Query 032786
Match_columns 133
No_of_seqs 103 out of 112
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 09:17:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032786.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032786hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qqea_ a.118.8.1 (A:) Vesicul 65.5 12 0.00087 26.2 7.4 95 8-103 167-265 (290)
2 d1ug3a1 a.118.1.14 (A:1235-142 46.7 11 0.00079 26.2 4.2 62 15-83 86-150 (193)
3 d3d7ca1 a.29.2.1 (A:731-832) G 46.5 3.8 0.00027 25.9 1.5 29 1-29 43-71 (102)
4 d1fi4a2 d.58.26.2 (A:191-393) 42.2 6.4 0.00047 28.6 2.4 26 2-27 43-68 (203)
5 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 40.1 5.5 0.0004 25.4 1.5 29 1-29 44-72 (111)
6 d3dwya1 a.29.2.1 (A:1084-1197) 39.5 5.7 0.00042 25.5 1.5 29 1-29 50-78 (114)
7 d1eqfa2 a.29.2.1 (A:1498-1625) 37.6 6.3 0.00046 25.9 1.5 29 1-29 51-79 (128)
8 d2ouxa1 a.118.26.1 (A:6-135) M 37.4 3.6 0.00026 26.7 0.2 103 3-126 6-114 (130)
9 d1eqfa1 a.29.2.1 (A:1359-1497) 34.7 7.4 0.00054 25.9 1.5 29 1-29 67-95 (139)
10 d1wuma1 a.29.2.1 (A:715-832) P 34.0 5.5 0.0004 25.7 0.7 29 1-29 54-82 (118)
11 d1hz4a_ a.118.8.2 (A:) Transcr 26.7 71 0.0051 20.7 5.7 59 8-67 21-79 (366)
12 d1zbpa1 e.61.1.1 (A:2-265) Hyp 25.0 77 0.0056 22.3 6.0 54 5-65 2-56 (264)
13 d1y6ia2 a.261.1.1 (A:83-233) M 23.9 45 0.0033 22.7 4.2 30 1-30 9-38 (151)
14 d1z3xa2 a.261.1.1 (A:88-235) G 23.2 45 0.0033 22.6 4.1 29 1-29 9-37 (148)
15 d1k28a3 d.2.1.3 (A:130-345) Ta 22.8 90 0.0066 21.7 5.9 67 42-111 107-183 (216)
16 d2ff4a2 a.118.8.3 (A:105-283) 21.7 1E+02 0.0074 20.1 7.0 69 6-80 74-147 (179)
17 d1ny5a2 c.37.1.20 (A:138-384) 20.4 57 0.0042 22.8 4.4 48 68-115 172-227 (247)
No 1
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.48 E-value=12 Score=26.19 Aligned_cols=95 Identities=14% Similarity=0.025 Sum_probs=55.6
Q ss_pred HHHhccCHHHHHHHHHHHhhhhhhcCCcCCC-chhHHHHHHHHHHhhcchhHHHHHhhCCh---hhhhccHHHHHHHHHH
Q 032786 8 DALASKSYEKIADICDDLMLKVAAEGIVFQD-EWPYVIHLLGYYYVNDINSARFLWKSIPS---TIKDSRAEVVAAWKIG 83 (133)
Q Consensus 8 ~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~-~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~---~lk~~~~el~~iw~l~ 83 (133)
-....|+|++-...+++.--....++..... ...|....+.|+..+|..+|+-...|.-+ .... ..|-.-+-.++
T Consensus 167 ~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~-sre~~~l~~l~ 245 (290)
T d1qqea_ 167 LKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLI 245 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc-hHHHHHHHHHH
Confidence 4577899999888888753221112211111 14566777889999999999888776522 1221 12344455666
Q ss_pred HHHHccChHHHHHHhhCCCC
Q 032786 84 QHLWTRDYAGVYDAIRGFDW 103 (133)
Q Consensus 84 ~alW~rdy~~vy~al~~~~W 103 (133)
.++=.+|-..+-++++.++.
T Consensus 246 ~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 246 DAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 67666666556666665443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.70 E-value=11 Score=26.23 Aligned_cols=62 Identities=11% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhh---ccHHHHHHHHHH
Q 032786 15 YEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKD---SRAEVVAAWKIG 83 (133)
Q Consensus 15 ~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~---~~~el~~iw~l~ 83 (133)
|+.+...++++++.. |..|-|---+++-++.+++.+..++|+-+-..+.. +-+-+..+-...
