BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032787
         (133 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
           Proteus Mirabilis Hi4320
          Length = 319

 Score = 26.9 bits (58), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 110 DLSARGLGDPETTLTKVYPVCPVS 133
           DLS R   DP+  L   YPV P++
Sbjct: 185 DLSHRIQKDPDVHLLSAYPVAPIN 208


>pdb|3GYT|A Chain A, Nuclear Receptor Daf-12 From Parasitic Nematode
           Strongyloides Stercoralis In Complex With Its
           Physiological Ligand Dafachronic Acid Delta 4
          Length = 244

 Score = 26.6 bits (57), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 13  ASIKIQQKQQPTRNWMMMQGLRRRNGKASKRVGVTNCSGNSG---------IEIGDFIGG 63
           AS   +++  PT    +M    RR  K +KR+G  N    +G         IE+    G 
Sbjct: 33  ASTLAKKEHNPTDILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGV 92

Query: 64  DLLKPDLGRWLSDVEKHKAIAI 85
            +   D G W + V+ H  I+ 
Sbjct: 93  TVFNADKGVWQTPVDGHSQISF 114


>pdb|1U60|A Chain A, Mcsg Apc5046 Probable Glutaminase Ybas
 pdb|1U60|B Chain B, Mcsg Apc5046 Probable Glutaminase Ybas
 pdb|1U60|C Chain C, Mcsg Apc5046 Probable Glutaminase Ybas
 pdb|1U60|D Chain D, Mcsg Apc5046 Probable Glutaminase Ybas
          Length = 310

 Score = 25.8 bits (55), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 28  MMMQGLRRRNGKASKRVGVTNCSGNSG 54
           MMM+GL  R+G  + RVG+   SG  G
Sbjct: 238 MMMEGLYGRSGDWAYRVGLPGKSGVGG 264


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,622,101
Number of Sequences: 62578
Number of extensions: 116506
Number of successful extensions: 180
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 178
Number of HSP's gapped (non-prelim): 5
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)