHHSCT---TCHHHHTSTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHh---CChhhh-cCHHHHHHHHHHHHHHcCCHHHHHHHHhc---ChhHHHHHhHHHHHHHHHHHHHH
Confidence 447899999999 899997 68999999999999999999999999986 36788999999999999988765
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.18 E-value=5.4e-05 Score=59.26 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=96.1
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHh--hhhh----------------------------------------------hc
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLM--LKVA----------------------------------------------AE 32 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~E--L~~~----------------------------------------------~~ 32 (133)
||...+.++.+++||++....+..+- |..- .+
T Consensus 9 ~~l~~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~ 88 (229)
T 4b0z_A 9 LDLNHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHD 88 (229)
T ss_dssp CCSHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 67888999999999998777776541 1100 01
Q ss_pred CC-cCCC-chhHHHHHHHHHHhhcchhHHHHHhhCChh-hhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHH
Q 032786 33 GI-VFQD-EWPYVIHLLGYYYVNDINSARFLWKSIPST-IKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQA 109 (133)
Q Consensus 33 G~-a~~~-~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~-lk~~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~ 109 (133)
|. .++. .-+.+-+|+.+|.+|++.+-.-...++|.+ +.+.||-++-..+|-+++++.||..+++..++.++. ....
T Consensus 89 ~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~-~~~~ 167 (229)
T 4b0z_A 89 SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP-EFSY 167 (229)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCG-GGHH
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccc-hHHH
Confidence 11 1111 145677788889999999999899999864 444689999999999999999999999999987664 4678
Q ss_pred HHHHHHhchhhhhhhhh
Q 032786 110 LVAAFSGNSTPRGCFSC 126 (133)
Q Consensus 110 lv~~l~~~~r~rt~~L~ 126 (133)
+|..|.+.+|.+++.-+
T Consensus 168 ~~~~l~~~vR~~~l~~i 184 (229)
T 4b0z_A 168 FMKIVMSMVRNEIATCA 184 (229)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887643
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.026 Score=45.25 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=72.1
Q ss_pred hhHHHHHHHHHHhhcchhHHHHHhhCChhhhh--ccHHHHHHHHHHHHHHccChHHHHHHhhCCCCC-HHHHHHHHHHHh
Q 032786 40 WPYVIHLLGYYYVNDINSARFLWKSIPSTIKD--SRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWS-QEAQALVAAFSG 116 (133)
Q Consensus 40 ~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~--~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws-~~~~~lv~~l~~ 116 (133)
-+.+-+|+-+|.+|++.+=.-...++|...++ .||-++-...|-+++.+.+|..+|+..+..+.+ +....+|..|.+
T Consensus 104 e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~ 183 (274)
T 4b4t_T 104 KLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKS 183 (274)
T ss_dssp HHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 45666777777899999999899999975432 589999999999999999999999999988875 566899999999
Q ss_pred chhhhhhh
Q 032786 117 NSTPRGCF 124 (133)
Q Consensus 117 ~~r~rt~~ 124 (133)
.+|.+.+.
T Consensus 184 ~iR~~a~~ 191 (274)
T 4b4t_T 184 AIRDEIAK 191 (274)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.64 Score=38.00 Aligned_cols=90 Identities=11% Similarity=-0.040 Sum_probs=64.2
Q ss_pred CCcCCCc-hhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHHHH---------------ccChHHHHH
Q 032786 33 GIVFQDE-WPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHLW---------------TRDYAGVYD 96 (133)
Q Consensus 33 G~a~~~~-~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~alW---------------~rdy~~vy~ 96 (133)
|...|.. -+.+-+++.+|...|+. -.-.++|.++++ +|.++-...+-+++. .++|..+|+
T Consensus 109 ~~~~~ne~EF~aY~lL~~l~~~~~~---~~l~~Lp~~i~~-~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFr 184 (316)
T 3t5v_A 109 GGTCPNEAEFRAYALLSKIRDPQYD---ENIQRLPKHIFQ-DKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQ 184 (316)
T ss_dssp TCCCTTHHHHHHHHHHHSTTCTHHH---HHHTTSCHHHHT-SHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhccchHH---HHHHhCCHHHhc-CHHHHHHHHHHHHHHhcccccccccccccccchHHHHHH
Confidence 4434432 46666666666544432 345789999995 799999999888764 268999999
Q ss_pred HhhCCCCCHHHHHHHHHHHhchhhhhhhhh
Q 032786 97 AIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126 (133)
Q Consensus 97 al~~~~Ws~~~~~lv~~l~~~~r~rt~~L~ 126 (133)
.+++..=|-....+|..+....|.+++.-+
T Consensus 185 L~~~~~~pyL~aclle~~~~~vR~~AL~~i 214 (316)
T 3t5v_A 185 LMQSPSLPLLMGFFLQMHLTDIRFYALRAL 214 (316)
T ss_dssp HHTCTTSCHHHHHHHGGGHHHHHHHHHHHH
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 998633556667888888888888887654
No 5
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=61.93 E-value=16 Score=25.42 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+..|-.