T Consensus 86 f~~~l~~l~Dl~iDi-------P~a~~~la~~~a~~i~~~~l~l~~l~~~~~~~l~~~g~~~~l~~~~L~~l 150 (193)
T d1ug3a1 86 LYEILELAEDMEIDI-------PHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLL 150 (193)
T ss_dssp HHHHHHHHHHHTTTC-------TTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhcc-------hHHHHHHHHHHHHHHHcCCCCHHHHHHHhcccccccchHHHHHHHHHHHH
Confidence 777889999888885 55677888999999999999999999866443332 234455544433
No 3
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.45 E-value=3.8 Score=25.89 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+..|.|..+.++.++..|-.
T Consensus 43 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 71 (102)
T d3d7ca1 43 IDLKTMTERLRSRYYVTRKLFVADLQRVI 71 (102)
T ss_dssp CCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cCHHHHHHHhccCccCCHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 4
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.23 E-value=6.4 Score=28.59 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=21.3
Q ss_pred CchhHHHHHhccCHHHHHHHHHHHhh
Q 032786 2 DFSPLTDALASKSYEKIADICDDLML 27 (133)
Q Consensus 2 ~~~~i~~~~a~~~~~~l~~~cE~~EL 27 (133)
++.++.++|..+||.+++.++|.-=+
T Consensus 43 r~~~m~~AI~~rDF~~f~eite~ds~ 68 (203)
T d1fi4a2 43 RFEVMRKAIVEKDFATFAKETMMDSN 68 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence 36788999999999999998775433
No 5
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.14 E-value=5.5 Score=25.42 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-+.+|.|..+.++..+..|-.
T Consensus 44 mdL~tI~~kl~~~~Y~s~~~f~~Dv~li~ 72 (111)
T d1e6ia_ 44 MDLSTMEIKLESNKYQKMEDFIYDARLVF 72 (111)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 6
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.51 E-value=5.7 Score=25.47 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|++-+..|.|..+.++.++.+|-.
T Consensus 50 mdL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 78 (114)
T d3dwya1 50 MDLSTIKRKLDTGQYQEPWQYVDDVWLMF 78 (114)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCccccHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 7
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.61 E-value=6.3 Score=25.91 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=27.4
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|+.-+..|.|..+-++.++.+|-.
T Consensus 51 mDL~tI~~kl~~~~Y~s~~ef~~Dv~li~ 79 (128)
T d1eqfa2 51 MDLETIRKNISKHKYQSRESFLDDVNLIL 79 (128)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 8
>d2ouxa1 a.118.26.1 (A:6-135) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=37.39 E-value=3.6 Score=26.75 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=58.9
Q ss_pred chhHHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhh-cchhHHHHHhhCChhhhhc-----cHHH
Q 032786 3 FSPLTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVN-DINSARFLWKSIPSTIKDS-----RAEV 76 (133)
Q Consensus 3 ~~~i~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~n-DL~~AR~LwKRIP~~lk~~-----~~el 76 (133)
|..|.+++.+++.+++...++++ ..+ + ++.++.+ +-...+.+|+.+|.+.... +++.
T Consensus 6 ~~~l~~~l~~~~~~~l~~~l~~l--hpa--------D-------iA~~l~~l~~~~r~~l~~~l~~~~~a~vl~~l~~~~ 68 (130)
T d2ouxa1 6 FALLLETLKNQQMNEFRELFLAL--HIY--------E-------QGQFYQSLDEKDRQHLYNYLSPKELADMFDVIEEDN 68 (130)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTS--CHH--------H-------HHHHHTTSCHHHHHHHHHHSCHHHHHHHHTTSCTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHhC--CHH--------H-------HHHHHHHhcHhHHHHHHHHhhhHHHHHHHHHhcchH
Confidence 46788999999999998887753 321 1 1222222 5567888999998765521 1100
Q ss_pred HHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHHHHHHhchhhhhhhhh
Q 032786 77 VAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALVAAFSGNSTPRGCFSC 126 (133)
Q Consensus 77 ~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv~~l~~~~r~rt~~L~ 126 (133)
.....+...+-...-+.+...+. ++....++..+.+..+++.+.++
T Consensus 69 ~~~~~il~~l~~~~~a~il~~m~----~DDaadll~~L~~~~~~~iL~~l 114 (130)
T d2ouxa1 69 ENMKDYLAEMRPSYAADMLAEMY----TDNAVDLLNMLDKSQKAKYLSLL 114 (130)
T ss_dssp SSTTHHHHHSCHHHHHHHHTTSC----HHHHHHHHHHSCHHHHHHHHHTS
T ss_pred HHHHHHHhcCCHHHHHHHHHHcC----hHHHHHHHHHCCHHHHHHHHHcC
Confidence 01123444443333333333332 56677777777777777666543
No 9
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.70 E-value=7.4 Score=25.85 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=27.5
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..=+.+|.|..+.++.++.+|-.