T Consensus 51 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 79 (130)
T 3dai_A 51 MDLSSVISKIDLHKYLTVKDYLRDIDLIC 79 (130)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999986
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=58.62 E-value=34 Score=28.65 Aligned_cols=87 Identities=17% Similarity=0.110 Sum_probs=56.2
Q ss_pred HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHH
Q 032786 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQH 85 (133)
Q Consensus 6 i~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~a 85 (133)
|..+...|++++...+.+++.- .|.. |+..-|..++-+|.-.+++..|.-++++|.+.=- .|.....-.+..+
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~----~g~~-Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~--~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKA----FGIQ-PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV--VPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----TTCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--CCCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHH----cCCC-CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHH
Confidence 5667788888888888877652 3543 5556799999999999999999999988765422 2333333334443
Q ss_pred HH-ccChHHHHHHhh
Q 032786 86 LW-TRDYAGVYDAIR 99 (133)
Q Consensus 86 lW-~rdy~~vy~al~ 99 (133)
.- .++...+++.++
T Consensus 185 ~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 185 SMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHH
Confidence 33 235555554443
No 7
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=48.25 E-value=7.2 Score=26.48 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+.+|.|..+.++..+.+|-.
T Consensus 48 mdL~tI~~kl~~~~Y~s~~~f~~Dv~li~ 76 (112)
T 3d7c_A 48 IDLKTMTERLRSRYYVTRKLFVADLQRVI 76 (112)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 8
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=47.74 E-value=7.1 Score=27.01 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+.+|.|..+.++..+.+|-.
T Consensus 49 MDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~ 77 (117)
T 2i7k_A 49 MDFSTMKEKIKNNDYQSIEELKDNFKLMC 77 (117)
T ss_dssp CCHHHHHHHHTTTSCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999986
No 9
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=46.53 E-value=7.8 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.527 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+..|-.
T Consensus 62 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 62 MDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 10
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=46.08 E-value=8.3 Score=26.37 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+..|-.
T Consensus 55 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (119)
T 3p1f_A 55 MDLSTIKRKLDTGQYQEPWQYVDDVWLMF 83 (119)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 11
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.14 E-value=8.4 Score=26.67 Aligned_cols=29 Identities=24% Similarity=0.586 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+..+.|..+.++..+.+|-.
T Consensus 60 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 60 VDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 12
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.13 E-value=8.5 Score=26.66 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+.+|-.
T Consensus 48 mdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 76 (121)
T 2d9e_A 48 MDFFTMKQNLEAYRYLNFDDFEEDFNLIV 76 (121)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 13
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=44.43 E-value=9.2 Score=26.03 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+.+|..
T Consensus 57 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 85 (116)
T 3nxb_A 57 MDISSMEKKLNGGLYCTKEEFVNDMKTMF 85 (116)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 14
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=44.26 E-value=9.2 Score=26.42 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+.+|-.
T Consensus 54 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 82 (121)
T 1e6i_A 54 MDLSTMEIKLESNKYQKMEDFIYDARLVF 82 (121)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999986
No 15
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=44.03 E-value=9.3 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.467 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
|||+.|..-|.+|.|..+.++.++..|-.
T Consensus 68 mDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 96 (130)
T 2ouo_A 68 MDMSTIKSKLEAREYRDAQEFGADVRLMF 96 (130)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 16
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=43.79 E-value=9.4 Score=26.65 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
|||+.|..-+.+|.|..+.++..+..|-.
T Consensus 64 mdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 92 (127)
T 2oss_A 64 MDMGTIKKRLENNYYWNAQECIQDFNTMF 92 (127)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 17
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=43.30 E-value=9.5 Score=26.00 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+..|-.
T Consensus 54 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (117)
T 3g0l_A 54 MDFSTIREKLSSGQYPNLETFALDVRLVF 82 (117)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 18
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=42.01 E-value=10 Score=25.95 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+..|-.
T Consensus 55 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (120)
T 3jvl_A 55 MDMSTIKSKLESREYRDAQEFGADVRLMF 83 (120)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 19
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=41.49 E-value=11 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+.+|.|..+.++..+..|-.
T Consensus 52 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 52 IDLMKIQQKLKMEEYDDVNLLTADFQLLF 80 (116)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 20
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=41.11 E-value=11 Score=26.50 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-|.+|.|..+.++..+..|-.
T Consensus 64 MdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 64 ISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 21
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=40.83 E-value=75 Score=26.48 Aligned_cols=66 Identities=8% Similarity=0.028 Sum_probs=52.9
Q ss_pred hHHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHH
Q 032786 5 PLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAE 75 (133)
Q Consensus 5 ~i~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~e 75 (133)
-|..+...|++++...+.+++.- .|+. |+..-|..++-+|.-.++...|.-+.+++-+...+-++.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~----~G~~-Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVE----SEVV-PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----TTCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh----cCCC-CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 36677889999999888887752 3553 666679999999999999999999999997776654443
No 22
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=40.40 E-value=11 Score=26.29 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
|||+.|..-|..|.|..+.++..+..|-.
T Consensus 62 mdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (135)
T 3mb3_A 62 MDFATVRETLEAGNYESPMELCKDVRLIF 90 (135)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 23
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=39.25 E-value=12 Score=26.13 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+..|.|..+.++..+..|-.
T Consensus 54 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (135)
T 3rcw_A 54 MDFATMRKRLEAQGYKNLHEFEEDFDLII 82 (135)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 24
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=39.07 E-value=12 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-|..|.|..+.+++.+..|-.
T Consensus 72 mdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 100 (150)
T 3tlp_A 72 MDLKIIEHNIRNDKYAGEEGMIEDMKLMF 100 (150)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 25
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=38.87 E-value=13 Score=25.69 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-|..|.|..+.++..+..|-.
T Consensus 51 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 79 (123)
T 3q2e_A 51 MDFGTVRETLDAGNYDSPLEFCKDIRLIF 79 (123)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 26
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=38.77 E-value=12 Score=26.08 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
|||+.|+.-+..|.|..+.++..+..|-.
T Consensus 59 mdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 59 VDFKKIKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 27
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=38.13 E-value=13 Score=25.77 Aligned_cols=29 Identities=24% Similarity=0.575 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+..|.|..+.++..+.+|-.
T Consensus 54 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 82 (123)
T 3hme_A 54 MDFGTMKDKIVANEYKSVTEFKADFKLMC 82 (123)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999986
No 28
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=37.83 E-value=11 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+.+|.|..+.++..+..|-.
T Consensus 55 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 55 IDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp CCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 29
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=37.62 E-value=11 Score=25.98 Aligned_cols=29 Identities=10% Similarity=0.311 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+.+|.|..+.++..+..|-.
T Consensus 56 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 56 LDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp CCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999886
No 30
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=37.26 E-value=12 Score=26.91 Aligned_cols=29 Identities=21% Similarity=0.500 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-|.+|.|..+.++..+..|-.
T Consensus 113 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 141 (174)
T 2ri7_A 113 MDLATMEERVQRRYYEKLTEFVADMTKIF 141 (174)
T ss_dssp CCHHHHHHHHHTTCCCBHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999885
No 31
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=34.92 E-value=15 Score=26.45 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
|||+.|..-|..+.|..+.++..+..|-.
T Consensus 75 MDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 103 (154)
T 4alg_A 75 MDMGTIKRRLENNYYWAASECMQDFNTMF 103 (154)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999886
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.19 E-value=12 Score=26.46 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+..|.|..+.++..+..|-.
T Consensus 48 mDL~tI~~kl~~~~Y~s~~~f~~D~~Li~ 76 (131)
T 2dkw_A 48 MDLSTVITKIDKHNYLTAKDFLKDIDLIC 76 (131)
T ss_dssp CCHHHHHHHHHTTCCCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 33
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=32.91 E-value=17 Score=26.37 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-|..|.|..+.++..+..|-.