T Consensus 67 mdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 95 (139)
T d1eqfa1 67 MDLQTLRENVRKRLYPSREEFREHLELIV 95 (139)
T ss_dssp CCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCcCCHHHHHHHHHHHH
Confidence 89999999999999999999999999885
No 10
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.01 E-value=5.5 Score=25.75 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.|..-|.+|.|..+.++..+..|-.
T Consensus 54 mdL~~I~~kl~~~~Y~s~~ef~~Dv~li~ 82 (118)
T d1wuma1 54 MDLKTMSERLKNRYYVSKKLFMADLQRVF 82 (118)
T ss_dssp CCHHHHHHHHTTTCCCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHhcccccCchHHHHHHHHHHH
Confidence 89999999999999999999999998885
No 11
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=26.72 E-value=71 Score=20.72 Aligned_cols=59 Identities=7% Similarity=-0.012 Sum_probs=36.2
Q ss_pred HHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCCh
Q 032786 8 DALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPS 67 (133)
Q Consensus 8 ~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~ 67 (133)
.++..|+|++-...+++. |+..+++........+..+=.+|...+|..+|.-..++.-+
T Consensus 21 ~~~~~g~~~~A~~~~~~a-L~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 79 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLA-LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 79 (366)
T ss_dssp HHHHTTCHHHHHHHHHHH-HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH-HhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 367899999988888875 22222211100011233344577888999999988876543
No 12
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=24.96 E-value=77 Score=22.29 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=42.3
Q ss_pred hHHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCc-hhHHHHHHHHHHhhcchhHHHHHhhC
Q 032786 5 PLTDALASKSYEKIADICDDLMLKVAAEGIVFQDE-WPYVIHLLGYYYVNDINSARFLWKSI 65 (133)
Q Consensus 5 ~i~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~-~~Ya~~Ll~yLl~nDL~~AR~LwKRI 65 (133)
.-+++++.|++++-+..+++. ++.. |++ ..+..+.-.|...+|..+|.-..++.
T Consensus 2 q~~~aL~~G~l~eAl~~l~~a-l~~~------P~d~~ar~~La~lL~~~G~~e~A~~~l~~a 56 (264)
T d1zbpa1 2 QWKNALSEGQLQQALELLIEA-IKAS------PKDASLRSSFIELLCIDGDFERADEQLMQS 56 (264)
T ss_dssp CHHHHTTTTCHHHHHHHHHHH-HHTC------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHHHHH-HHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 457899999999988888765 3321 222 46888889999999999999888875
No 13
>d1y6ia2 a.261.1.1 (A:83-233) Mg-chelatase cofactor Gun4 {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=23.93 E-value=45 Score=22.70 Aligned_cols=30 Identities=33% Similarity=0.650 Sum_probs=25.0
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKVA 30 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~~ 30 (133)
||++.+++++++|++++-=..=-+++|+.+
T Consensus 9 idY~~L~~lL~~~~W~eAD~eT~~lml~~a 38 (151)
T d1y6ia2 9 IDYLPLQEALGSQDFETADEITRDKLCELA 38 (151)
T ss_dssp CCCHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHh
Confidence 799999999999999986666667777753
No 14
>d1z3xa2 a.261.1.1 (A:88-235) GUN4-like protein Ycf53 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.16 E-value=45 Score=22.58 Aligned_cols=29 Identities=14% Similarity=0.390 Sum_probs=23.3
Q ss_pred CCchhHHHHHhccCHHHHHHHHHHHhhhh
Q 032786 1 MDFSPLTDALASKSYEKIADICDDLMLKV 29 (133)
Q Consensus 1 m~~~~i~~~~a~~~~~~l~~~cE~~EL~~ 29 (133)
||++.+++++++|++.+-=..=-+++|+.