T Consensus 71 MDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 99 (158)
T 3uv4_A 71 MDLETIRKNISKHKYQSRESFLDDVNLIL 99 (158)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 34
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=30.53 E-value=65 Score=25.95 Aligned_cols=74 Identities=8% Similarity=-0.005 Sum_probs=52.1
Q ss_pred CCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhh--------------------hccHHHHHHHHHHHHHHccChH
Q 032786 33 GIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIK--------------------DSRAEVVAAWKIGQHLWTRDYA 92 (133)
Q Consensus 33 G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk--------------------~~~~el~~iw~l~~alW~rdy~ 92 (133)
|-.+..+.+.+.-++-||..+++..|+.+....-+.+. .+.|.+.=+|-+..++-.++ .
T Consensus 182 ~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~p~~pllnF~~lLl~t~e~~~-~ 260 (312)
T 2wpv_A 182 IEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFIEKFHPKYEKIDKNGYEIVFFEDYSDLNFLQLLLITCQTKD-K 260 (312)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHCCCEEEEEETTEEEEEESSCHHHHHHHHHHHHHHHTC-H
T ss_pred CCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhhcccccccccccccCCCCCCCCccHHHHHHHHHHHhcCC-H
Confidence 54444557899999999999999999988765433221 13588888998888765544 5
Q ss_pred HHHHHhhCCCCCHHHH
Q 032786 93 GVYDAIRGFDWSQEAQ 108 (133)
Q Consensus 93 ~vy~al~~~~Ws~~~~ 108 (133)
.+|+.|+. ...+.++
T Consensus 261 ~lF~~L~~-~Y~~~L~ 275 (312)
T 2wpv_A 261 SYFLNLKN-HYLDFSQ 275 (312)
T ss_dssp HHHHHHHH-HCHHHHH
T ss_pred HHHHHHHH-HHHHHHH
Confidence 67888874 4555544
No 35
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.75 E-value=35 Score=27.90 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=42.4
Q ss_pred hhhccHHHHHHHHHHHHHHccChHHHHHHhhC-----CCCCHHHHHHHHHHHhchhhhhhhhhccc
Q 032786 69 IKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRG-----FDWSQEAQALVAAFSGNSTPRGCFSCFCP 129 (133)
Q Consensus 69 lk~~~~el~~iw~l~~alW~rdy~~vy~al~~-----~~Ws~~~~~lv~~l~~~~r~rt~~L~~~~ 129 (133)
+.+..|++..+-.+..++++++|...++.+.. ..-...+.+-+..|....|.+.+.=++-|
T Consensus 279 ~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~ 344 (429)
T 4b4t_R 279 LISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLES 344 (429)
T ss_dssp GGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHT
T ss_pred hccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44567999999999999999999998876522 12333445555666667777776655544
No 36
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.82 E-value=2.3e+02 Score=23.19 Aligned_cols=87 Identities=15% Similarity=0.053 Sum_probs=58.8
Q ss_pred HhccCHHHHHHHHHHHhhhhhhcCCcCCC--chhHHHHHHHHHHhhcchhHHHHHhhCChhhhh--ccHHHHHHHHHHHH
Q 032786 10 LASKSYEKIADICDDLMLKVAAEGIVFQD--EWPYVIHLLGYYYVNDINSARFLWKSIPSTIKD--SRAEVVAAWKIGQH 85 (133)
Q Consensus 10 ~a~~~~~~l~~~cE~~EL~~~~~G~a~~~--~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~--~~~el~~iw~l~~a 85 (133)
.+.|+|.+.+.+..++-.++ .|...-. .-+|..-+=.|+-.+|...|+.+.+++-..... .+|+++........
T Consensus 148 e~~g~~~eA~~iL~~l~~Et--~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~ 225 (445)
T 4b4t_P 148 KEEGKIDEAADILCELQVET--YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLV 225 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHH--CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 46799999999999988875 3432111 146777788899999999999999998433322 24667665544332
Q ss_pred ---HHccChHHHHHHh
Q 032786 86 ---LWTRDYAGVYDAI 98 (133)
Q Consensus 86 ---lW~rdy~~vy~al 98 (133)
.-.|||..+++..
T Consensus 226 ~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 226 KISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHCCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHH
Confidence 3457777665443
No 37
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=28.76 E-value=21 Score=26.79 Aligned_cols=29 Identities=14% Similarity=0.438 Sum_probs=27.1
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+.+|.|..+-++.++..+.-
T Consensus 105 mDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf 133 (183)
T 3lqh_A 105 LDLEGVKRKMDQGNYTSVLEFSDDIVKII 133 (183)
T ss_dssp CSHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999988875
No 38
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=27.66 E-value=2.5e+02 Score=22.83 Aligned_cols=113 Identities=10% Similarity=0.061 Sum_probs=69.5
Q ss_pred hhHHHHHhccCHHHHHHHHHHHh-hhhhhcCCcCCCc-hhHHHHHHHHHHhhcchhHHHHHhhCChhhh----hccHHH-
Q 032786 4 SPLTDALASKSYEKIADICDDLM-LKVAAEGIVFQDE-WPYVIHLLGYYYVNDINSARFLWKSIPSTIK----DSRAEV- 76 (133)
Q Consensus 4 ~~i~~~~a~~~~~~l~~~cE~~E-L~~~~~G~a~~~~-~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk----~~~~el- 76 (133)
..+.++-.+|+|++....|++.- +....=|.-+|+. -.|..+..+|..+++..+|.-+.+|.=+-.+ ..+|.+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 45677788999999988887653 2211113333322 3467777889999999999988887644332 235554
Q ss_pred HHHHHHHHHHHcc-ChHHHHHHhhC---------CCCCHHHHHHHHHHHh
Q 032786 77 VAAWKIGQHLWTR-DYAGVYDAIRG---------FDWSQEAQALVAAFSG 116 (133)
Q Consensus 77 ~~iw~l~~alW~r-dy~~vy~al~~---------~~Ws~~~~~lv~~l~~ 116 (133)
..+.++|...|+. +|+..-..++. .+-++.++.+...+.+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~ 421 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE 421 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4566788877765 66653322221 3566666666555443
No 39
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=27.09 E-value=29 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=22.2
Q ss_pred chhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 3 FSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 3 ~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
|-+++..=..-|++.+-+++|+.|+++
T Consensus 9 FveLrkfKgkvd~~~v~~IL~eiE~~~ 35 (99)
T 2kjg_A 9 FVKLRQFKGKVNFNLVMQILDEIELDL 35 (99)
T ss_dssp HHHHHHHTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 445566667779999999999999997
No 40
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=26.19 E-value=27 Score=24.44 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=26.4
Q ss_pred CCchhHHHHHhc--cCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALAS--KSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~--~~~~~l~~~cE~~EL~~ 29 (133)
|||+.|+.-|.. +.|..+.++..+..|-.
T Consensus 60 mDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif 90 (135)
T 2yyn_A 60 MDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 90 (135)
T ss_dssp CCHHHHHHHHHSSSCCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 999999999998 48999999999999885
No 41
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=26.08 E-value=1.1e+02 Score=18.47 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=50.0
Q ss_pred HHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHHHHHHHHH
Q 032786 7 TDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAAWKIGQHL 86 (133)
Q Consensus 7 ~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~iw~l~~al 86 (133)
..+...|+|++-...+++.-=. .++....++ .+-.+=.+|.-.+|..+|.-..+++-..-..+.........+|.+.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL-YPNGVYTPN--ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSSTTHHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH-CCCCcccHH--HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 4567899999988888865422 122110001 2334445677889999999888776332222111134556677766
Q ss_pred Hc-cChHHHHH
Q 032786 87 WT-RDYAGVYD 96 (133)
Q Consensus 87 W~-rdy~~vy~ 96 (133)
.+ +++...-+
T Consensus 87 ~~~g~~~~A~~ 97 (129)
T 2xev_A 87 YGEGKNTEAQQ 97 (129)
T ss_dssp HHTTCHHHHHH
T ss_pred HHcCCHHHHHH
Confidence 54 46666443
No 42
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=26.05 E-value=23 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
|||+.|..-|..|.|..+.++..+..|..