T Consensus 9 idY~~L~~lL~~~~W~eAD~eT~~lml~~ 37 (148)
T d1z3xa2 9 VDYQELAKLLVAEKFEAADRLTTQKLCEL 37 (148)
T ss_dssp CCCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 79999999999999998555555666765
No 15
>d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}
Probab=22.82 E-value=90 Score=21.73 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhcchhHHH----------HHhhCChhhhhccHHHHHHHHHHHHHHccChHHHHHHhhCCCCCHHHHHHH
Q 032786 42 YVIHLLGYYYVNDINSARF----------LWKSIPSTIKDSRAEVVAAWKIGQHLWTRDYAGVYDAIRGFDWSQEAQALV 111 (133)
Q Consensus 42 Ya~~Ll~yLl~nDL~~AR~----------LwKRIP~~lk~~~~el~~iw~l~~alW~rdy~~vy~al~~~~Ws~~~~~lv 111 (133)
++.=-+-.|+.+||..|.- -|..+|+..+ +.-+-=++.+|.. .-+.|+.+.++|+..+|..-...++
T Consensus 107 it~~ea~~Ll~~Dl~~a~~~~~~~~~~~~~~~~L~~~~q--~ALvsm~FNlG~~-~l~kF~~~~~al~~gd~~~Aa~Eml 183 (216)
T d1k28a3 107 ITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQ--MALENMAFQMGVG-GVAKFNTMLTAMLAGDWEKAYKAGR 183 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHSCHHHH--HHHHHHHHHHHHH-HHTTCHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCHHHH--HHHhcceeccCCc-hhcccHHHHHHHHcCCHHHHHHHHH
Confidence 4444566677777776653 3556888887 3566667787765 2246777888887777777776664
No 16
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=21.71 E-value=1e+02 Score=20.08 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=49.1
Q ss_pred HHHHHhccCHHHHHHHHHHHhhhhhhcCCcCCCchhHHHHHHHHHHhhcchhHHHHHhhCChhhhhc-----cHHHHHHH
Q 032786 6 LTDALASKSYEKIADICDDLMLKVAAEGIVFQDEWPYVIHLLGYYYVNDINSARFLWKSIPSTIKDS-----RAEVVAAW 80 (133)
Q Consensus 6 i~~~~a~~~~~~l~~~cE~~EL~~~~~G~a~~~~~~Ya~~Ll~yLl~nDL~~AR~LwKRIP~~lk~~-----~~el~~iw 80 (133)
...++..|++++.+..|+..--. .| -+...|..++-+|.-.++..+|.-.++|.=..+++. .|+++++.
T Consensus 74 a~~~~~~g~~~~Al~~~~~al~~-~P-----~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~ 147 (179)
T d2ff4a2 74 AEAEIACGRASAVIAELEALTFE-HP-----YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 147 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-ST-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHCCCchHHHHHHHHHHHh-CC-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 45678899999999999876322 11 123579999999999999999988888764444322 35665553
No 17
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=20.40 E-value=57 Score=22.83 Aligned_cols=48 Identities=8% Similarity=0.321 Sum_probs=30.1
Q ss_pred hhhhccHHHHHHHHHHHHHHccCh--------HHHHHHhhCCCCCHHHHHHHHHHH
Q 032786 68 TIKDSRAEVVAAWKIGQHLWTRDY--------AGVYDAIRGFDWSQEAQALVAAFS 115 (133)
Q Consensus 68 ~lk~~~~el~~iw~l~~alW~rdy--------~~vy~al~~~~Ws~~~~~lv~~l~ 115 (133)
++.+....+..+..-.-.-..+.+ +++.+.|..++|+..+.+|...+.
T Consensus 172 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~ 227 (247)
T d1ny5a2 172 PLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIE 227 (247)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred ChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 455554556555554333222221 578899999999999887766554
Done!