T Consensus 64 mDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (166)
T 3fkm_X 64 MSFSCIKTKLKKGQYAYPSEFVKDVQLIF 92 (166)
T ss_dssp CCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 43
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=25.77 E-value=32 Score=27.11 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=22.7
Q ss_pred hHHHHHHHH-HHhhcchhHHHHHhhCChhhh
Q 032786 41 PYVIHLLGY-YYVNDINSARFLWKSIPSTIK 70 (133)
Q Consensus 41 ~Ya~~Ll~y-Ll~nDL~~AR~LwKRIP~~lk 70 (133)
.++..|.=+ |..+.+..||-+.+|+|.+.-
T Consensus 35 ~~~n~l~R~FL~~gkl~AAr~l~~rlp~~~i 65 (270)
T 3cqc_A 35 KQGNAIMRKFLASKKHEAAKEVFVKIPQDSI 65 (270)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCTTHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHCChHHH
Confidence 344455444 448999999999999999873
No 44
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=25.53 E-value=1.8e+02 Score=20.54 Aligned_cols=76 Identities=14% Similarity=0.288 Sum_probs=49.1
Q ss_pred hHHHH----HhccCHHHHHHHHHHH-hhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHHHHHH
Q 032786 5 PLTDA----LASKSYEKIADICDDL-MLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAEVVAA 79 (133)
Q Consensus 5 ~i~~~----~a~~~~~~l~~~cE~~-EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~el~~i 79 (133)
.|++| -..+|.++....++.+ +.-. .| |+...-.+ +..-+-.||.+|+-..+|-... .....+..+
T Consensus 42 ~LeeASrlyf~~~n~~~m~~~L~pLh~~l~--~~---PeT~~E~s--F~~~fG~~L~~A~~~~~~y~~t--~d~~~lnqA 112 (126)
T 2npu_A 42 GLEEASRLYFGERNVKGMFEVLEPLHAMME--RG---PQTLKETS--FNQAYGRDLMEAQEWCRKYMKS--GNVKDLTQA 112 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HS---CCCHHHHH--HHHHHHHHHHHHHHHHHHHHHT--CCHHHHHHH
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHc--cC---CCCHHHHH--HHHHHhHHHHHHHHHHHHHHHh--CChhHHHHH
Confidence 45555 3667999999998776 3221 23 33322333 3445689999999999997543 233568899
Q ss_pred HHHHHHHHcc
Q 032786 80 WKIGQHLWTR 89 (133)
Q Consensus 80 w~l~~alW~r 89 (133)
|.+-..+++|
T Consensus 113 Wd~Y~~Vf~r 122 (126)
T 2npu_A 113 WDLYYHVFRR 122 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987766543
No 45
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=25.09 E-value=1.5e+02 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhcchhHHHHH
Q 032786 42 YVIHLLGYYYVNDINSARFLW 62 (133)
Q Consensus 42 Ya~~Ll~yLl~nDL~~AR~Lw 62 (133)
|..-+..+++.||+.++--+.
T Consensus 92 ~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 92 FGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 677777777777777776555
No 46
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=24.47 E-value=29 Score=25.30 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=26.6
Q ss_pred CCchhHHHHHhc--cCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALAS--KSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~--~~~~~l~~~cE~~EL~~ 29 (133)
|||+.|++-|.. |.|..+.++..+..|..
T Consensus 121 mdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~ 151 (184)
T 3o36_A 121 MDLSTIKKRLQEDYSMYSKPEDFVADFRLIF 151 (184)
T ss_dssp CCHHHHHHHHHSTTCSCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 999999999998 78999999999998885
No 47
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=24.39 E-value=29 Score=25.75 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=27.2
Q ss_pred CCchhHHHHHhcc---CHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASK---SYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~---~~~~l~~~cE~~EL~~ 29 (133)
|||+.|+.-|..| .|..+.++..+..|.-
T Consensus 115 MDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif 146 (189)
T 2ro1_A 115 LDLTLIRARLQEKLSPPYSSPQEFAQDVGRMF 146 (189)
T ss_dssp CCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCCcccCCHHHHHHHHHHHH
Confidence 9999999999999 8999999999999885
No 48
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=24.01 E-value=1.7e+02 Score=24.17 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=48.3
Q ss_pred ccHHHHHHHHHHHHHHccChHHHHHHhhCCC----CCHHHHHHHHHHHhchhhhhhhhhcccc
Q 032786 72 SRAEVVAAWKIGQHLWTRDYAGVYDAIRGFD----WSQEAQALVAAFSGNSTPRGCFSCFCPL 130 (133)
Q Consensus 72 ~~~el~~iw~l~~alW~rdy~~vy~al~~~~----Ws~~~~~lv~~l~~~~r~rt~~L~~~~~ 130 (133)
.+|++..+-.+.++.-++|+..+.+.+..+. =.+.+++-+..+...+|.+.+.-++.|-
T Consensus 252 ~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pY 314 (394)
T 3txn_A 252 SGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPY 314 (394)
T ss_dssp CSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4799999999999999999999988887532 2455577788888999999888877774
No 49
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=23.92 E-value=3e+02 Score=22.49 Aligned_cols=98 Identities=16% Similarity=0.227 Sum_probs=59.5
Q ss_pred CchhHHHHHhcc------CHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhccHH
Q 032786 2 DFSPLTDALASK------SYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDSRAE 75 (133)
Q Consensus 2 ~~~~i~~~~a~~------~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~~~e 75 (133)
||..|++++.+| |++.+-..+|.+|=- ..|..|+.=+..| .-++-.+=..-+..|..+++-
T Consensus 23 ~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~El--------SHDi~~G~KI~~~--ef~lL~nL~~~~~~~~~~rE~--- 89 (315)
T 3qml_C 23 DFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEF--------AHDYKHGYKIITH--EFALLANLSLNENLPLTLREL--- 89 (315)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGG--------TTSHHHHHHHHHH--HHHHHHHHHHCTTSCHHHHHH---
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHh--------hhhHHhhhHHHhC--cHHHHHHHHhhccCChhHHHH---
Confidence 578899999999 888888888887722 2355676666653 112221112223467776642
Q ss_pred HHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHhc
Q 032786 76 VVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGN 117 (133)
Q Consensus 76 l~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~ 117 (133)
+.=-||-||-|+ |.+-+.+.. .|+.-+..+...+.+.
T Consensus 90 --aarII~ssLRNN--P~Al~~V~~-~~p~fv~~lf~~L~~~ 126 (315)
T 3qml_C 90 --STRVITSCLRNN--PPVVEFINE-SFPNFKSKIMAALSNL 126 (315)
T ss_dssp --HHHHHHHHHTTC--HHHHHHHHH-HCTTHHHHHHHHHHHH
T ss_pred --HHHHHHHHHccC--HHHHHHHHH-hChhHHHHHHHHHHHH
Confidence 233345554433 555555544 6898888888877663
No 50
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.91 E-value=1.3e+02 Score=21.40 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCCh
Q 032786 15 YEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPS 67 (133)
Q Consensus 15 ~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~ 67 (133)
|+.+.+.+++++|.. |.-+-|..-+++..+.+++-+..|+-+ +|.
T Consensus 86 f~~vl~~ldDl~lDi-------P~A~~~la~~v~~ai~~g~l~~~~~~~-~p~ 130 (152)
T 2ion_A 86 YERIYNEIPDINLDV-------PHSYSVLERFVEECFQAGIISKQLRDL-CPS 130 (152)
T ss_dssp HHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTCSCHHHHHT-CTT
T ss_pred HHHHHHhChHhccCc-------cchHHHHHHHHHHHHHCCCCCHHHHHh-CCC
Confidence 788999999999885 445568888889999999999998877 776
No 51
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=22.68 E-value=2.5e+02 Score=22.41 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=51.6
Q ss_pred HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhc-----cHHHHHHH
Q 032786 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDS-----RAEVVAAW 80 (133)
Q Consensus 6 i~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~-----~~el~~iw 80 (133)
+...++.|+++.++..|+.+ +.. . + -+...|..++.+|.-.++-.+|.-...+.=..+.+. .|+++++.
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~-~~~--~--P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEAL-TFE--H--P-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-HHH--S--T-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH-HHh--C--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 45678899999999888876 332 1 1 133579999999999999999988887776666542 47777765
Q ss_pred H
Q 032786 81 K 81 (133)
Q Consensus 81 ~ 81 (133)
.
T Consensus 252 ~ 252 (388)
T 2ff4_A 252 E 252 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=20.22 E-value=40 Score=26.13 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+..|.|..+.++..+..|-.
T Consensus 55 mdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (265)
T 3uv5_A 55 MDLQTLRENVRKRLYPSREEFREHLELIV 83 (265)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999986
No 53
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=20.09 E-value=40 Score=26.10 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=27.7
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+..|.|..+.++.++..|-.
T Consensus 178 mdl~tI~~kl~~~~Y~~~~~f~~D~~lif 206 (265)
T 3uv5_A 178 MDLETIRKNISKHKYQSRESFLDDVNLIL 206 (265)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999986
Done!